https://launchpad.net/ubuntu/+source/libncl/2.1.21+git20190531.feceb81-1/+build/17445636 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-004 4.4.0-159-generic #187-Ubuntu SMP Thu Aug 1 16:28:09 UTC 2019 ppc64le Buildd toolchain package versions: launchpad-buildd_176 python-lpbuildd_176 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 20 Aug 17:14:40 ntpdate[1870]: adjust time server 10.211.37.1 offset -0.000284 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17445636 --image-type chroot /home/buildd/filecache-default/8ecade3ba39252410f2285d8b2f76e6336361d85 Creating target for build PACKAGEBUILD-17445636 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17445636 Starting target for build PACKAGEBUILD-17445636 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17445636 'deb http://ftpmaster.internal/ubuntu eoan main universe' 'deb http://ftpmaster.internal/ubuntu eoan-security main universe' 'deb http://ftpmaster.internal/ubuntu eoan-updates main universe' 'deb http://ftpmaster.internal/ubuntu eoan-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-17445636 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17445636 Updating target for build PACKAGEBUILD-17445636 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu eoan-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu eoan-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main ppc64el Packages [929 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/universe ppc64el Packages [8752 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5296 kB] Get:9 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el Packages [107 kB] Get:10 http://ftpmaster.internal/ubuntu eoan-proposed/main Translation-en [53.6 kB] Get:11 http://ftpmaster.internal/ubuntu eoan-proposed/universe ppc64el Packages [680 kB] Get:12 http://ftpmaster.internal/ubuntu eoan-proposed/universe Translation-en [383 kB] Fetched 17.2 MB in 5s (3798 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-9 g++-9 gcc-9 gcc-9-base libapt-pkg5.90 libgcc-9-dev libisl21 libjson-c4 libpcre2-8-0 libreadline8 libstdc++-9-dev The following packages will be upgraded: adduser advancecomp apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils build-essential bzip2 ca-certificates coreutils cpp cpp-8 dash debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-8 gcc gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libargon2-1 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libidn11 libidn2-0 libitm1 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.28 libpng16-16 libprocps7 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.28 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv sysvinit-utils tar tzdata util-linux xz-utils zlib1g 149 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 129 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc6-dev ppc64el 2.29-0ubuntu3 [2565 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc-dev-bin ppc64el 2.29-0ubuntu3 [72.6 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el linux-libc-dev ppc64el 5.2.0-13.14 [1078 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc6 ppc64el 2.29-0ubuntu3 [2707 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc-bin ppc64el 2.29-0ubuntu3 [627 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc-9-base ppc64el 9.2.1-2ubuntu1 [19.3 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgcc1 ppc64el 1:9.2.1-2ubuntu1 [29.6 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main ppc64el base-files ppc64el 10.2ubuntu4 [60.7 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main ppc64el debianutils ppc64el 4.8.6.3 [86.3 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main ppc64el bash ppc64el 5.0-4ubuntu1 [723 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main ppc64el bsdutils ppc64el 1:2.34-0.1ubuntu1 [68.0 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main ppc64el coreutils ppc64el 8.30-3ubuntu1 [1313 kB] Get:13 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el lsb-base all 11.0.1ubuntu1 [12.6 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main ppc64el tar ppc64el 1.30+dfsg-6 [288 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main ppc64el dpkg ppc64el 1.19.7ubuntu1 [1158 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main ppc64el libperl5.28 ppc64el 5.28.1-6 [3837 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl ppc64el 5.28.1-6 [204 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl-base ppc64el 5.28.1-6 [1514 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl-modules-5.28 all 5.28.1-6 [2818 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main ppc64el bzip2 ppc64el 1.0.6-9.2 [36.8 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main ppc64el libbz2-1.0 ppc64el 1.0.6-9.2 [43.3 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.6ubuntu1 [716 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgdbm6 ppc64el 1.18.1-4 [31.6 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgdbm-compat4 ppc64el 1.18.1-4 [6660 B] Get:25 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-1ubuntu3 [57.0 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main ppc64el debconf all 1.5.73 [122 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main ppc64el dash ppc64el 0.5.10.2-6 [99.9 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main ppc64el diffutils ppc64el 1:3.7-3 [227 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main ppc64el findutils ppc64el 4.6.0+git+20190209-2ubuntu1 [362 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main ppc64el grep ppc64el 3.3-1 [157 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main ppc64el gzip ppc64el 1.10-0ubuntu2 [103 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main ppc64el libblkid1 ppc64el 2.34-0.1ubuntu1 [158 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpcre2-8-0 ppc64el 10.32-5 [183 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main ppc64el libselinux1 ppc64el 2.9-2 [82.3 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmount1 ppc64el 2.34-0.1ubuntu1 [170 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsmartcols1 ppc64el 2.34-0.1ubuntu1 [113 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main ppc64el libuuid1 ppc64el 2.34-0.1ubuntu1 [22.0 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main ppc64el libfdisk1 ppc64el 2.34-0.1ubuntu1 [193 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main ppc64el libncurses6 ppc64el 6.1+20190803-1ubuntu1 [120 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtinfo6 ppc64el 6.1+20190803-1ubuntu1 [101 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main ppc64el libncursesw6 ppc64el 6.1+20190803-1ubuntu1 [152 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main ppc64el fdisk ppc64el 2.34-0.1ubuntu1 [128 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main ppc64el login ppc64el 1:4.5-1.1ubuntu2 [269 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main ppc64el util-linux ppc64el 2.34-0.1ubuntu1 [1065 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main ppc64el ncurses-bin ppc64el 6.1+20190803-1ubuntu1 [179 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main ppc64el sed ppc64el 4.7-1 [203 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdebconfclient0 ppc64el 0.249ubuntu1 [6428 B] Get:48 http://ftpmaster.internal/ubuntu eoan/main ppc64el base-passwd ppc64el 3.5.46 [51.0 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main ppc64el init-system-helpers all 1.57 [38.3 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main ppc64el ncurses-base all 6.1+20190803-1ubuntu1 [17.7 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main ppc64el sysvinit-utils ppc64el 2.95-5ubuntu2 [22.8 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main ppc64el libstdc++6 ppc64el 9.2.1-2ubuntu1 [543 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblz4-1 ppc64el 1.9.1-1 [74.8 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblzma5 ppc64el 5.2.4-1 [110 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtasn1-6 ppc64el 4.14-2 [44.6 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main ppc64el libnettle6 ppc64el 3.4.1-1 [145 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main ppc64el libhogweed4 ppc64el 3.4.1-1 [145 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main ppc64el libunistring2 ppc64el 0.9.10-2 [386 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main ppc64el libidn2-0 ppc64el 2.2.0-1 [53.4 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/main ppc64el libp11-kit0 ppc64el 0.23.16.1-2 [200 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgnutls30 ppc64el 3.6.9-4 [773 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main ppc64el systemd-sysv ppc64el 240-6ubuntu9 [9384 B] Get:63 http://ftpmaster.internal/ubuntu eoan/main ppc64el libacl1 ppc64el 2.2.53-4 [20.8 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main ppc64el libapparmor1 ppc64el 2.13.2-9ubuntu7 [38.5 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main ppc64el libaudit-common all 1:2.8.5-2ubuntu1 [4084 B] Get:66 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcap-ng0 ppc64el 0.7.9-2 [12.4 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/main ppc64el libaudit1 ppc64el 1:2.8.5-2ubuntu1 [42.7 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcap2 ppc64el 1:2.25-2 [14.9 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/main ppc64el libjson-c4 ppc64el 0.13.1+dfsg-4 [33.0 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main ppc64el libargon2-1 ppc64el 0~20171227-0.2 [21.9 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main ppc64el libudev1 ppc64el 240-6ubuntu9 [78.0 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.155-2ubuntu5 [153 kB] Get:73 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libssl1.1 ppc64el 1.1.1c-1ubuntu4 [1357 kB] Get:74 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libcryptsetup12 ppc64el 2:2.2.0-1ubuntu1 [215 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgpg-error0 ppc64el 1.36-7 [69.0 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main ppc64el libidn11 ppc64el 1.33-2.2ubuntu2 [48.8 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main ppc64el libkmod2 ppc64el 26-1ubuntu1 [51.8 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam0g ppc64el 1.3.1-5ubuntu1 [62.7 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/main ppc64el libseccomp2 ppc64el 2.4.1-0ubuntu0.19.10.3 [48.6 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main ppc64el mount ppc64el 2.34-0.1ubuntu1 [122 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsepol1 ppc64el 2.9-2 [286 kB] Get:82 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsemanage-common all 2.9-3 [9760 B] Get:83 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsemanage1 ppc64el 2.9-3 [95.2 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-modules-bin ppc64el 1.3.1-5ubuntu1 [43.6 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-modules ppc64el 1.3.1-5ubuntu1 [287 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main ppc64el passwd ppc64el 1:4.5-1.1ubuntu2 [828 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main ppc64el adduser all 3.118ubuntu1 [163 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main ppc64el systemd ppc64el 240-6ubuntu9 [4034 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsystemd0 ppc64el 240-6ubuntu9 [300 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main ppc64el libzstd1 ppc64el 1.4.2+dfsg-1 [299 kB] Get:91 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libapt-pkg5.90 ppc64el 1.9.3 [910 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgcrypt20 ppc64el 1.8.4-5ubuntu1 [449 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpgv ppc64el 2.2.12-1ubuntu3 [237 kB] Get:94 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el apt ppc64el 1.9.3 [1309 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main ppc64el libext2fs2 ppc64el 1.45.2-1ubuntu1 [215 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main ppc64el e2fsprogs ppc64el 1.45.2-1ubuntu1 [580 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/main ppc64el init ppc64el 1.57 [6088 B] Get:98 http://ftpmaster.internal/ubuntu eoan/main ppc64el libattr1 ppc64el 1:2.4.48-4 [13.7 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-runtime all 1.3.1-5ubuntu1 [37.3 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpcre3 ppc64el 2:8.39-12 [239 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcom-err2 ppc64el 1.45.2-1ubuntu1 [10.5 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/main ppc64el libprocps7 ppc64el 2:3.3.15-2ubuntu3 [36.0 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main ppc64el libss2 ppc64el 1.45.2-1ubuntu1 [12.5 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/main ppc64el procps ppc64el 2:3.3.15-2ubuntu3 [247 kB] Get:105 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el openssl ppc64el 1.1.1c-1ubuntu4 [618 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main ppc64el ca-certificates all 20190110 [146 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main ppc64el dmsetup ppc64el 2:1.02.155-2ubuntu5 [82.4 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/main ppc64el readline-common all 8.0-2 [53.4 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/main ppc64el libreadline8 ppc64el 8.0-2 [143 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/main ppc64el libslang2 ppc64el 2.3.2-4 [415 kB] Get:111 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libsqlite3-0 ppc64el 3.29.0-2 [564 kB] Get:112 http://ftpmaster.internal/ubuntu eoan/main ppc64el tzdata all 2019b-2 [187 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/main ppc64el xz-utils ppc64el 5.2.4-1 [87.9 kB] Get:114 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpng16-16 ppc64el 1.6.37-1 [208 kB] Get:115 http://ftpmaster.internal/ubuntu eoan/main ppc64el multiarch-support ppc64el 2.29-0ubuntu3 [6928 B] Get:116 http://ftpmaster.internal/ubuntu eoan/main ppc64el advancecomp ppc64el 2.1-2.1 [248 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.32.51.20190813-1ubuntu1 [2099 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main ppc64el libbinutils ppc64el 2.32.51.20190813-1ubuntu1 [510 kB] Get:119 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils ppc64el 2.32.51.20190813-1ubuntu1 [3392 B] Get:120 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils-common ppc64el 2.32.51.20190813-1ubuntu1 [202 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main ppc64el libisl21 ppc64el 0.21-1 [683 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmpfr6 ppc64el 4.0.2-1 [263 kB] Get:123 http://ftpmaster.internal/ubuntu eoan/main ppc64el cpp-9 ppc64el 9.2.1-2ubuntu1 [9786 kB] Get:124 http://ftpmaster.internal/ubuntu eoan/main ppc64el g++ ppc64el 4:9.1.0-1ubuntu4 [1596 B] Get:125 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc ppc64el 4:9.1.0-1ubuntu4 [5224 B] Get:126 http://ftpmaster.internal/ubuntu eoan/main ppc64el cpp ppc64el 4:9.1.0-1ubuntu4 [27.6 kB] Get:127 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcc1-0 ppc64el 9.2.1-2ubuntu1 [52.8 kB] Get:128 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgomp1 ppc64el 9.2.1-2ubuntu1 [92.6 kB] Get:129 http://ftpmaster.internal/ubuntu eoan/main ppc64el libitm1 ppc64el 9.2.1-2ubuntu1 [29.5 kB] Get:130 http://ftpmaster.internal/ubuntu eoan/main ppc64el libatomic1 ppc64el 9.2.1-2ubuntu1 [9936 B] Get:131 http://ftpmaster.internal/ubuntu eoan/main ppc64el libasan5 ppc64el 9.2.1-2ubuntu1 [408 kB] Get:132 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblsan0 ppc64el 9.2.1-2ubuntu1 [148 kB] Get:133 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtsan0 ppc64el 9.2.1-2ubuntu1 [305 kB] Get:134 http://ftpmaster.internal/ubuntu eoan/main ppc64el libubsan1 ppc64el 9.2.1-2ubuntu1 [140 kB] Get:135 http://ftpmaster.internal/ubuntu eoan/main ppc64el libquadmath0 ppc64el 9.2.1-2ubuntu1 [149 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgcc-9-dev ppc64el 9.2.1-2ubuntu1 [1259 kB] Get:137 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc-9 ppc64el 9.2.1-2ubuntu1 [10.4 MB] Get:138 http://ftpmaster.internal/ubuntu eoan/main ppc64el libstdc++-9-dev ppc64el 9.2.1-2ubuntu1 [1721 kB] Get:139 http://ftpmaster.internal/ubuntu eoan/main ppc64el g++-9 ppc64el 9.2.1-2ubuntu1 [11.2 MB] Get:140 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Setting up libcc1-0:ppc64el (9.2.1-2ubuntu1) ... Setting up liblsan0:ppc64el (9.2.1-2ubuntu1) ... Setting up libitm1:ppc64el (9.2.1-2ubuntu1) ... Setting up libgdbm6:ppc64el (1.18.1-4) ... Setting up libtsan0:ppc64el (9.2.1-2ubuntu1) ... Setting up pinentry-curses (1.1.0-3) ... Setting up libreadline8:ppc64el (8.0-2) ... Setting up e2fsprogs (1.45.2-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Created symlink /etc/systemd/system/timers.target.wants/e2scrub_all.timer -> /lib/systemd/system/e2scrub_all.timer. Created symlink /etc/systemd/system/default.target.wants/e2scrub_reap.service -> /lib/systemd/system/e2scrub_reap.service. Setting up libgcc-9-dev:ppc64el (9.2.1-2ubuntu1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 2 added, 7 removed; done. Setting up optipng (0.7.7-1) ... Setting up libgdbm-compat4:ppc64el (1.18.1-4) ... Setting up libgcc-8-dev:ppc64el (8.3.0-21ubuntu1) ... Setting up libperl5.28:ppc64el (5.28.1-6) ... Setting up cpp (4:9.1.0-1ubuntu4) ... Setting up gpgconf (2.2.12-1ubuntu3) ... Setting up libc6-dev:ppc64el (2.29-0ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.32.51.20190813-1ubuntu1) ... Setting up gpg (2.2.12-1ubuntu3) ... Setting up libstdc++-8-dev:ppc64el (8.3.0-21ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu3) ... Setting up libstdc++-9-dev:ppc64el (9.2.1-2ubuntu1) ... Setting up pkgbinarymangler (144) ... Setting up binutils (2.32.51.20190813-1ubuntu1) ... Setting up perl (5.28.1-6) ... Setting up libdpkg-perl (1.19.7ubuntu1) ... Setting up gcc-9 (9.2.1-2ubuntu1) ... Setting up gcc-8 (8.3.0-21ubuntu1) ... Setting up gcc (4:9.1.0-1ubuntu4) ... Setting up dpkg-dev (1.19.7ubuntu1) ... Setting up g++-9 (9.2.1-2ubuntu1) ... Setting up g++ (4:9.1.0-1ubuntu4) ... Setting up g++-8 (8.3.0-21ubuntu1) ... Setting up build-essential (12.6ubuntu2) ... Processing triggers for systemd (240-6ubuntu9) ... Processing triggers for libc-bin (2.29-0ubuntu3) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17445636 ppc64el eoan-proposed -c chroot:build-PACKAGEBUILD-17445636 --arch=ppc64el --dist=eoan-proposed --nolog libncl_2.1.21+git20190531.feceb81-1.dsc Initiating build PACKAGEBUILD-17445636 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-159-generic #187-Ubuntu SMP Thu Aug 1 16:28:09 UTC 2019 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-004.buildd +==============================================================================+ | libncl 2.1.21+git20190531.feceb81-1 (ppc64el) 20 Aug 2019 17:15 | +==============================================================================+ Package: libncl Version: 2.1.21+git20190531.feceb81-1 Source Version: 2.1.21+git20190531.feceb81-1 Distribution: eoan-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/libncl-4GqdL8/libncl-2.1.21+git20190531.feceb81' with '<>' I: NOTICE: Log filtering will replace 'build/libncl-4GqdL8' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17445636/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libncl_2.1.21+git20190531.feceb81-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-GN8Bs7/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-GN8Bs7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GN8Bs7/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-GN8Bs7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GN8Bs7/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-GN8Bs7/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (262 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-GN8Bs7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13844 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), d-shlibs, python Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, python dpkg-deb: building package 'sbuild-build-depends-libncl-dummy' in '/<>/resolver-S7eVqB/apt_archive/sbuild-build-depends-libncl-dummy.deb'. Ign:1 copy:/<>/resolver-S7eVqB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-S7eVqB/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-S7eVqB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-S7eVqB/apt_archive ./ Sources [226 B] Get:5 copy:/<>/resolver-S7eVqB/apt_archive ./ Packages [545 B] Fetched 2890 B in 0s (188 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libncl build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal sbuild-build-depends-libncl-dummy 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After this operation, 92.5 MB of additional disk space will be used. 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Unpacking sbuild-build-depends-libncl-dummy (0.invalid.0) ... Setting up libexpat1:ppc64el (2.2.7-1) ... Setting up libpipeline1:ppc64el (1.5.1-2) ... Setting up mime-support (3.63ubuntu1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:ppc64el (2.61.2-2) ... No schema files found: doing nothing. Setting up libmagic1:ppc64el (1:5.37-5) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-5) ... Setting up libicu63:ppc64el (63.2-2) ... Setting up libpython2.7-stdlib:ppc64el (2.7.16-3) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up d-shlibs (0.86) ... Setting up libuchardet0:ppc64el (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up libelf1:ppc64el (0.176-1.1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-7ubuntu3) ... Setting up libfile-stripnondeterminism-perl (1.5.0-1) ... Setting up python2.7 (2.7.16-3) ... Setting up libtool (2.4.6-10) ... Setting up libpython2-stdlib:ppc64el (2.7.16-1) ... Setting up m4 (1.4.18-2) ... Setting up python2 (2.7.16-1) ... Setting up libpython-stdlib:ppc64el (2.7.16-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:ppc64el (0.6.13-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up python (2.7.16-1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-strip-nondeterminism (1.5.0-1) ... Setting up debhelper (12.4ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-libncl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-159-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.32.51.20190813-1ubuntu1 dpkg-dev_1.19.7ubuntu1 g++-8_8.3.0-21ubuntu1 g++-9_9.2.1-2ubuntu1 gcc-8_8.3.0-21ubuntu1 gcc-9_9.2.1-2ubuntu1 libc6-dev_2.29-0ubuntu3 libstdc++-8-dev_8.3.0-21ubuntu1 libstdc++-9-dev_9.2.1-2ubuntu1 libstdc++6_9.2.1-2ubuntu1 linux-libc-dev_5.2.0-13.14 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.3 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu4 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.32.51.20190813-1ubuntu1 binutils-common_2.32.51.20190813-1ubuntu1 binutils-powerpc64le-linux-gnu_2.32.51.20190813-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu1 build-essential_12.6ubuntu2 bzip2_1.0.6-9.2 ca-certificates_20190110 coreutils_8.30-3ubuntu1 cpp_4:9.1.0-1ubuntu4 cpp-8_8.3.0-21ubuntu1 cpp-9_9.2.1-2ubuntu1 d-shlibs_0.86 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.4ubuntu1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dmsetup_2:1.02.155-2ubuntu5 dpkg_1.19.7ubuntu1 dpkg-dev_1.19.7ubuntu1 dwz_0.13-1 e2fslibs_1.45.2-1ubuntu1 e2fsprogs_1.45.2-1ubuntu1 fakeroot_1.23-1 fdisk_2.34-0.1ubuntu1 file_1:5.37-5 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.1.0-1ubuntu4 g++-8_8.3.0-21ubuntu1 g++-9_9.2.1-2ubuntu1 gcc_4:9.1.0-1ubuntu4 gcc-8_8.3.0-21ubuntu1 gcc-8-base_8.3.0-21ubuntu1 gcc-9_9.2.1-2ubuntu1 gcc-9-base_9.2.1-2ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.10-0ubuntu2 hostname_3.21 init_1.57 init-system-helpers_1.57 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapparmor1_2.13.2-9ubuntu7 libapt-pkg5.0_1.8.0~alpha2ubuntu1 libapt-pkg5.90_1.9.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-2ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-2ubuntu1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2ubuntu1 libaudit1_1:2.8.5-2ubuntu1 libbinutils_2.32.51.20190813-1ubuntu1 libblkid1_2.34-0.1ubuntu1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.29-0ubuntu3 libc-dev-bin_2.29-0ubuntu3 libc6_2.29-0ubuntu3 libc6-dev_2.29-0ubuntu3 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_9.2.1-2ubuntu1 libcom-err2_1.45.2-1ubuntu1 libcomerr2_1.45.2-1ubuntu1 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.249ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu5 libdpkg-perl_1.19.7ubuntu1 libelf1_0.176-1.1 libexpat1_2.2.7-1 libext2fs2_1.45.2-1ubuntu1 libfakeroot_1.23-1 libfdisk1_2.34-0.1ubuntu1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.5.0-1 libgcc-8-dev_8.3.0-21ubuntu1 libgcc-9-dev_9.2.1-2ubuntu1 libgcc1_1:9.2.1-2ubuntu1 libgcrypt20_1.8.4-5ubuntu1 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.61.2-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.2.1-2ubuntu1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn11_1.33-2.2ubuntu2 libidn2-0_2.2.0-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libisl21_0.21-1 libitm1_9.2.1-2ubuntu1 libjson-c3_0.12.1-1.3 libjson-c4_0.13.1+dfsg-4 libkmod2_26-1ubuntu1 liblockfile-bin_1.15-1 liblockfile1_1.15-1 liblsan0_9.2.1-2ubuntu1 liblz4-1_1.9.1-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1ubuntu1 libncursesw6_6.1+20190803-1ubuntu1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpython-stdlib_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7-minimal_2.7.16-3 libpython2.7-stdlib_2.7.16-3 libquadmath0_9.2.1-2ubuntu1 libreadline7_7.0-5 libreadline8_8.0-2 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libslang2_2.3.2-4 libsmartcols1_2.34-0.1ubuntu1 libsqlite3-0_3.29.0-2 libss2_1.45.2-1ubuntu1 libssl1.1_1.1.1c-1ubuntu4 libstdc++-8-dev_8.3.0-21ubuntu1 libstdc++-9-dev_9.2.1-2ubuntu1 libstdc++6_9.2.1-2ubuntu1 libsub-override-perl_0.09-2 libsystemd0_240-6ubuntu9 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1ubuntu1 libtool_2.4.6-10 libtsan0_9.2.1-2ubuntu1 libubsan1_9.2.1-2ubuntu1 libuchardet0_0.0.6-3 libudev1_240-6ubuntu9 libunistring2_0.9.10-2 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.34-0.1ubuntu1 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.4.2+dfsg-1 linux-libc-dev_5.2.0-13.14 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu2 lsb-base_11.0.1ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17ubuntu3 mime-support_3.63ubuntu1 mount_2.34-0.1ubuntu1 multiarch-support_2.29-0ubuntu3 ncurses-base_6.1+20190803-1ubuntu1 ncurses-bin_6.1+20190803-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python_2.7.16-1 python-minimal_2.7.16-1 python2_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-3 python2.7-minimal_2.7.16-3 readline-common_8.0-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libncl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-6ubuntu9 systemd-sysv_240-6ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.95-5ubuntu2 tar_1.30+dfsg-6 tzdata_2019b-2 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Aug 20 13:14:24 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libncl_2.1.21+git20190531.feceb81-1.dsc dpkg-source: info: extracting libncl in libncl-2.1.21+git20190531.feceb81 dpkg-source: info: unpacking libncl_2.1.21+git20190531.feceb81.orig.tar.xz dpkg-source: info: unpacking libncl_2.1.21+git20190531.feceb81-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_rpath_issue.patch dpkg-source: info: applying set_soname_version.patch dpkg-source: info: applying spelling.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17445636 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17445636 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17445636 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libncl dpkg-buildpackage: info: source version 2.1.21+git20190531.feceb81-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_clean find . -name ".roundTripNCL*" -delete make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:28: installing 'config/compile' configure.ac:21: installing 'config/missing' example/basiccmdline/Makefile.am: installing 'config/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_auto_configure -- --with-constfuncs=yes ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-constfuncs=yes configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert powerpc64le-unknown-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc64le-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether C++ compiler works... yes checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for an ANSI C-conforming const... yes checking for inline... inline checking whether struct tm is in sys/time.h or time.h... time.h checking whether time.h and sys/time.h may both be included... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for alarm... yes checking for working mktime... yes checking for working strtod... yes checking for memmove... yes checking for strchr... yes checking for strtol... yes checking for python... /usr/bin/python checking python module: subprocess... yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating example/Makefile config.status: creating example/basiccmdline/Makefile config.status: creating example/check-taxo-nodes/Makefile config.status: creating example/compressor/Makefile config.status: creating example/find-unsupported-edges/Makefile config.status: creating example/gapcode/Makefile config.status: creating example/ot-subtree/Makefile config.status: creating example/ot-tree-inspect/Makefile config.status: creating example/nclsimplest/Makefile config.status: creating example/ncltest/Makefile config.status: creating example/normalizer/Makefile config.status: creating example/patristic/Makefile config.status: creating example/phylobaseinterface/Makefile config.status: creating example/polytomy-count/Makefile config.status: creating example/outdeg1count/Makefile config.status: creating example/splitsinfile/Makefile config.status: creating example/subsetter/Makefile config.status: creating example/translate/Makefile config.status: creating ncl/Makefile config.status: creating test/Makefile config.status: creating nclv2.1.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_auto_build -a make -j4 make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make all-recursive make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' Making all in ncl make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat 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"libncl.so.2.0.0" "libncl.so") libtool: link: ar cru .libs/libncl.a nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancesblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxablock.o nxstaxaassociationblock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libncl.a libtool: link: ( cd ".libs" && rm -f "libncl.la" && ln -s "../libncl.la" "libncl.la" ) make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' Making all in example make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making all in basiccmdline make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 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-DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o checktaxonnodes-checktaxonnodes.o `test -f 'checktaxonnodes.cpp' || echo './'`checktaxonnodes.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' Making all in compressor make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSCharacterCompressor-compressor.o `test -f 'compressor.cpp' || echo './'`compressor.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat 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g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DMULTIFILE_NEXUS_READER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSunion-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSnormalizer normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSnormalizer normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSunion NEXUSunion-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSunion NEXUSunion-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' Making all in ot-subtree make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o otsubtree-otsubtree.o `test -f 'otsubtree.cpp' || echo './'`otsubtree.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o otsubtree otsubtree-otsubtree.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otsubtree otsubtree-otsubtree.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' Making all in ot-tree-inspect make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o otTreeInspect-ot_tree_inspect.o `test -f 'ot_tree_inspect.cpp' || echo './'`ot_tree_inspect.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' Making all in outdeg1count make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o outdeg1count-outdeg1count.o `test -f 'outdeg1count.cpp' || echo './'`outdeg1count.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o outdeg1count outdeg1count-outdeg1count.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/outdeg1count outdeg1count-outdeg1count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' Making all in patristic make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o patristic.o patristic.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o patristicmat patristic.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/patristicmat patristic.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' Making all in phylobaseinterface make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLInterface.o NCLInterface.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' Making all in polytomy-count make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o polytomycount-polytomy_count.o `test -f 'polytomy_count.cpp' || echo './'`polytomy_count.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o polytomycount polytomycount-polytomy_count.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/polytomycount polytomycount-polytomy_count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' Making all in splitsinfile make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStosplits-splitsinfile.o `test -f 'splitsinfile.cpp' || echo './'`splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStosplits-splitsstructs.o `test -f 'splitsstructs.cpp' || echo './'`splitsstructs.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o splitsinfile.o splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o splitsstructs.o splitsstructs.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/libncl.la /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o majrule splitsinfile.o splitsstructs.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/.libs/libncl.so libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/majrule splitsinfile.o splitsstructs.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' Making all in subsetter make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSsubsetter-subsetter.o `test -f 'subsetter.cpp' || echo './'`subsetter.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' Making all in translate make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStranslate-translateNuc.o `test -f 'translateNuc.cpp' || echo './'`translateNuc.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making all in test make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' Making check in ncl make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' Making check in example make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making check in basiccmdline make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' Making check in check-taxo-nodes make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' Making check in compressor make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' Making check in find-unsupported-edges make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' Making check in gapcode make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' Making check in nclsimplest make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' Making check in ncltest make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' /usr/bin/python ../../test/roundTripNCLTest.py ../../example/ncltest/ncltest ../../test/OldValidIn ../../test/OldValidOut "/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest/ncltest" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/OldValidIn/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/ncltest/ncltest succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/OldValidIn/m.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest/ncltest" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/OldValidOut/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/ncltest/ncltest succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/OldValidOut/m.nex make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' Making check in normalizer make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/characters.nex ../../test/data "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/data/characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/data/characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/data/characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/data/characters.nex /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/sample.tre ../../test/data "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/data/sample.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/data/sample.tre "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/data/sample.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/data/sample.tre /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer//NEXUSnormalizer ../../test/NTSValidIn ../../test/NTSValidOut "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/nhxtree.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 1014) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 1053) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/nhxtree.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/nhxtree.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/nhxtree.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/primates.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/primates.nex ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/primates.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/primates.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/primates.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/primates.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/protein.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/protein.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/protein.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/protein.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/m.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/m.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/m.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/m.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/linktest.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/linktest.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 189) storing read block: TAXA Warning: Skipping command: blockid at line 27, column (approximately) 11 (file position 388) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS Warning: Skipping unknown LINK subcommand: characters at line 61, column (approximately) 38 (file position 1551) storing read block: TREES Warning: Skipping unknown LINK subcommand: characters at line 71, column (approximately) 38 (file position 1745) storing read block: TREES storing implied block: ASSUMPTIONS storing implied block: ASSUMPTIONS storing read block: ASSUMPTIONS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 90, column (approximately) 42 (file position 2360) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/linktest.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/linktest.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/linktest.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 168) storing read block: TAXA Warning: Skipping command: blockid at line 12, column (approximately) 13 (file position 341) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: TREES storing read block: TREES storing read block: SETS storing read block: SETS storing read block: SETS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 84, column (approximately) 20 (file position 2384) storing read block: SETS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/linktest.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/t.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/t.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/t.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/t.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/kim.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/kim.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/kim.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/kim.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/kim.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/kim.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/distances.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/distances.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/distances.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/distances.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/cynmix.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/cynmix.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/cynmix.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/cynmix.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/cynmix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/cynmix.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock-quotes.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock-quotes.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 7 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock-quotes.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock-quotes.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock-quotes.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock-quotes.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/bglobin.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/bglobin.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/bglobin.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/bglobin.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/bglobin.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-unix.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-unix.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-unix.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-unix.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/adh.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/adh.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/adh.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/adh.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/adh.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/adh.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-dos.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-dos.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-dos.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-dos.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/partitions.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/partitions.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/partitions.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/partitions.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/partitions.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/partitions.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/treeswithouttaxa.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/treeswithouttaxa.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 10 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/treeswithouttaxa.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/treeswithouttaxa.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/treeswithouttaxa.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/treeswithouttaxa.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/replicase.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/replicase.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/replicase.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/replicase.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/replicase.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/replicase.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 13 (file position 32) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mac.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mac.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mac.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mac.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/charsets.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/charsets.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/charsets.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/charsets.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/charsets.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/charsets.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-rake.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 929) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 968) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-rake.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-rake.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-rake.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/anolis.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/anolis.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/anolis.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/anolis.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/anolis.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/anolis.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/associates.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/associates.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/associates.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/associates.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mixed-line-endings.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mixed-line-endings.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mixed-line-endings.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mixed-line-endings.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/paup_characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/paup_characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/paup_characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 188) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/paup_characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/unaligned.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/unaligned.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/unaligned.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/unaligned.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/dzmissing_bug.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/dzmissing_bug.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/dzmissing_bug.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/dzmissing_bug.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/dzmissing_bug.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/dzmissing_bug.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/avian_ovomucoids.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/avian_ovomucoids.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/avian_ovomucoids.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/avian_ovomucoids.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/avian_ovomucoids.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/avian_ovomucoids.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/mdata.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/mdata.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/mdata.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/mdata.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/mdata.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/mdata.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/parens_intree.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/parens_intree.tre "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/parens_intree.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/parens_intree.tre /usr/bin/python ../../test/roundTripNCLTest.py -x ../../example/normalizer/NEXUSnormalizer ../../test/funkyValidIn ../../test/funkyValidOut "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidIn/choke.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidIn/choke.tre ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 5, column (approximately) 6 (file position 74) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidIn/choke.tre "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidOut/choke.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidOut/choke.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidOut/choke.tre /usr/bin/python ../../test/roundTripNCLTest.py -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalValidIn ../../test/ExternalValidOut "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylipinterleaved" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylipinterleaved_emboss.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylipinterleaved_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylipinterleaved_emboss.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylipinterleaved_emboss.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylipinterleaved_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylipinterleaved_emboss.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_brana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_brana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_brana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_brana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_brana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_brana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-fphyliptree" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/phyliptree_simple.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/phyliptree_simple.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/phyliptree_simple.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/phyliptree_simple.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/phyliptree_simple.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/phyliptree_simple.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylip_emboss.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylip_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylip_emboss.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylip_emboss.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylip_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylip_emboss.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-frelaxedphyliptree" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/relaxedphyliptree_q.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/relaxedphyliptree_q.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/relaxedphyliptree_q.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/relaxedphyliptree_q.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/relaxedphyliptree_q.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/relaxedphyliptree_q.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faafasta" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aafasta_twoprot.fas" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aafasta_twoprot.fas ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aafasta_twoprot.fas "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aafasta_twoprot.fas" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aafasta_twoprot.fas ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aafasta_twoprot.fas "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot.aln" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot.aln "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot.aln" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot.aln "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot_undec.aln" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot_undec.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot_undec.aln "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot_undec.aln" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot_undec.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot_undec.aln /usr/bin/python ../../test/roundTripNCLTest.py -i -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalInvalidIn "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy ] Executing Error: Illegal state code "q" found when reading site 2 for taxon grylioMVZ175945 at line 12, column (approximately) 28 (and file position 20065) "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalInvalidIn/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalInvalidIn/aarelaxedphylip_rana.phy ] Executing Error: Sequence longer than 1976 found for taxon temporariaDMH84R1. The character "o" was found, and will be ignored. If the file position of this error corresponds to sequences for the next taxon in the matrix, then that is an indication that the sequences for taxon temporariaDMH84R1 are too short. at line 3, column (approximately) 2 (and file position 2011) /usr/bin/python ../../test/roundTripNCLTest.py -a ../../example/normalizer/NEXUSnormalizer /sbuild-nonexistent/.ncl_round_triprc does not exist. Test stepped skipped. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' Making check in ot-subtree make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' Making check in ot-tree-inspect make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' Making check in outdeg1count make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' Making check in patristic make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' Making check in phylobaseinterface make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' Making check in polytomy-count make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' Making check in splitsinfile make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' Making check in subsetter make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' Making check in translate make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' /usr/bin/python ../../test/roundTripNCLTest.py -o ../../example/translate/NEXUStranslate ../../test/TranslateIn ../../test/TranslateOut "/<>/libncl-2.1.21+git20190531.feceb81/example/translate/NEXUStranslate" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobin.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/translate/NEXUStranslate succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobin.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/translate/NEXUStranslate" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobinoof.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobinoof.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: CODONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/translate/NEXUStranslate succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobinoof.nex make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making check in test make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libncl-2.1.21\+git20190531.feceb81/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' Making install in ncl make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libncl.la '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/libncl.so.2.0.0 /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.so.2.0.0 libtool: install: (cd /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so.2 || { rm -f libncl.so.2 && ln -s libncl.so.2.0.0 libncl.so.2; }; }) libtool: install: (cd /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so || { rm -f libncl.so && ln -s libncl.so.2.0.0 libncl.so; }; }) libtool: install: /usr/bin/install -c .libs/libncl.lai /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.la libtool: install: /usr/bin/install -c .libs/libncl.a /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.a libtool: install: chmod 644 /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.a libtool: install: ranlib /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.a libtool: warning: remember to run 'libtool --finish /usr/lib/powerpc64le-linux-gnu' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/include/ncl' /usr/bin/install -c -m 644 ncl.h nxsallocatematrix.h nxsassumptionsblock.h nxsblock.cpp nxsblock.h nxscharactersblock.h nxscdiscretematrix.h nxscxxdiscretematrix.h nxsdatablock.h nxsdefs.h nxsdiscretedatum.h nxsdistancedatum.h nxsdistancesblock.h nxsexception.h nxsmultiformat.h nxspublicblocks.h nxsreader.h nxssetreader.h nxsstring.h nxstaxablock.h nxstaxaassociationblock.h nxstoken.h nxstreesblock.h nxsunalignedblock.h nxsutilcopy.h '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/include/ncl' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' Making install in example make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making install in basiccmdline make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' Making install in check-taxo-nodes make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c checktaxonnodes '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/checktaxonnodes /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/checktaxonnodes make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' Making install in compressor make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' Making install in find-unsupported-edges make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c findunsupportededges '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/findunsupportededges /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/findunsupportededges make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' Making install in gapcode make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' Making install in nclsimplest make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' Making install in ncltest make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' Making install in normalizer make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c NEXUSnormalizer NEXUSvalidator NCLconverter '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSnormalizer /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/NEXUSnormalizer libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSvalidator /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/NEXUSvalidator libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/NCLconverter /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/NCLconverter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' Making install in ot-subtree make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otsubtree '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/otsubtree /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/otsubtree make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' Making install in ot-tree-inspect make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otTreeInspect '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/otTreeInspect /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/otTreeInspect make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' Making install in outdeg1count make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c outdeg1count '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/outdeg1count /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/outdeg1count make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' Making install in patristic make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' Making install in phylobaseinterface make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' Making install in polytomy-count make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' Making install in splitsinfile make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' Making install in subsetter make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' Making install in translate make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making install in test make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 nclv2.1.pc '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' debian/rules override_dh_install make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/ncl/*.h" usr/include/ncl \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/powerpc64le-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libncl.so Library package automatic movement utility set -e install -d -m 755 debian/libncl-dev/usr/lib/powerpc64le-linux-gnu install -d -m 755 debian/libncl2/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.a debian/libncl-dev/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.la debian/libncl-dev/usr/lib/powerpc64le-linux-gnu || true mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.so debian/libncl-dev/usr/lib/powerpc64le-linux-gnu mv /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.so.2 debian/libncl2/usr/lib/powerpc64le-linux-gnu mv /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.so.2.0.0 debian/libncl2/usr/lib/powerpc64le-linux-gnu PKGDEV=libncl-dev PKGSHL=libncl2 install -d -m 755 debian/libncl-dev/usr/include/ncl mv debian/tmp/usr/include/ncl/*.h debian/libncl-dev/usr/include/ncl install -d -m 755 debian/libncl-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libncl-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig rm -f debian/tmp/usr/include/ncl/nxsblock.cpp make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libncl-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libncl2 (in debian/libncl2); do_strip: , oemstrip: pkgstriptranslations: processing ncl-tools (in debian/ncl-tools); do_strip: , oemstrip: pkgstriptranslations: processing libncl-dev (in debian/libncl-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libncl2/DEBIAN/control, package libncl2, directory debian/libncl2 INFO: pkgstripfiles: waiting for lock (libncl2) ... pkgstripfiles: processing control file: debian/libncl-dev/DEBIAN/control, package libncl-dev, directory debian/libncl-dev INFO: pkgstripfiles: waiting for lock (libncl-dev) ... INFO: pkgstripfiles: waiting for lock (libncl2) ... INFO: pkgstripfiles: waiting for lock (libncl-dev) ... INFO: pkgstripfiles: waiting for lock (libncl2) ... INFO: pkgstripfiles: waiting for lock (libncl-dev) ... INFO: pkgstripfiles: waiting for lock (libncl2) ... INFO: pkgstripfiles: waiting for lock (libncl-dev) ... INFO: pkgstripfiles: waiting for lock (libncl2) ... INFO: pkgstripfiles: waiting for lock (libncl-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncl-tools/DEBIAN/control, package ncl-tools, directory debian/ncl-tools Searching for duplicated docs in dependency libncl2... symlinking changelog.Debian.gz in ncl-tools to file in libncl2 INFO: pkgstripfiles: waiting for lock (libncl2) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncl-tools ... pkgstripfiles: No PNG files. INFO: pkgstripfiles: waiting for lock (libncl-dev) ... dpkg-deb: building package 'ncl-tools' in '../ncl-tools_2.1.21+git20190531.feceb81-1_ppc64el.deb'. INFO: pkgstriptranslations version 144 pkgstriptranslations: processing ncl-tools-dbgsym (in debian/.debhelper/ncl-tools/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libncl-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libncl2 ... pkgstripfiles: No PNG files. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: building package 'libncl2' in '../libncl2_2.1.21+git20190531.feceb81-1_ppc64el.deb'. pkgstripfiles: processing control file: debian/.debhelper/ncl-tools/dbgsym-root/DEBIAN/control, package ncl-tools-dbgsym, directory debian/.debhelper/ncl-tools/dbgsym-root dpkg-deb: building package 'ncl-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-ncl-tools/ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.deb'. INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libncl2-dbgsym (in debian/.debhelper/libncl2/dbgsym-root); do_strip: , oemstrip: Searching for duplicated docs in dependency libncl2... symlinking changelog.Debian.gz in libncl-dev to file in libncl2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libncl-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libncl-dev' in '../libncl-dev_2.1.21+git20190531.feceb81-1_ppc64el.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libncl2/dbgsym-root/DEBIAN/control, package libncl2-dbgsym, directory debian/.debhelper/libncl2/dbgsym-root dpkg-deb: building package 'libncl2-dbgsym' in 'debian/.debhelper/scratch-space/build-libncl2/libncl2-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.deb'. Renaming ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.deb to ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.ddeb Renaming libncl2-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.deb to libncl2-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libncl_2.1.21+git20190531.feceb81-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190820-1719 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libncl_2.1.21+git20190531.feceb81-1_ppc64el.changes: ---------------------------------------------------- Format: 1.8 Date: Tue, 20 Aug 2019 15:05:39 +0200 Source: libncl Binary: libncl-dev libncl2 ncl-tools Architecture: ppc64el Version: 2.1.21+git20190531.feceb81-1 Distribution: eoan-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libncl-dev - NEXUS Class Library (static lib and header files) libncl2 - NEXUS Class Library ncl-tools - tools to deal with NEXUS files Closes: 925752 Changes: libncl (2.1.21+git20190531.feceb81-1) unstable; urgency=medium . * Fix symbols file Closes: #925752 * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * Install pkgconfig file Checksums-Sha1: 296ea61f7b18bd48394a0e7244438c28c1d68a65 567668 libncl-dev_2.1.21+git20190531.feceb81-1_ppc64el.deb 36889d6a34ddf47e9cb7d1c5309607bfcce2b20b 8610928 libncl2-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.ddeb 9b4a46b7ac17c1bb9e7540a141fd7c797fe8b79f 380944 libncl2_2.1.21+git20190531.feceb81-1_ppc64el.deb f74c437b00e2155a3367ce843c9b1d16cac3af79 7141 libncl_2.1.21+git20190531.feceb81-1_ppc64el.buildinfo bbf40c157e7f0a569760c14ba99ac646d97e7073 4916164 ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.ddeb 3608625c7cc28757e17cecd74bd0559ec2118ef2 189164 ncl-tools_2.1.21+git20190531.feceb81-1_ppc64el.deb Checksums-Sha256: 87b49fa2fb22b93792127c5a8870f25794ffcf2a9d5c69256d670d7c74ea03cb 567668 libncl-dev_2.1.21+git20190531.feceb81-1_ppc64el.deb f38619896b686f9dcae3443239b82f1894e587f53d0a795cccfdeb13d9afb56e 8610928 libncl2-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.ddeb e17924d6336ee42174e63b55e9e9f5800396a5e339a842b5bd6546ee611333c7 380944 libncl2_2.1.21+git20190531.feceb81-1_ppc64el.deb 332713104f822093b6faf7a751576b13ad5e0a8331ea52fdf4ec49be54364eca 7141 libncl_2.1.21+git20190531.feceb81-1_ppc64el.buildinfo a0f88b59dfba136804643f65c791154c2207de5fb3aca990621e24c9ec69d292 4916164 ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.ddeb 673fa2b49754f4e26acbc09a12f5ae6b057c91788baaa3e41da8776e4a1cbe97 189164 ncl-tools_2.1.21+git20190531.feceb81-1_ppc64el.deb Files: 496e0b04bea4abd935fb2d3716516c69 567668 libdevel optional libncl-dev_2.1.21+git20190531.feceb81-1_ppc64el.deb b661fd2691f6d2888732a65afad40265 8610928 debug optional libncl2-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.ddeb bded9d7b33b72bdb62deb50192885859 380944 libs optional libncl2_2.1.21+git20190531.feceb81-1_ppc64el.deb 1466f0b0297e711eaac1798538925dac 7141 science optional libncl_2.1.21+git20190531.feceb81-1_ppc64el.buildinfo b643f233bcefeae64adf1aeeb05e7c03 4916164 debug optional ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_ppc64el.ddeb 033000d5bced8be90c43d051a49e6206 189164 science optional ncl-tools_2.1.21+git20190531.feceb81-1_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libncl-dev_2.1.21+git20190531.feceb81-1_ppc64el.deb --------------------------------------------------- new debian package, version 2.0. size 567668 bytes: control archive=1536 bytes. 787 bytes, 20 lines control 1899 bytes, 28 lines md5sums Package: libncl-dev Source: libncl Version: 2.1.21+git20190531.feceb81-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4463 Depends: libncl2 (= 2.1.21+git20190531.feceb81-1) Section: libdevel Priority: optional Homepage: https://github.com/mtholder/ncl Description: NEXUS Class Library (static lib and header files) The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. . This package contains the static library and header files of the NEXUS library. drwxr-xr-x root/root 0 2019-08-20 13:05 ./ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/include/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/include/ncl/ -rw-r--r-- root/root 2384 2019-08-20 13:05 ./usr/include/ncl/ncl.h -rw-r--r-- root/root 5928 2019-08-20 13:05 ./usr/include/ncl/nxsallocatematrix.h -rw-r--r-- root/root 14934 2019-08-20 13:05 ./usr/include/ncl/nxsassumptionsblock.h -rw-r--r-- root/root 15451 2019-08-20 13:05 ./usr/include/ncl/nxsblock.h -rw-r--r-- root/root 3814 2019-08-20 13:05 ./usr/include/ncl/nxscdiscretematrix.h -rw-r--r-- root/root 77971 2019-08-20 13:05 ./usr/include/ncl/nxscharactersblock.h -rw-r--r-- root/root 11249 2019-08-20 13:05 ./usr/include/ncl/nxscxxdiscretematrix.h -rw-r--r-- root/root 2145 2019-08-20 13:05 ./usr/include/ncl/nxsdatablock.h -rw-r--r-- root/root 4059 2019-08-20 13:05 ./usr/include/ncl/nxsdefs.h -rw-r--r-- root/root 2098 2019-08-20 13:05 ./usr/include/ncl/nxsdiscretedatum.h -rw-r--r-- root/root 1328 2019-08-20 13:05 ./usr/include/ncl/nxsdistancedatum.h -rw-r--r-- root/root 7403 2019-08-20 13:05 ./usr/include/ncl/nxsdistancesblock.h -rw-r--r-- root/root 3060 2019-08-20 13:05 ./usr/include/ncl/nxsexception.h -rw-r--r-- root/root 10912 2019-08-20 13:05 ./usr/include/ncl/nxsmultiformat.h -rw-r--r-- root/root 30636 2019-08-20 13:05 ./usr/include/ncl/nxspublicblocks.h -rw-r--r-- root/root 26955 2019-08-20 13:05 ./usr/include/ncl/nxsreader.h -rw-r--r-- root/root 4284 2019-08-20 13:05 ./usr/include/ncl/nxssetreader.h -rw-r--r-- root/root 21693 2019-08-20 13:05 ./usr/include/ncl/nxsstring.h -rw-r--r-- root/root 4646 2019-08-20 13:05 ./usr/include/ncl/nxstaxaassociationblock.h -rw-r--r-- root/root 16886 2019-08-20 13:05 ./usr/include/ncl/nxstaxablock.h -rw-r--r-- root/root 31363 2019-08-20 13:05 ./usr/include/ncl/nxstoken.h -rw-r--r-- root/root 35765 2019-08-20 13:05 ./usr/include/ncl/nxstreesblock.h -rw-r--r-- root/root 10644 2019-08-20 13:05 ./usr/include/ncl/nxsunalignedblock.h -rw-r--r-- root/root 9167 2019-08-20 13:05 ./usr/include/ncl/nxsutilcopy.h drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 4185144 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/libncl.a -rw-r--r-- root/root 941 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/libncl.la lrwxrwxrwx root/root 0 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/libncl.so -> libncl.so.2.0.0 drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/ -rw-r--r-- root/root 310 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/nclv2.1.pc drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/libncl-dev/ lrwxrwxrwx root/root 0 2019-08-20 13:05 ./usr/share/doc/libncl-dev/changelog.Debian.gz -> ../libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2019-08-20 13:05 ./usr/share/doc/libncl-dev/copyright libncl2_2.1.21+git20190531.feceb81-1_ppc64el.deb ------------------------------------------------ new debian package, version 2.0. size 380944 bytes: control archive=952 bytes. 732 bytes, 19 lines control 222 bytes, 3 lines md5sums 49 bytes, 1 lines shlibs 72 bytes, 2 lines triggers Package: libncl2 Source: libncl Version: 2.1.21+git20190531.feceb81-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1429 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 9) Section: libs Priority: optional Homepage: https://github.com/mtholder/ncl Description: NEXUS Class Library The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. . This package contains the dynamic NEXUS library. drwxr-xr-x root/root 0 2019-08-20 13:05 ./ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/libncl.so.2 -> libncl.so.2.0.0 -rw-r--r-- root/root 1448608 2019-08-20 13:05 ./usr/lib/powerpc64le-linux-gnu/libncl.so.2.0.0 drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/libncl2/ -rw-r--r-- root/root 752 2019-08-20 13:05 ./usr/share/doc/libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2019-08-20 13:05 ./usr/share/doc/libncl2/copyright ncl-tools_2.1.21+git20190531.feceb81-1_ppc64el.deb -------------------------------------------------- new debian package, version 2.0. size 189164 bytes: control archive=1108 bytes. 738 bytes, 17 lines control 740 bytes, 12 lines md5sums Package: ncl-tools Source: libncl Version: 2.1.21+git20190531.feceb81-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1322 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libncl2 (>= 2.1.21+git20190531.feceb81), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/mtholder/ncl Description: tools to deal with NEXUS files The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. drwxr-xr-x root/root 0 2019-08-20 13:05 ./ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/bin/ -rwxr-xr-x root/root 330200 2019-08-20 13:05 ./usr/bin/NCLconverter -rwxr-xr-x root/root 133424 2019-08-20 13:05 ./usr/bin/NEXUSnormalizer -rwxr-xr-x root/root 133424 2019-08-20 13:05 ./usr/bin/NEXUSvalidator -rwxr-xr-x root/root 133400 2019-08-20 13:05 ./usr/bin/checktaxonnodes -rwxr-xr-x root/root 198944 2019-08-20 13:05 ./usr/bin/findunsupportededges -rwxr-xr-x root/root 133416 2019-08-20 13:05 ./usr/bin/otTreeInspect -rwxr-xr-x root/root 133400 2019-08-20 13:05 ./usr/bin/otsubtree -rwxr-xr-x root/root 133408 2019-08-20 13:05 ./usr/bin/outdeg1count drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/ncl-tools/ lrwxrwxrwx root/root 0 2019-08-20 13:05 ./usr/share/doc/ncl-tools/changelog.Debian.gz -> ../libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2019-08-20 13:05 ./usr/share/doc/ncl-tools/copyright drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/man/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/man/man1/ -rw-r--r-- root/root 1674 2019-08-20 13:05 ./usr/share/man/man1/NCLconverter.1.gz -rw-r--r-- root/root 1094 2019-08-20 13:05 ./usr/share/man/man1/NEXUSnormalizer.1.gz -rw-r--r-- root/root 1054 2019-08-20 13:05 ./usr/share/man/man1/NEXUSvalidator.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 680500 Build-Time: 210 Distribution: eoan-proposed Host Architecture: ppc64el Install-Time: 10 Job: libncl_2.1.21+git20190531.feceb81-1.dsc Machine Architecture: ppc64el Package: libncl Package-Time: 222 Source-Version: 2.1.21+git20190531.feceb81-1 Space: 680500 Status: successful Version: 2.1.21+git20190531.feceb81-1 -------------------------------------------------------------------------------- Finished at 20190820-1719 Build needed 00:03:42, 680500k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17445636 Scanning for processes to kill in build PACKAGEBUILD-17445636