https://launchpad.net/ubuntu/+source/libmaus2/2.0.768+dfsg-2/+build/21678578 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-071 4.15.0-156-generic #163-Ubuntu SMP Thu Aug 19 23:31:36 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_200~495~ubuntu18.04.1 python3-lpbuildd_200~495~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.8 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 10 Sep 18:15:16 ntpdate[1662]: adjust time server 10.211.37.1 offset -0.000308 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=armhf PACKAGEBUILD-21678578 --image-type chroot /home/buildd/filecache-default/97616dc8f1f80df2f95e447b7ddaa1d0ac1b5f62 Creating target for build PACKAGEBUILD-21678578 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=armhf PACKAGEBUILD-21678578 Starting target for build PACKAGEBUILD-21678578 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=armhf PACKAGEBUILD-21678578 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-21678578 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=armhf PACKAGEBUILD-21678578 Updating target for build PACKAGEBUILD-21678578 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main armhf Packages [1356 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe armhf Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5465 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main armhf Packages [113 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [41.3 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe armhf Packages [120 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [57.4 kB] Fetched 20.9 MB in 7s (2843 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-10 libstdc++-10-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libffi8ubuntu1* The following NEW packages will be installed: cpp-11 g++-11 gcc-11 libffi8 libgcc-11-dev libstdc++-11-dev The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential cpp cpp-10 dash debconf diffutils dpkg dpkg-dev e2fsprogs findutils g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base gpg gpg-agent gpgconf gpgv grep gzip libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdevmapper1.02.1 libdpkg-perl libext2fs2 libgcc-10-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libnettle8 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.32 libprocps8 libreadline8 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mount openssl passwd perl perl-base perl-modules-5.32 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils usrmerge util-linux xz-utils zlib1g 120 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 239 MB of archives. After this operation, 435 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu impish/main armhf libcrypt-dev armhf 1:4.4.18-4ubuntu1 [112 kB] Get:2 http://ftpmaster.internal/ubuntu impish/main armhf libnsl-dev armhf 1.3.0-2 [61.2 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main armhf libc6-dev armhf 2.34-0ubuntu2 [1314 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main armhf libc-dev-bin armhf 2.34-0ubuntu2 [18.9 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main armhf libcrypt1 armhf 1:4.4.18-4ubuntu1 [86.6 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main armhf libtirpc-common all 1.3.2-2 [7674 B] Get:7 http://ftpmaster.internal/ubuntu impish/main armhf libtirpc-dev armhf 1.3.2-2 [184 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main armhf libk5crypto3 armhf 1.18.3-6 [83.9 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main armhf libkrb5support0 armhf 1.18.3-6 [30.2 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main armhf libkrb5-3 armhf 1.18.3-6 [330 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main armhf libgssapi-krb5-2 armhf 1.18.3-6 [120 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main armhf libcom-err2 armhf 1.46.3-1ubuntu3 [9852 B] Get:13 http://ftpmaster.internal/ubuntu impish/main armhf libperl5.32 armhf 5.32.1-3ubuntu3 [3985 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main armhf perl armhf 5.32.1-3ubuntu3 [227 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main armhf perl-base armhf 5.32.1-3ubuntu3 [1598 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main armhf perl-modules-5.32 all 5.32.1-3ubuntu3 [2945 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.8ubuntu1 [585 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main armhf zlib1g armhf 1:1.2.11.dfsg-2ubuntu7 [51.3 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main armhf debconf all 1.5.77 [121 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main armhf libc6 armhf 2.34-0ubuntu2 [2500 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main armhf libc-bin armhf 2.34-0ubuntu2 [843 kB] Get:22 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libssl1.1 armhf 1.1.1l-1ubuntu1 [1200 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main armhf libtirpc3 armhf 1.3.2-2 [72.3 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main armhf libnsl2 armhf 1.3.0-2 [33.3 kB] Get:25 http://ftpmaster.internal/ubuntu impish-proposed/main armhf linux-libc-dev armhf 5.13.0-16.16 [1240 kB] Get:26 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libasan6 armhf 11.2.0-5ubuntu1 [2241 kB] Get:27 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libubsan1 armhf 11.2.0-5ubuntu1 [893 kB] Get:28 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libgomp1 armhf 11.2.0-5ubuntu1 [100 kB] Get:29 http://ftpmaster.internal/ubuntu impish-proposed/main armhf gcc-11-base armhf 11.2.0-5ubuntu1 [20.4 kB] Get:30 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libgcc-s1 armhf 11.2.0-5ubuntu1 [42.6 kB] Get:31 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libcc1-0 armhf 11.2.0-5ubuntu1 [45.8 kB] Get:32 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libatomic1 armhf 11.2.0-5ubuntu1 [7618 B] Get:33 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libstdc++6 armhf 11.2.0-5ubuntu1 [572 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main armhf base-files armhf 11.1ubuntu3 [60.6 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main armhf bash armhf 5.1-3ubuntu1 [605 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main armhf bsdutils armhf 1:2.36.1-8ubuntu1 [86.7 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main armhf dpkg armhf 1.20.9ubuntu2 [1219 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main armhf dash armhf 0.5.11+git20210120+802ebd4-1 [78.7 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main armhf diffutils armhf 1:3.8-0ubuntu1 [192 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main armhf findutils armhf 4.8.0-1ubuntu2 [323 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main armhf grep armhf 3.7-0ubuntu1 [185 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main armhf gzip armhf 1.10-4ubuntu1 [91.1 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main armhf login armhf 1:4.8.1-1ubuntu9 [221 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main armhf util-linux armhf 2.36.1-8ubuntu1 [1072 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main armhf base-passwd armhf 3.5.51 [48.6 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main armhf sysvinit-utils armhf 2.96-7ubuntu1 [19.2 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main armhf libgcrypt20 armhf 1.8.7-5ubuntu1 [363 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main armhf liblz4-1 armhf 1.9.3-2 [49.6 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main armhf liblzma5 armhf 5.2.5-2 [83.7 kB] Get:50 http://ftpmaster.internal/ubuntu impish-proposed/main armhf systemd-sysv armhf 248.3-1ubuntu7 [10.5 kB] Get:51 http://ftpmaster.internal/ubuntu impish-proposed/main armhf systemd-timesyncd armhf 248.3-1ubuntu7 [30.6 kB] Get:52 http://ftpmaster.internal/ubuntu impish/main armhf libapparmor1 armhf 3.0.3-0ubuntu1 [32.7 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main armhf libaudit-common all 1:3.0-2ubuntu2 [4788 B] Get:54 http://ftpmaster.internal/ubuntu impish/main armhf libaudit1 armhf 1:3.0-2ubuntu2 [37.1 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main armhf libblkid1 armhf 2.36.1-8ubuntu1 [131 kB] Get:56 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libudev1 armhf 248.3-1ubuntu7 [69.1 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main armhf libdevmapper1.02.1 armhf 2:1.02.175-2.1ubuntu1 [120 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main armhf libuuid1 armhf 2.36.1-8ubuntu1 [22.7 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main armhf libcryptsetup12 armhf 2:2.3.6-0ubuntu1 [193 kB] Get:60 http://ftpmaster.internal/ubuntu impish/main armhf libnettle8 armhf 3.7.3-1 [159 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main armhf libhogweed6 armhf 3.7.3-1 [183 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main armhf libunistring2 armhf 0.9.10-6 [478 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main armhf libidn2-0 armhf 2.3.1-1 [50.3 kB] Get:64 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libffi8 armhf 3.4.2-1ubuntu3 [19.2 kB] Get:65 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libp11-kit0 armhf 0.23.22-1build1 [217 kB] Get:66 http://ftpmaster.internal/ubuntu impish/main armhf libgnutls30 armhf 3.7.1-5ubuntu1 [921 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main armhf libzstd1 armhf 1.4.8+dfsg-2.1 [255 kB] Get:68 http://ftpmaster.internal/ubuntu impish/main armhf libkmod2 armhf 28-1ubuntu4 [37.8 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main armhf libmount1 armhf 2.36.1-8ubuntu1 [146 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main armhf libpam0g armhf 1.3.1-5ubuntu8 [54.0 kB] Get:71 http://ftpmaster.internal/ubuntu impish/main armhf mount armhf 2.36.1-8ubuntu1 [122 kB] Get:72 http://ftpmaster.internal/ubuntu impish-proposed/main armhf systemd armhf 248.3-1ubuntu7 [4305 kB] Get:73 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libsystemd0 armhf 248.3-1ubuntu7 [285 kB] Get:74 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libapt-pkg6.0 armhf 2.3.9 [895 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main armhf gpgv armhf 2.2.20-1ubuntu4 [172 kB] Get:76 http://ftpmaster.internal/ubuntu impish-proposed/main armhf apt armhf 2.3.9 [1373 kB] Get:77 http://ftpmaster.internal/ubuntu impish/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu8 [40.5 kB] Get:78 http://ftpmaster.internal/ubuntu impish/main armhf libpam-modules armhf 1.3.1-5ubuntu8 [257 kB] Get:79 http://ftpmaster.internal/ubuntu impish/main armhf logsave armhf 1.46.3-1ubuntu3 [10.9 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main armhf libext2fs2 armhf 1.46.3-1ubuntu3 [192 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main armhf e2fsprogs armhf 1.46.3-1ubuntu3 [562 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main armhf libpam-runtime all 1.3.1-5ubuntu8 [38.7 kB] Get:83 http://ftpmaster.internal/ubuntu impish/main armhf libpcre2-8-0 armhf 10.37-0ubuntu2 [189 kB] Get:84 http://ftpmaster.internal/ubuntu impish/main armhf libsmartcols1 armhf 2.36.1-8ubuntu1 [91.1 kB] Get:85 http://ftpmaster.internal/ubuntu impish/main armhf passwd armhf 1:4.8.1-1ubuntu9 [787 kB] Get:86 http://ftpmaster.internal/ubuntu impish/main armhf libprocps8 armhf 2:3.3.17-5ubuntu3 [32.6 kB] Get:87 http://ftpmaster.internal/ubuntu impish/main armhf libss2 armhf 1.46.3-1ubuntu3 [10.1 kB] Get:88 http://ftpmaster.internal/ubuntu impish/main armhf procps armhf 2:3.3.17-5ubuntu3 [373 kB] Get:89 http://ftpmaster.internal/ubuntu impish/main armhf usrmerge all 25ubuntu1 [53.5 kB] Get:90 http://ftpmaster.internal/ubuntu impish/main armhf readline-common all 8.1-2 [54.1 kB] Get:91 http://ftpmaster.internal/ubuntu impish/main armhf libreadline8 armhf 8.1-2 [114 kB] Get:92 http://ftpmaster.internal/ubuntu impish/main armhf libsqlite3-0 armhf 3.35.5-1 [512 kB] Get:93 http://ftpmaster.internal/ubuntu impish-proposed/main armhf openssl armhf 1.1.1l-1ubuntu1 [624 kB] Get:94 http://ftpmaster.internal/ubuntu impish/main armhf xz-utils armhf 5.2.5-2 [80.7 kB] Get:95 http://ftpmaster.internal/ubuntu impish/main armhf advancecomp armhf 2.1-2.1ubuntu1 [185 kB] Get:96 http://ftpmaster.internal/ubuntu impish/main armhf libctf0 armhf 2.37-5ubuntu1 [93.8 kB] Get:97 http://ftpmaster.internal/ubuntu impish/main armhf libctf-nobfd0 armhf 2.37-5ubuntu1 [93.4 kB] Get:98 http://ftpmaster.internal/ubuntu impish/main armhf binutils-arm-linux-gnueabihf armhf 2.37-5ubuntu1 [3062 kB] Get:99 http://ftpmaster.internal/ubuntu impish/main armhf libbinutils armhf 2.37-5ubuntu1 [492 kB] Get:100 http://ftpmaster.internal/ubuntu impish/main armhf binutils armhf 2.37-5ubuntu1 [3172 B] Get:101 http://ftpmaster.internal/ubuntu impish/main armhf binutils-common armhf 2.37-5ubuntu1 [212 kB] Get:102 http://ftpmaster.internal/ubuntu impish/main armhf libisl23 armhf 0.24-1 [517 kB] Get:103 http://ftpmaster.internal/ubuntu impish-proposed/main armhf cpp-11 armhf 11.2.0-5ubuntu1 [48.0 MB] Get:104 http://ftpmaster.internal/ubuntu impish/main armhf g++ armhf 4:11.2.0-1ubuntu1 [1400 B] Get:105 http://ftpmaster.internal/ubuntu impish/main armhf gcc armhf 4:11.2.0-1ubuntu1 [5126 B] Get:106 http://ftpmaster.internal/ubuntu impish/main armhf cpp armhf 4:11.2.0-1ubuntu1 [27.7 kB] Get:107 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libgcc-11-dev armhf 11.2.0-5ubuntu1 [838 kB] Get:108 http://ftpmaster.internal/ubuntu impish-proposed/main armhf gcc-11 armhf 11.2.0-5ubuntu1 [54.8 MB] Get:109 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libstdc++-11-dev armhf 11.2.0-5ubuntu1 [2125 kB] Get:110 http://ftpmaster.internal/ubuntu impish-proposed/main armhf g++-11 armhf 11.2.0-5ubuntu1 [52.3 MB] Get:111 http://ftpmaster.internal/ubuntu impish/main armhf dpkg-dev all 1.20.9ubuntu2 [937 kB] Get:112 http://ftpmaster.internal/ubuntu impish/main armhf libdpkg-perl all 1.20.9ubuntu2 [233 kB] Get:113 http://ftpmaster.internal/ubuntu impish/main armhf lto-disabled-list all 16 [12.5 kB] Get:114 http://ftpmaster.internal/ubuntu impish/main armhf build-essential armhf 12.9ubuntu1 [4740 B] Get:115 http://ftpmaster.internal/ubuntu impish/universe armhf g++-10 armhf 10.3.0-8ubuntu1 [8458 kB] Get:116 http://ftpmaster.internal/ubuntu impish/universe armhf gcc-10 armhf 10.3.0-8ubuntu1 [15.1 MB] Get:117 http://ftpmaster.internal/ubuntu impish/main armhf libstdc++-10-dev armhf 10.3.0-8ubuntu1 [1961 kB] Get:118 http://ftpmaster.internal/ubuntu impish/main armhf libgcc-10-dev armhf 10.3.0-8ubuntu1 [812 kB] Get:119 http://ftpmaster.internal/ubuntu impish/universe armhf cpp-10 armhf 10.3.0-8ubuntu1 [7426 kB] Get:120 http://ftpmaster.internal/ubuntu impish/main armhf gcc-10-base armhf 10.3.0-8ubuntu1 [21.0 kB] Get:121 http://ftpmaster.internal/ubuntu impish/main armhf libassuan0 armhf 2.5.5-1 [31.4 kB] Get:122 http://ftpmaster.internal/ubuntu impish/main armhf pinentry-curses armhf 1.1.1-1 [32.9 kB] Get:123 http://ftpmaster.internal/ubuntu impish/main armhf gpg armhf 2.2.20-1ubuntu4 [428 kB] Get:124 http://ftpmaster.internal/ubuntu impish/main armhf gpgconf armhf 2.2.20-1ubuntu4 [108 kB] Get:125 http://ftpmaster.internal/ubuntu impish/main armhf gpg-agent armhf 2.2.20-1ubuntu4 [196 kB] Get:126 http://ftpmaster.internal/ubuntu impish/main armhf pkgbinarymangler all 148 [32.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 239 MB in 12s (20.8 MB/s) (Reading database ... 12870 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.18-4ubuntu1_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.18-4ubuntu1) over (1:4.4.17-1ubuntu3) ... Preparing to unpack .../libnsl-dev_1.3.0-2_armhf.deb ... Unpacking libnsl-dev:armhf (1.3.0-2) over (1.3.0-0ubuntu3) ... Preparing to unpack .../libc6-dev_2.34-0ubuntu2_armhf.deb ... Unpacking libc6-dev:armhf (2.34-0ubuntu2) over (2.33-0ubuntu5) ... Preparing to unpack .../libc-dev-bin_2.34-0ubuntu2_armhf.deb ... Unpacking libc-dev-bin (2.34-0ubuntu2) over (2.33-0ubuntu5) ... Preparing to unpack .../libcrypt1_1%3a4.4.18-4ubuntu1_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.18-4ubuntu1) over (1:4.4.17-1ubuntu3) ... Setting up libcrypt1:armhf (1:4.4.18-4ubuntu1) ... (Reading database ... 12876 files and directories currently installed.) Preparing to unpack .../libtirpc-common_1.3.2-2_all.deb ... Unpacking libtirpc-common (1.3.2-2) over (1.3.1-1build1) ... Setting up libtirpc-common (1.3.2-2) ... 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Setting up libss2:armhf (1.46.3-1ubuntu3) ... Setting up libperl5.32:armhf (5.32.1-3ubuntu3) ... Setting up logsave (1.46.3-1ubuntu3) ... Setting up libubsan1:armhf (11.2.0-5ubuntu1) ... Setting up advancecomp (2.1-2.1ubuntu1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.175-2.1ubuntu1) ... Setting up libgcc-11-dev:armhf (11.2.0-5ubuntu1) ... Setting up mount (2.36.1-8ubuntu1) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libcrypt-dev:armhf (1:4.4.18-4ubuntu1) ... Setting up libcryptsetup12:armhf (2:2.3.6-0ubuntu1) ... Setting up libbinutils:armhf (2.37-5ubuntu1) ... Setting up libisl23:armhf (0.24-1) ... Setting up libc-dev-bin (2.34-0ubuntu2) ... Setting up openssl (1.1.1l-1ubuntu1) ... Setting up readline-common (8.1-2) ... Setting up libcc1-0:armhf (11.2.0-5ubuntu1) ... Setting up libprocps8:armhf (2:3.3.17-5ubuntu3) ... Setting up cpp-10 (10.3.0-8ubuntu1) ... Setting up libkmod2:armhf (28-1ubuntu4) ... Setting up libctf0:armhf (2.37-5ubuntu1) ... Setting up pinentry-curses (1.1.1-1) ... Setting up cpp-11 (11.2.0-5ubuntu1) ... Setting up pkgbinarymangler (148) ... Setting up libgcc-10-dev:armhf (10.3.0-8ubuntu1) ... Setting up libreadline8:armhf (8.1-2) ... Setting up e2fsprogs (1.46.3-1ubuntu3) ... Setting up perl (5.32.1-3ubuntu3) ... Setting up libdpkg-perl (1.20.9ubuntu2) ... Setting up cpp (4:11.2.0-1ubuntu1) ... Setting up procps (2:3.3.17-5ubuntu3) ... update-alternatives: warning: alternative /usr/bin/w.procps (part of link group w) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/w is dangling; it will be updated with best choice Setting up gpgconf (2.2.20-1ubuntu4) ... Setting up libc6-dev:armhf (2.34-0ubuntu2) ... Setting up binutils-arm-linux-gnueabihf (2.37-5ubuntu1) ... Setting up gpg (2.2.20-1ubuntu4) ... Setting up libstdc++-10-dev:armhf (10.3.0-8ubuntu1) ... Setting up gpg-agent (2.2.20-1ubuntu4) ... Setting up binutils (2.37-5ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu2) ... Setting up gcc-10 (10.3.0-8ubuntu1) ... Setting up libstdc++-11-dev:armhf (11.2.0-5ubuntu1) ... Setting up gcc-11 (11.2.0-5ubuntu1) ... Setting up g++-10 (10.3.0-8ubuntu1) ... Setting up g++-11 (11.2.0-5ubuntu1) ... Setting up gcc (4:11.2.0-1ubuntu1) ... Setting up g++ (4:11.2.0-1ubuntu1) ... Setting up build-essential (12.9ubuntu1) ... Setting up systemd-timesyncd (248.3-1ubuntu7) ... Installing new version of config file /etc/systemd/timesyncd.conf ... Setting up systemd (248.3-1ubuntu7) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (248.3-1ubuntu7) ... Processing triggers for libc-bin (2.34-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-21678578 armhf impish-proposed -c chroot:build-PACKAGEBUILD-21678578 --arch=armhf --dist=impish-proposed --nolog libmaus2_2.0.768+dfsg-2.dsc Initiating build PACKAGEBUILD-21678578 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-156-generic #163-Ubuntu SMP Thu Aug 19 23:31:36 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-071.buildd +==============================================================================+ | libmaus2 2.0.768+dfsg-2 (armhf) Fri, 10 Sep 2021 18:16:33 +0000 | +==============================================================================+ Package: libmaus2 Version: 2.0.768+dfsg-2 Source Version: 2.0.768+dfsg-2 Distribution: impish-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-21678578/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libmaus2_2.0.768+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libmaus2-bSgALA/libmaus2-2.0.768+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libmaus2-bSgALA' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Hlpgm1/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Hlpgm1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Hlpgm1/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Hlpgm1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Hlpgm1/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-Hlpgm1/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (49.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: cpp-10 g++-10 gcc-10 gcc-10-base libgcc-10-dev libstdc++-10-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 650 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Hlpgm1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [650 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 650 B in 0s (53.7 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13945 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libsecrecy-dev, pkg-config, zlib1g-dev Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libsecrecy-dev, pkg-config, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-libmaus2-dummy' in '/<>/resolver-Hlpgm1/apt_archive/sbuild-build-depends-libmaus2-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libmaus2-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Hlpgm1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Hlpgm1/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Hlpgm1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Hlpgm1/apt_archive ./ Sources [525 B] Get:5 copy:/<>/resolver-Hlpgm1/apt_archive ./ Packages [602 B] Fetched 2090 B in 0s (63.5 kB/s) Reading package lists... Reading package lists... Install libmaus2 build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-10 libstdc++-10-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libassuan-dev libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgpg-error-dev libgpgme-dev libgpgme11 libicu67 libmagic-mgc libmagic1 libpipeline1 libsecrecy-dev libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db nettle-dev pkg-config po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gmp-doc libgmp10-doc libmpfr-dev libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs dirmngr gpg-wks-client gpgsm libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libassuan-dev libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgpg-error-dev libgpgme-dev libgpgme11 libicu67 libmagic-mgc libmagic1 libpipeline1 libsecrecy-dev libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db nettle-dev pkg-config po-debconf sbuild-build-depends-libmaus2-dummy zlib1g-dev 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 20.6 MB of archives. After this operation, 67.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Hlpgm1/apt_archive ./ sbuild-build-depends-libmaus2-dummy 0.invalid.0 [696 B] Get:2 http://ftpmaster.internal/ubuntu impish/main armhf bsdextrautils armhf 2.36.1-8ubuntu1 [80.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed/main armhf groff-base armhf 1.22.4-7 [870 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main armhf libpipeline1 armhf 1.5.3-1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main armhf man-db armhf 2.9.4-2 [1118 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main armhf libelf1 armhf 0.185-1 [39.9 kB] Get:8 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libglib2.0-0 armhf 2.68.4-1build1 [1288 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main armhf libicu67 armhf 67.1-7ubuntu1 [9788 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main armhf libxml2 armhf 2.9.12+dfsg-3ubuntu1 [598 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main armhf libmagic-mgc armhf 1:5.39-3 [228 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main armhf libmagic1 armhf 1:5.39-3 [71.7 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main armhf file armhf 1:5.39-3 [22.7 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main armhf gettext-base armhf 0.21-4ubuntu3 [36.0 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main armhf libsigsegv2 armhf 2.13-1ubuntu1 [13.4 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main armhf m4 armhf 1.4.18-5ubuntu1 [192 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main armhf autoconf all 2.69-14 [293 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main armhf autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main armhf automake all 1:1.16.4-1ubuntu1 [557 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main armhf autopoint all 0.21-4ubuntu3 [422 kB] Get:21 http://ftpmaster.internal/ubuntu impish/universe armhf d-shlibs all 0.99 [9656 B] Get:22 http://ftpmaster.internal/ubuntu impish/main armhf libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main armhf libtool all 2.4.6-15 [161 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main armhf dh-autoreconf all 20 [16.1 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu impish/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main armhf dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:29 http://ftpmaster.internal/ubuntu impish/main armhf libdw1 armhf 0.185-1 [198 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main armhf debugedit armhf 1:5.0-0ubuntu2 [43.9 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main armhf dwz armhf 0.14-1 [90.7 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main armhf gettext armhf 0.21-4ubuntu3 [755 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main armhf debhelper all 13.3.4ubuntu2 [921 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main armhf libgpg-error-dev armhf 1.38-2build1 [107 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main armhf libassuan-dev armhf 2.5.5-1 [90.4 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg-1ubuntu2 [8072 B] Get:39 http://ftpmaster.internal/ubuntu impish/main armhf libgmp-dev armhf 2:6.2.1+dfsg-1ubuntu2 [264 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main armhf libgpgme11 armhf 1.14.0-1ubuntu4 [114 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main armhf pkg-config armhf 0.29.2-1ubuntu1 [43.4 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main armhf libgpgme-dev armhf 1.14.0-1ubuntu4 [330 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main armhf nettle-dev armhf 3.7.3-1 [1120 kB] Get:44 http://ftpmaster.internal/ubuntu impish/universe armhf libsecrecy-dev armhf 0.0.2+dfsg-2 [19.9 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu7 [157 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.6 MB in 1s (19.9 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13945 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.36.1-8ubuntu1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_armhf.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../05-libelf1_0.185-1_armhf.deb ... Unpacking libelf1:armhf (0.185-1) ... 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Setting up libmagic1:armhf (1:5.39-3) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.39-3) ... Setting up libgpgme11:armhf (1.14.0-1ubuntu4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libgmpxx4ldbl:armhf (2:6.2.1+dfsg-1ubuntu2) ... Setting up libgpg-error-dev (1.38-2build1) ... Setting up libsigsegv2:armhf (2.13-1ubuntu1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up libassuan-dev (2.5.5-1) ... Setting up d-shlibs (0.99) ... Setting up libgpgme-dev (1.14.0-1ubuntu4) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu7) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:armhf (0.185-1) ... Setting up libxml2:armhf (2.9.12+dfsg-3ubuntu1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libdw1:armhf (0.185-1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libgmp-dev:armhf (2:6.2.1+dfsg-1ubuntu2) ... Setting up nettle-dev:armhf (3.7.3-1) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libsecrecy-dev:armhf (0.0.2+dfsg-2) ... Setting up automake (1:1.16.4-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up sbuild-build-depends-libmaus2-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-156-generic arm64 (armv7l) Toolchain package versions: binutils_2.37-5ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-10_10.3.0-8ubuntu1 g++-11_11.2.0-5ubuntu1 gcc-10_10.3.0-8ubuntu1 gcc-11_11.2.0-5ubuntu1 libc6-dev_2.34-0ubuntu2 libstdc++-10-dev_10.3.0-8ubuntu1 libstdc++-11-dev_11.2.0-5ubuntu1 libstdc++6_11.2.0-5ubuntu1 linux-libc-dev_5.13.0-16.16 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.9 autoconf_2.69-14 automake_1:1.16.4-1ubuntu1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu3 base-passwd_3.5.51 bash_5.1-3ubuntu1 binutils_2.37-5ubuntu1 binutils-arm-linux-gnueabihf_2.37-5ubuntu1 binutils-common_2.37-5ubuntu1 bsdextrautils_2.36.1-8ubuntu1 bsdutils_1:2.36.1-8ubuntu1 build-essential_12.9ubuntu1 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 coreutils_8.32-4ubuntu2 cpp_4:11.2.0-1ubuntu1 cpp-10_10.3.0-8ubuntu1 cpp-11_11.2.0-5ubuntu1 d-shlibs_0.99 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_4.11.2 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu2 file_1:5.39-3 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-10_10.3.0-8ubuntu1 g++-11_11.2.0-5ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-10_10.3.0-8ubuntu1 gcc-10-base_10.3.0-8ubuntu1 gcc-11_11.2.0-5ubuntu1 gcc-11-base_11.2.0-5ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu1 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libapparmor1_3.0.3-0ubuntu1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build21.04.0 libasan6_11.2.0-5ubuntu1 libassuan-dev_2.5.5-1 libassuan0_2.5.5-1 libatomic1_11.2.0-5ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu2 libaudit1_1:3.0-2ubuntu2 libbinutils_2.37-5ubuntu1 libblkid1_2.36.1-8ubuntu1 libbz2-1.0_1.0.8-4ubuntu3 libc-bin_2.34-0ubuntu2 libc-dev-bin_2.34-0ubuntu2 libc6_2.34-0ubuntu2 libc6-dev_2.34-0ubuntu2 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11.2.0-5ubuntu1 libcom-err2_1.46.3-1ubuntu3 libcrypt-dev_1:4.4.18-4ubuntu1 libcrypt1_1:4.4.18-4ubuntu1 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-5ubuntu1 libctf0_2.37-5ubuntu1 libdb5.3_5.3.28+dfsg1-0.8ubuntu1 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu1 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-1 libelf1_0.185-1 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu2 libffi8_3.4.2-1ubuntu3 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-8ubuntu1 libgcc-11-dev_11.2.0-5ubuntu1 libgcc-s1_11.2.0-5ubuntu1 libgcrypt20_1.8.7-5ubuntu1 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libglib2.0-0_2.68.4-1build1 libgmp-dev_2:6.2.1+dfsg-1ubuntu2 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgmpxx4ldbl_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-5ubuntu1 libgpg-error-dev_1.38-2build1 libgpg-error0_1.38-2build1 libgpgme-dev_1.14.0-1ubuntu4 libgpgme11_1.14.0-1ubuntu4 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.1-1 libip4tc2_1.8.7-1ubuntu2 libisl23_0.24-1 libjson-c5_0.15-2build2 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu4 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8ubuntu1 libmpc3_1.2.0-1build1 libmpfr6_4.1.0-3build1 libncurses6_6.2+20201114-2build1 libncursesw6_6.2+20201114-2build1 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1build1 libpam-modules_1.3.1-5ubuntu8 libpam-modules-bin_1.3.1-5ubuntu8 libpam-runtime_1.3.1-5ubuntu8 libpam0g_1.3.1-5ubuntu8 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build3 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3build3 libprocps8_2:3.3.17-5ubuntu3 libreadline8_8.1-2 libseccomp2_2.5.1-1ubuntu1 libsecrecy-dev_0.0.2+dfsg-2 libselinux1_3.1-3build1 libsemanage-common_3.1-1ubuntu1 libsemanage1_3.1-1ubuntu1 libsepol1_3.1-1ubuntu1 libsigsegv2_2.13-1ubuntu1 libsmartcols1_2.36.1-8ubuntu1 libsqlite3-0_3.35.5-1 libss2_1.46.3-1ubuntu3 libssl1.1_1.1.1l-1ubuntu1 libstdc++-10-dev_10.3.0-8ubuntu1 libstdc++-11-dev_11.2.0-5ubuntu1 libstdc++6_11.2.0-5ubuntu1 libsub-override-perl_0.09-2 libsystemd0_248.3-1ubuntu7 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2build1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-5ubuntu1 libuchardet0_0.0.7-1 libudev1_248.3-1ubuntu7 libunistring2_0.9.10-6 libuuid1_2.36.1-8ubuntu1 libxml2_2.9.12+dfsg-3ubuntu1 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.13.0-16.16 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu2 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8ubuntu1 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 nettle-dev_3.7.3-1 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 readline-common_8.1-2 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libmaus2-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_248.3-1ubuntu7 systemd-sysv_248.3-1ubuntu7 systemd-timesyncd_248.3-1ubuntu7 sysvinit-utils_2.96-7ubuntu1 tar_1.34+dfsg-1build1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jun 9 18:36:58 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "etienne.mollier@mailoo.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libmaus2_2.0.768+dfsg-2.dsc dpkg-source: info: extracting libmaus2 in /<>/libmaus2-2.0.768+dfsg dpkg-source: info: unpacking libmaus2_2.0.768+dfsg.orig.tar.xz dpkg-source: info: unpacking libmaus2_2.0.768+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling-error-in-header.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-21678578 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-21678578 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-21678578 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libmaus2 dpkg-buildpackage: info: source version 2.0.768+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:6: installing './compile' configure.ac:4: installing './config.guess' configure.ac:4: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: Configuring for source in directory . checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking target system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking how to create a pax tar archive... gnutar checking dependency style of gcc... none checking whether we are cross compiling... no checking for bash... /usr/bin/bash checking for base64... /usr/bin/base64 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of g++... none checking whether host cpu is x86_64... no checking whether host os is GNU/Linux... no checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... no checking size of unsigned long... 4 checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking ws2tcpip.h usability... no checking ws2tcpip.h presence... no checking for ws2tcpip.h... no checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for unistd.h... (cached) yes checking linux/sysctl.h usability... yes checking linux/sysctl.h presence... yes checking for linux/sysctl.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking for dlfcn.h... (cached) yes checking sys/prctl.h usability... yes checking sys/prctl.h presence... yes checking for sys/prctl.h... yes checking libunwind.h usability... no checking libunwind.h presence... no checking for libunwind.h... no checking for unw_backtrace in -lunwind... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib >= 0... yes checking for libcurl >= 7.47.0... no checking for zlib >= 0... yes checking whether we can compile a zlib program... yes checking snappy.h usability... no checking snappy.h presence... no checking for snappy.h... no checking libdeflate.h usability... no checking libdeflate.h presence... no checking for libdeflate.h... no checking for GetProcessMemoryInfo... no checking for dlopen... yes checking for dlerror... yes checking for dlsym... yes checking for dlclose... yes checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... no checking for backtrace... yes checking for gethostname... yes checking for fsync... yes checking for dup2... yes checking for execv... yes checking for mkstemp... yes checking for fcntl... yes checking for pipe... yes checking for fork... yes checking for symlink... yes checking for waitpid... yes checking for gethostbyname... yes checking for gethostbyname2... yes checking for prctl... yes checking whether SIGPIPE exists... yes checking whether SIGHUP exists... yes checking whether pid_t exists... yes checking whether getpid exists... yes checking whether O_RDONLY... yes checking whether O_WRONLY... yes checking whether O_RDWR... yes checking whether O_CREAT... yes checking whether O_TRUNC... yes checking whether OFF_T... yes checking whether lseek function exists... yes checking whether read function exists... yes checking whether fstat function exists... yes checking whether stat function exists... yes checking whether fstatfs function exists... yes checking whether sysconf function exists... yes checking whether write function exists... yes checking whether WIFEXITED exists... yes checking whether WEXITSTATUS exists... yes checking whether the C++ compiler supports the -std=c++17 flag... yes checking whether the C++ compiler supports the -msse4 flag... no checking whether the C++ compiler supports the -msse2 flag... no checking whether the C++ compiler supports the -mssse3 flag... no checking whether the C++ compiler supports the -msse4.1 flag... no checking whether the C++ compiler supports the -mavx flag... no checking whether the C++ compiler supports the -mavx2 flag... no checking smmintrin.h usability... no checking smmintrin.h presence... no checking for smmintrin.h... no checking immintrin.h usability... no checking immintrin.h presence... no checking for immintrin.h... no checking whether the C++ compiler supports __builtin_cpu_supports... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... no checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... no checking cstdint usability... yes checking cstdint presence... yes checking for cstdint... yes checking whether the C++ compiler supports the -msse4 flag... no checking for open with 2 arguments... yes checking for open with 3 arguments... yes checking for close... yes checking for O_NONBLOCK... yes checking for O_LARGEFILE... yes checking for O_BINARY... no checking for ssize_t... yes checking for socklen_t... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether the C++ compiler supports the -rdynamic flag... yes checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking whether std::move exists... yes checking whether byte ordering is bigendian... no checking for psapi.h... no checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking whether getpagesize is present... yes checking for unsigned __int128... no checking whether we can compile a program using the gmp library... yes checking for libsecrecy >= 0.0.0... yes checking whether we can compile a libsecrecy program... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>/libmaus2-2.0.768+dfsg' make all-recursive make[2]: Entering directory '/<>/libmaus2-2.0.768+dfsg' Making all in src make[3]: Entering directory '/<>/libmaus2-2.0.768+dfsg/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderBase.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderBase.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderBase.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-StrCmpNum.lo `test -f 'libmaus2/bambam/StrCmpNum.cpp' || echo './'`libmaus2/bambam/StrCmpNum.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGenerator.lo `test -f 'libmaus2/util/TempFileNameGenerator.cpp' || echo './'`libmaus2/util/TempFileNameGenerator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-Phred.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-StrCmpNum.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGenerator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/la-Phred.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGeneratorState.lo `test -f 'libmaus2/util/TempFileNameGeneratorState.cpp' || echo './'`libmaus2/util/TempFileNameGeneratorState.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -o libmaus2/bambam/la-StrCmpNum.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGeneratorState.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ArgInfo.lo `test -f 'libmaus2/util/ArgInfo.cpp' || echo './'`libmaus2/util/ArgInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgInfo.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -o libmaus2/util/la-TempFileNameGenerator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-BitList.lo `test -f 'libmaus2/util/BitList.cpp' || echo './'`libmaus2/util/BitList.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/BitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-BitList.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/BitList.cpp -o libmaus2/util/la-BitList.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -o libmaus2/util/la-ArgInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-VarBitList.lo `test -f 'libmaus2/util/VarBitList.cpp' || echo './'`libmaus2/util/VarBitList.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-VarBitList.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -o libmaus2/util/la-VarBitList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Concat.lo `test -f 'libmaus2/util/Concat.cpp' || echo './'`libmaus2/util/Concat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Concat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Concat.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -o libmaus2/bambam/la-BamAlignmentDecoderBase.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Concat.cpp -o libmaus2/util/la-Concat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ConcatRequest.lo `test -f 'libmaus2/util/ConcatRequest.cpp' || echo './'`libmaus2/util/ConcatRequest.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConcatRequest.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ConsoleColor.lo `test -f 'libmaus2/util/ConsoleColor.cpp' || echo './'`libmaus2/util/ConsoleColor.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConsoleColor.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -o libmaus2/util/la-ConcatRequest.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -o libmaus2/util/la-ConsoleColor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-DynamicLoading.lo `test -f 'libmaus2/util/DynamicLoading.cpp' || echo './'`libmaus2/util/DynamicLoading.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -o libmaus2/util/la-TempFileNameGeneratorState.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-DynamicLoading.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-GetFileSize.lo `test -f 'libmaus2/util/GetFileSize.cpp' || echo './'`libmaus2/util/GetFileSize.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GetFileSize.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Histogram.lo `test -f 'libmaus2/util/Histogram.cpp' || echo './'`libmaus2/util/Histogram.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Histogram.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Histogram.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -o libmaus2/util/la-DynamicLoading.o >/dev/null 2>&1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector libmaus2::util::Histogram::getKeyVector()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-HistogramSet.lo `test -f 'libmaus2/util/HistogramSet.cpp' || echo './'`libmaus2/util/HistogramSet.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector > libmaus2::util::Histogram::getFreqSymVector()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/Histogram.hpp:23, from libmaus2/util/Histogram.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-HistogramSet.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Histogram.cpp -o libmaus2/util/la-Histogram.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -o libmaus2/util/la-HistogramSet.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-IncreasingList.lo `test -f 'libmaus2/util/IncreasingList.cpp' || echo './'`libmaus2/util/IncreasingList.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IncreasingList.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-IntervalTree.lo `test -f 'libmaus2/util/IntervalTree.cpp' || echo './'`libmaus2/util/IntervalTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IntervalTree.o In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/IncreasingList.hpp:23, from libmaus2/util/IncreasingList.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/IncreasingList.hpp:23, from libmaus2/util/IncreasingList.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static void libmaus2::util::IncreasingList::test(const std::vector&)’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -o libmaus2/util/la-IncreasingList.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -o libmaus2/util/la-IntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-GenericIntervalTree.lo `test -f 'libmaus2/util/GenericIntervalTree.cpp' || echo './'`libmaus2/util/GenericIntervalTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GenericIntervalTree.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-LookupIntervalTree.lo `test -f 'libmaus2/util/LookupIntervalTree.cpp' || echo './'`libmaus2/util/LookupIntervalTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LookupIntervalTree.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-md5_interface.lo `test -f 'libmaus2/digest/md5_interface.cpp' || echo './'`libmaus2/digest/md5_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5_interface.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -o libmaus2/util/la-GetFileSize.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -o libmaus2/util/la-LookupIntervalTree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -o libmaus2/digest/la-md5_interface.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -o libmaus2/util/la-GenericIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-MemUsage.lo `test -f 'libmaus2/util/MemUsage.cpp' || echo './'`libmaus2/util/MemUsage.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/MemUsage.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-MemUsage.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-nstat.lo `test -f 'libmaus2/util/nstat.cpp' || echo './'`libmaus2/util/nstat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/nstat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-nstat.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/SaturatingCounter.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-SaturatingCounter.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-StringSerialisation.lo `test -f 'libmaus2/util/StringSerialisation.cpp' || echo './'`libmaus2/util/StringSerialisation.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 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-pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8String.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8String.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndexDecoder.lo `test -f 'libmaus2/util/Utf8BlockIndexDecoder.cpp' || echo './'`libmaus2/util/Utf8BlockIndexDecoder.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Utf8BlockIndex.lo `test -f 'libmaus2/util/Utf8BlockIndex.cpp' || echo './'`libmaus2/util/Utf8BlockIndex.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Utf8BlockIndex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8BlockIndexDecoder.cpp -o libmaus2/util/la-Utf8BlockIndexDecoder.o >/dev/null 2>&1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/util/Utf8BlockIndex.hpp:22, from libmaus2/util/Utf8BlockIndex.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/util/Utf8BlockIndex.hpp:22, from libmaus2/util/Utf8BlockIndex.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static libmaus2::util::Utf8BlockIndex::unique_ptr_type libmaus2::util::Utf8BlockIndex::constructFromUtf8File(const string&, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Utf8BlockIndex.cpp -o libmaus2/util/la-Utf8BlockIndex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-LocalBaseConstants.lo `test -f 'libmaus2/lcs/LocalBaseConstants.cpp' || echo './'`libmaus2/lcs/LocalBaseConstants.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-LocalBaseConstants.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include 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-D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathToken.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathTokenVector.lo `test -f 'libmaus2/fastx/RefPathTokenVector.cpp' || echo './'`libmaus2/fastx/RefPathTokenVector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathTokenVector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -o libmaus2/fastx/la-RefPathToken.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -o libmaus2/fastx/la-RefPathTokenVector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-AlignmentStatistics.lo `test -f 'libmaus2/lcs/AlignmentStatistics.cpp' || echo './'`libmaus2/lcs/AlignmentStatistics.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignmentStatistics.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-SingleWordDNABitBuffer.lo `test -f 'libmaus2/fastx/SingleWordDNABitBuffer.cpp' || echo './'`libmaus2/fastx/SingleWordDNABitBuffer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo `test -f 'libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp' || echo './'`libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -o libmaus2/lcs/la-AlignmentStatistics.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -o libmaus2/fastx/la-SingleWordDNABitBuffer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-AlignerFactory.lo `test -f 'libmaus2/lcs/AlignerFactory.cpp' || echo './'`libmaus2/lcs/AlignerFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-BandedAlignerFactory.lo `test -f 'libmaus2/lcs/BandedAlignerFactory.cpp' || echo './'`libmaus2/lcs/BandedAlignerFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-BandedAlignerFactory.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo './'`libmaus2/dazzler/align/TraceBlock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TraceBlock.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/la-TraceBlock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/la-ApproximateRun.o >/dev/null 2>&1 In file included from libmaus2/lcs/AlignerFactory.cpp:27: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 912 | if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo `test -f 'libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp' || echo './'`libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapMeta.lo `test -f 'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/la-BandedAlignerFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -o libmaus2/lcs/la-AlignerFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TandemVector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/math/la-GmpInteger.lo `test -f 'libmaus2/math/GmpInteger.cpp' || echo './'`libmaus2/math/GmpInteger.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -o libmaus2/dazzler/align/la-TracePoint.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ArgParser.lo `test -f 'libmaus2/util/ArgParser.cpp' || echo './'`libmaus2/util/ArgParser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgParser.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -o libmaus2/math/la-GmpFloat.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE 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-DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -o libmaus2/util/la-ArgParser.o >/dev/null 2>&1 /bin/bash 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-Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o In file included from /usr/include/c++/11/vector:72, from ./libmaus2/fastx/FastAToCompact4BigBand.hpp:21, from libmaus2/fastx/FastAToCompact4BigBand.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In static member function ‘static int libmaus2::fastx::FastAToCompact4BigBand::fastaToCompact4BigBand(const std::vector >&, bool, bool, std::ostream*, std::string)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1 In file included from /usr/include/c++/11/cassert:44, from ./libmaus2/suffixsort/divsufsort.hpp:32, from ./libmaus2/util/Utf8String.hpp:27, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:19: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1404:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 812 | assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1413:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1422:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1431:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:53: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1404:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] libmaus2/fastx/FastAToCompact4BigBand.cpp:403:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 403 | } | ^ libmaus2/fastx/FastAToCompact4BigBand.cpp:403:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1413:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1422:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1431:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:143:54: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-FileRemoval.o In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = QueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankMEM.o /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/la-DNARankMEM.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainAddQueueElement.lo `test -f 'libmaus2/lcs/ChainAddQueueElement.cpp' || echo './'`libmaus2/lcs/ChainAddQueueElement.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -o libmaus2/lcs/la-ChainAddQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-Chain.lo `test -f 'libmaus2/lcs/Chain.cpp' || echo './'`libmaus2/lcs/Chain.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-Chain.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -o libmaus2/lcs/la-Chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNode.lo `test -f 'libmaus2/lcs/ChainNode.cpp' || echo './'`libmaus2/lcs/ChainNode.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNode.o In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -o libmaus2/lcs/la-ChainNode.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/la-FileRemoval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNodeInfo.lo `test -f 'libmaus2/lcs/ChainNodeInfo.cpp' || echo './'`libmaus2/lcs/ChainNodeInfo.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNodeInfo.o /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolDepthVector(std::vector >&, uint64_t) const’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -o libmaus2/lcs/la-ChainNodeInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainRemoveQueueElement.lo `test -f 'libmaus2/lcs/ChainRemoveQueueElement.cpp' || echo './'`libmaus2/lcs/ChainRemoveQueueElement.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -o libmaus2/lcs/la-ChainRemoveQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainSplayTreeNode.lo `test -f 'libmaus2/lcs/ChainSplayTreeNode.cpp' || echo './'`libmaus2/lcs/ChainSplayTreeNode.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -o libmaus2/lcs/la-ChainSplayTreeNode.o >/dev/null 2>&1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::concatenate(const std::vector >&, const string&, bool) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::SecondComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdOutputStreamFactory.lo `test -f 'libmaus2/aio/PosixFdOutputStreamFactory.cpp' || echo './'`libmaus2/aio/PosixFdOutputStreamFactory.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::FirstComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::sorting::PairFileSorting::Triple&}; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const string&, const string&, const string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -o libmaus2/aio/la-PosixFdOutputStreamFactory.o >/dev/null 2>&1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::util::MemTempFileContainer::closeOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::unique_ptr_type libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::load(const string&, uint64_t) [with _rank_type = libmaus2::rank::ImpCacheLineRank]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, long long unsigned int>}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, long long unsigned int> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: In static member function ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = IsaTriple]’, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = IsaTriple; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:901:23, inlined from ‘libmaus2::aio::SynchronousGenericOutput<_data_type>::SynchronousGenericOutput(std::ostream&, uint64_t) [with _data_type = IsaTriple]’ at ./libmaus2/aio/SynchronousGenericOutput.hpp:142:27, inlined from ‘static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’ at ./libmaus2/sorting/MergingReadBack.hpp:194:57: ./libmaus2/autoarray/AutoArray.hpp:1132:33: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1132 | array[i] = N(); | ^~~~~ ./libmaus2/autoarray/AutoArray.hpp: In static member function ‘static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’: ./libmaus2/autoarray/AutoArray.hpp:1132:44: note: ‘’ declared here 1132 | array[i] = N(); | ^~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘_ZN8libmaus27wavelet49ImpExternalWaveletGeneratorCompactHuffmanParallel17createFinalStreamISoEEyRT_y._omp_fn.0’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapHeader.lo `test -f 'libmaus2/dazzler/align/OverlapHeader.cpp' || echo './'`libmaus2/dazzler/align/OverlapHeader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapHeader.o /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -o libmaus2/dazzler/align/la-OverlapHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignment.lo `test -f 'libmaus2/bambam/BamAlignment.cpp' || echo './'`libmaus2/bambam/BamAlignment.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignment.o In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::PairFileSorting::sortPairFileTemplate(const std::vector >&, const string&, bool, bool, bool, out_type&, uint64_t, uint64_t, bool, uint64_t, std::ostream*) [with out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtSelectSSA::computeSSA(std::vector >, const string&, const string&, const string&, const std::vector >&, std::string, bool, uint64_t, uint64_t, uint64_t, uint64_t, std::ostream*)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In member function ‘libmaus2::util::ImpCompactNumberArray::unique_ptr_type libmaus2::util::ImpCompactNumberArrayGenerator::createFinal()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::rmq::RMMTree<_base_layer_type, _klog, _rmmtreedebug>::RMMTree(stream_type&, const base_layer_type&) [with stream_type = libmaus2::aio::InputStreamInstance; _base_layer_type = libmaus2::lcp::SuccinctLCP >, libmaus2::fm::SimpleSampledSA > >, libmaus2::fm::SampledISA > > >; unsigned int _klog = 3; bool _rmmtreedebug = false]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘_ZN8libmaus210suffixsort6bwtb3m12BwtSelectSSA10computeSSAESt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS9_EERKS9_SD_SD_RKSB_S9_byyyyPSo._omp_fn.0’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:31, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/rmq/RMMTree.hpp:107:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 107 | } | ^ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from ./libmaus2/rank/ImpCacheLineRank.hpp:24, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -o libmaus2/bambam/la-BamAlignment.o >/dev/null 2>&1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp:24, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillGapRequestObjects(uint64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time 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-D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo './'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp: In member function ‘virtual void libmaus2::lcs::AlignmentOneAgainstManyAVX2::process(const uint8_t*, const uint8_t*, const std::pair*, uint64_t, libmaus2::autoarray::AutoArray&)’: libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:353:25: warning: unused parameter ‘qa’ [-Wunused-parameter] 353 | uint8_t const * qa, | ~~~~~~~~~~~~~~~~^~ libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:354:25: warning: unused parameter ‘qe’ [-Wunused-parameter] 354 | uint8_t const * qe, | ~~~~~~~~~~~~~~~~^~ libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:355:53: warning: unused parameter ‘MA’ [-Wunused-parameter] 355 | std::pair const * MA, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ./libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp:24, from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:19: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 912 | if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolRead-testThreadPoolRead.o `test -f 'test/testThreadPoolRead.cpp' || echo './'`test/testThreadPoolRead.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -o libmaus2/aio/la-SecrecyOutputStreamFactory.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o `test -f 'test/testThreadPoolBgzfRead.cpp' || echo './'`test/testThreadPoolBgzfRead.cpp In file included from test/testThreadPoolBgzfRead.cpp:18: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp: In static member function ‘static int32_t libmaus2::parallel::threadpool::bgzf::BgzfHeaderDecoderBase::geti32(const char*, std::size_t)’: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:553:65: warning: integer overflow in expression of type ‘long int’ results in ‘-2147483648’ [-Woverflow] 553 | return (-(1l << 31)) + static_cast(u & 0x7FFFFFFFl); | ^~~~~~~~~~~ ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfInputReadInterface::inputThreadCallbackInterfaceBlockRead(libmaus2::parallel::threadpool::input::ThreadPoolInputInfo*)’: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:741:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 741 | while ( ce-cc >= BgzfHeaderDecoder::getCheckLength() ) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o `test -f 'test/testThreadPoolBgzfDecompress.cpp' || echo './'`test/testThreadPoolBgzfDecompress.cpp In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from test/testThreadPoolBgzfRead.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp: In static member function ‘static int32_t libmaus2::parallel::threadpool::bgzf::BgzfHeaderDecoderBase::geti32(const char*, std::size_t)’: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:553:65: warning: integer overflow in expression of type ‘long int’ results in ‘-2147483648’ [-Woverflow] 553 | return (-(1l << 31)) + static_cast(u & 0x7FFFFFFFl); | ^~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from test/testThreadPoolBgzfRead.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfInputReadInterface::inputThreadCallbackInterfaceBlockRead(libmaus2::parallel::threadpool::input::ThreadPoolInputInfo*)’: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:741:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 741 | while ( ce-cc >= BgzfHeaderDecoder::getCheckLength() ) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testThreadPoolBgzfDecompress.cpp:18: ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler::handleBgzfBlockInfo(libmaus2::parallel::threadpool::bgzf::BgzfBlockInfo::shared_ptr_type)’: ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:668:64: warning: unused variable ‘absid’ [-Wunused-variable] 668 | uint64_t const absid = ptr->absid.load(); | ^~~~~ test/testThreadPoolBgzfDecompress.cpp: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfDataDecompressedTrivialReturnInterface::dataDecompressed(libmaus2::parallel::threadpool::input::ThreadPoolInputInfo*, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfo::shared_ptr_type, uint64_t, uint64_t, uint64_t, std::shared_ptr, uint64_t, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler*, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoProcessor*)’: test/testThreadPoolBgzfDecompress.cpp:56:68: warning: unused variable ‘blockcomplete’ [-Wunused-variable] 56 | bool const blockcomplete = decwa.incrementDone(block.blockid); | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::parallel::threadpool::bgzf::BgzfInputThreadControl::BgzfInputThreadControl(libmaus2::parallel::threadpool::ThreadPool&, std::vector >, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolBamParse-testThreadPoolBamParse.o `test -f 'test/testThreadPoolBamParse.cpp' || echo './'`test/testThreadPoolBamParse.cpp In file included from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp: In static member function ‘static int32_t libmaus2::parallel::threadpool::bgzf::BgzfHeaderDecoderBase::geti32(const char*, std::size_t)’: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:553:65: warning: integer overflow in expression of type ‘long int’ results in ‘-2147483648’ [-Woverflow] 553 | return (-(1l << 31)) + static_cast(u & 0x7FFFFFFFl); | ^~~~~~~~~~~ ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfInputReadInterface::inputThreadCallbackInterfaceBlockRead(libmaus2::parallel::threadpool::input::ThreadPoolInputInfo*)’: ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:741:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 741 | while ( ce-cc >= BgzfHeaderDecoder::getCheckLength() ) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testThreadPoolBamParse.cpp:18: ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler::handleBgzfBlockInfo(libmaus2::parallel::threadpool::bgzf::BgzfBlockInfo::shared_ptr_type)’: ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:668:64: warning: unused variable ‘absid’ [-Wunused-variable] 668 | uint64_t const absid = ptr->absid.load(); | ^~~~~ test/testThreadPoolBamParse.cpp: In member function ‘void libmaus2::parallel::threadpool::bam::BamParsePackageData::dispatch()’: test/testThreadPoolBamParse.cpp:80:68: warning: unused variable ‘blockcomplete’ [-Wunused-variable] 80 | bool const blockcomplete = decwa.incrementDone(block.blockid); | ^~~~~~~~~~~~~ test/testThreadPoolBamParse.cpp: In member function ‘virtual void libmaus2::parallel::threadpool::bam::BgzfDataDecompressedBamParseInterface::dataDecompressed(libmaus2::parallel::threadpool::input::ThreadPoolInputInfo*, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfo::shared_ptr_type, uint64_t, uint64_t, uint64_t, std::shared_ptr, uint64_t, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler*, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoProcessor*)’: test/testThreadPoolBamParse.cpp:151:64: warning: unused variable ‘streamid’ [-Wunused-variable] 151 | uint64_t const streamid = inputinfo->streamid; | ^~~~~~~~ test/testThreadPoolBamParse.cpp:153:77: warning: unused variable ‘PC’ [-Wunused-variable] 153 | ThreadPoolBamParseControl * PC = dynamic_cast(processor); | ^~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::parallel::threadpool::bgzf::BgzfDecompressedBlock; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testAIO-testAIO.o `test -f 'test/testAIO.cpp' || echo './'`test/testAIO.cpp In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘libmaus2::parallel::threadpool::bgzf::BgzfInputThreadControl::ReadInfo libmaus2::parallel::threadpool::bgzf::BgzfInputThreadControl::getQ(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::parallel::threadpool::bgzf::BgzfDecompressedBlock&}; _Tp = libmaus2::parallel::threadpool::bgzf::BgzfDecompressedBlock; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::parallel::threadpool::bgzf::BgzfInputThreadControl::BgzfInputThreadControl(libmaus2::parallel::threadpool::ThreadPool&, std::vector >, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::parallel::threadpool::bgzf::BgzfDecompressedBlock; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘bool libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler::getDecompressionBlockPair(uint64_t, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfo::shared_ptr_type&, std::shared_ptr&)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfDataDecompressedTrivialReturnInterface::dataDecompressed(libmaus2::parallel::threadpool::input::ThreadPoolInputInfo*, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfo::shared_ptr_type, uint64_t, uint64_t, uint64_t, std::shared_ptr, uint64_t, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler*, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoProcessor*)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBgzfDecompress.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler::registerBgzfBlock(uint64_t, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘libmaus2::parallel::threadpool::bgzf::BgzfInputThreadControl::ReadInfo libmaus2::parallel::threadpool::bgzf::BgzfInputThreadControl::getQ(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbitbtree-testbitbtree.o `test -f 'test/testbitbtree.cpp' || echo './'`test/testbitbtree.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::parallel::threadpool::bgzf::BgzfDecompressedBlock&}; _Tp = libmaus2::parallel::threadpool::bgzf::BgzfDecompressedBlock; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::parallel::threadpool::bgzf::BgzfInputThreadControl::BgzfInputThreadControl(libmaus2::parallel::threadpool::ThreadPool&, std::vector >, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = SerObject; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -o libmaus2/bambam/la-ChecksumsFactory.o >/dev/null 2>&1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘bool libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler::getDecompressionBlockPair(uint64_t, libmaus2::parallel::threadpool::bgzf::BgzfBlockInfo::shared_ptr_type&, std::shared_ptr&)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler::checkInputQueue(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::parallel::threadpool::bam::BamParsePackageData::dispatch()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/parallel/threadpool/input/ThreadPoolInput.hpp:22, from ./libmaus2/parallel/threadpool/bgzf/BGZFInputThread.hpp:21, from ./libmaus2/parallel/threadpool/bgzf/DecompressThread.hpp:21, from test/testThreadPoolBamParse.cpp:18: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::parallel::threadpool::bgzf::BgzfBlockInfoEnqueDecompressHandler::registerBgzfBlock(uint64_t, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SerObject&}; _Tp = SerObject; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bitbtree/bitbtree.hpp:29, from test/testbitbtree.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<1, 1>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<1, 1>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testBitIO-testBitIO.o `test -f 'test/testBitIO.cpp' || echo './'`test/testBitIO.cpp /usr/include/c++/11/bits/vector.tcc: In function ‘int main()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor}; _Tp = libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor; _Alloc = std::allocator >::BlockDescriptor>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbtree-testbtree.o `test -f 'test/testbtree.cpp' || echo './'`test/testbtree.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::SerialisingMergingReadBack(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t) [with _data_type = SerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In function ‘void bubbleSortCheck()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorInput.hpp:22, from test/testBitIO.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = char**; order_type = libmaus2::aio::SerialisingBuffer >::Comparator; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testBitIO.cpp:280:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 280 | } | ^ /usr/include/c++/11/bits/vector.tcc: In destructor ‘libmaus2::sorting::SerialisingSortingBufferedOutputFile::~SerialisingSortingBufferedOutputFile()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In destructor ‘std::unique_ptr<_Tp, _Dp>::~unique_ptr() [with _Tp = libmaus2::sorting::SerialisingSortingBufferedOutputFile; _Dp = std::default_delete >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testBWTDyn-testBWTDyn.o `test -f 'test/testBWTDyn.cpp' || echo './'`test/testBWTDyn.cpp /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector::BlockDescriptor> libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t, uint64_t) [with _data_type = SerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘libmaus2::sorting::SerialisingSortingBufferedOutputFile<_data_type, _order_type>::merger_ptr_type libmaus2::sorting::SerialisingSortingBufferedOutputFile<_data_type, _order_type>::getMerger(uint64_t, uint64_t, int, std::ostream*) [with _data_type = SerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testBWTHufDyn-testBWTHufDyn.o `test -f 'test/testBWTHufDyn.cpp' || echo './'`test/testBWTHufDyn.cpp /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::SerialisingSortingBufferedOutputFile<_data_type, _order_type>::reduce(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, int, std::ostream*) [with _data_type = SerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/stl_vector.h: In function ‘void testSerialisingSorting()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/MemoryFile.hpp:23, from ./libmaus2/aio/MemoryFileAdapter.hpp:23, from ./libmaus2/aio/MemoryFileContainer.hpp:22, from ./libmaus2/aio/FileRemoval.hpp:22, from test/testAIO.cpp:22: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testDivSufSort-testDivSufSort.o `test -f 'test/testDivSufSort.cpp' || echo './'`test/testDivSufSort.cpp In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from test/testDivSufSort.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::util::MemTempFileContainer::closeOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In function ‘void testTempFileContainer()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitbtree/bitbtree.hpp:29, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:23, from test/testBWTHufDyn.cpp:20: /usr/include/c++/11/bits/stl_map.h: In function ‘void computeBWT(const string&, std::ostream&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In function ‘static void libmaus2::lcp::SuccinctLCP<_lf_type, _sampled_sa_type, _sampled_isa_type>::writeSuccinctLCP(lf_type&, isa_type&, lcp_type&, std::ostream&, libmaus2::util::TempFileContainer&, uint64_t, std::ostream*) [with lf_type = libmaus2::lf::LF; isa_type = libmaus2::fm::SampledISA; lcp_type = libmaus2::autoarray::AutoArray; _lf_type = libmaus2::lf::LF; _sampled_sa_type = libmaus2::fm::SimpleSampledSA; _sampled_isa_type = libmaus2::fm::SampledISA]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testDNABitWords-testDNABitWords.o `test -f 'test/testDNABitWords.cpp' || echo './'`test/testDNABitWords.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testFastRead-testFastRead.o `test -f 'test/testFastRead.cpp' || echo './'`test/testFastRead.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/Pattern.hpp:26, from test/testFastRead.cpp:22: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastInterval}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testHuffman-testHuffman.o `test -f 'test/testHuffman.cpp' || echo './'`test/testHuffman.cpp In file included from /usr/include/c++/11/vector:67, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/Pattern.hpp:26, from test/testFastRead.cpp:22: /usr/include/c++/11/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/Pattern.hpp:26, from test/testFastRead.cpp:22: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testFastRead.cpp:127:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 127 | } | ^ test/testFastRead.cpp:127:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testIsa-testIsa.o `test -f 'test/testIsa.cpp' || echo './'`test/testIsa.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testkmp-testkmp.o `test -f 'test/testkmp.cpp' || echo './'`test/testkmp.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlz-testlz.o `test -f 'test/testlz.cpp' || echo './'`test/testlz.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static bool libmaus2::util::SuccinctBorderArray::check(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_map.h: In static member function ‘static bool libmaus2::util::SuccinctBorderArray::checkFibonacci(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_map.h: In static member function ‘static bool libmaus2::util::BorderArray::checkFibonacci(uint64_t) [with value_type = unsigned int]’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void findSplitCommon(const string&, uint64_t, uint64_t, int64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 126 | } | ^ test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:126:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/vector.tcc: In function ‘void testSimpleDynamic()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 94 | } | ^ test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/testkmp.cpp:94:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/vector.tcc: In function ‘void testLazyFailureFunctionRandom(const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/BorderArray.hpp:22, from test/testkmp.cpp:21: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testRank-testRank.o `test -f 'test/testRank.cpp' || echo './'`test/testRank.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:23, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:23, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::pair, std::vector > libmaus2::huffman::EncodeTable::symsOrderedByCode() const [with unsigned int words = 1]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testHuffman.cpp:23: ./libmaus2/huffman/EncodeTable.hpp:148:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 148 | } | ^ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from test/testHuffman.cpp:27: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ test/testHuffman.cpp: In function ‘void testHuffmanTree()’: test/testHuffman.cpp:585:70: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 585 | libmaus2::huffman::HuffmanTree H(M.begin(),M.size(),true,true); | ^ test/testHuffman.cpp:601:155: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 601 | libmaus2::huffman::HuffmanTree H3(M.begin(),M.size(),true /* sort leafs by depth */,true /* assign codes */,true /* order by inner nodes by dfs */); | ^ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeInternal(N, unsigned int) [with N = long long unsigned int; _data_type = long long unsigned int; _data_iterator = std::back_insert_iterator >; _data_type basemask = 9223372036854775808; _data_type fullmask = 18446744073709551615; bool _write_safe = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:23, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/vector.tcc: In function ‘void testRangeQuantile()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/huffman/IndexLoaderBase.hpp:23, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void checkStreams64(unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testToWaveletTreeBits-testToWaveletTreeBits.o `test -f 'test/testToWaveletTreeBits.cpp' || echo './'`test/testToWaveletTreeBits.cpp In file included from ./libmaus2/bambam/BamHeader.hpp:31, from test/testlz.cpp:96: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from test/testlz.cpp:96: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/huffman/IndexLoaderBase.hpp:24, from test/testHuffman.cpp:20: /usr/include/c++/11/bits/stl_map.h: In static member function ‘static void libmaus2::wavelet::HuffmanWaveletTree::testTree(const string&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/GzipOutputStreamBuffer.hpp:24, from ./libmaus2/lz/GzipOutputStream.hpp:22, from test/testlz.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::util::ContainerGetObject >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testWaveletExternal-testWaveletExternal.o `test -f 'test/testWaveletExternal.cpp' || echo './'`test/testWaveletExternal.cpp /usr/include/c++/11/bits/stl_vector.h: In function ‘bool checkE2Append(unsigned int)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testTrie-testTrie.o `test -f 'test/testTrie.cpp' || echo './'`test/testTrie.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbandedlcs-testbandedlcs.o `test -f 'test/testbandedlcs.cpp' || echo './'`test/testbandedlcs.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple* const&>, std::tuple<>}; _Key = const libmaus2::trie::TrieState*; _Val = std::pair* const, long long unsigned int>; _KeyOfValue = std::_Select1st* const, long long unsigned int> >; _Compare = std::less*>; _Alloc = std::allocator* const, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::vector > libmaus2::trie::Trie<_char_type>::toLinearStateVector() const [with _char_type = char]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from test/testTrie.cpp:20: ./libmaus2/trie/TrieState.hpp:705:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 705 | } | ^ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree*, std::pair* const, long long unsigned int>, std::_Select1st* const, long long unsigned int> >, std::less*>, std::allocator* const, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/bitio/BitIOOutput.hpp:24, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bitio/BitIOOutput.hpp:27, from ./libmaus2/uint/uint.hpp:32, from ./libmaus2/util/SimpleHashMapKeyPrint.hpp:24, from ./libmaus2/util/SimpleHashMap.hpp:24, from ./libmaus2/trie/TrieState.hpp:22, from test/testTrie.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testTrie.cpp:20: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamwriter-testbamwriter.o `test -f 'test/testbamwriter.cpp' || echo './'`test/testbamwriter.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::wavelet::WaveletTree, unsigned int>::RangeCountStackElement&}; _Tp = libmaus2::wavelet::WaveletTree, unsigned int>::RangeCountStackElement; _Alloc = std::allocator, unsigned int>::RangeCountStackElement>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, unsigned int>::RangeCountStackElement, std::allocator, unsigned int>::RangeCountStackElement> >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector > libmaus2::wavelet::WaveletTree<_rank_type, _symbol_type>::rangeCountMax(uint64_t, uint64_t, uint64_t) const [with _rank_type = libmaus2::rank::ERank222BTemplate; _symbol_type = unsigned int]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, unsigned int>::RangeCountStackElement*, std::vector, unsigned int>::RangeCountStackElement, std::allocator, unsigned int>::RangeCountStackElement> > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, unsigned int>::RangeCountStackElement*, std::vector, unsigned int>::RangeCountStackElement, std::allocator, unsigned int>::RangeCountStackElement> > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/stl_map.h: In function ‘void testFastRank()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/rank/ChooseCache.hpp:23, from ./libmaus2/rank/CodeBase.hpp:23, from ./libmaus2/rank/EncodeCache.hpp:23, from ./libmaus2/rank/ERankBase.hpp:24, from test/testRank.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testarraydecode-testarraydecode.o `test -f 'test/testarraydecode.cpp' || echo './'`test/testarraydecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, long long unsigned int>}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, long long unsigned int> >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::map libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::enumerateSymbolsInRange(uint64_t, uint64_t) const [with _rank_type = libmaus2::rank::ImpCacheLineRank]’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from test/testsnappy.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/CompressorObject.hpp:22, from ./libmaus2/lz/SnappyCompressorObject.hpp:22, from ./libmaus2/lz/SnappyCompressorObjectFactory.hpp:22, from test/testsnappyconcat.cpp:22: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::SimpleCompressedConcatInputStreamFragment > >&}; _Tp = libmaus2::lz::SimpleCompressedConcatInputStreamFragment >; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >, std::allocator > > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/vector.tcc: In function ‘_ZN8libmaus27wavelet42ImpExternalWaveletGeneratorHuffmanParallel25createFinalStreamTemplateISoEEyRT_y._omp_fn.0’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘_ZN8libmaus27wavelet49ImpExternalWaveletGeneratorCompactHuffmanParallel17createFinalStreamINS_3aio20OutputStreamInstanceEEEyRT_y._omp_fn.0’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorHuffmanParallel::createFinalStreamTemplate(ostream_type&, uint64_t) [with ostream_type = std::basic_ostream]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/CompressorObject.hpp:22, from ./libmaus2/lz/SnappyCompressorObject.hpp:22, from ./libmaus2/lz/SnappyCompressorObjectFactory.hpp:22, from test/testsnappyconcat.cpp:22: /usr/include/c++/11/bits/stl_vector.h: In function ‘void testConcat(const string&, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from test/testsnappy.cpp:25: ./libmaus2/lz/SnappyInputStreamArray.hpp: In constructor ‘libmaus2::lz::SnappyInputStreamArray::SnappyInputStreamArray(std::istream&, iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/lz/SnappyInputStreamArray.hpp:33:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 33 | SnappyInputStreamArray(std::istream & in, iterator offa, iterator offe) | ^~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lz/SnappyInputStreamArray.hpp:33:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/lz/SnappyInputStreamArray.hpp:33:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from test/testsnappy.cpp:20: /usr/include/c++/11/bits/vector.tcc: In function ‘void testSnappyStreamDual()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsnappy.cpp:109:87: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 109 | ::libmaus2::lz::SnappyInputStreamArray SISA(istr,offsets.begin(),offsets.end()); | ^ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgunzip-testgunzip.o `test -f 'test/testgunzip.cpp' || echo './'`test/testgunzip.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testhashcollisions-testhashcollisions.o `test -f 'test/testhashcollisions.cpp' || echo './'`test/testhashcollisions.cpp In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In function ‘void testImpExternalWaveletGenerator()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::unique_ptr_type libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::load(const string&, uint64_t) [with _rank_type = libmaus2::rank::ImpCacheLineRank]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffman::ImpExternalWaveletGeneratorCompactHuffman(const libmaus2::huffman::HuffmanTree&, libmaus2::util::TempFileContainer&)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from test/testhashcollisions.cpp:23: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from test/testhashcollisions.cpp:23: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void testHashCollisions()’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplebloomcollisions-testsimplebloomcollisions.o `test -f 'test/testsimplebloomcollisions.cpp' || echo './'`test/testsimplebloomcollisions.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplehash-testsimplehash.o `test -f 'test/testsimplehash.cpp' || echo './'`test/testsimplehash.cpp /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffmanParallel::ImpExternalWaveletGeneratorHuffmanParallel(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileNameGenerator&, uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::wavelet::ImpHuffmanWaveletTree::ImpHuffmanWaveletTree(stream_type&) [with stream_type = libmaus2::aio::InputStreamInstance]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘uint64_t libmaus2::bambam::BamHeader::addChromosome(const string&, uint64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:33, from test/testWaveletExternal.cpp:28: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplecountinghash-testsimplecountinghash.o `test -f 'test/testsimplecountinghash.cpp' || echo './'`test/testsimplecountinghash.cpp In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_map.h: In function ‘void testCompactHuffman()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ test/testWaveletExternal.cpp:307:71: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 307 | libmaus2::huffman::HuffmanTree H(F.begin(),F.size(),false,true); | ^ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcachealignedalloc-testcachealignedalloc.o `test -f 'test/testcachealignedalloc.cpp' || echo './'`test/testcachealignedalloc.cpp In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In function ‘void testCompactHuffmanPar()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ test/testWaveletExternal.cpp:372:71: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 372 | libmaus2::huffman::HuffmanTree H(F.begin(),F.size(),false,true); | ^ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/bitio/BitVectorConcat.hpp:24, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/bitio/BitVectorConcat.hpp:23, from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:23, from test/testWaveletExternal.cpp:20: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsyncfastreaderbase-testsyncfastreaderbase.o `test -f 'test/testsyncfastreaderbase.cpp' || echo './'`test/testsyncfastreaderbase.cpp /usr/include/c++/11/bits/stl_map.h: In function ‘void testHuffmanWavelet()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdl-testdl.o `test -f 'test/testdl.cpp' || echo './'`test/testdl.cpp /usr/include/c++/11/bits/stl_map.h: In function ‘void testHuffmanWaveletSer()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdifenc-testdifenc.o `test -f 'test/testdifenc.cpp' || echo './'`test/testdifenc.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbwtmergeinternal-testbwtmergeinternal.o `test -f 'test/testbwtmergeinternal.cpp' || echo './'`test/testbwtmergeinternal.cpp In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastarewrite-testfastarewrite.o `test -f 'test/testfastarewrite.cpp' || echo './'`test/testfastarewrite.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::string libmaus2::aio::SingleFileFragmentMerge<_element_type>::merge(const string&, const std::vector >&) [with _element_type = libmaus2::bambam::BamIndexBinChunk]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::string libmaus2::aio::SingleFileFragmentMerge<_element_type>::merge(const string&, const std::vector >&) [with _element_type = libmaus2::bambam::BamIndexLinearChunk]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastarecode-testfastarecode.o `test -f 'test/testfastarecode.cpp' || echo './'`test/testfastarecode.cpp In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testfastarewrite.cpp:3: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::fastx::FastAReaderTemplate::RewriteInfo&}; _Tp = libmaus2::fastx::FastAReaderTemplate::RewriteInfo; _Alloc = std::allocator::RewriteInfo>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::RewriteInfo, std::allocator::RewriteInfo> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testfastarewrite.cpp:3: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector::RewriteInfo> libmaus2::fastx::FastAReaderTemplate<_reader_base_type>::rewriteFiles(const std::vector >&, const string&) [with _reader_base_type = libmaus2::aio::SynchronousFastReaderBase]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::RewriteInfo*, std::vector::RewriteInfo, std::allocator::RewriteInfo> > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamtofastq-testbamtofastq.o `test -f 'test/testbamtofastq.cpp' || echo './'`test/testbamtofastq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamrange-testbamrange.o `test -f 'test/testbamrange.cpp' || echo './'`test/testbamrange.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamdamage-testbamdamage.o `test -f 'test/testbamdamage.cpp' || echo './'`test/testbamdamage.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgamma-testgamma.o `test -f 'test/testgamma.cpp' || echo './'`test/testgamma.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdamage.cpp:3: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdamage.cpp:3: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘void testLow()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdamage.cpp:3: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘void testRandom(unsigned int)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/lz/GzipHeader.hpp:22, from ./libmaus2/lz/GzipSingleStream.hpp:22, from ./libmaus2/lz/GzipStream.hpp:22, from ./libmaus2/lz/GzipStreamWrapper.hpp:22, from ./libmaus2/lz/BufferedGzipStream.hpp:22, from test/testbamdamage.cpp:1: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::gamma::GammaRLEncoder::implicitFlush()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::gamma::Interval}; _Tp = libmaus2::gamma::Interval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::gamma::FlaggedInterval}; _Tp = libmaus2::gamma::FlaggedInterval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcompact-testcompact.o `test -f 'test/testcompact.cpp' || echo './'`test/testcompact.cpp /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::gamma::GammaRLEncoder::concatenate(const std::vector >&, const string&, bool)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/gamma/SparseGammaGapFileSet.hpp:25, from test/testgamma.cpp:44: ./libmaus2/gamma/GammaGapEncoder.hpp: In member function ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/gamma/GammaGapEncoder.hpp:154:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 154 | void encode(iterator ita, uint64_t const n) | ^~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector > libmaus2::gamma::SparseGammaGapBlockEncoderTemplate<_data_type>::encodeArray(it, it, const string&, uint64_t, uint64_t) [with it = long long unsigned int*; _data_type = long long unsigned int]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: In static member function ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = libmaus2::gamma::Interval]’, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::gamma::Interval; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:901:23, inlined from ‘libmaus2::gamma::GammaPartitionEncoder::GammaPartitionEncoder(const string&, uint64_t, uint64_t)’ at ./libmaus2/gamma/GammaPartitionEncoder.hpp:110:6, inlined from ‘void testpartitionsingle()’ at test/testgamma.cpp:1639:109: ./libmaus2/autoarray/AutoArray.hpp:1132:33: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1132 | array[i] = N(); | ^~~~~ ./libmaus2/autoarray/AutoArray.hpp: In function ‘void testpartitionsingle()’: ./libmaus2/autoarray/AutoArray.hpp:1132:44: note: ‘’ declared here 1132 | array[i] = N(); | ^~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void testintervalsingle()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘void testgammarl()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::getSplitKeys(libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::this_type&, libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::this_type&, uint64_t, uint64_t&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateIyE12mergeToDenseERNS_4util21TempFileNameGeneratorEyy._omp_fn.0’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbytetocompact-testbytetocompact.o `test -f 'test/testbytetocompact.cpp' || echo './'`test/testbytetocompact.cpp /usr/include/c++/11/bits/stl_vector.h: In function ‘static std::vector libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::getSplitKeys(const std::vector >&, const std::vector >&, uint64_t, uint64_t&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::gamma::GammaGapEncoder::merge(const std::vector > >&, const string&, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from ./libmaus2/gamma/SparseGammaGapFileSet.hpp:25, from test/testgamma.cpp:44: ./libmaus2/gamma/GammaGapEncoder.hpp: In function ‘void testgammagap()’: ./libmaus2/gamma/GammaGapEncoder.hpp:168:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 168 | encode(ita,n); | ~~~~~~^~~~~~~ ./libmaus2/gamma/GammaGapEncoder.hpp:168:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 168 | encode(ita,n); | ~~~~~~^~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2116 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::gamma::SparseGammaGapFile&}; _Tp = libmaus2::gamma::SparseGammaGapFile; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::gamma::SparseGammaGapFile; _Sequence = std::vector >; _Compare = std::less]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::gamma::SparseGammaGapMultiFile&}; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(const value_type&) [with _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Sequence = std::vector >; _Compare = std::less]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘void testflaggedpartitionsingle()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::gamma::GammaFlaggedIntervalDecoder::GammaFlaggedIntervalDecoder(const std::vector >&, uint64_t, libmaus2::gamma::GammaFlaggedIntervalDecoder::init_mode)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/vector.tcc: In function ‘void testflaggedintervalsingle()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector > libmaus2::gamma::SparseGammaGapBlockEncoderTemplate<_data_type>::encodeArray(it, it, const string&, uint64_t, uint64_t) [with it = long long unsigned int*; _data_type = libmaus2::math::UnsignedInteger<4>]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testscramtosam-testscramtosam.o `test -f 'test/testscramtosam.cpp' || echo './'`test/testscramtosam.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testpacdecode-testpacdecode.o `test -f 'test/testpacdecode.cpp' || echo './'`test/testpacdecode.cpp In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateINS_4math15UnsignedIntegerILj4EEEE12mergeToDenseERNS_4util21TempFileNameGeneratorEyy._omp_fn.0’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_map.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateIyE5mergeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEy._omp_fn.0’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st >::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator >::SparseGammaGapMergeInfo> > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_map.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateINS_4math15UnsignedIntegerILj4EEEE5mergeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEy._omp_fn.0’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::gamma::SparseGammaGapFileLevelSetTemplate<_data_type>::addFile(const string&) [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::gamma::SparseGammaGapFileLevelSetTemplate<_data_type>::addFile(const string&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testutf8split-testutf8split.o `test -f 'test/testutf8split.cpp' || echo './'`test/testutf8split.cpp In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:26, from test/testbamtofastq.cpp:19: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 279 | } | ^ ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcirchash-testcirchash.o `test -f 'test/testcirchash.cpp' || echo './'`test/testcirchash.cpp /usr/include/c++/11/bits/stl_map.h: In member function ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = libmaus2::math::UnsignedInteger<4>]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::SnappyAlignmentMergeInput::SnappyAlignmentMergeInput(const std::vector >&, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMerge() [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMerge() [with _data_type = libmaus2::math::UnsignedInteger<4>]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >::SparseGammaGapMergeInfo> >, std::_Select1st >::SparseGammaGapMergeInfo> > >, std::less, std::allocator >::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 test/testutf8split.cpp: In function ‘void testUtf8Seek(const string&)’: test/testutf8split.cpp:149:33: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 149 | while ( (w=decwr.get()) >= 0 ) | ~~~~~~~~~~~~~~~~^~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘void testsparsegammamerge()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘void testsparsegammamerge2()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘void testsparsegammamultimerge()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘void testsparsegammamultimerge2()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘bool libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::readAlignmentInternal(bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1904 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1905 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const string&, uint64_t) [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_map.h: In function ‘void testsparsegammamultifilesetmerge()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In function ‘void testsparsegammamultifilesetmergedense()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const string&, uint64_t) [with _data_type = libmaus2::math::UnsignedInteger<4>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_map.h: In function ‘void testsparsegammamultifilesetmerge2()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In function ‘void testsparsegammamultifilesetmergedense2()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/gamma/GammaGenericBase.hpp:21, from ./libmaus2/gamma/GammaGenericEncoder.hpp:21, from test/testgamma.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘void testsparsegammalevelmerge2()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘void testsparsegammalevelmerge()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateThreadPoolReader]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamAlignmentSortingCircularHashEntryOverflow::flush()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bitbtree::BitBTree::mergeConstructionTuples(std::vector::VectorConstructionTuple>&) [with unsigned int k = 8; unsigned int w = 8]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::CircularHashCollatingBamDecoder::CircularHashCollatingBamDecoder(libmaus2::bambam::BamAlignmentDecoder&, const string&, uint32_t, unsigned int, uint64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testrmmtree-testrmmtree.o `test -f 'test/testrmmtree.cpp' || echo './'`test/testrmmtree.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::unique_ptr_type libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::load(const string&, uint64_t) [with _rank_type = libmaus2::rank::ImpCacheLineRank]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::createFinalStream(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from test/testutf8split.cpp:28: ./libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp:244:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 244 | } | ^ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testutf8split.cpp:21: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static libmaus2::wavelet::ImpHuffmanWaveletTree::unique_ptr_type libmaus2::wavelet::ImpHuffmanWaveletTree::load(const string&, uint64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(const string&, const string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::wavelet::Utf8ToImpHuffmanWaveletTree::constructWaveletTree(const string&, const string&, libmaus2::huffman::HuffmanTreeNode::shared_ptr_type, uint64_t) [with bool radixsort = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::SnappyAlignmentMergeInput::SnappyAlignmentMergeInput(const std::vector >&, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcst-testcst.o `test -f 'test/testcst.cpp' || echo './'`test/testcst.cpp /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamcmp-testbamcmp.o `test -f 'test/testbamcmp.cpp' || echo './'`test/testbamcmp.cpp /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::getOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::MemTempFileContainer::openOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::MemTempFileContainer::openInputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::wavelet::ImpExternalWaveletGeneratorHuffman::ImpExternalWaveletGeneratorHuffman(const libmaus2::huffman::HuffmanTreeNode*, libmaus2::util::TempFileContainer&)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::wavelet::ImpHuffmanWaveletTree::ImpHuffmanWaveletTree(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/stl_vector.h: In member function ‘libmaus2::util::ImpCompactNumberArray::unique_ptr_type libmaus2::util::ImpCompactNumberArrayGenerator::createFinal()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/vector.tcc: In function ‘int testImpCompactArray()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamAlignmentSortingCircularHashEntryOverflow::flush()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testrmmtree.cpp:51:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 51 | } | ^ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘libmaus2::bambam::CircularHashCollatingBamDecoder::OutputBufferEntry* libmaus2::bambam::CircularHashCollatingBamDecoder::process()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bitio/CompactArray.hpp:23, from ./libmaus2/util/ImpCompactNumberArray.hpp:24, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: /usr/include/c++/11/bits/vector.tcc: In function ‘int testRMMTree()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bitbtree::BitBTree::mergeConstructionTuples(std::vector::VectorConstructionTuple>&) [with unsigned int k = 8; unsigned int w = 8]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testrmmtree.cpp:86:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 86 | } | ^ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::CircularHashCollatingBamDecoder::CircularHashCollatingBamDecoder(libmaus2::bambam::BamAlignmentDecoder&, const string&, uint32_t, unsigned int, uint64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamdif-testbamdif.o `test -f 'test/testbamdif.cpp' || echo './'`test/testbamdif.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcst.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::suffixtree::CompressedSuffixTree::Node&}; _Tp = libmaus2::suffixtree::CompressedSuffixTree::Node; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcst.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘libmaus2::suffixtree::CompressedSuffixTree::Node libmaus2::suffixtree::CompressedSuffixTree::child(const libmaus2::suffixtree::CompressedSuffixTree::Node&, int64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcst.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void libmaus2::huffman::HuffmanTreeLeaf::symbolDepthVector(std::vector >&, uint64_t) const’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testcst.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const libmaus2::huffman::HuffmanTreeInnerNode*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testcst.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::huffman::HuffmanTreeInnerNode::toDot(std::ostream&) const’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testqreorder-testqreorder.o `test -f 'test/testqreorder.cpp' || echo './'`test/testqreorder.cpp /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcst.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In static member function ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::unique_ptr_type libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate<_rank_type>::load(const string&, uint64_t) [with _rank_type = libmaus2::rank::ImpCacheLineRank]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testcst.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::wavelet::ImpHuffmanWaveletTree::init()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcst.cpp:20: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::wavelet::ImpHuffmanWaveletTree::ImpHuffmanWaveletTree(stream_type&) [with stream_type = libmaus2::aio::InputStreamInstance]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/stl_vector.h: In function ‘std::vector filter(const std::vector&, uint64_t, unsigned int, unsigned int, unsigned int)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/stl_vector.h: In function ‘std::vector filter(const std::vector&, uint64_t, unsigned int, unsigned int, unsigned int)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from test/testqreorder.cpp:22: ./libmaus2/fastx/QReorder.hpp: In constructor ‘libmaus2::fastx::QReorder4Set<_k, _value_type>::QReorder4Set(unsigned int, iterator, iterator, unsigned int) [with iterator = __gnu_cxx::__normal_iterator >; unsigned int _k = 2; _value_type = long long unsigned int]’: ./libmaus2/fastx/QReorder.hpp:868:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 868 | QReorder4Set(unsigned int l, iterator ita, iterator ite, unsigned int const rlookupbits) | ^~~~~~~~~~~~ ./libmaus2/fastx/QReorder.hpp:868:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfqbgzf-testfqbgzf.o `test -f 'test/testfqbgzf.cpp' || echo './'`test/testfqbgzf.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testqreorder.cpp:21: /usr/include/c++/11/bits/vector.tcc: In function ‘void testQReorder4Set()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testqreorder.cpp:102:75: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 102 | libmaus2::fastx::QReorder4Set QR(l,V.begin(),V.end(),2); | ^ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ test/testqreorder.cpp:147:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 147 | } | ^ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcompactfastrandom-testcompactfastrandom.o `test -f 'test/testcompactfastrandom.cpp' || echo './'`test/testcompactfastrandom.cpp In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testfqbgzf.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testfqbgzf.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testfqbgzf.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/StringSerialisation.hpp:27, from ./libmaus2/aio/FileFragment.hpp:25, from ./libmaus2/aio/ReorderConcatGenericInput.hpp:24, from ./libmaus2/fastx/CompactFastDecoder.hpp:22, from test/testcompactfastrandom.cpp:1: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::fastx::FastInterval&}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::FileFragment}; _Tp = libmaus2::aio::FileFragment; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector libmaus2::fastx::CompactFastDecoder::getDataFragments(const std::vector >&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastInterval}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamindex-testbamindex.o `test -f 'test/testbamindex.cpp' || echo './'`test/testbamindex.cpp In file included from test/testfqbgzf.cpp:38: ./libmaus2/clustering/KMeans.hpp: In function ‘static std::vector libmaus2::clustering::KMeans::kmeansCore(iterator, uint64_t, uint64_t, bool, uint64_t, double, const dissimilarity_type&) [with iterator = __gnu_cxx::__normal_iterator >; dissimilarity_type = libmaus2::clustering::KMeans::SquareDissimilary]’: ./libmaus2/clustering/KMeans.hpp:371:52: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 371 | static std::vector kmeansCore( | ^~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testfqbgzf.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::fastx::CompactFastConcatRandomAccessAdapter::CompactFastConcatRandomAccessAdapter(const std::vector >&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/StringSerialisation.hpp:27, from ./libmaus2/aio/FileFragment.hpp:25, from ./libmaus2/aio/ReorderConcatGenericInput.hpp:24, from ./libmaus2/fastx/CompactFastDecoder.hpp:22, from test/testcompactfastrandom.cpp:1: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/fastx/FastQReader.hpp:27, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfqbgzf.cpp:23: ./libmaus2/fastx/FastInterval.hpp: In static member function ‘static libmaus2::fastx::FastInterval libmaus2::fastx::FastInterval::merge(iterator, iterator) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/fastx/FastInterval.hpp:85:45: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 85 | static FastInterval merge(iterator a, iterator e) | ^~~~~ ./libmaus2/fastx/FastInterval.hpp:85:45: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testfqbgzf.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::fastx::FastInterval&}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testfqbgzf.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testfqbgzf.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::parallel::StdSynchronousConsecutiveHeap::drainPreQueue(glob_queue_type*) [with glob_queue_type = libmaus2::parallel::StdTerminatableSynchronousHeap; value_type = libmaus2::lz::BgzfThreadQueueElement; info_type = libmaus2::lz::BgzfDeflateBlockIdInfo; compare = libmaus2::lz::BgzfDeflateBlockIdComparator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamrewrite-testbamrewrite.o `test -f 'test/testbamrewrite.cpp' || echo './'`test/testbamrewrite.cpp /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::lz::BgzfDeflateParallel::drain()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::lz::BgzfDeflateParallel::flushInternal()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::lz::BgzfDeflateParallelThreadCallable::run()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from test/testfqbgzf.cpp:38: ./libmaus2/clustering/KMeans.hpp: In function ‘int main(int, char**)’: ./libmaus2/clustering/KMeans.hpp:527:53: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 527 | std::vector R = kmeansCore(V,n,k,pp,maxloops,ethres,dissimilarity); | ^ ./libmaus2/clustering/KMeans.hpp:532:61: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 532 | std::vector RC = kmeansCore(V,n,k,pp,maxloops,ethres,dissimilarity); | ^~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testfqbgzf.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ test/testfqbgzf.cpp:288:81: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 288 | indexCOS << libmaus2::fastx::FastInterval::merge(FIV.begin(),FIV.end()).serialise(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ test/testfqbgzf.cpp:298:73: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 298 | indexCOS << libmaus2::fastx::FastInterval::merge(FIV.begin(),FIV.end()).serialise(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastqstream-testfastqstream.o `test -f 'test/testfastqstream.cpp' || echo './'`test/testfastqstream.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsort-testsort.o `test -f 'test/testsort.cpp' || echo './'`test/testsort.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/fastx/CharBuffer.hpp:22, from ./libmaus2/aio/SynchronousFastReaderBase.hpp:24, from ./libmaus2/fastx/FastQReader.hpp:23, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfastqstream.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastInterval}; _Tp = libmaus2::fastx::FastInterval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void countReadsGzipFastqBlocks(const string&, const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void decodeGzipFastqBlocks(const string&, const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testexternalsort-testexternalsort.o `test -f 'test/testexternalsort.cpp' || echo './'`test/testexternalsort.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val::SingleFileFragmentMergeHeapComparator >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::enque(libmaus2::parallel::StdTerminatableSynchronousHeap<_value_type, _compare>::value_type) [with _value_type = libmaus2::lz::BgzfThreadQueueElement; _compare = libmaus2::lz::BgzfThreadQueueElementHeapComparator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::lz::BgzfInflateDeflateParallel::drain()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::lz::BgzfInflateDeflateParallel::write(const char*, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::lz::BgzfDispatchReadBlock::readBlock(libmaus2::lz::BgzfInflateParallelContext&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamParallelRewrite.hpp:23, from test/testbamrewrite.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testbamindex.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::lz::BgzfDispatchDecompressBlock::decompressBlock(libmaus2::lz::BgzfInflateParallelContext&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::lz::BgzfInflateDeflateParallel::BgzfInflateDeflateParallel(std::istream&, std::ostream&, int, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::lz::BgzfDispatchCompressBlock::compressBlock(libmaus2::lz::BgzfDeflateParallelContext&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testexternalsort.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testexternalsort.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::lz::BgzfDispatchWriteBlock::writeBlock(libmaus2::lz::BgzfDeflateParallelContext&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamParallelRewrite.hpp:23, from test/testbamrewrite.cpp:21: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamParallelRewrite.hpp:23, from test/testbamrewrite.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateDeflateParallelInputStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::BamParallelRewrite::BamParallelRewrite(std::istream&, std::ostream&, int, uint64_t, uint64_t, const std::vector*)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testbamindex.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::string libmaus2::aio::SingleFileFragmentMerge<_element_type>::merge(const string&, const std::vector >&) [with _element_type = libmaus2::bambam::BamIndexBinChunk]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::SingleFileFragmentMergeHeapComparator >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::string libmaus2::aio::SingleFileFragmentMerge<_element_type>::merge(const string&, const std::vector >&) [with _element_type = libmaus2::bambam::BamIndexLinearChunk]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testbamindex.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::aio::SortingBufferedOutput<_data_type, _order_type>::writeBuffer() [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘int main()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcollatespeed-testcollatespeed.o `test -f 'test/testcollatespeed.cpp' || echo './'`test/testcollatespeed.cpp /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static std::vector > libmaus2::sorting::MergeStepBinSearchResult::mergeSplitVector(iterator, iterator, iterator, iterator, order_type, uint64_t) [with iterator = long long unsigned int*; order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::gamma::GammaPDIndexDecoder::GammaPDIndexDecoder(const std::vector >&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::huffman::LFRankPosIndexDecoder::LFRankPosIndexDecoder(const std::vector >&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamheaderparser-testbamheaderparser.o `test -f 'test/testbamheaderparser.cpp' || echo './'`test/testbamheaderparser.cpp /usr/include/c++/11/bits/vector.tcc: In function ‘void testMultiSort()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbammergecoordinate-testbammergecoordinate.o `test -f 'test/testbammergecoordinate.cpp' || echo './'`test/testbammergecoordinate.cpp In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = unsigned int*; order_type = std::less; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::SecondComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::FirstComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::sorting::PairFileSorting::Triple&}; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/GetFileSize.hpp:23, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbammergecollate-testbammergecollate.o `test -f 'test/testbammergecollate.cpp' || echo './'`test/testbammergecollate.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘static void libmaus2::sorting::PairFileSorting::sortPairFileTemplate(const std::vector >&, const string&, bool, bool, bool, out_type&, uint64_t, uint64_t, bool, uint64_t, std::ostream*) [with out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/huffman/LFSupportBitDecoder.hpp:21, from ./libmaus2/huffman/LFSupportDecoder.hpp:21, from test/testsort.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void testpairfilesorting(uint64_t)’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void testpairfilesortingSecond(uint64_t)’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testcollatespeed.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::SnappyAlignmentMergeInput::SnappyAlignmentMergeInput(const std::vector >&, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbammergequeryname-testbammergequeryname.o `test -f 'test/testbammergequeryname.cpp' || echo './'`test/testbammergequeryname.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testcollatespeed.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamAlignmentSortingCircularHashEntryOverflow::flush()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘libmaus2::bambam::CircularHashCollatingBamDecoder::OutputBufferEntry* libmaus2::bambam::CircularHashCollatingBamDecoder::process()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testcollatespeed.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bitbtree::BitBTree::mergeConstructionTuples(std::vector::VectorConstructionTuple>&) [with unsigned int k = 8; unsigned int w = 8]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2116 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamcat-testbamcat.o `test -f 'test/testbamcat.cpp' || echo './'`test/testbamcat.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const std::vector >&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 279 | } | ^ ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘std::pair std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2116 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const std::vector >&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘bool libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::readAlignmentInternal(bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1904 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1905 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateThreadPoolReader]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2116 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:26, from test/testbammergecollate.cpp:19: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 279 | } | ^ ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector libmaus2::bambam::BamAlignmentDecoderInfo::filenameToInfo(const std::vector >&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::SnappyAlignmentMergeInput::SnappyAlignmentMergeInput(const std::vector >&, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergecoordinate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ test/testbammergecoordinate.cpp:68:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 68 | } | ^ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 279 | } | ^ ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘bool libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::readAlignmentInternal(bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple}; _Tp = libmaus2::bitbtree::BitBTree<8, 8>::VectorConstructionTuple; _Alloc = std::allocator::VectorConstructionTuple>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1904 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1905 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2116 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateThreadPoolReader]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testautoarray2d-testautoarray2d.o `test -f 'test/testautoarray2d.cpp' || echo './'`test/testautoarray2d.cpp In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamAlignmentSortingCircularHashEntryOverflow::flush()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bitbtree::BitBTree::mergeConstructionTuples(std::vector::VectorConstructionTuple>&) [with unsigned int k = 8; unsigned int w = 8]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testhist-testhist.o `test -f 'test/testhist.cpp' || echo './'`test/testhist.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::CircularHashCollatingBamDecoder::CircularHashCollatingBamDecoder(libmaus2::bambam::BamAlignmentDecoder&, const string&, uint32_t, unsigned int, uint64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::VectorConstructionTuple*, std::vector::VectorConstructionTuple, std::allocator::VectorConstructionTuple> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘bool libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::readAlignmentInternal(bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeQueyNameHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsQueryNameSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1904 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1905 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastaparse-testfastaparse.o `test -f 'test/testfastaparse.cpp' || echo './'`test/testfastaparse.cpp In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 279 | } | ^ ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateThreadPoolReader]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::BamMergeTemplate(const std::vector >&, bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeQueyNameHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsQueryNameSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamMergeQueryName.hpp:23, from test/testbammergequeryname.cpp:20: ./libmaus2/bambam/BamMergeTemplate.hpp:163:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 163 | } | ^ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbammergequeryname.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ test/testbammergequeryname.cpp:68:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 68 | } | ^ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1904 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1905 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamcat.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateThreadPoolReader]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testvalidatebamindex-testvalidatebamindex.o `test -f 'test/testvalidatebamindex.cpp' || echo './'`test/testvalidatebamindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testeditdistance-testeditdistance.o `test -f 'test/testeditdistance.cpp' || echo './'`test/testeditdistance.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplethreadpool-testsimplethreadpool.o `test -f 'test/testsimplethreadpool.cpp' || echo './'`test/testsimplethreadpool.cpp /usr/include/c++/11/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o `test -f 'test/testsimplethreadpoolbamdecode.cpp' || echo './'`test/testsimplethreadpoolbamdecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgaparraybyte-testgaparraybyte.o `test -f 'test/testgaparraybyte.cpp' || echo './'`test/testgaparraybyte.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testzlibconcat-testzlibconcat.o `test -f 'test/testzlibconcat.cpp' || echo './'`test/testzlibconcat.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/CompressorObject.hpp:22, from ./libmaus2/lz/ZlibCompressorObject.hpp:22, from ./libmaus2/lz/ZlibCompressorObjectFactory.hpp:22, from test/testzlibconcat.cpp:22: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::SimpleCompressedConcatInputStreamFragment > >&}; _Tp = libmaus2::lz::SimpleCompressedConcatInputStreamFragment >; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >, std::allocator > > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/CompressorObject.hpp:22, from ./libmaus2/lz/ZlibCompressorObject.hpp:22, from ./libmaus2/lz/ZlibCompressorObjectFactory.hpp:22, from test/testzlibconcat.cpp:22: /usr/include/c++/11/bits/stl_vector.h: In function ‘void testConcat(const string&, const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplecompressblock-testsimplecompressblock.o `test -f 'test/testsimplecompressblock.cpp' || echo './'`test/testsimplecompressblock.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testvalidatebamindex.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolDecodeBamParsePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: test/testsimplethreadpoolbamdecode.cpp:920:15: required from here test/testsimplethreadpoolbamdecode.cpp:977:82: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 977 | while ( (pc-pa >= 4) && ((pc-pa) >= (4+(lblocksize=decodeLittleEndianInteger<4>(pa)) )) ) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolDecodeBamParsePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: test/testsimplethreadpoolbamdecode.cpp:920:15: required from here test/testsimplethreadpoolbamdecode.cpp:977:82: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: test/testsimplethreadpoolbamdecode.cpp:2727:15: required from here test/testsimplethreadpoolbamdecode.cpp:2786:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2786 | (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp:2794:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2794 | (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp: In instantiation of ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: test/testsimplethreadpoolbamdecode.cpp:2727:15: required from here test/testsimplethreadpoolbamdecode.cpp:2786:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2786 | (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testsimplethreadpoolbamdecode.cpp:2794:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2794 | (pe-pc) >= (4+(parserState.blocklen=decodeLEInteger4(pc))) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from test/testgaparraybyte.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘_Z16testGapArrayBytev._omp_fn.0’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/GetFileSize.hpp:24, from ./libmaus2/aio/SynchronousGenericInput.hpp:23, from ./libmaus2/suffixsort/GapArrayByteDecoder.hpp:24, from ./libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp:22, from ./libmaus2/suffixsort/GapArrayByte.hpp:22, from test/testgaparraybyte.cpp:24: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from test/testgaparraybyte.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘bool libmaus2::sorting::MergingReadBack<_data_type, _order_type>::getNext(libmaus2::sorting::MergingReadBack<_data_type, _order_type>::data_type&) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/SimpleCompressedInputBlockConcat.hpp:22, from test/testsimplecompressblock.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::lz::SimpleCompressedStreamNamedInterval}; _Tp = libmaus2::lz::SimpleCompressedStreamNamedInterval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testvalidatebamindex.cpp:21: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘void testConcatInputBlock()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testvalidatebamindex.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamIndexBin.hpp:22, from ./libmaus2/bambam/BamIndexRef.hpp:22, from ./libmaus2/bambam/BamIndex.hpp:22, from test/testvalidatebamindex.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfaindex-testfaindex.o `test -f 'test/testfaindex.cpp' || echo './'`test/testfaindex.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/fastx/FastAIndex.hpp:22, from test/testfaindex.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastablockrecode-testfastablockrecode.o `test -f 'test/testfastablockrecode.cpp' || echo './'`test/testfastablockrecode.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = BamThreadPoolMergeWritePendingInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testrlhist-testrlhist.o `test -f 'test/testrlhist.cpp' || echo './'`test/testrlhist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testnumcpus-testnumcpus.o `test -f 'test/testnumcpus.cpp' || echo './'`test/testnumcpus.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdiag-testdiag.o `test -f 'test/testdiag.cpp' || echo './'`test/testdiag.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlowmembamheaderparser-testlowmembamheaderparser.o `test -f 'test/testlowmembamheaderparser.cpp' || echo './'`test/testlowmembamheaderparser.cpp In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamSeqEncodeTable.hpp:22, from ./libmaus2/fastx/FastABPGenerator.hpp:22, from test/testfastablockrecode.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamSeqEncodeTable.hpp:22, from ./libmaus2/fastx/FastABPGenerator.hpp:22, from test/testfastablockrecode.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In function ‘static uint64_t libmaus2::fastx::FastABPGenerator::fastAToFastaBP(std::istream&, std::ostream&, std::ostream*, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from test/testfastablockrecode.cpp:20: ./libmaus2/fastx/FastABPGenerator.hpp:321:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 321 | } | ^ ./libmaus2/fastx/FastABPGenerator.hpp:321:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/bambam/BamSeqEncodeTable.hpp:22, from ./libmaus2/fastx/FastABPGenerator.hpp:22, from test/testfastablockrecode.cpp:20: /usr/include/c++/11/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgeneflatfile-testgeneflatfile.o `test -f 'test/testgeneflatfile.cpp' || echo './'`test/testgeneflatfile.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testurlinputstream-testurlinputstream.o `test -f 'test/testurlinputstream.cpp' || echo './'`test/testurlinputstream.cpp In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimpletrie-testsimpletrie.o `test -f 'test/testsimpletrie.cpp' || echo './'`test/testsimpletrie.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlru-testlru.o `test -f 'test/testlru.cpp' || echo './'`test/testlru.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘BamThreadPoolMergeParserState& BamThreadPoolMergeParserState::operator=(BamThreadPoolMergeParserState&&)’, inlined from ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = BamThreadPoolMergeParserState]’ at ./libmaus2/autoarray/AutoArray.hpp:1132:14, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = BamThreadPoolMergeParserState; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:901:23, inlined from ‘BamThreadPoolMergeContextBase<_order_type>::BamThreadPoolMergeContextBase(libmaus2::parallel::SimpleThreadPool&, const MergeInfo&, libmaus2::lz::DecompressorObjectFactory&, uint64_t, uint64_t, uint64_t, uint64_t, int, std::ostream&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’ at test/testsimplethreadpoolbamdecode.cpp:2486:3: test/testsimplethreadpoolbamdecode.cpp:2275:8: warning: ‘.BamThreadPoolMergeParserState::blockred’ may be used uninitialized [-Wmaybe-uninitialized] 2275 | struct BamThreadPoolMergeParserState | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘BamThreadPoolMergeContextBase<_order_type>::BamThreadPoolMergeContextBase(libmaus2::parallel::SimpleThreadPool&, const MergeInfo&, libmaus2::lz::DecompressorObjectFactory&, uint64_t, uint64_t, uint64_t, uint64_t, int, std::ostream&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: ./libmaus2/autoarray/AutoArray.hpp:1132:44: note: ‘’ declared here 1132 | array[i] = N(); | ^~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In member function ‘BamThreadPoolMergeParserState& BamThreadPoolMergeParserState::operator=(BamThreadPoolMergeParserState&&)’, inlined from ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = BamThreadPoolMergeParserState]’ at ./libmaus2/autoarray/AutoArray.hpp:1132:14, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = BamThreadPoolMergeParserState; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:901:23, inlined from ‘BamThreadPoolMergeContextBase<_order_type>::BamThreadPoolMergeContextBase(libmaus2::parallel::SimpleThreadPool&, const MergeInfo&, libmaus2::lz::DecompressorObjectFactory&, uint64_t, uint64_t, uint64_t, uint64_t, int, std::ostream&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’ at test/testsimplethreadpoolbamdecode.cpp:2486:3: test/testsimplethreadpoolbamdecode.cpp:2275:8: warning: ‘.BamThreadPoolMergeParserState::blockred’ may be used uninitialized [-Wmaybe-uninitialized] 2275 | struct BamThreadPoolMergeParserState | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘BamThreadPoolMergeContextBase<_order_type>::BamThreadPoolMergeContextBase(libmaus2::parallel::SimpleThreadPool&, const MergeInfo&, libmaus2::lz::DecompressorObjectFactory&, uint64_t, uint64_t, uint64_t, uint64_t, int, std::ostream&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: ./libmaus2/autoarray/AutoArray.hpp:1132:44: note: ‘’ declared here 1132 | array[i] = N(); | ^~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbytecnt-testbytecnt.o `test -f 'test/testbytecnt.cpp' || echo './'`test/testbytecnt.cpp In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamThreadPoolDecodeBamParseQueueInfo&}; _Tp = BamThreadPoolDecodeBamParseQueueInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamThreadPoolMergeProcessBufferInfo&}; _Tp = BamThreadPoolMergeProcessBufferInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o `test -f 'test/teststronglyconnectedcomponents.cpp' || echo './'`test/teststronglyconnectedcomponents.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(std::priority_queue<_Tp, _Sequence, _Compare>::value_type&&) [with _Tp = std::pair; _Sequence = std::vector >; _Compare = BamThreadPoolMergeHeapComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(std::priority_queue<_Tp, _Sequence, _Compare>::value_type&&) [with _Tp = std::pair; _Sequence = std::vector >; _Compare = BamThreadPoolMergeHeapComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testlowmembamheaderparser.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp:71:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 71 | unique_ptr_type u(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void BamThreadPoolDecodeDecompressPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/bambam/BamHeaderLowMem.hpp:804:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 804 | } | ^ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void BamThreadPoolDecodeBamParsePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/graph/StronglyConnectedComponents.hpp:22, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/unordered_map:46, from /usr/include/c++/11/functional:61, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/include/c++/11/bits/hashtable.h: In member function ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::const_iterator) [with _Key = long long unsigned int; _Value = std::pair; _Alloc = std::allocator >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’: /usr/include/c++/11/bits/hashtable.h:2125:5: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Insert_base, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’} changed in GCC 7.1 2125 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2126 | _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/hashtable.h: In member function ‘void libmaus2::lru::SparseLRUFileBunch::remove(uint64_t)’: /usr/include/c++/11/bits/hashtable.h:917:21: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Insert_base, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’} changed in GCC 7.1 917 | { return erase(const_iterator(__it)); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_map.h: In function ‘void testStronglyConnectedComponents()’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘int64_t libmaus2::lru::SparseLRU::get(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/unordered_map:46, from /usr/include/c++/11/functional:61, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/include/c++/11/bits/hashtable.h:917:21: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Insert_base, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’} changed in GCC 7.1 917 | { return erase(const_iterator(__it)); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/unordered_map:46, from /usr/include/c++/11/functional:61, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/include/c++/11/bits/hashtable.h:917:21: note: parameter passing for argument of type ‘std::_Hashtable, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’ {aka ‘std::__detail::_Insert_base, std::allocator >, std::__detail::_Select1st, std::equal_to, std::hash, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits >::const_iterator’} changed in GCC 7.1 917 | { return erase(const_iterator(__it)); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/graph/StronglyConnectedComponents.hpp:22, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/graph/StronglyConnectedComponents.hpp:23, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/graph/StronglyConnectedComponents.hpp:22, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/graph/StronglyConnectedComponents.hpp:26, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/graph/StronglyConnectedComponents.hpp:22, from test/teststronglyconnectedcomponents.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void BamThreadPoolDecodeDecompressPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ test/teststronglyconnectedcomponents.cpp:110:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 110 | } | ^ test/teststronglyconnectedcomponents.cpp:110:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/teststronglyconnectedcomponents.cpp:110:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/teststronglyconnectedcomponents.cpp:110:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 test/teststronglyconnectedcomponents.cpp:110:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void BamThreadPoolDecodeBamParsePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testtopologicalsorting-testtopologicalsorting.o `test -f 'test/testtopologicalsorting.cpp' || echo './'`test/testtopologicalsorting.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlinebuffer-testlinebuffer.o `test -f 'test/testlinebuffer.cpp' || echo './'`test/testlinebuffer.cpp /usr/include/c++/11/bits/stl_vector.h: In member function ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/set:60, from ./libmaus2/graph/ReachableVertices.hpp:22, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/graph/ReachableVertices.hpp:24, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/graph/ReachableVertices.hpp:23, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/include/c++/11/bits/stl_map.h: In function ‘static std::pair > libmaus2::graph::TopologicalSorting::topologicalSorting(const std::map >&, uint64_t, projector_type) [with edge_type = long long unsigned int; projector_type = libmaus2::graph::IdentityTargetProjector]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/graph/ReachableVertices.hpp:24, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/graph/ReachableVertices.hpp:23, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/graph/ReachableVertices.hpp:24, from ./libmaus2/graph/TopologicalSorting.hpp:22, from test/testtopologicalsorting.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void testTopologicalSortingAcyclic()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void testTopologicalSortingCyclic()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void BamThreadPoolMergeProcessPackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsamdecoder-testsamdecoder.o `test -f 'test/testsamdecoder.cpp' || echo './'`test/testsamdecoder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdecimalnumberparser-testdecimalnumberparser.o `test -f 'test/testdecimalnumberparser.cpp' || echo './'`test/testdecimalnumberparser.cpp In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp:26, from ./libmaus2/aio/PosixFdInputOutputStream.hpp:22, from ./libmaus2/aio/PosixFdInputOutputStreamFactory.hpp:23, from ./libmaus2/aio/InputOutputStreamFactoryContainer.hpp:23, from ./libmaus2/lru/SparseLRUFileBunch.hpp:22, from test/testlru.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘libmaus2::aio::InputOutputStream& libmaus2::lru::SparseLRUFileBunch::operator[](uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::sorting::ParallelStableSort::MergeLevel<_iterator, _order_type>::dispatch() [with _iterator = long long unsigned int*; _order_type = libmaus2::bambam::BamAlignmentNameComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::sorting::ParallelStableSort::MergeLevel<_iterator, _order_type>::dispatch() [with _iterator = long long unsigned int*; _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/DecimalNumberParser.hpp:22, from test/testdecimalnumberparser.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testunsignedinteger-testunsignedinteger.o `test -f 'test/testunsignedinteger.cpp' || echo './'`test/testunsignedinteger.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::math::DecimalNumberParser::DecimalNumberParser()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void BamThreadPoolMergeMergePackageDispatcher<_order_type>::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&) [with _order_type = libmaus2::bambam::BamAlignmentPosComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/math/DecimalNumberParser.hpp:22, from test/testdecimalnumberparser.cpp:21: /usr/include/c++/11/bits/stl_vector.h: In function ‘int main()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testmd5-testmd5.o `test -f 'test/testmd5.cpp' || echo './'`test/testmd5.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsha-testsha.o `test -f 'test/testsha.cpp' || echo './'`test/testsha.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testparallelbamvalidation-testparallelbamvalidation.o `test -f 'test/testparallelbamvalidation.cpp' || echo './'`test/testparallelbamvalidation.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testparallelbamrewrite-testparallelbamrewrite.o `test -f 'test/testparallelbamrewrite.cpp' || echo './'`test/testparallelbamrewrite.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbammateerase-testbammateerase.o `test -f 'test/testbammateerase.cpp' || echo './'`test/testbammateerase.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::lz::BgzfDeflateParallel::drain()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::lz::BgzfDeflateParallel::flushInternal()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamWriterTemplate<_base_type>::writeBamBlock(const uint8_t*, uint64_t) [with _base_type = libmaus2::bambam::BamWriterParallelStreamBase]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from test/testsamdecoder.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::lz::BgzfDeflateParallelThreadCallable::run()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::BamWriterTemplate<_base_type>::BamWriterTemplate(libmaus2::bambam::BamWriterTemplate<_base_type>::base_type&, const libmaus2::bambam::BamHeader&, const std::vector*) [with _base_type = libmaus2::bambam::BamWriterParallelStreamBase]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from test/testsamdecoder.cpp:21: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testsamdecoder.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeaderLowMem.hpp:26, from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:40: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::DecompressedPendingObject&}; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::bambam::parallel::ValidationControl::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::ValidationControl::putDecompressedBlockAddPending(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::ValidationControl::_ZThn16_N8libmaus26bambam8parallel17ValidationControl30putDecompressedBlockAddPendingESt10shared_ptrINS1_17DecompressedBlockEE(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::bambam::parallel::ValidationControl::putParsedBlockAddPending(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testparallelbamblocksort-testparallelbamblocksort.o `test -f 'test/testparallelbamblocksort.cpp' || echo './'`test/testparallelbamblocksort.cpp In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/BgzfInflateHeaderBase.hpp:25, from ./libmaus2/bambam/parallel/InputBlock.hpp:22, from ./libmaus2/bambam/parallel/ControlInputInfo.hpp:22, from test/testparallelbamvalidation.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeaderLowMem.hpp:26, from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:40: ./libmaus2/hashing/ConstantStringHash.hpp:71:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 71 | unique_ptr_type u(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject}; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::bamHeaderComplete(const libmaus2::bambam::BamHeaderParserState&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:40: ./libmaus2/bambam/BamHeaderLowMem.hpp:804:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 804 | } | ^ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::DecompressedPendingObject&}; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::WritePendingObject}; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testmapperm-testmapperm.o `test -f 'test/testmapperm.cpp' || echo './'`test/testmapperm.cpp In file included from test/testparallelbamblocksort.cpp:19: ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue()’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1197:88: warning: left shift count >= width of type [-Wshift-count-overflow] 1197 | package->subid = ((block->blockid + 1) << 32) | block->subblockid; | ~~~~~~~~~~~~~~~~~~~~~^~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1202:89: warning: left shift count >= width of type [-Wshift-count-overflow] 1202 | cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; | ~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::putDecompressedBlockAddPending(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::putParsedBlockAddPending(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::addWritePendingBgzfBlock(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::_ZThn72_N8libmaus26bambam8parallel14RewriteControl24addWritePendingBgzfBlockExxSt10shared_ptrINS_2lz27BgzfDeflateOutputBufferBaseEERKNS4_31BgzfDeflateZStreamBaseFlushInfoE(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testexternalmemoryindex-testexternalmemoryindex.o `test -f 'test/testexternalmemoryindex.cpp' || echo './'`test/testexternalmemoryindex.cpp In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::RewriteControl::checkLargeBlockCompressionPending()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::RewriteControl::checkValidatedRewritePending()’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual void libmaus2::bambam::parallel::RewriteControl::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp:71:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 71 | unique_ptr_type u(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamrewrite.cpp:54: ./libmaus2/bambam/BamHeaderLowMem.hpp:804:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 804 | } | ^ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testmapperm.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In instantiation of ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1268:6: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(libmaus2::ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; libmaus2::ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1324:32: required from ‘static void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(void*, libmaus2::ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; libmaus2::ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:348:49: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::enqueHeader() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:582:6: required from ‘libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::BlockMergeControl(libmaus2::parallel::SimpleThreadPool&, std::ostream&, libmaus2::autoarray::AutoArray&, const std::vector&, libmaus2::bitio::BitVector*, int, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const string&, const string&, libmaus2::digest::DigestInterface*, libmaus2::bambam::parallel::BlockMergeControlTypeBase::block_merge_output_format_t, bool, bool, bool, uint64_t, const string&) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; std::ostream = std::basic_ostream; libmaus2::bitio::BitVector = libmaus2::bitio::BitVectorTemplate; uint64_t = long long unsigned int; std::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:217:68: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:257:38: required from here ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1197:88: warning: left shift count >= width of type [-Wshift-count-overflow] 1197 | package->subid = ((block->blockid + 1) << 32) | block->subblockid; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1202:89: warning: left shift count >= width of type [-Wshift-count-overflow] 1202 | cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp: In instantiation of ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::samCheckWritePendingQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1268:6: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(libmaus2::ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; libmaus2::ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1324:32: required from ‘static void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::sam_data_write_function(void*, libmaus2::ssize_t, size_t, const char*, size_t, cram_data_write_block_type) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; libmaus2::ssize_t = int; size_t = unsigned int; cram_data_write_block_type = _cram_data_write_block_type]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:348:49: required from ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::enqueHeader() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:582:6: required from ‘libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::BlockMergeControl(libmaus2::parallel::SimpleThreadPool&, std::ostream&, libmaus2::autoarray::AutoArray&, const std::vector&, libmaus2::bitio::BitVector*, int, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const string&, const string&, libmaus2::digest::DigestInterface*, libmaus2::bambam::parallel::BlockMergeControlTypeBase::block_merge_output_format_t, bool, bool, bool, uint64_t, const string&) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; std::ostream = std::basic_ostream; libmaus2::bitio::BitVector = libmaus2::bitio::BitVectorTemplate; uint64_t = long long unsigned int; std::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:217:68: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate; bool create_dup_mark_info = true; std::string = std::__cxx11::basic_string]’ test/testparallelbamblocksort.cpp:267:37: required from here ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1197:88: warning: left shift count >= width of type [-Wshift-count-overflow] 1197 | package->subid = ((block->blockid + 1) << 32) | block->subblockid; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./libmaus2/bambam/parallel/BlockMergeControl.hpp:1202:89: warning: left shift count >= width of type [-Wshift-count-overflow] 1202 | cpackage->subid = ((block->blockid + 1) << 32) | block->subblockid; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:23, from test/testexternalmemoryindex.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:23, from test/testexternalmemoryindex.cpp:20: /usr/include/c++/11/bits/stl_vector.h: In member function ‘uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:23, from test/testexternalmemoryindex.cpp:20: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastqtobam-testfastqtobam.o `test -f 'test/testfastqtobam.cpp' || echo './'`test/testfastqtobam.cpp /usr/include/c++/11/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testmapperm.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2; _comparator = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testmapperm.cpp:101:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 101 | } | ^ In file included from test/testexternalmemoryindex.cpp:20: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:178:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 178 | } | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:178:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsamrecoding-testsamrecoding.o `test -f 'test/testsamrecoding.cpp' || echo './'`test/testsamrecoding.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdazzlerdb-testdazzlerdb.o `test -f 'test/testdazzlerdb.cpp' || echo './'`test/testdazzlerdb.cpp In file included from test/testdazzlerdb.cpp:28: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 912 | if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/dazzler/db/InputBase.hpp:21, from ./libmaus2/dazzler/db/IndexBase.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:22, from ./libmaus2/dazzler/db/PartTrackContainer.hpp:21, from ./libmaus2/dazzler/align/TandemVectorPartContainer.hpp:21, from test/testdazzlerdb.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::db::FastaInfo}; _Tp = libmaus2::dazzler::db::FastaInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::GenericInputControlCompressionPending&}; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::FastqToBamControlSubReadPending&}; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::FastqToBamControlSubReadPending}; _Tp = libmaus2::bambam::parallel::FastqToBamControlSubReadPending; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::FastqToBamControl::checkWritePendingQueue()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::FastqToBamControl::checkCompressionPendingQueue()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::FastqToBamControl::checkSubReadPendingQueue()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::FastqToBamControl::checkReadPendingQueue()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from test/testfastqtobam.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::FastqToBamControl::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::dazzler::db::DatabaseFile::DatabaseFile(const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/dazzler/db/InputBase.hpp:21, from ./libmaus2/dazzler/db/IndexBase.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:22, from ./libmaus2/dazzler/db/PartTrackContainer.hpp:21, from ./libmaus2/dazzler/align/TandemVectorPartContainer.hpp:21, from test/testdazzlerdb.cpp:18: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastashred-testfastashred.o `test -f 'test/testfastashred.cpp' || echo './'`test/testfastashred.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testalignerspeed-testalignerspeed.o `test -f 'test/testalignerspeed.cpp' || echo './'`test/testalignerspeed.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastasingleline-testfastasingleline.o `test -f 'test/testfastasingleline.cpp' || echo './'`test/testfastasingleline.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::Chromosome&}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘std::pair<_FIter, _FIter> std::__equal_range(_ForwardIterator, _ForwardIterator, const _Tp&, _CompareItTp, _CompareTpIt) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = libmaus2::bambam::Chromosome; _CompareItTp = __gnu_cxx::__ops::_Iter_comp_val; _CompareTpIt = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2116 | __equal_range(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:2116:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::BamAlignmentDecoderInfo}; _Tp = libmaus2::bambam::BamAlignmentDecoderInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from ./libmaus2/lcs/NPLinMem.hpp:22, from ./libmaus2/lcs/NNPCor.hpp:24, from test/testalignerspeed.cpp:18: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 912 | if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::parallel::GenericInputControlSubBlockPending; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::math::IntegerInterval&}; _Tp = libmaus2::math::IntegerInterval; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o `test -f 'test/testdazzleralignmentrewrite.cpp' || echo './'`test/testdazzleralignmentrewrite.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::FragmentAlignmentBuffer::FragmentAlignmentBufferCopyRequest&}; _Tp = libmaus2::bambam::parallel::FragmentAlignmentBuffer::FragmentAlignmentBufferCopyRequest; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from test/testsamrecoding.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector libmaus2::bambam::parallel::FragmentAlignmentBuffer::setupCopy(libmaus2::bambam::parallel::FragmentAlignmentBuffer&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadEnds&}; _Tp = libmaus2::bambam::ReadEnds; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ChromosomeVectorMerge::ChromosomeVectorMerge(const std::vector*>&, bool)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h:2222:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2222 | return std::__equal_range(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2223 | __gnu_cxx::__ops::__iter_comp_val(__comp), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2224 | __gnu_cxx::__ops::__val_comp_iter(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamCatHeader.hpp:26, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:23, from test/testsamrecoding.cpp:20: ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 279 | } | ^ ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/bambam/ChromosomeVectorMerge.hpp:279:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testxz-testxz.o `test -f 'test/testxz.cpp' || echo './'`test/testxz.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2478:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2478 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdazzlerindex-testdazzlerindex.o `test -f 'test/testdazzlerindex.cpp' || echo './'`test/testdazzlerindex.cpp /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::bambam::BamIndex::reg2chunks(uint64_t, uint64_t, uint64_t) const’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testargparser-testargparser.o `test -f 'test/testargparser.cpp' || echo './'`test/testargparser.cpp In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from test/testsamrecoding.cpp:20: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_map.h: In constructor ‘libmaus2::bambam::ProgramHeaderLinesMerge::ProgramHeaderLinesMerge(const std::vector*>&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘bool libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::readAlignmentInternal(bool) [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamMergeTemplate<_heap_comparator_type, _sort_check_type>::init() [with _heap_comparator_type = libmaus2::bambam::BamMergeCoordinateHeapComparator; _sort_check_type = libmaus2::bambam::BamCatHeader::IsCoordinateSorted]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1904 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1905 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1904:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::bambam::ReadGroupVectorMerge::ReadGroupVectorMerge(const std::vector*>&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdnarank-testdnarank.o `test -f 'test/testdnarank.cpp' || echo './'`test/testdnarank.cpp ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from test/testsamrecoding.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testsamrecoding.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/util/ArgInfo.hpp:23, from test/testdazzlerindex.cpp:18: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateThreadPoolReader]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/util/ArgInfo.hpp:23, from test/testdazzlerindex.cpp:18: /usr/include/c++/11/bits/stl_map.h: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlowbits-testlowbits.o `test -f 'test/testlowbits.cpp' || echo './'`test/testlowbits.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘std::pair libmaus2::bambam::ReadEndsBlockIndexSet::merge(std::vector >, bool (*)(const libmaus2::bambam::ReadEndsBase&, const libmaus2::bambam::ReadEndsBase&), uint64_t (*)(const std::vector&, libmaus2::bambam::DupSetCallback&), libmaus2::bambam::DupSetCallback&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastaexplode-testfastaexplode.o `test -f 'test/testfastaexplode.cpp' || echo './'`test/testfastaexplode.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘std::pair libmaus2::bambam::ReadEndsBlockIndexSet::mergePairs(std::vector >, bool (*)(const libmaus2::bambam::ReadEndsBase&, const libmaus2::bambam::ReadEndsBase&), uint64_t (*)(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int), libmaus2::bambam::DupSetCallback&, unsigned int)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/cassert:44, from ./libmaus2/util/IntervalTree.hpp:27, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:29, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from test/testdnarank.cpp:29: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: test/testdnarank.cpp:76:169: required from ‘void testLong(const string&, uint64_t) [with rank_type = libmaus2::rank::DNARankTemplate<64>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ test/testdnarank.cpp:213:37: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 812 | assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::bambam::ProgramHeaderLineSet::ProgramHeaderLineSet(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::RefIdInterval}; _Tp = libmaus2::bambam::parallel::RefIdInterval; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void libmaus2::bambam::parallel::GenericInputControlReorderWorkPackageDispatcher::dispatch(libmaus2::parallel::SimpleThreadWorkPackage*, libmaus2::parallel::SimpleThreadPoolInterfaceEnqueTermInterface&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlStreamInfo}; _Tp = libmaus2::bambam::parallel::GenericInputControlStreamInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfaextract-testfaextract.o `test -f 'test/testfaextract.cpp' || echo './'`test/testfaextract.cpp In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = std::__cxx11::basic_istringstream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::rank::DNARankMEM; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp:71:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 71 | unique_ptr_type u(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp:23, from ./libmaus2/bambam/parallel/GenericInputSingleData.hpp:30, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp:22, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp:22, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:36, from test/testparallelbamblocksort.cpp:19: ./libmaus2/bambam/BamHeaderLowMem.hpp:804:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 804 | } | ^ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::ReadEndsContainer::flush()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testmurmur3-testmurmur3.o `test -f 'test/testmurmur3.cpp' || echo './'`test/testmurmur3.cpp In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::addTempFile() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::addTempFile() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::getBlockInfo() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘std::vector libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::getBlockInfo() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::BamIndexGenerator::addBlock(const uint8_t*, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testpairalign-testpairalign.o `test -f 'test/testpairalign.cpp' || echo './'`test/testpairalign.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/fastx/FastAIndex.hpp:22, from test/testfaextract.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::FastAIndexEntry}; _Tp = libmaus2::fastx::FastAIndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::fastx::FastAIndex::FastAIndex(std::istream&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsplaytree-testsplaytree.o `test -f 'test/testsplaytree.cpp' || echo './'`test/testsplaytree.cpp In file included from test/testpairalign.cpp:20: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 912 | if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testpairalign.cpp:121:12: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testpairalign.cpp:121:12: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::rank::DNARankMEM&}; _Tp = libmaus2::rank::DNARankMEM; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In function ‘bool addElement(libmaus2::util::SplayTree&, std::set&, const value_type&) [with value_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::rank::DNARankTemplate::testFromRunLength(const std::vector >&, uint64_t) const [with unsigned int cachelinesize = 128]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘bool eraseElement(libmaus2::util::SplayTree&, std::set&, const value_type&) [with value_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/include/c++/11/bits/vector.tcc: In function ‘void test2()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/ContainerElementFreeList.hpp:21, from ./libmaus2/util/SplayTree.hpp:23, from test/testsplaytree.cpp:18: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::rank::DNARankTemplate::testFromRunLength(const std::vector >&, uint64_t) const [with unsigned int cachelinesize = 64]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::rank::DNARankTemplate::testFromRunLength(const std::vector >&, uint64_t) const [with unsigned int cachelinesize = 256]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbwtconstruction-testbwtconstruction.o `test -f 'test/testbwtconstruction.cpp' || echo './'`test/testbwtconstruction.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/fastx/CharBuffer.hpp:22, from ./libmaus2/aio/SynchronousFastReaderBase.hpp:24, from ./libmaus2/fastx/FastAReader.hpp:24, from test/testpairalign.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = libmaus2::bambam::ReadEnds; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1646:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1646 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static uint64_t libmaus2::bambam::DupMarkBase::markDuplicatePairs(std::vector&, libmaus2::bambam::DupSetCallback&, unsigned int)’: /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/fastx/CharBuffer.hpp:22, from ./libmaus2/aio/SynchronousFastReaderBase.hpp:24, from ./libmaus2/fastx/FastAReader.hpp:24, from test/testpairalign.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In function ‘uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/fastx/CharBuffer.hpp:22, from ./libmaus2/aio/SynchronousFastReaderBase.hpp:24, from ./libmaus2/fastx/FastAReader.hpp:24, from test/testpairalign.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::rank::DNARankMEM}; _Tp = libmaus2::rank::DNARankMEM; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {libmaus2::rank::DNARankMEM}; _Tp = libmaus2::rank::DNARankMEM; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::rank::DNARankTemplate::mem(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 64]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::rank::DNARankTemplate::mem(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 256]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::rank::DNARankTemplate::mem(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; unsigned int cachelinesize = 128]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘_ZNK8libmaus24rank15DNARankTemplateILj64EE10testSearchEjy._omp_fn.0’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbwtconstructionfasta-testbwtconstructionfasta.o `test -f 'test/testbwtconstructionfasta.cpp' || echo './'`test/testbwtconstructionfasta.cpp /usr/include/c++/11/bits/stl_algo.h: In function ‘_ZNK8libmaus24rank15DNARankTemplateILj128EE10testSearchEjy._omp_fn.0’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::DNARankMEMContComp>]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘_ZNK8libmaus24rank15DNARankTemplateILj256EE10testSearchEjy._omp_fn.0’: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/rank/DNARankSMEMContext.hpp:22, from ./libmaus2/rank/DNARank.hpp:21, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::huffman::RLEncoderBaseTemplate<_bit_writer_type>::implicitFlush() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::GenericInputControlCompressionPending&}; _Tp = libmaus2::bambam::parallel::GenericInputControlCompressionPending; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2478:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2478 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::parallel::DecompressedPendingObject&}; _Tp = libmaus2::bambam::parallel::DecompressedPendingObject; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject}; _Tp = libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::bamHeaderComplete(const libmaus2::bambam::BamHeaderParserState&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::bamHeaderComplete(const libmaus2::bambam::BamHeaderParserState&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = bool; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::WritePendingObject}; _Tp = libmaus2::bambam::parallel::WritePendingObject; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::parallel::GenericInputControlSubBlockPending}; _Tp = libmaus2::bambam::parallel::GenericInputControlSubBlockPending; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testarrayinput-testarrayinput.o `test -f 'test/testarrayinput.cpp' || echo './'`test/testarrayinput.cpp In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::shared_ptr; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkInputBlockPending(uint64_t) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkInputBlockPending(uint64_t) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewritePendingQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewritePendingQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::BlockMergeControl::_ZThn60_N8libmaus26bambam8parallel17BlockMergeControlINS1_43GenericInputControlMergeHeapEntryCoordinateEE43genericInputControlBlockCompressionFinishedENS1_37GenericInputControlCompressionPendingE(libmaus2::bambam::parallel::GenericInputControlCompressionPending)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::genericInputControlBlockCompressionFinished(libmaus2::bambam::parallel::GenericInputControlCompressionPending) [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::BlockMergeControl::_ZThn60_N8libmaus26bambam8parallel17BlockMergeControlINS1_42GenericInputControlMergeHeapEntryQueryNameEE43genericInputControlBlockCompressionFinishedENS1_37GenericInputControlCompressionPendingE(libmaus2::bambam::parallel::GenericInputControlCompressionPending)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::samParseDecompressedBlockFinished(uint64_t, libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::putDecompressedBlockAddPending(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::genericInputBgzfDecompressionWorkPackageDecompressedBlockReturn(uint64_t, libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::BlockSortControl::_ZThn24_N8libmaus26bambam8parallel16BlockSortControlINS1_36FragmentAlignmentBufferPosComparatorELb1EE30putDecompressedBlockAddPendingESt10shared_ptrINS1_17DecompressedBlockEE(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::BlockSortControl::_ZThn160_N8libmaus26bambam8parallel16BlockSortControlINS1_36FragmentAlignmentBufferPosComparatorELb1EE33samParseDecompressedBlockFinishedEySt10shared_ptrINS1_17DecompressedBlockEE(uint64_t, libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::samParseDecompressedBlockFinished(uint64_t, libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::putDecompressedBlockAddPending(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::genericInputBgzfDecompressionWorkPackageDecompressedBlockReturn(uint64_t, libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::BlockSortControl::_ZThn24_N8libmaus26bambam8parallel16BlockSortControlINS1_42FragmentAlignmentBufferQueryNameComparatorELb0EE30putDecompressedBlockAddPendingESt10shared_ptrINS1_17DecompressedBlockEE(libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::bambam::parallel::BlockSortControl::_ZThn160_N8libmaus26bambam8parallel16BlockSortControlINS1_42FragmentAlignmentBufferQueryNameComparatorELb0EE33samParseDecompressedBlockFinishedEySt10shared_ptrINS1_17DecompressedBlockEE(uint64_t, libmaus2::bambam::parallel::DecompressedBlock::shared_ptr_type)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkInputBlockPending(uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsymcnt-testsymcnt.o `test -f 'test/testsymcnt.cpp' || echo './'`test/testsymcnt.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkInputBlockPending(uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkPostSortPendingQueue() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::smallLinearBlockCompressionPendingObjectFinished(const libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkPostSortPendingQueue() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::smallLinearBlockCompressionPendingObjectFinished(const libmaus2::bambam::parallel::SmallLinearBlockCompressionPendingObject&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkLargeBlockCompressionPending() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::checkLargeBlockCompressionPending() [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::bgzfOutputBlockWritten(uint64_t, int64_t, uint64_t, uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::addWritePendingBgzfBlock(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::bgzfOutputBlockWritten(uint64_t, int64_t, uint64_t, uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::addWritePendingBgzfBlock(int64_t, int64_t, libmaus2::lz::BgzfDeflateOutputBufferBase::shared_ptr_type, const libmaus2::lz::BgzfDeflateZStreamBaseFlushInfo&) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferReorderWorkPackageFinished(libmaus2::bambam::parallel::FragmentAlignmentBufferReorderWorkPackage*) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::validateBlockFragmentFinished(libmaus2::bambam::parallel::ValidationFragment&, bool) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferReorderWorkPackageFinished(libmaus2::bambam::parallel::FragmentAlignmentBufferReorderWorkPackage*) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferRewriteFragmentComplete(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type&, libmaus2::bambam::parallel::FragmentAlignmentBuffer::shared_ptr_type&, uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator; bool _create_dup_mark_info = true]’: /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In member function ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::fragmentAlignmentBufferRewriteFragmentComplete(libmaus2::bambam::parallel::AlignmentBuffer::shared_ptr_type&, libmaus2::bambam::parallel::FragmentAlignmentBuffer::shared_ptr_type&, uint64_t) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false]’: /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkCompressionPending() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkCompressionPending() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testbwtconstructionfasta.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgammapd-testgammapd.o `test -f 'test/testgammapd.cpp' || echo './'`test/testgammapd.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::DNAIndexMetaDataSequence}; _Tp = libmaus2::fastx::DNAIndexMetaDataSequence; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryCoordinate]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::bambam::parallel::BlockMergeControl<_heap_element_type>::checkRewriteReorderQueue() [with _heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/Buffer.hpp:22, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::sorting::ParallelStableSort::MergeLevel<_iterator, _order_type>::dispatch() [with _iterator = unsigned char**; _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferPosComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::sorting::ParallelStableSort::MergeLevel<_iterator, _order_type>::dispatch() [with _iterator = unsigned char**; _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testbwtconstructionfasta.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In function ‘static int libmaus2::fastx::FastAToCompact4BigBandBiDir::fastaToCompact4BigBandBiDir(const std::vector >&, std::ostream*, bool, std::string)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testbwtconstructionfasta.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/gamma/GammaPDIndexDecoderBase.hpp:22, from ./libmaus2/gamma/GammaPDIndexDecoder.hpp:21, from ./libmaus2/gamma/GammaPDDecoder.hpp:21, from test/testgammapd.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/gamma/GammaPDIndexDecoderBase.hpp:22, from ./libmaus2/gamma/GammaPDIndexDecoder.hpp:21, from ./libmaus2/gamma/GammaPDDecoder.hpp:21, from test/testgammapd.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::gamma::GammaPDIndexDecoder::GammaPDIndexDecoder(const std::vector >&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/gamma/GammaPDIndexDecoderBase.hpp:22, from ./libmaus2/gamma/GammaPDIndexDecoder.hpp:21, from ./libmaus2/gamma/GammaPDDecoder.hpp:21, from test/testgammapd.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testbwtconstructionfasta.cpp:24: ./libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp:577:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 577 | } | ^ /usr/include/c++/11/bits/vector.tcc: In function ‘int main()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdnasuffixtrav-testdnasuffixtrav.o `test -f 'test/testdnasuffixtrav.cpp' || echo './'`test/testdnasuffixtrav.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testserialisedsorting-testserialisedsorting.o `test -f 'test/testserialisedsorting.cpp' || echo './'`test/testserialisedsorting.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/SymCountEncoder.hpp:23, from test/testsymcnt.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::huffman::SymBitEncoderBaseTemplate<_bit_writer_type>::flush() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void testsymbit()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::huffman::SymCountEncoderBaseTemplate<_bit_writer_type>::implicitFlush() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘void testsymcnt()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamnumericalindex-testbamnumericalindex.o `test -f 'test/testbamnumericalindex.cpp' || echo './'`test/testbamnumericalindex.cpp In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Obj; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Obj&}; _Tp = Obj; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor}; _Tp = libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor; _Alloc = std::allocator >::BlockDescriptor>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::SerialisingMergingReadBack(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t) [with _data_type = Obj; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = char**; order_type = libmaus2::aio::SerialisingBuffer >::Comparator; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘std::pair libmaus2::aio::SerialisingBuffer<_data_type, _order_type>::flush() [with _data_type = Obj; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In destructor ‘std::unique_ptr<_Tp, _Dp>::~unique_ptr() [with _Tp = libmaus2::sorting::SerialisingSortingBufferedOutputFile; _Dp = std::default_delete >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static std::vector::BlockDescriptor> libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::premerge(const string&, std::vector::BlockDescriptor>, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t, uint64_t, int, std::ostream*) [with _data_type = Obj; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In function ‘void checkSortingSerialised()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/BufferedOutput.hpp:23, from ./libmaus2/sorting/MergingReadBack.hpp:23, from ./libmaus2/sorting/SortingBufferedOutputFile.hpp:22, from test/testserialisedsorting.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testnpl-testnpl.o `test -f 'test/testnpl.cpp' || echo './'`test/testnpl.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testkcnt-testkcnt.o `test -f 'test/testkcnt.cpp' || echo './'`test/testkcnt.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testdnasuffixtrav.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::fastx::DNAIndexMetaDataSequence}; _Tp = libmaus2::fastx::DNAIndexMetaDataSequence; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from test/testnpl.cpp:19: ./libmaus2/lcs/NPL.hpp: In instantiation of ‘libmaus2::lcs::NPL::index_type libmaus2::lcs::NPL::np(iter_a, iter_a, iter_b, iter_b, libmaus2::lcs::NPL::index_type) [with iter_a = const unsigned char*; iter_b = const unsigned char*; libmaus2::lcs::NPL::index_type = long long int]’: ./libmaus2/lcs/NPL.hpp:90:7: required from here ./libmaus2/lcs/NPL.hpp:514:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 514 | if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from ./libmaus2/lcs/NPLinMem.hpp:22, from test/testnpl.cpp:18: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 912 | if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testnpl.cpp:48:9: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = __gnu_cxx::__normal_iterator >; iter_b = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testnpl.cpp:48:9: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testdnasuffixtrav.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In function ‘static int libmaus2::fastx::FastAToCompact4BigBandBiDir::fastaToCompact4BigBandBiDir(const std::vector >&, std::ostream*, bool, std::string)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testdnasuffixtrav.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testdnasuffixtrav.cpp:24: ./libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp:577:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 577 | } | ^ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/aio/ArrayInputStreamBuffer.hpp:24, from ./libmaus2/aio/ArrayInputStream.hpp:22, from test/testdnasuffixtrav.cpp:18: In static member function ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement]’, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:901:23, inlined from ‘libmaus2::util::SimpleQueue<_value_type>::SimpleQueue() [with _value_type = libmaus2::rank::DNARankSuffixTreeNodeEnumeratorQueueElement]’ at ./libmaus2/util/SimpleQueue.hpp:105:6, inlined from ‘libmaus2::rank::DNARankSuffixTreeNodeEnumerator::DNARankSuffixTreeNodeEnumerator(libmaus2::rank::DNARank&)’ at ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:41:84, inlined from ‘void transform(const string&)’ at test/testdnasuffixtrav.cpp:58:62: ./libmaus2/autoarray/AutoArray.hpp:1132:33: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1132 | array[i] = N(); | ^~~~~ ./libmaus2/autoarray/AutoArray.hpp: In function ‘void transform(const string&)’: ./libmaus2/autoarray/AutoArray.hpp:1132:44: note: ‘’ declared here 1132 | array[i] = N(); | ^~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::lz::BgzfThreadQueueElement&}; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::lz::BgzfThreadQueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In constructor ‘libmaus2::lz::BgzfInflateParallel::BgzfInflateParallel(std::istream&, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testintervaltree-testintervaltree.o `test -f 'test/testintervaltree.cpp' || echo './'`test/testintervaltree.cpp /usr/include/c++/11/bits/stl_vector.h: In member function ‘libmaus2::lz::BgzfInflateInfo libmaus2::lz::BgzfInflateParallel::readAndInfo(char*, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘virtual void libmaus2::lz::BgzfInflateParallelThreadCallable::run()’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/bambam/BamAuxSortingBuffer.hpp:23, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:23, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamgetrefreg-testbamgetrefreg.o `test -f 'test/testbamgetrefreg.cpp' || echo './'`test/testbamgetrefreg.cpp In file included from /usr/include/c++/11/vector:72, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/LineBufferFastAReader.hpp:22, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/LineBufferFastAReader.hpp:22, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/bambam/DecoderBase.hpp:23, from ./libmaus2/bambam/CigarRunLengthDecoder.hpp:21, from ./libmaus2/bambam/CigarDecoder.hpp:21, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:22, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/LineBufferFastAReader.hpp:22, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor}; _Tp = libmaus2::aio::SerialisingSortingBufferedOutput >::BlockDescriptor; _Alloc = std::allocator >::BlockDescriptor>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/LineBufferFastAReader.hpp:22, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ./libmaus2/fastx/acgtnMap.hpp:26, from ./libmaus2/fastx/LineBufferFastAReader.hpp:22, from ./libmaus2/fastx/KmerCount.hpp:23, from test/testkcnt.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::SerialisingMergingReadBack(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t) [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = char**; order_type = libmaus2::aio::SerialisingBuffer >::Comparator; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/teststringgraph-teststringgraph.o `test -f 'test/teststringgraph.cpp' || echo './'`test/teststringgraph.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘std::pair libmaus2::aio::SerialisingBuffer<_data_type, _order_type>::flush() [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In destructor ‘libmaus2::sorting::SerialisingSortingBufferedOutputFile::~SerialisingSortingBufferedOutputFile()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In destructor ‘std::unique_ptr<_Tp, _Dp>::~unique_ptr() [with _Tp = libmaus2::sorting::SerialisingSortingBufferedOutputFile; _Dp = std::default_delete >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static std::vector::BlockDescriptor> libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector::BlockDescriptor>&, libmaus2::sorting::SerialisingMergingReadBack<_data_type, _order_type>::order_type&, uint64_t, uint64_t) [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘libmaus2::sorting::SerialisingSortingBufferedOutputFile<_data_type, _order_type>::merger_ptr_type libmaus2::sorting::SerialisingSortingBufferedOutputFile<_data_type, _order_type>::getMerger(uint64_t, uint64_t, int, std::ostream*) [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::SerialisingSortingBufferedOutputFile<_data_type, _order_type>::reduce(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, int, std::ostream*) [with _data_type = libmaus2::fastx::KmerCount::KmerObject; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator >::Comparator, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::BlockDescriptor*, std::vector >::BlockDescriptor, std::allocator >::BlockDescriptor> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlognormal-testlognormal.o `test -f 'test/testlognormal.cpp' || echo './'`test/testlognormal.cpp In file included from test/testlognormal.cpp:19: ./libmaus2/random/LogNormalRandom.hpp: In static member function ‘static std::pair libmaus2::random::LogNormalRandom::estimateParameters(const std::vector&)’: ./libmaus2/random/LogNormalRandom.hpp:132:25: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 132 | { | ^ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamgetrefreg.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamgetrefreg.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/random/LogNormalRandom.hpp:25, from test/testlognormal.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘int main()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamgetrefreg.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testConstantSumCombinatorics-testConstantSumCombinatorics.o `test -f 'test/testConstantSumCombinatorics.cpp' || echo './'`test/testConstantSumCombinatorics.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/dazzler/stringgraph/OverlapNode.hpp:21, from ./libmaus2/dazzler/stringgraph/Edge.hpp:21, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:21, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::stringgraph::OverlapNode}; _Tp = libmaus2::dazzler::stringgraph::OverlapNode; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::db::FastaInfo}; _Tp = libmaus2::dazzler::db::FastaInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::stringgraph::Edge}; _Tp = libmaus2::dazzler::stringgraph::Edge; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testmatrix-testmatrix.o `test -f 'test/testmatrix.cpp' || echo './'`test/testmatrix.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::bambam::Chromosome}; _Tp = libmaus2::bambam::Chromosome; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamgetrefreg.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/bits/char_traits.h:39, from /usr/include/c++/11/ios:40, from /usr/include/c++/11/ostream:38, from ./libmaus2/util/NumberSerialisation.hpp:23, from ./libmaus2/dazzler/stringgraph/OverlapNode.hpp:21, from ./libmaus2/dazzler/stringgraph/Edge.hpp:21, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:21, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/stl_algobase.h: In function ‘void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator*, std::vector > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator*, std::vector > >]’: /usr/include/c++/11/bits/stl_algobase.h:152:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 152 | iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) | ^~~~~~~~~ /usr/include/c++/11/bits/stl_algobase.h:152:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algobase.h:152:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:85:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 85 | std::iter_swap(__result, __b); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:87:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 87 | std::iter_swap(__result, __c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:89:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 89 | std::iter_swap(__result, __a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/dazzler/stringgraph/OverlapNode.hpp:21, from ./libmaus2/dazzler/stringgraph/Edge.hpp:21, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:21, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::dazzler::stringgraph::StringGraph::StringGraph(std::istream&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:22, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamgetrefreg.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testconvpowercache-testconvpowercache.o `test -f 'test/testconvpowercache.cpp' || echo './'`test/testconvpowercache.cpp /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamgetrefreg.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/util/StringSerialisation.hpp:30, from ./libmaus2/util/ArgInfo.hpp:31, from test/testbamgetrefreg.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlassort-testlassort.o `test -f 'test/testlassort.cpp' || echo './'`test/testlassort.cpp In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamgetrefreg.cpp:20: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:30, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamgetrefreg.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/util/ArgInfo.hpp:24, from test/testbamgetrefreg.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::bambam::BamHeader::init(stream_type&) [with stream_type = libmaus2::lz::BgzfInflateStream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test/testconvpowercache.cpp:19: ./libmaus2/math/Convolution.hpp: In static member function ‘static void libmaus2::math::Convolution::fft(iterator, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’: ./libmaus2/math/Convolution.hpp:90:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 90 | static void fft(iterator A, uint64_t const n, bool const reverse = false) | ^~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/dazzler/stringgraph/OverlapNode.hpp:21, from ./libmaus2/dazzler/stringgraph/Edge.hpp:21, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:21, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::dazzler::db::DatabaseFile::DatabaseFile(const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/NumberSerialisation.hpp:28, from ./libmaus2/dazzler/stringgraph/OverlapNode.hpp:21, from ./libmaus2/dazzler/stringgraph/Edge.hpp:21, from ./libmaus2/dazzler/stringgraph/StringGraph.hpp:21, from test/teststringgraph.cpp:18: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testnnplocalaligner-testnnplocalaligner.o `test -f 'test/testnnplocalaligner.cpp' || echo './'`test/testnnplocalaligner.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testBamRawDecoder-testBamRawDecoder.o `test -f 'test/testBamRawDecoder.cpp' || echo './'`test/testBamRawDecoder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testpanic-testpanic.o `test -f 'test/testpanic.cpp' || echo './'`test/testpanic.cpp In file included from ./libmaus2/lcs/NPLinMem.hpp:22, from ./libmaus2/lcs/NNPCor.hpp:24, from ./libmaus2/lcs/NNPCorLocalAligner.hpp:21, from test/testnnplocalaligner.cpp:22: ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = true; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:118:43: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] 912 | if ( AlignmentTraceContainer::capacity() <= std::min(an,bn)+ed ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NP.hpp: In instantiation of ‘int64_t libmaus2::lcs::NP::npTemplate(iter_a, iter_a, iter_b, iter_b) [with iter_a = const unsigned char*; iter_b = const unsigned char*; bool self_check = false; int64_t = long long int]’: ./libmaus2/lcs/NP.hpp:120:44: required from ‘int64_t libmaus2::lcs::NP::np(iter_a, iter_a, iter_b, iter_b, bool) [with iter_a = const unsigned char*; iter_b = const unsigned char*; int64_t = long long int]’ ./libmaus2/lcs/NP.hpp:106:7: required from here ./libmaus2/lcs/NP.hpp:912:74: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare] In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testlassort.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from test/testnnplocalaligner.cpp:22: ./libmaus2/lcs/NNPCorLocalAligner.hpp: In instantiation of ‘static libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmer* libmaus2::lcs::NNPCorLocalAligner::extractKmers(iterator, iterator, libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmer*, unsigned int, uint64_t, int64_t, int64_t) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long long unsigned int; int64_t = long long int]’: ./libmaus2/lcs/NNPCorLocalAligner.hpp:304:49: required from ‘static void libmaus2::lcs::NNPCorLocalAligner::extractKmers(iterator, iterator, int64_t, int64_t, iterator, iterator, int64_t, int64_t, unsigned int, uint64_t, libmaus2::autoarray::AutoArray&, uint64_t, libmaus2::autoarray::AutoArray&, uint64_t, libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmerMatches*&) [with iterator = __gnu_cxx::__normal_iterator >; int64_t = long long int; uint64_t = long long unsigned int]’ ./libmaus2/lcs/NNPCorLocalAligner.hpp:865:17: required from ‘std::vector > > libmaus2::lcs::NNPCorLocalAligner::align(iterator, iterator, iterator, iterator, int64_t, int64_t, int64_t, int64_t) [with iterator = __gnu_cxx::__normal_iterator >; int64_t = long long int]’ test/testnnplocalaligner.cpp:119:45: required from here ./libmaus2/lcs/NNPCorLocalAligner.hpp:227:44: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator >::difference_type’ {aka ‘int’} and ‘const unsigned int’ [-Wsign-compare] 227 | if ( ae-aa >= anak ) | ~~~~~~^~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testlassort.cpp:18: /usr/include/c++/11/bits/stl_vector.h: In function ‘uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testlassort.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testavlset-testavlset.o `test -f 'test/testavlset.cpp' || echo './'`test/testavlset.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::align::LasSort2<>::BlockInfo}; _Tp = libmaus2::dazzler::align::LasSort2<>::BlockInfo; _Alloc = std::allocator::BlockInfo>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::BlockInfo, std::allocator::BlockInfo> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from test/testavlset.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from test/testavlset.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/set:61, from test/testavlset.cpp:23: /usr/include/c++/11/bits/stl_set.h: In constructor ‘std::set<_Key, _Compare, _Alloc>::set(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Compare = std::less; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_set.h:191:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 191 | set(_InputIterator __first, _InputIterator __last) | ^~~ /usr/include/c++/11/bits/stl_set.h:191:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:72, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from test/testavlset.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::avl::AVLSet::AVLSetNode}; _Tp = libmaus2::avl::AVLSet::AVLSetNode; _Alloc = std::allocator::AVLSetNode>]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::AVLSetNode>::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘bool libmaus2::avl::AVLSet<_value_type, _index_type, _order_type, container_type_template, freelist_type_template>::insert(const value_type&) [with _value_type = long long unsigned int; _index_type = unsigned int; _order_type = std::less; container_type_template = std::vector; freelist_type_template = std::vector]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::AVLSetNode*, std::vector::AVLSetNode> >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::AVLSetNode*, std::vector::AVLSetNode> >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::AVLSetNode*, std::vector::AVLSetNode> >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/util/ArgParser.hpp:24, from test/testBamRawDecoder.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/util/ArgParser.hpp:24, from test/testBamRawDecoder.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘int main()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::AVLSetNode*, std::vector::AVLSetNode> >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from test/testavlset.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ test/testavlset.cpp:50:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 50 | std::set ST(VT.begin(),VT.end()); | ^ In file included from /usr/include/c++/11/vector:67, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from test/testavlset.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from test/testavlset.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /usr/include/c++/11/functional:62, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from test/testavlset.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testBamRawDecoder.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::bambam::ReadGroup&}; _Tp = libmaus2::bambam::ReadGroup; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlibcurl-testlibcurl.o `test -f 'test/testlibcurl.cpp' || echo './'`test/testlibcurl.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamRawDecoder.hpp:21, from test/testBamRawDecoder.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In constructor ‘libmaus2::hashing::ConstantStringHash::ConstantStringHash(iterator, iterator, uint64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 96 | ConstantStringHash(iterator ita, iterator ite, uint64_t const maxn = 64*1024) | ^~~~~~~~~~~~~~~~~~ ./libmaus2/hashing/ConstantStringHash.hpp:96:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testBamRawDecoder.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::bambam::BamHeader::getReadGroups(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static int libmaus2::dazzler::align::LasSort2::lassort2(const string&, const std::vector >&, uint64_t, uint64_t, const string&, bool, std::ostream*) [with comparator_type = libmaus2::dazzler::align::OverlapDataInterfaceFullComparator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::BlockInfo*, std::vector::BlockInfo, std::allocator::BlockInfo> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::BlockInfo*, std::vector::BlockInfo, std::allocator::BlockInfo> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testBamRawDecoder.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testBamRawDecoder.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘typename libmaus2::trie::LinearHashTrie<_char_type, id_type>::unique_ptr_type libmaus2::trie::Trie<_char_type>::toLinearHashTrie() const [with id_type = unsigned int; _char_type = char]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testBamRawDecoder.cpp:19: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/util/ArgParser.hpp:24, from test/testBamRawDecoder.cpp:19: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./libmaus2/bambam/BamHeader.hpp:31, from ./libmaus2/bambam/BamRawDecoder.hpp:21, from test/testBamRawDecoder.cpp:20: ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 768 | } | ^ ./libmaus2/trie/TrieState.hpp:768:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testRunLengthBitVector-testRunLengthBitVector.o `test -f 'test/testRunLengthBitVector.cpp' || echo './'`test/testRunLengthBitVector.cpp In file included from ./libmaus2/bambam/BamHeader.hpp:36, from ./libmaus2/bambam/BamRawDecoder.hpp:21, from test/testBamRawDecoder.cpp:20: ./libmaus2/hashing/ConstantStringHash.hpp: In member function ‘void libmaus2::bambam::BamHeader::initSetup()’: ./libmaus2/hashing/ConstantStringHash.hpp:86:59: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | shared_ptr_type s(new this_type(ita,ite,maxn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testnnplocalaligner.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testnnplocalaligner.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘uint64_t libmaus2::index::ExternalMemoryIndexGenerator<_data_type, _base_level_log, _inner_level_log>::flush() [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testCopy-testCopy.o `test -f 'test/testCopy.cpp' || echo './'`test/testCopy.cpp In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testnnplocalaligner.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::dazzler::db::FastaInfo}; _Tp = libmaus2::dazzler::db::FastaInfo; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair >&}; _Tp = std::pair >; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector > >::iterator’ changed in GCC 7.1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c -o libmaus2/bambam/scram_mod_la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/bambam/Scram.c -fPIC -DPIC -o libmaus2/bambam/.libs/scram_mod_la-Scram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/bambam/Scram.c -o libmaus2/bambam/scram_mod_la-Scram.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPool-testThreadPool.o `test -f 'test/testThreadPool.cpp' || echo './'`test/testThreadPool.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/la-StaticInitialization.lo `test -f 'libmaus2/StaticInitialization.cpp' || echo './'`libmaus2/StaticInitialization.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -fPIC -DPIC -o libmaus2/.libs/la-StaticInitialization.o In file included from ./libmaus2/dazzler/db/TrackAnno.hpp:22, from ./libmaus2/dazzler/db/Track.hpp:21, from ./libmaus2/dazzler/db/DatabaseFile.hpp:23, from test/testnnplocalaligner.cpp:20: In static member function ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmerMatches]’, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmerMatches; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:901:23, inlined from ‘libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAligner(unsigned int, unsigned int, uint64_t, int64_t, int64_t, uint64_t, double, double, int64_t, bool, bool)’ at ./libmaus2/lcs/NNPCorLocalAligner.hpp:202:5: ./libmaus2/autoarray/AutoArray.hpp:1132:33: warning: ‘*(unsigned char (*)[28])((char*)& + offsetof(libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmerMatches, libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAlignerKmerMatches::apos))’ may be used uninitialized [-Wmaybe-uninitialized] 1132 | array[i] = N(); | ^~~~~ ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::lcs::NNPCorLocalAligner::NNPCorLocalAligner(unsigned int, unsigned int, uint64_t, int64_t, int64_t, uint64_t, double, double, int64_t, bool, bool)’: ./libmaus2/autoarray/AutoArray.hpp:1132:44: note: ‘’ declared here 1132 | array[i] = N(); | ^~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bitio/la-CompactArray.lo `test -f 'libmaus2/bitio/CompactArray.cpp' || echo './'`libmaus2/bitio/CompactArray.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -fPIC -DPIC -o libmaus2/bitio/.libs/la-CompactArray.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -o libmaus2/bitio/la-CompactArray.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-RankTable.lo `test -f 'libmaus2/rank/RankTable.cpp' || echo './'`libmaus2/rank/RankTable.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-RankTable.o In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testnnplocalaligner.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > > libmaus2::lcs::NNPCorLocalAligner::align(iterator, iterator, iterator, iterator, int64_t, int64_t, int64_t, int64_t) [with iterator = __gnu_cxx::__normal_iterator >]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -o libmaus2/rank/la-RankTable.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-log2table.lo `test -f 'libmaus2/rank/log2table.cpp' || echo './'`libmaus2/rank/log2table.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/log2table.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-log2table.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-isFastQ.lo `test -f 'libmaus2/fastx/isFastQ.cpp' || echo './'`libmaus2/fastx/isFastQ.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-isFastQ.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/log2table.cpp -o libmaus2/rank/la-log2table.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -o libmaus2/fastx/la-isFastQ.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/wavelet/la-toWaveletTreeBits.lo `test -f 'libmaus2/wavelet/toWaveletTreeBits.cpp' || echo './'`libmaus2/wavelet/toWaveletTreeBits.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -fPIC -DPIC -o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/la-divsufsort.lo `test -f 'libmaus2/suffixsort/divsufsort.cpp' || echo './'`libmaus2/suffixsort/divsufsort.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-divsufsort.o In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testnnplocalaligner.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::dazzler::db::DatabaseFile::DatabaseFile(const string&)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/util/ArgInfoParseBase.hpp:23, from ./libmaus2/util/ArgParser.hpp:21, from test/testnnplocalaligner.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -o libmaus2/suffixsort/la-divsufsort.o >/dev/null 2>&1 In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from libmaus2/StaticInitialization.cpp:81: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/wavelet/toWaveletTreeBits.hpp:23, from libmaus2/wavelet/toWaveletTreeBits.cpp:21: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::wavelet::CopyBackPacket&}; _Tp = libmaus2::wavelet::CopyBackPacket; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::wavelet::CopyBackPacket}; _Tp = libmaus2::wavelet::CopyBackPacket; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-md5.lo `test -f 'libmaus2/digest/md5.cpp' || echo './'`libmaus2/digest/md5.cpp /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::math::DecimalNumberParser::DecimalNumberParser()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5.cpp -o libmaus2/digest/la-md5.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/math/la-primes16.lo `test -f 'libmaus2/math/primes16.cpp' || echo './'`libmaus2/math/primes16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/primes16.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-primes16.o /usr/include/c++/11/bits/vector.tcc: In function ‘libmaus2::autoarray::AutoArray libmaus2::wavelet::toWaveletTreeBitsParallel(libmaus2::bitio::CompactArray*, bool, uint64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/wavelet/toWaveletTreeBits.hpp:23, from libmaus2/wavelet/toWaveletTreeBits.cpp:21: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/wavelet/toWaveletTreeBits.hpp:23, from libmaus2/wavelet/toWaveletTreeBits.cpp:21: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:31, from ./libmaus2/wavelet/toWaveletTreeBits.hpp:23, from libmaus2/wavelet/toWaveletTreeBits.cpp:21: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/primes16.cpp -o libmaus2/math/la-primes16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-OutputFileNameTools.lo `test -f 'libmaus2/util/OutputFileNameTools.cpp' || echo './'`libmaus2/util/OutputFileNameTools.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-OutputFileNameTools.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -o libmaus2/util/la-OutputFileNameTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/select/la-ESelectBase.lo `test -f 'libmaus2/select/ESelectBase.cpp' || echo './'`libmaus2/select/ESelectBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -fPIC -DPIC -o libmaus2/select/.libs/la-ESelectBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -o libmaus2/wavelet/la-toWaveletTreeBits.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-CigarStringParser.lo `test -f 'libmaus2/bambam/CigarStringParser.cpp' || echo './'`libmaus2/bambam/CigarStringParser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-CigarStringParser.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -o libmaus2/select/la-ESelectBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-SnappyCompress.lo `test -f 'libmaus2/lz/SnappyCompress.cpp' || echo './'`libmaus2/lz/SnappyCompress.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-SnappyCompress.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -o libmaus2/la-StaticInitialization.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -o libmaus2/bambam/la-CigarStringParser.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -o libmaus2/lz/la-SnappyCompress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEndsContainer.lo `test -f 'libmaus2/bambam/ReadEndsContainer.cpp' || echo './'`libmaus2/bambam/ReadEndsContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEndsContainer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEnds.lo `test -f 'libmaus2/bambam/ReadEnds.cpp' || echo './'`libmaus2/bambam/ReadEnds.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/huffman/la-IndexLoaderBase.lo `test -f 'libmaus2/huffman/IndexLoaderBase.cpp' || echo './'`libmaus2/huffman/IndexLoaderBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEnds.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-IndexLoaderBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -o libmaus2/huffman/la-IndexLoaderBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/huffman/la-KvInitResult.lo `test -f 'libmaus2/huffman/KvInitResult.cpp' || echo './'`libmaus2/huffman/KvInitResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-KvInitResult.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat 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-fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamInstance.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -o libmaus2/dazzler/align/la-Overlap.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamFactoryContainer.lo `test -f 'libmaus2/aio/OutputStreamFactoryContainer.cpp' || echo './'`libmaus2/aio/OutputStreamFactoryContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/la-OutputStreamFactoryContainer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -o libmaus2/aio/la-InputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -o libmaus2/aio/la-OutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o In file included from /usr/include/c++/11/cassert:44, from ./libmaus2/suffixsort/divsufsort.hpp:32, from ./libmaus2/util/Utf8String.hpp:27, from ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:37, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1404:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5210:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 812 | assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1413:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5210:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/timing/la-RealTimeClock.lo `test -f 'libmaus2/timing/RealTimeClock.cpp' || echo './'`libmaus2/timing/RealTimeClock.cpp ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1422:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5210:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1431:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5210:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1404:105: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5217:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1413:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5217:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -fPIC -DPIC -o libmaus2/timing/.libs/la-RealTimeClock.o ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1422:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5217:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtSmallAlphabet(const string&, const libmaus2::huffman::HuffmanTree&, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1431:106: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const string&, const string&, std::string, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5217:66: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:812:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -o libmaus2/timing/la-RealTimeClock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/gtf/la-CDS.lo `test -f 'libmaus2/gtf/CDS.cpp' || echo './'`libmaus2/gtf/CDS.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-CDS.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/gtf/la-Exon.lo `test -f 'libmaus2/gtf/Exon.cpp' || echo './'`libmaus2/gtf/Exon.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/Exon.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-Exon.o ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1662:111: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1287:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1353:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1520:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2320:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5070:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 234 | assert ( symtonodesp-symtonodes.begin() == symtonodevecoffsets[sym] ); ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1668:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1287:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1353:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1520:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2320:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5070:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1674:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1287:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1353:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1520:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2320:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5070:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1680:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1287:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1353:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1520:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2320:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5070:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned char; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1662:111: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1287:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1353:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1520:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2320:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5070:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = short unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1668:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1287:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1353:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1520:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2320:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5070:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1674:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1287:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1353:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1520:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2320:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5070:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] ./libmaus2/wavelet/RlToHwtBase.hpp: In instantiation of ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTermSmallAlphabet(const std::vector >&, const string&, uint64_t, uint64_t, uint64_t) [with entity_type = long long unsigned int; bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1680:112: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = false; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int]’ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:125:68: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1287:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1353:105: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1520:28: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:2320:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long long unsigned int; std::ostream = std::basic_ostream]’ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5070:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here ./libmaus2/wavelet/RlToHwtBase.hpp:234:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -o libmaus2/gtf/la-CDS.o >/dev/null 2>&1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = QueueElement; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/gtf/la-ExonInfo.lo `test -f 'libmaus2/gtf/ExonInfo.cpp' || echo './'`libmaus2/gtf/ExonInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/Exon.cpp -o libmaus2/gtf/la-Exon.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/ExonInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInfo.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/ExonInfo.cpp -o libmaus2/gtf/la-ExonInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/gtf/la-ExonInterval.lo `test -f 'libmaus2/gtf/ExonInterval.cpp' || echo './'`libmaus2/gtf/ExonInterval.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/ExonInterval.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInterval.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/gtf/la-ExonSubInfo.lo `test -f 'libmaus2/gtf/ExonSubInfo.cpp' || echo './'`libmaus2/gtf/ExonSubInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonSubInfo.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -o libmaus2/gtf/la-ExonSubInfo.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/ExonInterval.cpp -o libmaus2/gtf/la-ExonInterval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/protein/la-Blosum62.lo `test -f 'libmaus2/protein/Blosum62.cpp' || echo './'`libmaus2/protein/Blosum62.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/protein/Blosum62.cpp -fPIC -DPIC -o libmaus2/protein/.libs/la-Blosum62.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/protein/Blosum62.cpp -o libmaus2/protein/la-Blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/protein/la-CodonMapper.lo `test -f 'libmaus2/protein/CodonMapper.cpp' || echo './'`libmaus2/protein/CodonMapper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/protein/CodonMapper.cpp -fPIC -DPIC -o libmaus2/protein/.libs/la-CodonMapper.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/vcf/la-VCFSortEntry.lo `test -f 'libmaus2/vcf/VCFSortEntry.cpp' || echo './'`libmaus2/vcf/VCFSortEntry.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/vcf/VCFSortEntry.cpp -fPIC -DPIC -o libmaus2/vcf/.libs/la-VCFSortEntry.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/protein/CodonMapper.cpp -o libmaus2/protein/la-CodonMapper.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/vcf/VCFSortEntry.cpp -o libmaus2/vcf/la-VCFSortEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlInitObject.lo `test -f 'libmaus2/network/CurlInitObject.cpp' || echo './'`libmaus2/network/CurlInitObject.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlInitObject.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInitObject.o In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {QueueElement}; _Tp = QueueElement; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlInitObject.cpp -o libmaus2/network/la-CurlInitObject.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlOutputBlock.lo `test -f 'libmaus2/network/CurlOutputBlock.cpp' || echo './'`libmaus2/network/CurlOutputBlock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlOutputBlock.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlOutputBlock.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlResponseAcceptor.lo `test -f 'libmaus2/network/CurlResponseAcceptor.cpp' || echo './'`libmaus2/network/CurlResponseAcceptor.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlResponseAcceptor.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlResponseAcceptor.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlResponseAcceptor.cpp -o libmaus2/network/la-CurlResponseAcceptor.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlOutputBlock.cpp -o libmaus2/network/la-CurlOutputBlock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-HttpCurlResponseAcceptor.lo `test -f 'libmaus2/network/HttpCurlResponseAcceptor.cpp' || echo './'`libmaus2/network/HttpCurlResponseAcceptor.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/HttpCurlResponseAcceptor.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/HttpCurlResponseAcceptor.cpp -o libmaus2/network/la-HttpCurlResponseAcceptor.o >/dev/null 2>&1 /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = std::less >; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-FtpCurlResponseAcceptor.lo `test -f 'libmaus2/network/FtpCurlResponseAcceptor.cpp' || echo './'`libmaus2/network/FtpCurlResponseAcceptor.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/FtpCurlResponseAcceptor.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::SemiExternalKeyTupleSort::sort(std::vector >, const string&, std::ostream&, uint64_t, uint64_t, uint64_t, uint64_t, bool) [with data_type = std::pair; key_projector_type = PairFirstProjectorType; output_data_type = long long unsigned int; output_projector_type = PairSecondProjectorType]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, std::less >, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/FtpCurlResponseAcceptor.cpp -o libmaus2/network/la-FtpCurlResponseAcceptor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlObject.lo `test -f 'libmaus2/network/CurlObject.cpp' || echo './'`libmaus2/network/CurlObject.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlObject.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlObject.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlObjectReader.lo `test -f 'libmaus2/network/CurlObjectReader.cpp' || echo './'`libmaus2/network/CurlObjectReader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlObjectReader.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlObjectReader.o /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtComputeSSA::computeSSA(std::string, uint64_t, uint64_t, std::string, bool, uint64_t, uint64_t, uint64_t, std::ostream*, std::string, std::string)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlObjectReader.cpp -o libmaus2/network/la-CurlObjectReader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlObject.cpp -o libmaus2/network/la-CurlObject.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlObjectThreadCallable.lo `test -f 'libmaus2/network/CurlObjectThreadCallable.cpp' || echo './'`libmaus2/network/CurlObjectThreadCallable.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlObjectThreadCallable.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlObjectThreadCallable.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlInputStreamBuffer.lo `test -f 'libmaus2/network/CurlInputStreamBuffer.cpp' || echo './'`libmaus2/network/CurlInputStreamBuffer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlInputStreamBuffer.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlObjectThreadCallable.cpp -o libmaus2/network/la-CurlObjectThreadCallable.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlInputStreamBuffer.cpp -o libmaus2/network/la-CurlInputStreamBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlInputStream.lo `test -f 'libmaus2/network/CurlInputStream.cpp' || echo './'`libmaus2/network/CurlInputStream.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlInputStream.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInputStream.o In file included from ./libmaus2/lz/StreamWrapperBuffer.hpp:23, from ./libmaus2/lz/StreamWrapper.hpp:22, from ./libmaus2/aio/PosixFdInput.hpp:26, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: In static member function ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = IsaTriple]’, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = IsaTriple; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:901:23, inlined from ‘libmaus2::aio::SynchronousGenericOutput<_data_type>::SynchronousGenericOutput(std::ostream&, uint64_t) [with _data_type = IsaTriple]’ at ./libmaus2/aio/SynchronousGenericOutput.hpp:142:27, inlined from ‘static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’ at ./libmaus2/sorting/MergingReadBack.hpp:194:57: ./libmaus2/autoarray/AutoArray.hpp:1132:33: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1132 | array[i] = N(); | ^~~~~ ./libmaus2/autoarray/AutoArray.hpp: In static member function ‘static std::vector libmaus2::sorting::MergingReadBack<_data_type, _order_type>::mergeStep(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = IsaTriple; _order_type = std::less]’: ./libmaus2/autoarray/AutoArray.hpp:1132:44: note: ‘’ declared here 1132 | array[i] = N(); | ^~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/stacktrace/StackTrace.hpp:33, from ./libmaus2/exception/LibMausException.hpp:25, from ./libmaus2/parallel/StdMutex.hpp:23, from ./libmaus2/aio/StreamLock.hpp:21, from ./libmaus2/aio/PosixFdInput.hpp:23, from ./libmaus2/aio/PosixFdInputWrapper.hpp:22, from ./libmaus2/aio/PosixFdInputStream.hpp:22, from ./libmaus2/aio/PosixFdInputStreamFactory.hpp:23, from ./libmaus2/aio/InputStreamFactoryContainer.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:21, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘_ZN8libmaus210suffixsort6bwtb3m13BwtComputeSSA10computeSSAENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEyyS8_byyyPSoS8_S8_._omp_fn.0’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-GetHostName.lo `test -f 'libmaus2/network/GetHostName.cpp' || echo './'`libmaus2/network/GetHostName.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/GetHostName.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-GetHostName.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlInputStream.cpp -o libmaus2/network/la-CurlInputStream.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/GetHostName.cpp -o libmaus2/network/la-GetHostName.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/parallel/la-SimpleThreadWorkPackage.lo `test -f 'libmaus2/parallel/SimpleThreadWorkPackage.cpp' || echo './'`libmaus2/parallel/SimpleThreadWorkPackage.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/SimpleThreadWorkPackage.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/SimpleThreadWorkPackage.cpp -o libmaus2/parallel/la-SimpleThreadWorkPackage.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/parallel/la-StdSemaphore.lo `test -f 'libmaus2/parallel/StdSemaphore.cpp' || echo './'`libmaus2/parallel/StdSemaphore.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/StdSemaphore.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-StdSemaphore.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/parallel/la-StdMutex.lo `test -f 'libmaus2/parallel/StdMutex.cpp' || echo './'`libmaus2/parallel/StdMutex.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/StdMutex.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-StdMutex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/StdSemaphore.cpp -o libmaus2/parallel/la-StdSemaphore.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/StdMutex.cpp -o libmaus2/parallel/la-StdMutex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/parallel/la-StdSpinLock.lo `test -f 'libmaus2/parallel/StdSpinLock.cpp' || echo './'`libmaus2/parallel/StdSpinLock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/StdSpinLock.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-StdSpinLock.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/parallel/la-StaticInitialisation.lo `test -f 'libmaus2/parallel/StaticInitialisation.cpp' || echo './'`libmaus2/parallel/StaticInitialisation.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/StaticInitialisation.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/la-StaticInitialisation.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/StdSpinLock.cpp -o libmaus2/parallel/la-StdSpinLock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/parallel/StaticInitialisation.cpp -o libmaus2/parallel/la-StaticInitialisation.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/autoarray/la-AutoArray.lo `test -f 'libmaus2/autoarray/AutoArray.cpp' || echo './'`libmaus2/autoarray/AutoArray.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/autoarray/AutoArray.cpp -fPIC -DPIC -o libmaus2/autoarray/.libs/la-AutoArray.o In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/autoarray/AutoArray.cpp -o libmaus2/autoarray/la-AutoArray.o >/dev/null 2>&1 /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1949:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1949 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~ /usr/include/c++/11/bits/stl_algo.h:1949:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 134 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/stacktrace/la-StackTrace.lo `test -f 'libmaus2/stacktrace/StackTrace.cpp' || echo './'`libmaus2/stacktrace/StackTrace.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/stacktrace/StackTrace.cpp -fPIC -DPIC -o libmaus2/stacktrace/.libs/la-StackTrace.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/stacktrace/la-StackTraceBufferContainer.lo `test -f 'libmaus2/stacktrace/StackTraceBufferContainer.cpp' || echo './'`libmaus2/stacktrace/StackTraceBufferContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/stacktrace/StackTraceBufferContainer.cpp -fPIC -DPIC -o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/stacktrace/StackTrace.cpp -o libmaus2/stacktrace/la-StackTrace.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/posix/la-PosixExecute.lo `test -f 'libmaus2/posix/PosixExecute.cpp' || echo './'`libmaus2/posix/PosixExecute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/posix/PosixExecute.cpp -fPIC -DPIC -o libmaus2/posix/.libs/la-PosixExecute.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/stacktrace/StackTraceBufferContainer.cpp -o libmaus2/stacktrace/la-StackTraceBufferContainer.o >/dev/null 2>&1 /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/include/c++/11/bits/stl_heap.h:134:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/posix/PosixExecute.cpp -o libmaus2/posix/la-PosixExecute.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/posix/la-PosixFunctions.lo `test -f 'libmaus2/posix/PosixFunctions.cpp' || echo './'`libmaus2/posix/PosixFunctions.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/posix/PosixFunctions.cpp -fPIC -DPIC -o libmaus2/posix/.libs/la-PosixFunctions.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/demangle/la-Demangle.lo `test -f 'libmaus2/demangle/Demangle.cpp' || echo './'`libmaus2/demangle/Demangle.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/demangle/Demangle.cpp -fPIC -DPIC -o libmaus2/demangle/.libs/la-Demangle.o In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/demangle/Demangle.cpp -o libmaus2/demangle/la-Demangle.o >/dev/null 2>&1 /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::huffman::IndexEntry&}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/posix/PosixFunctions.cpp -o libmaus2/posix/la-PosixFunctions.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/arch/la-I386Features.lo `test -f 'libmaus2/arch/I386Features.cpp' || echo './'`libmaus2/arch/I386Features.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/arch/I386Features.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-I386Features.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/arch/I386Features.cpp -o libmaus2/arch/la-I386Features.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/arch/la-CacheLineSize.lo `test -f 'libmaus2/arch/CacheLineSize.cpp' || echo './'`libmaus2/arch/CacheLineSize.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-CacheLineSize.o /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/arch/la-PageSize.lo `test -f 'libmaus2/arch/PageSize.cpp' || echo './'`libmaus2/arch/PageSize.cpp /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::huffman::IndexEntry}; _Tp = libmaus2::huffman::IndexEntry; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/arch/PageSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-PageSize.o /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::suffixsort::BwtMergeZBlock}; _Tp = libmaus2::suffixsort::BwtMergeZBlock; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -o libmaus2/arch/la-CacheLineSize.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/arch/PageSize.cpp -o libmaus2/arch/la-PageSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/exception/la-LibMausException.lo `test -f 'libmaus2/exception/LibMausException.cpp' || echo './'`libmaus2/exception/LibMausException.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -fPIC -DPIC -o libmaus2/exception/.libs/la-LibMausException.o In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffman::createFinalStream(stream_type&) [with stream_type = libmaus2::aio::OutputStreamInstance]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -lz -module -shared -export-dynamic -avoid-version -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_scram_mod.la -rpath /usr/lib/arm-linux-gnueabihf/libmaus2/2.0.768 libmaus2/bambam/scram_mod_la-Scram.lo -lz -lz libtool: link: gcc -shared -fPIC -DPIC libmaus2/bambam/.libs/scram_mod_la-Scram.o -lz -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_scram_mod.so -o .libs/libmaus2_scram_mod.so libtool: link: ( cd ".libs" && rm -f "libmaus2_scram_mod.la" && ln -s "../libmaus2_scram_mod.la" "libmaus2_scram_mod.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_posix.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/posix/la-PosixExecute.lo libmaus2/posix/la-PosixFunctions.lo -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/posix/.libs/la-PosixExecute.o libmaus2/posix/.libs/la-PosixFunctions.o -L/lib -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_posix.so.2 -o .libs/libmaus2_posix.so.2.0.768 libtool: link: (cd ".libs" && rm -f "libmaus2_posix.so.2" && ln -s "libmaus2_posix.so.2.0.768" "libmaus2_posix.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_posix.so" && ln -s "libmaus2_posix.so.2.0.768" "libmaus2_posix.so") libtool: link: ar cr .libs/libmaus2_posix.a libmaus2/posix/la-PosixExecute.o libmaus2/posix/la-PosixFunctions.o libtool: link: ranlib .libs/libmaus2_posix.a libtool: link: ( cd ".libs" && rm -f "libmaus2_posix.la" && ln -s "../libmaus2_posix.la" "libmaus2_posix.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_demangle.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/demangle/la-Demangle.lo -lz libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -o libmaus2/exception/la-LibMausException.o >/dev/null 2>&1 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/demangle/.libs/la-Demangle.o -L/lib -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_demangle.so.2 -o .libs/libmaus2_demangle.so.2.0.768 libtool: link: (cd ".libs" && rm -f "libmaus2_demangle.so.2" && ln -s "libmaus2_demangle.so.2.0.768" "libmaus2_demangle.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_demangle.so" && ln -s "libmaus2_demangle.so.2.0.768" "libmaus2_demangle.so") libtool: link: ar cr .libs/libmaus2_demangle.a libmaus2/demangle/la-Demangle.o libtool: link: ranlib .libs/libmaus2_demangle.a libtool: link: ( cd ".libs" && rm -f "libmaus2_demangle.la" && ln -s "../libmaus2_demangle.la" "libmaus2_demangle.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_arch.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/arch/la-I386Features.lo libmaus2/arch/la-CacheLineSize.lo libmaus2/arch/la-PageSize.lo -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/arch/.libs/la-I386Features.o libmaus2/arch/.libs/la-CacheLineSize.o libmaus2/arch/.libs/la-PageSize.o -L/lib -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_arch.so.2 -o .libs/libmaus2_arch.so.2.0.768 libtool: link: (cd ".libs" && rm -f "libmaus2_arch.so.2" && ln -s "libmaus2_arch.so.2.0.768" "libmaus2_arch.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_arch.so" && ln -s "libmaus2_arch.so.2.0.768" "libmaus2_arch.so") libtool: link: ar cr .libs/libmaus2_arch.a libmaus2/arch/la-I386Features.o libmaus2/arch/la-CacheLineSize.o libmaus2/arch/la-PageSize.o libtool: link: ranlib .libs/libmaus2_arch.a libtool: link: ( cd ".libs" && rm -f "libmaus2_arch.la" && ln -s "../libmaus2_arch.la" "libmaus2_arch.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_stacktrace.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/stacktrace/la-StackTrace.lo libmaus2/stacktrace/la-StackTraceBufferContainer.lo libmaus2_posix.la libmaus2_demangle.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/stacktrace/.libs/la-StackTrace.o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o -Wl,-rpath -Wl,/<>/libmaus2-2.0.768+dfsg/src/.libs -L/lib ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_stacktrace.so.2 -o .libs/libmaus2_stacktrace.so.2.0.768 libtool: link: (cd ".libs" && rm -f "libmaus2_stacktrace.so.2" && ln -s "libmaus2_stacktrace.so.2.0.768" "libmaus2_stacktrace.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_stacktrace.so" && ln -s "libmaus2_stacktrace.so.2.0.768" "libmaus2_stacktrace.so") libtool: link: ar cr .libs/libmaus2_stacktrace.a libmaus2/stacktrace/la-StackTrace.o libmaus2/stacktrace/la-StackTraceBufferContainer.o libtool: link: ranlib .libs/libmaus2_stacktrace.a libtool: link: ( cd ".libs" && rm -f "libmaus2_stacktrace.la" && ln -s "../libmaus2_stacktrace.la" "libmaus2_stacktrace.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_autoarray.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/autoarray/la-AutoArray.lo libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/autoarray/.libs/la-AutoArray.o -Wl,-rpath -Wl,/<>/libmaus2-2.0.768+dfsg/src/.libs -L/lib ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_autoarray.so.2 -o .libs/libmaus2_autoarray.so.2.0.768 /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_exception.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/exception/la-LibMausException.lo libmaus2_stacktrace.la libmaus2_demangle.la -lz libtool: link: (cd ".libs" && rm -f "libmaus2_autoarray.so.2" && ln -s "libmaus2_autoarray.so.2.0.768" "libmaus2_autoarray.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_autoarray.so" && ln -s "libmaus2_autoarray.so.2.0.768" "libmaus2_autoarray.so") libtool: link: ar cr .libs/libmaus2_autoarray.a libmaus2/autoarray/la-AutoArray.o libtool: link: ranlib .libs/libmaus2_autoarray.a libtool: link: ( cd ".libs" && rm -f "libmaus2_autoarray.la" && ln -s "../libmaus2_autoarray.la" "libmaus2_autoarray.la" ) libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/exception/.libs/la-LibMausException.o -Wl,-rpath -Wl,/<>/libmaus2-2.0.768+dfsg/src/.libs -L/lib ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_exception.so.2 -o .libs/libmaus2_exception.so.2.0.768 libtool: link: (cd ".libs" && rm -f "libmaus2_exception.so.2" && ln -s "libmaus2_exception.so.2.0.768" "libmaus2_exception.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_exception.so" && ln -s "libmaus2_exception.so.2.0.768" "libmaus2_exception.so") libtool: link: ar cr .libs/libmaus2_exception.a libmaus2/exception/la-LibMausException.o libtool: link: ranlib .libs/libmaus2_exception.a libtool: link: ( cd ".libs" && rm -f "libmaus2_exception.la" && ln -s "../libmaus2_exception.la" "libmaus2_exception.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_parallel.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/parallel/la-SimpleThreadWorkPackage.lo libmaus2/parallel/la-StdSemaphore.lo libmaus2/parallel/la-StdMutex.lo libmaus2/parallel/la-StdSpinLock.lo libmaus2/parallel/la-StaticInitialisation.lo libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libmaus2/parallel/.libs/la-StdSemaphore.o libmaus2/parallel/.libs/la-StdMutex.o libmaus2/parallel/.libs/la-StdSpinLock.o libmaus2/parallel/.libs/la-StaticInitialisation.o -Wl,-rpath -Wl,/<>/libmaus2-2.0.768+dfsg/src/.libs -L/lib ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_parallel.so.2 -o .libs/libmaus2_parallel.so.2.0.768 libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so.2" && ln -s "libmaus2_parallel.so.2.0.768" "libmaus2_parallel.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so" && ln -s "libmaus2_parallel.so.2.0.768" "libmaus2_parallel.so") libtool: link: ar cr .libs/libmaus2_parallel.a libmaus2/parallel/la-SimpleThreadWorkPackage.o libmaus2/parallel/la-StdSemaphore.o libmaus2/parallel/la-StdMutex.o libmaus2/parallel/la-StdSpinLock.o libmaus2/parallel/la-StaticInitialisation.o libtool: link: ranlib .libs/libmaus2_parallel.a libtool: link: ( cd ".libs" && rm -f "libmaus2_parallel.la" && ln -s "../libmaus2_parallel.la" "libmaus2_parallel.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_simd_align_128.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_simd_align_256.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o -Wl,-rpath -Wl,/<>/libmaus2-2.0.768+dfsg/src/.libs ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_128.so.2 -o .libs/libmaus2_simd_align_128.so.2.0.768 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -Wl,-rpath -Wl,/<>/libmaus2-2.0.768+dfsg/src/.libs ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.768 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_128.so.2" && ln -s "libmaus2_simd_align_128.so.2.0.768" "libmaus2_simd_align_128.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_128.so" && ln -s "libmaus2_simd_align_128.so.2.0.768" "libmaus2_simd_align_128.so") libtool: link: ar cr .libs/libmaus2_simd_align_128.a libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o libtool: link: ranlib .libs/libmaus2_simd_align_128.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_128.la" && ln -s "../libmaus2_simd_align_128.la" "libmaus2_simd_align_128.la" ) libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so.2" && ln -s "libmaus2_simd_align_256.so.2.0.768" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.768" "libmaus2_simd_align_256.so") libtool: link: ar cr .libs/libmaus2_simd_align_256.a libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libtool: link: ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /usr/include/c++/11/bits/stl_vector.h: In function ‘uint64_t libmaus2::wavelet::ImpExternalWaveletGeneratorCompactHuffmanParallel::createFinalStream(stream_type&, uint64_t) [with stream_type = std::basic_ostream]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::suffixsort::GapArrayByte::saveGammaGapArray(const string&)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, long long unsigned int>}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, long long unsigned int> >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘_ZN8libmaus27wavelet49ImpExternalWaveletGeneratorCompactHuffmanParallel17createFinalStreamISoEEyRT_y._omp_fn.0’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static std::vector libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder::getSplitKeysInternal(const libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder&, const libmaus2::gamma::SparseGammaGapFileIndexMultiDecoder&, uint64_t, uint64_t)’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::getOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::ostream& libmaus2::util::FileTempFileContainer::openOutputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘virtual std::istream& libmaus2::util::FileTempFileContainer::openInputTempFile(uint64_t)’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::concatenate(const std::vector >&, const string&, bool) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::HeapOrderAdapter>]’: /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::sorting::MergingReadBack<_data_type, _order_type>::MergingReadBack(const string&, const std::vector&, uint64_t, uint64_t) [with _data_type = long long unsigned int; _order_type = std::less]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::SecondComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>}; _Tp = libmaus2::sorting::InPlaceParallelSort::MergeStepRecSerialRequest*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>; _Alloc = std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘static void libmaus2::sorting::InPlaceParallelSort::mergestepRecLevel(iterator, uint64_t, uint64_t, order_type, base_sort&, int, int, std::vector >&, uint64_t) [with iterator = std::pair*; order_type = libmaus2::sorting::PairFileSorting::FirstComp; base_sort = libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::sorting::PairFileSorting::Triple&}; _Tp = libmaus2::sorting::PairFileSorting::Triple; _Alloc = std::allocator >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘void libmaus2::gamma::GammaGapEncoder::encode(iterator, uint64_t) [with iterator = const std::atomic*]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::pair >}; _Tp = std::pair, std::pair >; _Alloc = std::allocator, std::pair > >]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::pair > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::pair >}; _Tp = std::pair, std::pair >; _Alloc = std::allocator, std::pair > >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::pair >*, std::vector, std::pair > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In member function ‘virtual void libmaus2::suffixsort::bwtb3m::MergeStrategyMergeBlock::fillGapRequestObjects(uint64_t)’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::sorting::PairFileSorting::reduce(const string&, uint64_t, uint64_t, out_type&, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::util::KMP::BestPrefix::BestPrefix(stream_type&, uint64_t) [with stream_type = std::basic_istream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘int64_t libmaus2::util::KMP::BestPrefix::operator[](uint64_t) [with stream_type = std::basic_istream]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_14ByteInputTypesILj32EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_13Lz4InputTypesILj64EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_14ByteInputTypesILj64EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_17PacTermInputTypesILj32EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_13PacInputTypesILj32EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_17PacTermInputTypesILj64EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_17CompactInputTypesILj64EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_17CompactInputTypesILj32EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_13Lz4InputTypesILj32EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_13PacInputTypesILj64EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In constructor ‘libmaus2::util::KMP::BestPrefix::BestPrefix(stream_type&, uint64_t) [with stream_type = std::basic_istream]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘int64_t libmaus2::util::KMP::BestPrefix::operator[](uint64_t) [with stream_type = std::basic_istream]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_14Utf8InputTypesILj32EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static uint64_t libmaus2::suffixsort::BwtMergeBlockSortRequestBase::findSplitCommonBounded(const string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:41, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 105 | } | ^ ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp:105:25: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus210suffixsort6bwtb3m20BwtMergeSortTemplateINS0_14Utf8InputTypesILj64EEEE10computeBwtERKNS1_19BwtMergeSortOptionsEPSo._omp_fn.1’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/huffman/HuffmanTree.hpp: In constructor ‘libmaus2::huffman::HuffmanTree::HuffmanTree(iterator, uint64_t, bool, bool, bool) [with iterator = std::_Rb_tree_iterator >]’: ./libmaus2/huffman/HuffmanTree.hpp:643:25: note: parameter passing for argument of type ‘std::_Rb_tree_iterator >’ changed in GCC 7.1 643 | HuffmanTree(iterator F, uint64_t const s, bool const sortbydepth = false, bool const rsetcode = false, bool const rdfsorder = false) | ^~~~~~~~~~~ In file included from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: In static member function ‘static void libmaus2::autoarray::ArrayErase::erase(N*, uint64_t) [with N = libmaus2::suffixsort::GapMergePacket]’, inlined from ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::suffixsort::GapMergePacket; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’ at ./libmaus2/autoarray/AutoArray.hpp:901:23: ./libmaus2/autoarray/AutoArray.hpp:1132:33: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1132 | array[i] = N(); | ^~~~~ ./libmaus2/autoarray/AutoArray.hpp: In constructor ‘libmaus2::autoarray::AutoArray::AutoArray(uint64_t, bool) [with N = libmaus2::suffixsort::GapMergePacket; libmaus2::autoarray::alloc_type atype = libmaus2::autoarray::alloc_type_cxx; erase_type = libmaus2::autoarray::ArrayErase]’: ./libmaus2/autoarray/AutoArray.hpp:1132:44: note: ‘’ declared here 1132 | array[i] = N(); | ^~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/include/c++/11/bits/stl_tree.h:2478:5: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 2478 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateIyE12mergeToDenseERNS_4util21TempFileNameGeneratorEyy._omp_fn.0’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::huffman::RLEncoderBaseTemplate<_bit_writer_type>::implicitFlush() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> >]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2161:5: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2161 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const libmaus2::gamma::SparseGammaGapMultiFile&}; _Tp = libmaus2::gamma::SparseGammaGapMultiFile; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair::SparseGammaGapMergeInfo> >; _KeyOfValue = std::_Select1st::SparseGammaGapMergeInfo> > >; _Compare = std::less; _Alloc = std::allocator::SparseGammaGapMergeInfo> > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘bool libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergePacket(uint64_t&, uint64_t&) [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h: In function ‘_ZN8libmaus25gamma39SparseGammaGapMultiFileLevelSetTemplateIyE5mergeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEy._omp_fn.0’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘typename libmaus2::gamma::SparseGammaGapMergeTemplate<_data_type>::SparseGammaGapMergeInfo* libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::queueMergeInfo(const libmaus2::gamma::SparseGammaGapMultiFile&, const libmaus2::gamma::SparseGammaGapMultiFile&) [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector > libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::merge(const string&, uint64_t) [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleSecondComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = true; bool keepsecond = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In static member function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = true]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h: In function ‘static void libmaus2::sorting::PairFileSorting::mergeTriplesTemplate(uint64_t, const string&, uint64_t, out_type&, uint64_t, std::ostream*) [with comparator_type = libmaus2::sorting::PairFileSorting::TripleFirstComparator; out_type = libmaus2::aio::SynchronousGenericOutput; bool keepfirst = false; bool keepsecond = false]’: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/vector.tcc: In static member function ‘static void libmaus2::sorting::PairFileSorting::sortPairFileTemplate(const std::vector >&, const string&, bool, bool, bool, out_type&, uint64_t, uint64_t, bool, uint64_t, std::ostream*) [with out_type = libmaus2::aio::SynchronousGenericOutput]’: /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::SecondComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>*, std::vector*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort>, std::allocator*, libmaus2::sorting::PairFileSorting::FirstComp, libmaus2::sorting::InPlaceParallelSort::FixedSizeBaseSort> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from ./libmaus2/autoarray/AutoArray.hpp:35, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_algo.h: In static member function ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>]’: /usr/include/c++/11/bits/stl_algo.h:4842:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 4842 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from ./libmaus2/huffman/IndexWriter.hpp:22, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4808:96: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::iterator’} changed in GCC 7.1 4808 | libmaus2::huffman::HuffmanTree::unique_ptr_type uhnode(new libmaus2::huffman::HuffmanTree(chist.begin(),chist.size(),false,true,true)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 5272 | } | ^ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:5272:33: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_map.h: In member function ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::putFile(const std::vector >&) [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:60, from ./libmaus2/serialize/Serialize.hpp:25, from ./libmaus2/autoarray/AutoArray.hpp:47, from ./libmaus2/math/numbits.hpp:24, from ./libmaus2/huffman/IndexWriter.hpp:24, from ./libmaus2/huffman/RLEncoder.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: /usr/include/c++/11/bits/stl_tree.h: In function ‘void libmaus2::gamma::SparseGammaGapMultiFileLevelSetTemplate<_data_type>::checkMergeSingle(bool) [with _data_type = long long unsigned int]’: /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_tree.h:1209:21: note: parameter passing for argument of type ‘std::_Rb_tree::SparseGammaGapMergeInfo> >, std::_Select1st::SparseGammaGapMergeInfo> > >, std::less, std::allocator::SparseGammaGapMergeInfo> > > >::const_iterator’ changed in GCC 7.1 1209 | _M_erase_aux(__position); | ~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:768:0 -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2.la -rpath /usr/lib/arm-linux-gnueabihf libmaus2/la-StaticInitialization.lo libmaus2/bitio/la-CompactArray.lo libmaus2/rank/la-RankTable.lo libmaus2/rank/la-log2table.lo libmaus2/fastx/la-isFastQ.lo libmaus2/wavelet/la-toWaveletTreeBits.lo libmaus2/suffixsort/la-divsufsort.lo libmaus2/digest/la-md5.lo libmaus2/math/la-primes16.lo libmaus2/util/la-OutputFileNameTools.lo libmaus2/select/la-ESelectBase.lo libmaus2/bambam/la-CigarStringParser.lo libmaus2/fastx/la-Phred.lo libmaus2/lz/la-SnappyCompress.lo libmaus2/bambam/la-ReadEndsContainer.lo libmaus2/bambam/la-ReadEnds.lo libmaus2/huffman/la-IndexLoaderBase.lo libmaus2/bambam/la-BamAlignmentDecoderBase.lo libmaus2/bambam/la-StrCmpNum.lo libmaus2/huffman/la-KvInitResult.lo libmaus2/fm/la-MausFmToBwaConversion.lo libmaus2/util/la-TempFileNameGenerator.lo libmaus2/util/la-TempFileNameGeneratorState.lo libmaus2/util/la-ArgInfo.lo libmaus2/util/la-BitList.lo libmaus2/util/la-VarBitList.lo libmaus2/util/la-Concat.lo libmaus2/util/la-ConcatRequest.lo libmaus2/util/la-ConsoleColor.lo libmaus2/util/la-DynamicLoading.lo libmaus2/util/la-GetFileSize.lo libmaus2/util/la-Histogram.lo libmaus2/util/la-HistogramSet.lo libmaus2/util/la-IncreasingList.lo libmaus2/util/la-IntervalTree.lo libmaus2/util/la-GenericIntervalTree.lo libmaus2/util/la-LookupIntervalTree.lo libmaus2/digest/la-md5_interface.lo libmaus2/util/la-MemUsage.lo libmaus2/util/la-nstat.lo libmaus2/util/la-SaturatingCounter.lo libmaus2/util/la-StringSerialisation.lo libmaus2/util/la-SuccinctBorderArray.lo libmaus2/util/la-Terminal.lo libmaus2/util/la-OctetString.lo 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libmaus2/fastx/la-FastABgzfIndexEntry.lo libmaus2/fastx/la-FastABgzfIndex.lo libmaus2/fastx/la-FastAIndexEntry.lo libmaus2/fastx/la-FastAIndex.lo libmaus2/hashing/la-Crc32.lo libmaus2/hashing/la-MurmurHash3.lo libmaus2/lcs/la-LocalBaseConstants.lo libmaus2/lcs/la-LocalEditDistanceResult.lo libmaus2/bambam/la-BamHeaderParserStateBase.lo libmaus2/bambam/la-GeneFlatFile.lo libmaus2/bambam/la-GeneFlatFileEntry.lo libmaus2/trie/la-SimpleTrie.lo libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo libmaus2/alignment/la-FactorMatchInfo.lo libmaus2/alignment/la-KmerInfo.lo libmaus2/bambam/la-SamInfoBase.lo libmaus2/digest/la-SHA1.lo libmaus2/digest/la-SHA2_224.lo libmaus2/digest/la-SHA2_256.lo libmaus2/digest/la-SHA2_384.lo libmaus2/digest/la-SHA2_512.lo libmaus2/digest/la-CRC32.lo libmaus2/digest/la-CRC32C_Core.lo libmaus2/digest/la-CRC32C.lo libmaus2/digest/la-CRC32_Core.lo libmaus2/bambam/parallel/la-ValidationFragment.lo libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo libmaus2/fastx/la-NameInfoBase.lo libmaus2/bambam/parallel/la-RefIdInterval.lo libmaus2/fastx/la-RefPathToken.lo libmaus2/fastx/la-RefPathTokenVector.lo libmaus2/dazzler/db/la-FastaInfo.lo libmaus2/dazzler/db/la-IndexBase.lo libmaus2/dazzler/db/la-DatabaseFile.lo libmaus2/dazzler/db/la-Read.lo libmaus2/dazzler/align/la-Path.lo libmaus2/dazzler/align/la-Overlap.lo libmaus2/lcs/la-AlignmentStatistics.lo libmaus2/fastx/la-SingleWordDNABitBuffer.lo libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo libmaus2/lcs/la-AlignerFactory.lo libmaus2/lcs/la-BandedAlignerFactory.lo libmaus2/aio/la-InputStreamInstance.lo libmaus2/aio/la-OutputStreamInstance.lo libmaus2/aio/la-OutputStreamFactoryContainer.lo libmaus2/dazzler/align/la-TraceBlock.lo libmaus2/dazzler/align/la-ApproximateRun.lo libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo libmaus2/dazzler/align/la-OverlapMeta.lo libmaus2/dazzler/align/la-Tandem.lo libmaus2/dazzler/align/la-TandemVector.lo libmaus2/math/la-GmpInteger.lo libmaus2/math/la-GmpFloat.lo libmaus2/dazzler/align/la-TracePoint.lo libmaus2/lz/la-XzDecoder.lo libmaus2/util/la-ArgParser.lo libmaus2/fastx/la-DNAIndexMetaDataSequence.lo libmaus2/fastx/la-DNAIndexMetaData.lo libmaus2/bambam/la-PileVectorElement.lo libmaus2/bambam/la-PileQualityVectorElement.lo libmaus2/digest/la-SHA3_256.lo libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo libmaus2/rank/la-DNARankBiDirRange.lo libmaus2/lcs/la-NNPTraceElement.lo libmaus2/lcs/la-NNPTraceContainer.lo libmaus2/lcs/la-NNPAlignResult.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo libmaus2/fastx/la-FastAToCompact4BigBand.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo libmaus2/lz/la-ZlibInterface.lo libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo libmaus2/aio/la-FileRemoval.lo libmaus2/rank/la-DNARankMEM.lo libmaus2/lcs/la-ChainAddQueueElement.lo libmaus2/lcs/la-Chain.lo libmaus2/lcs/la-ChainNode.lo libmaus2/lcs/la-ChainNodeInfo.lo libmaus2/lcs/la-ChainRemoveQueueElement.lo libmaus2/lcs/la-ChainSplayTreeNode.lo libmaus2/timing/la-RealTimeClock.lo libmaus2/aio/la-PosixFdOutputStreamFactory.lo libmaus2/dazzler/align/la-OverlapHeader.lo libmaus2/bambam/la-BamAlignment.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo libmaus2/aio/la-InputOutputStreamInstance.lo libmaus2/dazzler/align/la-OverlapInfo.lo libmaus2/dazzler/align/la-OverlapDataInterface.lo libmaus2/util/la-PathTools.lo libmaus2/aio/la-OFStreamOutputStreamFactory.lo libmaus2/aio/la-PosixFdInput.lo libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo libmaus2/lz/la-BgzfDeflateZStreamBase.lo libmaus2/gtf/la-CDS.lo libmaus2/gtf/la-Exon.lo libmaus2/gtf/la-ExonInfo.lo libmaus2/gtf/la-ExonInterval.lo libmaus2/gtf/la-ExonSubInfo.lo libmaus2/protein/la-Blosum62.lo libmaus2/protein/la-CodonMapper.lo libmaus2/bambam/la-ChecksumsFactory.lo libmaus2/vcf/la-VCFSortEntry.lo libmaus2/network/la-CurlInitObject.lo libmaus2/network/la-CurlOutputBlock.lo libmaus2/network/la-CurlResponseAcceptor.lo libmaus2/network/la-HttpCurlResponseAcceptor.lo libmaus2/network/la-FtpCurlResponseAcceptor.lo libmaus2/network/la-CurlObject.lo libmaus2/network/la-CurlObjectReader.lo libmaus2/network/la-CurlObjectThreadCallable.lo libmaus2/network/la-CurlInputStreamBuffer.lo libmaus2/network/la-CurlInputStream.lo libmaus2/network/la-GetHostName.lo libmaus2/aio/la-SecrecyInputStreamFactory.lo libmaus2/aio/la-SecrecyOutputStreamFactory.lo -lz -lgmp -lnettle -lgpgme -lgpg-error -lassuan libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/11/crtbeginS.o libmaus2/.libs/la-StaticInitialization.o libmaus2/bitio/.libs/la-CompactArray.o libmaus2/rank/.libs/la-RankTable.o libmaus2/rank/.libs/la-log2table.o libmaus2/fastx/.libs/la-isFastQ.o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libmaus2/suffixsort/.libs/la-divsufsort.o libmaus2/digest/.libs/la-md5.o libmaus2/math/.libs/la-primes16.o libmaus2/util/.libs/la-OutputFileNameTools.o libmaus2/select/.libs/la-ESelectBase.o libmaus2/bambam/.libs/la-CigarStringParser.o libmaus2/fastx/.libs/la-Phred.o libmaus2/lz/.libs/la-SnappyCompress.o libmaus2/bambam/.libs/la-ReadEndsContainer.o libmaus2/bambam/.libs/la-ReadEnds.o libmaus2/huffman/.libs/la-IndexLoaderBase.o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libmaus2/bambam/.libs/la-StrCmpNum.o libmaus2/huffman/.libs/la-KvInitResult.o libmaus2/fm/.libs/la-MausFmToBwaConversion.o libmaus2/util/.libs/la-TempFileNameGenerator.o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libmaus2/util/.libs/la-ArgInfo.o libmaus2/util/.libs/la-BitList.o libmaus2/util/.libs/la-VarBitList.o libmaus2/util/.libs/la-Concat.o libmaus2/util/.libs/la-ConcatRequest.o libmaus2/util/.libs/la-ConsoleColor.o libmaus2/util/.libs/la-DynamicLoading.o libmaus2/util/.libs/la-GetFileSize.o libmaus2/util/.libs/la-Histogram.o libmaus2/util/.libs/la-HistogramSet.o libmaus2/util/.libs/la-IncreasingList.o libmaus2/util/.libs/la-IntervalTree.o libmaus2/util/.libs/la-GenericIntervalTree.o libmaus2/util/.libs/la-LookupIntervalTree.o libmaus2/digest/.libs/la-md5_interface.o libmaus2/util/.libs/la-MemUsage.o libmaus2/util/.libs/la-nstat.o libmaus2/util/.libs/la-SaturatingCounter.o libmaus2/util/.libs/la-StringSerialisation.o libmaus2/util/.libs/la-SuccinctBorderArray.o libmaus2/util/.libs/la-Terminal.o libmaus2/util/.libs/la-OctetString.o libmaus2/util/.libs/la-Utf8String.o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libmaus2/util/.libs/la-Utf8BlockIndex.o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o libmaus2/bambam/.libs/la-AlignmentValidity.o libmaus2/bambam/.libs/la-BamFlagBase.o libmaus2/bambam/.libs/la-ReadGroup.o libmaus2/bambam/.libs/la-DuplicationMetrics.o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libmaus2/bambam/.libs/la-BamRange.o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libmaus2/huffman/.libs/la-HuffmanTree.o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libmaus2/lz/.libs/la-Lz4Base.o libmaus2/lz/.libs/la-Lz4Compress.o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o libmaus2/lz/.libs/la-lz4.o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libmaus2/fm/.libs/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/.libs/la-FastALineParserLineInfo.o libmaus2/fastx/.libs/la-FastAMatchTable.o libmaus2/lcs/.libs/la-EditDistanceResult.o libmaus2/fastx/.libs/la-FastABgzfIndexEntry.o libmaus2/fastx/.libs/la-FastABgzfIndex.o libmaus2/fastx/.libs/la-FastAIndexEntry.o libmaus2/fastx/.libs/la-FastAIndex.o libmaus2/hashing/.libs/la-Crc32.o libmaus2/hashing/.libs/la-MurmurHash3.o libmaus2/lcs/.libs/la-LocalBaseConstants.o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libmaus2/bambam/.libs/la-GeneFlatFile.o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libmaus2/trie/.libs/la-SimpleTrie.o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/.libs/la-FactorMatchInfo.o libmaus2/alignment/.libs/la-KmerInfo.o libmaus2/bambam/.libs/la-SamInfoBase.o libmaus2/digest/.libs/la-SHA1.o libmaus2/digest/.libs/la-SHA2_224.o libmaus2/digest/.libs/la-SHA2_256.o libmaus2/digest/.libs/la-SHA2_384.o libmaus2/digest/.libs/la-SHA2_512.o libmaus2/digest/.libs/la-CRC32.o libmaus2/digest/.libs/la-CRC32C_Core.o libmaus2/digest/.libs/la-CRC32C.o libmaus2/digest/.libs/la-CRC32_Core.o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libmaus2/fastx/.libs/la-NameInfoBase.o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libmaus2/fastx/.libs/la-RefPathToken.o libmaus2/fastx/.libs/la-RefPathTokenVector.o libmaus2/dazzler/db/.libs/la-FastaInfo.o libmaus2/dazzler/db/.libs/la-IndexBase.o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libmaus2/dazzler/db/.libs/la-Read.o libmaus2/dazzler/align/.libs/la-Path.o libmaus2/dazzler/align/.libs/la-Overlap.o libmaus2/lcs/.libs/la-AlignmentStatistics.o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/.libs/la-AlignerFactory.o libmaus2/lcs/.libs/la-BandedAlignerFactory.o libmaus2/aio/.libs/la-InputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/la-TraceBlock.o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libmaus2/dazzler/align/.libs/la-Tandem.o libmaus2/dazzler/align/.libs/la-TandemVector.o libmaus2/math/.libs/la-GmpInteger.o libmaus2/math/.libs/la-GmpFloat.o libmaus2/dazzler/align/.libs/la-TracePoint.o libmaus2/lz/.libs/la-XzDecoder.o libmaus2/util/.libs/la-ArgParser.o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libmaus2/bambam/.libs/la-PileVectorElement.o libmaus2/bambam/.libs/la-PileQualityVectorElement.o libmaus2/digest/.libs/la-SHA3_256.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/.libs/la-DNARankBiDirRange.o libmaus2/lcs/.libs/la-NNPTraceElement.o libmaus2/lcs/.libs/la-NNPTraceContainer.o libmaus2/lcs/.libs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o libmaus2/lz/.libs/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o libmaus2/aio/.libs/la-FileRemoval.o libmaus2/rank/.libs/la-DNARankMEM.o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libmaus2/lcs/.libs/la-Chain.o libmaus2/lcs/.libs/la-ChainNode.o libmaus2/lcs/.libs/la-ChainNodeInfo.o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libmaus2/timing/.libs/la-RealTimeClock.o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libmaus2/bambam/.libs/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o libmaus2/util/.libs/la-PathTools.o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libmaus2/aio/.libs/la-PosixFdInput.o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libmaus2/gtf/.libs/la-CDS.o libmaus2/gtf/.libs/la-Exon.o libmaus2/gtf/.libs/la-ExonInfo.o libmaus2/gtf/.libs/la-ExonInterval.o libmaus2/gtf/.libs/la-ExonSubInfo.o libmaus2/protein/.libs/la-Blosum62.o libmaus2/protein/.libs/la-CodonMapper.o libmaus2/bambam/.libs/la-ChecksumsFactory.o libmaus2/vcf/.libs/la-VCFSortEntry.o libmaus2/network/.libs/la-CurlInitObject.o libmaus2/network/.libs/la-CurlOutputBlock.o libmaus2/network/.libs/la-CurlResponseAcceptor.o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o libmaus2/network/.libs/la-CurlObject.o libmaus2/network/.libs/la-CurlObjectReader.o libmaus2/network/.libs/la-CurlObjectThreadCallable.o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libmaus2/network/.libs/la-CurlInputStream.o libmaus2/network/.libs/la-GetHostName.o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o -Wl,-rpath -Wl,/<>/libmaus2-2.0.768+dfsg/src/.libs -L/lib -lgmp -lnettle -lgpgme -lgpg-error -lassuan ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc/arm-linux-gnueabihf/11 -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/11/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/11/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/11/../../../arm-linux-gnueabihf/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.768 libtool: link: (cd ".libs" && rm -f "libmaus2.so.2" && ln -s "libmaus2.so.2.0.768" "libmaus2.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2.so" && ln -s "libmaus2.so.2.0.768" "libmaus2.so") libtool: link: ar cr .libs/libmaus2.a libmaus2/la-StaticInitialization.o libmaus2/bitio/la-CompactArray.o libmaus2/rank/la-RankTable.o libmaus2/rank/la-log2table.o libmaus2/fastx/la-isFastQ.o libmaus2/wavelet/la-toWaveletTreeBits.o libmaus2/suffixsort/la-divsufsort.o libmaus2/digest/la-md5.o libmaus2/math/la-primes16.o libmaus2/util/la-OutputFileNameTools.o libmaus2/select/la-ESelectBase.o libmaus2/bambam/la-CigarStringParser.o libmaus2/fastx/la-Phred.o libmaus2/lz/la-SnappyCompress.o libmaus2/bambam/la-ReadEndsContainer.o libmaus2/bambam/la-ReadEnds.o libmaus2/huffman/la-IndexLoaderBase.o libmaus2/bambam/la-BamAlignmentDecoderBase.o libmaus2/bambam/la-StrCmpNum.o libmaus2/huffman/la-KvInitResult.o libmaus2/fm/la-MausFmToBwaConversion.o libmaus2/util/la-TempFileNameGenerator.o libmaus2/util/la-TempFileNameGeneratorState.o libmaus2/util/la-ArgInfo.o libmaus2/util/la-BitList.o libmaus2/util/la-VarBitList.o libmaus2/util/la-Concat.o libmaus2/util/la-ConcatRequest.o libmaus2/util/la-ConsoleColor.o libmaus2/util/la-DynamicLoading.o libmaus2/util/la-GetFileSize.o libmaus2/util/la-Histogram.o libmaus2/util/la-HistogramSet.o libmaus2/util/la-IncreasingList.o libmaus2/util/la-IntervalTree.o libmaus2/util/la-GenericIntervalTree.o libmaus2/util/la-LookupIntervalTree.o libmaus2/digest/la-md5_interface.o libmaus2/util/la-MemUsage.o libmaus2/util/la-nstat.o libmaus2/util/la-SaturatingCounter.o libmaus2/util/la-StringSerialisation.o libmaus2/util/la-SuccinctBorderArray.o libmaus2/util/la-Terminal.o libmaus2/util/la-OctetString.o libmaus2/util/la-Utf8String.o libmaus2/util/la-Utf8BlockIndexDecoder.o libmaus2/util/la-Utf8BlockIndex.o libmaus2/util/la-Utf8DecoderBuffer.o libmaus2/util/la-Utf8DecoderWrapper.o libmaus2/suffixtree/la-CompressedSuffixTree.o libmaus2/bambam/la-AlignmentValidity.o libmaus2/bambam/la-BamFlagBase.o libmaus2/bambam/la-ReadGroup.o libmaus2/bambam/la-DuplicationMetrics.o libmaus2/bambam/la-BamDefaultAdapters.o libmaus2/bambam/la-BamRange.o libmaus2/bambam/la-BamIndexBinChunk.o libmaus2/bambam/la-BamIndexLinearChunk.o libmaus2/huffman/la-HuffmanTree.o libmaus2/bambam/la-BamAlignmentDecoderInfo.o libmaus2/lz/la-Lz4Base.o libmaus2/lz/la-Lz4Compress.o libmaus2/lz/la-Lz4DecoderBuffer.o libmaus2/lz/la-lz4.o libmaus2/fm/la-BidirectionalIndexInterval.o libmaus2/fm/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/la-FastALineParserLineInfo.o libmaus2/fastx/la-FastAMatchTable.o libmaus2/lcs/la-EditDistanceResult.o libmaus2/fastx/la-FastABgzfIndexEntry.o libmaus2/fastx/la-FastABgzfIndex.o libmaus2/fastx/la-FastAIndexEntry.o libmaus2/fastx/la-FastAIndex.o libmaus2/hashing/la-Crc32.o libmaus2/hashing/la-MurmurHash3.o libmaus2/lcs/la-LocalBaseConstants.o libmaus2/lcs/la-LocalEditDistanceResult.o libmaus2/bambam/la-BamHeaderParserStateBase.o libmaus2/bambam/la-GeneFlatFile.o libmaus2/bambam/la-GeneFlatFileEntry.o libmaus2/trie/la-SimpleTrie.o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/la-FactorMatchInfo.o libmaus2/alignment/la-KmerInfo.o libmaus2/bambam/la-SamInfoBase.o libmaus2/digest/la-SHA1.o libmaus2/digest/la-SHA2_224.o libmaus2/digest/la-SHA2_256.o libmaus2/digest/la-SHA2_384.o libmaus2/digest/la-SHA2_512.o libmaus2/digest/la-CRC32.o libmaus2/digest/la-CRC32C_Core.o libmaus2/digest/la-CRC32C.o libmaus2/digest/la-CRC32_Core.o libmaus2/bambam/parallel/la-ValidationFragment.o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.o libmaus2/fastx/la-NameInfoBase.o libmaus2/bambam/parallel/la-RefIdInterval.o libmaus2/fastx/la-RefPathToken.o libmaus2/fastx/la-RefPathTokenVector.o libmaus2/dazzler/db/la-FastaInfo.o libmaus2/dazzler/db/la-IndexBase.o libmaus2/dazzler/db/la-DatabaseFile.o libmaus2/dazzler/db/la-Read.o libmaus2/dazzler/align/la-Path.o libmaus2/dazzler/align/la-Overlap.o libmaus2/lcs/la-AlignmentStatistics.o libmaus2/fastx/la-SingleWordDNABitBuffer.o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/la-AlignerFactory.o libmaus2/lcs/la-BandedAlignerFactory.o libmaus2/aio/la-InputStreamInstance.o libmaus2/aio/la-OutputStreamInstance.o libmaus2/aio/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/la-TraceBlock.o libmaus2/dazzler/align/la-ApproximateRun.o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/la-OverlapMeta.o libmaus2/dazzler/align/la-Tandem.o libmaus2/dazzler/align/la-TandemVector.o libmaus2/math/la-GmpInteger.o libmaus2/math/la-GmpFloat.o libmaus2/dazzler/align/la-TracePoint.o libmaus2/lz/la-XzDecoder.o libmaus2/util/la-ArgParser.o libmaus2/fastx/la-DNAIndexMetaDataSequence.o libmaus2/fastx/la-DNAIndexMetaData.o libmaus2/bambam/la-PileVectorElement.o libmaus2/bambam/la-PileQualityVectorElement.o libmaus2/digest/la-SHA3_256.o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/la-DNARankBiDirRange.o libmaus2/lcs/la-NNPTraceElement.o libmaus2/lcs/la-NNPTraceContainer.o libmaus2/lcs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o libmaus2/fastx/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o libmaus2/lz/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o libmaus2/aio/la-FileRemoval.o libmaus2/rank/la-DNARankMEM.o libmaus2/lcs/la-ChainAddQueueElement.o libmaus2/lcs/la-Chain.o libmaus2/lcs/la-ChainNode.o libmaus2/lcs/la-ChainNodeInfo.o libmaus2/lcs/la-ChainRemoveQueueElement.o libmaus2/lcs/la-ChainSplayTreeNode.o libmaus2/timing/la-RealTimeClock.o libmaus2/aio/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/la-OverlapHeader.o libmaus2/bambam/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o libmaus2/aio/la-InputOutputStreamInstance.o libmaus2/dazzler/align/la-OverlapInfo.o libmaus2/dazzler/align/la-OverlapDataInterface.o libmaus2/util/la-PathTools.o libmaus2/aio/la-OFStreamOutputStreamFactory.o libmaus2/aio/la-PosixFdInput.o libmaus2/lz/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/la-BgzfDeflateZStreamBase.o libmaus2/gtf/la-CDS.o libmaus2/gtf/la-Exon.o libmaus2/gtf/la-ExonInfo.o libmaus2/gtf/la-ExonInterval.o libmaus2/gtf/la-ExonSubInfo.o libmaus2/protein/la-Blosum62.o libmaus2/protein/la-CodonMapper.o libmaus2/bambam/la-ChecksumsFactory.o libmaus2/vcf/la-VCFSortEntry.o libmaus2/network/la-CurlInitObject.o libmaus2/network/la-CurlOutputBlock.o libmaus2/network/la-CurlResponseAcceptor.o libmaus2/network/la-HttpCurlResponseAcceptor.o libmaus2/network/la-FtpCurlResponseAcceptor.o libmaus2/network/la-CurlObject.o libmaus2/network/la-CurlObjectReader.o libmaus2/network/la-CurlObjectThreadCallable.o libmaus2/network/la-CurlInputStreamBuffer.o libmaus2/network/la-CurlInputStream.o libmaus2/network/la-GetHostName.o libmaus2/aio/la-SecrecyInputStreamFactory.o libmaus2/aio/la-SecrecyOutputStreamFactory.o libtool: link: ranlib .libs/libmaus2.a libtool: link: ( cd ".libs" && rm -f "libmaus2.la" && ln -s "../libmaus2.la" "libmaus2.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testThreadPool test/testThreadPool-testThreadPool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g 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-Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testAIO test/testAIO-testAIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbitbtree test/testbitbtree-testbitbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat 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-Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbtree test/testbtree-testbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testBWTDyn test/testBWTDyn-testBWTDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testDivSufSort test/testDivSufSort-testDivSufSort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: 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./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbtree test/testbtree-testbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testDivSufSort test/testDivSufSort-testDivSufSort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testDNABitWords test/testDNABitWords-testDNABitWords.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testFastRead test/testFastRead-testFastRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testHuffman test/testHuffman-testHuffman.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la 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./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testarraydecode test/testarraydecode-testarraydecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp 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./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testhashcollisions test/testhashcollisions-testhashcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgunzip test/testgunzip-testgunzip.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ 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libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testhashcollisions test/testhashcollisions-testhashcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsimplehash test/testsimplehash-testsimplehash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdl test/testdl-testdl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdifenc test/testdifenc-testdifenc.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastarewrite test/testfastarewrite-testfastarewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdl test/testdl-testdl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdifenc test/testdifenc-testdifenc.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastarecode test/testfastarecode-testfastarecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamtofastq test/testbamtofastq-testbamtofastq.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastarewrite test/testfastarewrite-testfastarewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamrange test/testbamrange-testbamrange.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamdamage test/testbamdamage-testbamdamage.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastarecode test/testfastarecode-testfastarecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamtofastq test/testbamtofastq-testbamtofastq.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgamma test/testgamma-testgamma.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamrange test/testbamrange-testbamrange.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamdamage test/testbamdamage-testbamdamage.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 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../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testscramtosam test/testscramtosam-testscramtosam.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgamma test/testgamma-testgamma.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcompact test/testcompact-testcompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testpacdecode test/testpacdecode-testpacdecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbytetocompact test/testbytetocompact-testbytetocompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testscramtosam test/testscramtosam-testscramtosam.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testutf8split test/testutf8split-testutf8split.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcirchash test/testcirchash-testcirchash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testrmmtree test/testrmmtree-testrmmtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testpacdecode test/testpacdecode-testpacdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testutf8split test/testutf8split-testutf8split.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcst test/testcst-testcst.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcirchash test/testcirchash-testcirchash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testrmmtree test/testrmmtree-testrmmtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamcmp test/testbamcmp-testbamcmp.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamdif test/testbamdif-testbamdif.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testqreorder test/testqreorder-testqreorder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcst test/testcst-testcst.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamcmp test/testbamcmp-testbamcmp.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfqbgzf test/testfqbgzf-testfqbgzf.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamdif test/testbamdif-testbamdif.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testqreorder test/testqreorder-testqreorder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamindex test/testbamindex-testbamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat 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--tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastqstream test/testfastqstream-testfastqstream.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamindex test/testbamindex-testbamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamrewrite test/testbamrewrite-testbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsort test/testsort-testsort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcollatespeed test/testcollatespeed-testcollatespeed.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamheaderparser test/testbamheaderparser-testbamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsort test/testsort-testsort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testexternalsort test/testexternalsort-testexternalsort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcollatespeed test/testcollatespeed-testcollatespeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbammergecollate test/testbammergecollate-testbammergecollate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamheaderparser test/testbamheaderparser-testbamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbammergequeryname test/testbammergequeryname-testbammergequeryname.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamcat test/testbamcat-testbamcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbammergecollate test/testbammergecollate-testbammergecollate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbammergequeryname test/testbammergequeryname-testbammergequeryname.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testautoarray2d test/testautoarray2d-testautoarray2d.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamcat test/testbamcat-testbamcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ 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libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testautoarray2d test/testautoarray2d-testautoarray2d.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastaparse test/testfastaparse-testfastaparse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testhist test/testhist-testhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testeditdistance test/testeditdistance-testeditdistance.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link 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./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testzlibconcat test/testzlibconcat-testzlibconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgaparraybyte test/testgaparraybyte-testgaparraybyte.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall 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./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastablockrecode test/testfastablockrecode-testfastablockrecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testrlhist test/testrlhist-testrlhist.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testnumcpus test/testnumcpus-testnumcpus.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfaindex test/testfaindex-testfaindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall 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-rdynamic -o testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testnumcpus test/testnumcpus-testnumcpus.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 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libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdiag test/testdiag-testdiag.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsimpletrie test/testsimpletrie-testsimpletrie.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgeneflatfile test/testgeneflatfile-testgeneflatfile.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlru test/testlru-testlru.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall 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libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsimpletrie test/testsimpletrie-testsimpletrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlinebuffer test/testlinebuffer-testlinebuffer.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsamdecoder test/testsamdecoder-testsamdecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlinebuffer test/testlinebuffer-testlinebuffer.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsamdecoder test/testsamdecoder-testsamdecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 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libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsha test/testsha-testsha.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testunsignedinteger test/testunsignedinteger-testunsignedinteger.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testmd5 test/testmd5-testmd5.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread 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./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbammateerase test/testbammateerase-testbammateerase.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lgmp -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testmapperm test/testmapperm-testmapperm.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall 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./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o -L/lib ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lgmp -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastqtobam test/testfastqtobam-testfastqtobam.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsamrecoding 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastqtobam test/testfastqtobam-testfastqtobam.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzlerdb test/testdazzlerdb-testdazzlerdb.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastashred test/testfastashred-testfastashred.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsamrecoding test/testsamrecoding-testsamrecoding.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testalignerspeed test/testalignerspeed-testalignerspeed.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdazzlerdb test/testdazzlerdb-testdazzlerdb.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastasingleline test/testfastasingleline-testfastasingleline.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastashred test/testfastashred-testfastashred.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testalignerspeed test/testalignerspeed-testalignerspeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testxz test/testxz-testxz.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzlerindex test/testdazzlerindex-testdazzlerindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastasingleline test/testfastasingleline-testfastasingleline.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testargparser test/testargparser-testargparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testxz test/testxz-testxz.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdazzlerindex test/testdazzlerindex-testdazzlerindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 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--tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastaexplode test/testfastaexplode-testfastaexplode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testargparser test/testargparser-testargparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfaextract test/testfaextract-testfaextract.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdnarank test/testdnarank-testdnarank.o ./.libs/libmaus2.so 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-Wl,relro -rdynamic -o .libs/testmurmur3 test/testmurmur3-testmurmur3.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testpairalign test/testpairalign-testpairalign.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbwtconstruction test/testbwtconstruction-testbwtconstruction.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsplaytree test/testsplaytree-testsplaytree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testarrayinput test/testarrayinput-testarrayinput.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsymcnt test/testsymcnt-testsymcnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbwtconstruction test/testbwtconstruction-testbwtconstruction.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testarrayinput test/testarrayinput-testarrayinput.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgammapd test/testgammapd-testgammapd.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsymcnt test/testsymcnt-testsymcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testserialisedsorting test/testserialisedsorting-testserialisedsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgammapd test/testgammapd-testgammapd.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testserialisedsorting test/testserialisedsorting-testserialisedsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testnpl test/testnpl-testnpl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 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libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testintervaltree test/testintervaltree-testintervaltree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testnpl test/testnpl-testnpl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testkcnt test/testkcnt-testkcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o teststringgraph test/teststringgraph-teststringgraph.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 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libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/teststringgraph test/teststringgraph-teststringgraph.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testmatrix test/testmatrix-testmatrix.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlognormal test/testlognormal-testlognormal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testconvpowercache test/testconvpowercache-testconvpowercache.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlassort test/testlassort-testlassort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testmatrix test/testmatrix-testmatrix.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testconvpowercache test/testconvpowercache-testconvpowercache.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlassort test/testlassort-testlassort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testpanic test/testpanic-testpanic.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testavlset test/testavlset-testavlset.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlibcurl test/testlibcurl-testlibcurl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testpanic test/testpanic-testpanic.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testCopy test/testCopy-testCopy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testavlset test/testavlset-testavlset.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlibcurl test/testlibcurl-testlibcurl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>/libmaus2-2.0.768+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testCopy test/testCopy-testCopy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread make[3]: Leaving directory '/<>/libmaus2-2.0.768+dfsg/src' Making all in test make[3]: Entering directory '/<>/libmaus2-2.0.768+dfsg/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/libmaus2-2.0.768+dfsg/test' make[3]: Entering directory '/<>/libmaus2-2.0.768+dfsg' make[3]: Leaving directory '/<>/libmaus2-2.0.768+dfsg' make[2]: Leaving directory '/<>/libmaus2-2.0.768+dfsg' make[1]: Leaving directory '/<>/libmaus2-2.0.768+dfsg' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libmaus2-2.0.768+dfsg' Making check in src make[2]: Entering directory '/<>/libmaus2-2.0.768+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libmaus2-2.0.768+dfsg/src' Making check in test make[2]: Entering directory '/<>/libmaus2-2.0.768+dfsg/test' make check-TESTS make[3]: Entering directory '/<>/libmaus2-2.0.768+dfsg/test' make[4]: Entering directory '/<>/libmaus2-2.0.768+dfsg/test' PASS: testarraydecode.sh PASS: testarrayinput.sh PASS: testargparser.sh PASS: testautoarray2d.sh PASS: testbitbtree.sh FAIL: testdnarank.sh PASS: testintervaltree.sh PASS: testAIO.sh FAIL: testRank.sh PASS: testBitIO.sh =========================================== libmaus2 2.0.768: test/test-suite.log =========================================== # TOTAL: 10 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 2 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: testRank.sh ================= /<>/libmaus2-2.0.768+dfsg/test /<>/libmaus2-2.0.768+dfsg/test /<>/libmaus2-2.0.768+dfsg/test [V] testing FastRank...done. [V] testing RunLengthBitVector...done. [V] testing E2Append: [V]rank class libmaus2::rank::ERank222BAppend writer type libmaus2::bitio::BitWriterTemplate data type unsigned long long [V] loop 1 [V] libmaus2::rank::ERank222BAppendDynamic loop 1 [V] loop 2 [V] libmaus2::rank::ERank222BAppendDynamic loop 2 [V] loop 3 [V] libmaus2::rank::ERank222BAppendDynamic loop 3 [V] loop 4 [V] libmaus2::rank::ERank222BAppendDynamic loop 4 [V] loop 5 [V] libmaus2::rank::ERank222BAppendDynamic loop 5 [V] testing WaveletTree rank/select random (size 128)...done. [V] testing WaveletTree smaller/larger...done. [V] testing CacheLineRank: terminate called after throwing an instance of 'libmaus2::exception::LibMausException' what(): AutoArray failed to allocate 1398102 elements (11184816 bytes) current total allocation 11521707 /<>/libmaus2-2.0.768+dfsg/src/.libs/libmaus2_stacktrace.so.2(libmaus2::stacktrace::StackTrace::StackTrace()+0x3f)[0xf74c07c8] /<>/libmaus2-2.0.768+dfsg/src/.libs/libmaus2_exception.so.2(libmaus2::exception::LibMausException::LibMausException()+0x1d)[0xf794d5da] /<>/libmaus2-2.0.768+dfsg/src/.libs/testRank(libmaus2::autoarray::AutoArrayAllocate::allocate(unsigned long long)+0x61)[0x923492] /<>/libmaus2-2.0.768+dfsg/src/.libs/testRank(testCacheLineRank()+0x89)[0x90776e] /<>/libmaus2-2.0.768+dfsg/src/.libs/testRank(main+0xe7)[0x9011f0] /lib/arm-linux-gnueabihf/libc.so.6(+0x2165a)[0xf75f665a] /lib/arm-linux-gnueabihf/libc.so.6(__libc_start_main+0x61)[0xf75f670e] ./testRank.sh: line 7: 21572 Aborted (core dumped) ../src/testRank Exiting with return code 134 FAIL testRank.sh (exit status: 134) FAIL: testdnarank.sh ==================== /<>/libmaus2-2.0.768+dfsg/test /<>/libmaus2-2.0.768+dfsg/test /<>/libmaus2-2.0.768+dfsg/test [V] running short tests... AutoArray failed to allocate 16 elements (128 bytes) current total allocation 341115 /<>/libmaus2-2.0.768+dfsg/src/.libs/libmaus2_stacktrace.so.2(libmaus2::stacktrace::StackTrace::StackTrace()+0x3f)[0xf70527c8] /<>/libmaus2-2.0.768+dfsg/src/.libs/libmaus2_exception.so.2(libmaus2::exception::LibMausException::LibMausException()+0x1d)[0xf748e5da] /<>/libmaus2-2.0.768+dfsg/src/.libs/testdnarank(libmaus2::autoarray::AutoArrayAllocate::allocate(unsigned long long)+0x61)[0x46577a] /<>/libmaus2-2.0.768+dfsg/src/.libs/testdnarank(libmaus2::rank::DNARankTemplate<64u>::loadFromRunLength(std::vector, std::allocator >, std::allocator, std::allocator > > > const&, unsigned long long)+0x185)[0x46f70e] /<>/libmaus2-2.0.768+dfsg/src/.libs/testdnarank(void testShort >(unsigned long long)+0x239)[0x48a81a] /<>/libmaus2-2.0.768+dfsg/src/.libs/testdnarank(main+0x3b)[0x443bd0] /lib/arm-linux-gnueabihf/libc.so.6(+0x2165a)[0xf718865a] /lib/arm-linux-gnueabihf/libc.so.6(__libc_start_main+0x61)[0xf718870e] Exiting with return code 1 FAIL testdnarank.sh (exit status: 1) ============================================================================ Testsuite summary for libmaus2 2.0.768 ============================================================================ # TOTAL: 10 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 2 # XPASS: 0 # ERROR: 0 ============================================================================ See test/test-suite.log Please report to germant@miltenyibiotec.de ============================================================================ make[4]: *** [Makefile:712: test-suite.log] Error 1 make[4]: Leaving directory '/<>/libmaus2-2.0.768+dfsg/test' make[3]: *** [Makefile:820: check-TESTS] Error 2 make[3]: Leaving directory '/<>/libmaus2-2.0.768+dfsg/test' make[2]: *** [Makefile:955: check-am] Error 2 make[2]: Leaving directory '/<>/libmaus2-2.0.768+dfsg/test' make[1]: *** [Makefile:679: check-recursive] Error 1 make[1]: Leaving directory '/<>/libmaus2-2.0.768+dfsg' dh_auto_test: error: make -j4 check VERBOSE=1 returned exit code 2 make: *** [debian/rules:17: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-09-10T19:32:04Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 4508 Distribution: impish-proposed Fail-Stage: build Host Architecture: armhf Install-Time: 19 Job: libmaus2_2.0.768+dfsg-2.dsc Machine Architecture: arm64 Package: libmaus2 Package-Time: 4531 Source-Version: 2.0.768+dfsg-2 Space: n/a Status: attempted Version: 2.0.768+dfsg-2 -------------------------------------------------------------------------------- Finished at 2021-09-10T19:32:04Z Build needed 01:15:31, no disk space E: Build failure (dpkg-buildpackage died) Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=armhf PACKAGEBUILD-21678578 Scanning for processes to kill in build PACKAGEBUILD-21678578