https://launchpad.net/ubuntu/+source/libpwiz/3.0.10827-4build1/+build/15138123 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-004 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 17 Jul 16:37:52 ntpdate[1869]: adjust time server 10.211.37.1 offset 0.010910 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15138123 /home/buildd/filecache-default/b7d07d6b68ae68badf26a018a3a0291d50e41e42 Creating target for build PACKAGEBUILD-15138123 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15138123 Starting target for build PACKAGEBUILD-15138123 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15138123 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15138123 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15138123 Updating target for build PACKAGEBUILD-15138123 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 Packages [1094 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [524 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe amd64 Packages [8652 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5019 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 Packages [95.7 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [45.3 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 Packages [280 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [155 kB] Fetched 16.3 MB in 5s (3463 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libpng16-16 libquadmath0 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 106 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 84.6 MB of archives. After this operation, 115 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-files amd64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo6 amd64 6.1+20180210-4ubuntu1 [84.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 debianutils amd64 4.8.6 [85.6 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 bash amd64 4.4.18-2ubuntu2 [614 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdutils amd64 1:2.32-0.1ubuntu1 [60.4 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 tar amd64 1.30+dfsg-2 [240 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg amd64 1.19.0.5ubuntu3 [1140 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libext2fs2 amd64 1.44.3-1 [158 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fsprogs amd64 1.44.3-1 [396 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-bin amd64 6.1+20180210-4ubuntu1 [163 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main amd64 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main amd64 libperl5.26 amd64 5.26.2-6 [3545 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main amd64 perl amd64 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main amd64 perl-base amd64 5.26.2-6 [1391 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 sed amd64 4.5-1 [184 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 libuuid1 amd64 2.32-0.1ubuntu1 [19.9 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 libblkid1 amd64 2.32-0.1ubuntu1 [128 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfdisk1 amd64 2.32-0.1ubuntu1 [167 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw6 amd64 6.1+20180210-4ubuntu1 [130 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libselinux1 amd64 2.8-1build1 [68.5 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmount1 amd64 2.32-0.1ubuntu1 [139 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsmartcols1 amd64 2.32-0.1ubuntu1 [86.0 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 fdisk amd64 2.32-0.1ubuntu1 [109 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 util-linux amd64 2.32-0.1ubuntu1 [916 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-passwd amd64 3.5.45 [47.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libquadmath0 amd64 8.1.0-10ubuntu1 [133 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libitm1 amd64 8.1.0-10ubuntu1 [28.1 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-8-base amd64 8.1.0-10ubuntu1 [19.0 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgcc1 amd64 1:8.1.0-10ubuntu1 [40.7 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libmpx2 amd64 8.1.0-10ubuntu1 [11.7 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 liblsan0 amd64 8.1.0-10ubuntu1 [132 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libtsan0 amd64 8.1.0-10ubuntu1 [288 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libcc1-0 amd64 8.1.0-10ubuntu1 [39.6 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libatomic1 amd64 8.1.0-10ubuntu1 [9056 B] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgomp1 amd64 8.1.0-10ubuntu1 [76.4 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libstdc++6 amd64 8.1.0-10ubuntu1 [398 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblz4-1 amd64 1.8.2-1ubuntu1 [86.1 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libudev1 amd64 238-5ubuntu2 [56.1 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main amd64 libapt-pkg5.0 amd64 1.7.0~alpha2 [803 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 debconf all 1.5.67 [124 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 adduser all 3.117ubuntu1 [163 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgpg-error0 amd64 1.32-1 [56.1 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcrypt20 amd64 1.8.3-1ubuntu1 [419 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 gpgv amd64 2.2.8-1ubuntu1 [197 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 libseccomp2 amd64 2.3.3-3ubuntu1 [38.9 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 apt amd64 1.7.0~alpha2 [1172 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libapparmor1 amd64 2.12-4ubuntu6 [31.3 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main amd64 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcap-ng0 amd64 0.7.9-1 [11.3 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu2 [38.6 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 libargon2-1 amd64 0~20171227-0.1 [20.2 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libcryptsetup12 amd64 2:2.0.3-6ubuntu1 [139 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkmod2 amd64 25-1ubuntu1 [41.6 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 mount amd64 2.32-0.1ubuntu1 [104 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses6 amd64 6.1+20180210-4ubuntu1 [101 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 libprocps7 amd64 2:3.3.15-2ubuntu1 [32.6 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main amd64 procps amd64 2:3.3.15-2ubuntu1 [231 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd amd64 238-5ubuntu2 [2930 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsystemd0 amd64 238-5ubuntu2 [208 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd-sysv amd64 238-5ubuntu2 [13.7 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcom-err2 amd64 1.44.3-1 [9184 B] Get:63 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsepol1 amd64 2.8-1 [252 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsemanage-common all 2.8-1build1 [7000 B] Get:65 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsemanage1 amd64 2.8-1build1 [85.3 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libss2 amd64 1.44.3-1 [11.1 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgmp10 amd64 2:6.1.2+dfsg-3 [240 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main amd64 libp11-kit0 amd64 0.23.12-2 [184 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtasn1-6 amd64 4.13-3 [36.1 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses5 amd64 6.1+20180210-4ubuntu1 [95.2 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw5 amd64 6.1+20180210-4ubuntu1 [117 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo5 amd64 6.1+20180210-4ubuntu1 [79.3 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 libargon2-0 amd64 0~20171227-0.1 [4532 B] Get:74 http://ftpmaster.internal/ubuntu cosmic/main amd64 readline-common all 7.0-5 [52.2 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main amd64 libreadline7 amd64 7.0-5 [123 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 libslang2 amd64 2.3.2-1ubuntu1 [425 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsqlite3-0 amd64 3.24.0-1 [506 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main amd64 libssl1.1 amd64 1.1.0g-2ubuntu5 [1129 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main amd64 openssl amd64 1.1.0g-2ubuntu5 [531 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main amd64 tzdata all 2018e-1 [188 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libpng16-16 amd64 1.6.34-2 [176 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.31-1ubuntu1 [1849 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 binutils-common amd64 2.31-1ubuntu1 [194 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 binutils amd64 2.31-1ubuntu1 [3388 B] Get:85 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libbinutils amd64 2.31-1ubuntu1 [481 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 cpp-8 amd64 8.1.0-10ubuntu1 [7209 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 cpp amd64 4:8.1.0-2ubuntu0.3 [27.6 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libasan5 amd64 8.1.0-10ubuntu1 [365 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libubsan1 amd64 8.1.0-10ubuntu1 [121 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgcc-8-dev amd64 8.1.0-10ubuntu1 [2305 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-8 amd64 8.1.0-10ubuntu1 [7977 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc amd64 4:8.1.0-2ubuntu0.3 [5196 B] Get:93 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libstdc++-8-dev amd64 8.1.0-10ubuntu1 [1534 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 g++-8 amd64 8.1.0-10ubuntu1 [8098 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 g++ amd64 4:8.1.0-2ubuntu0.3 [1584 B] Get:96 http://ftpmaster.internal/ubuntu cosmic/main amd64 make amd64 4.2.1-1.1 [162 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main amd64 build-essential amd64 12.5ubuntu2 [4732 B] Get:100 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libasan4 amd64 7.3.0-25ubuntu1 [358 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libubsan0 amd64 7.3.0-25ubuntu1 [126 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libcilkrts5 amd64 7.3.0-25ubuntu1 [42.5 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 g++-7 amd64 7.3.0-25ubuntu1 [7573 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-7 amd64 7.3.0-25ubuntu1 [7455 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libstdc++-7-dev amd64 7.3.0-25ubuntu1 [1464 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgcc-7-dev amd64 7.3.0-25ubuntu1 [2377 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 cpp-7 amd64 7.3.0-25ubuntu1 [6737 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-7-base amd64 7.3.0-25ubuntu1 [19.0 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fslibs amd64 1.44.3-1 [2704 B] Get:110 http://ftpmaster.internal/ubuntu cosmic/main amd64 pinentry-curses amd64 1.1.0-1build2 [35.9 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnpth0 amd64 1.5-4 [7708 B] Get:112 http://ftpmaster.internal/ubuntu cosmic/main amd64 gpg amd64 2.2.8-1ubuntu1 [470 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main amd64 gpgconf amd64 2.2.8-1ubuntu1 [122 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main amd64 gpg-agent amd64 2.2.8-1ubuntu1 [228 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcomerr2 amd64 1.44.3-1 [2704 B] Get:116 http://ftpmaster.internal/ubuntu cosmic/main amd64 libusb-0.1-4 amd64 2:0.1.12-32 [17.4 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 linux-libc-dev amd64 4.17.0-5.6 [1003 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main amd64 pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.6 MB in 1s (56.6 MB/s) (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_amd64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_amd64.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_amd64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_amd64.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_amd64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.3-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.3-1) over (1.44.1-1) ... Setting up libext2fs2:amd64 (1.44.3-1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.3-1_amd64.deb ... Unpacking e2fsprogs (1.44.3-1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.3-1) ... (Reading database ... 12648 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking ncurses-bin (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-4ubuntu1) ... (Reading database ... 12648 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-6_amd64.deb ... Unpacking perl (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-6_all.deb ... Unpacking perl-modules-5.26 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-6_amd64.deb ... 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Setting up libtsan0:amd64 (8.1.0-10ubuntu1) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:amd64 (4.17.0-5.6) ... Setting up perl-modules-5.26 (5.26.2-6) ... Setting up liblsan0:amd64 (8.1.0-10ubuntu1) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up gcc-7-base:amd64 (7.3.0-25ubuntu1) ... Setting up binutils-common:amd64 (2.31-1ubuntu1) ... Setting up libmpx2:amd64 (8.1.0-10ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:amd64 (5.26.2-6) ... Setting up libssl1.1:amd64 (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:amd64 (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libcomerr2:amd64 (1.44.3-1) ... Setting up libslang2:amd64 (2.3.2-1ubuntu1) ... Setting up libasan5:amd64 (8.1.0-10ubuntu1) ... Setting up libusb-0.1-4:amd64 (2:0.1.12-32) ... Setting up libitm1:amd64 (8.1.0-10ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... 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Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15138123 amd64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15138123 --arch=amd64 --dist=cosmic-proposed --nolog -A libpwiz_3.0.10827-4build1.dsc Initiating build PACKAGEBUILD-15138123 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-004.buildd +==============================================================================+ | libpwiz 3.0.10827-4build1 (amd64) 17 Jul 2018 16:38 | +==============================================================================+ Package: libpwiz Version: 3.0.10827-4build1 Source Version: 3.0.10827-4build1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/libpwiz-d22bHf/libpwiz-3.0.10827' with '<>' I: NOTICE: Log filtering will replace 'build/libpwiz-d22bHf' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15138123/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libpwiz_3.0.10827-4build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-qPNIwW/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-qPNIwW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-qPNIwW/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-qPNIwW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-qPNIwW/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-qPNIwW/apt_archive ./ Packages [526 B] Fetched 2859 B in 213503982334601d 7h 0min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-qPNIwW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 213503982334601d 7h 0min 15s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13727 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.56.0), libboost-date-time-dev (>= 1.56.0), libboost-iostreams-dev (>= 1.56.0), libboost-regex-dev (>= 1.56.0), libboost-filesystem-dev (>= 1.56.0), libboost-thread-dev (>= 1.56.0), libboost-system-dev (>= 1.56.0), libboost-chrono-dev (>= 1.56.0), libboost-dev (>= 1.56.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev Filtered Build-Depends: debhelper (>= 9), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.56.0), libboost-date-time-dev (>= 1.56.0), libboost-iostreams-dev (>= 1.56.0), libboost-regex-dev (>= 1.56.0), libboost-filesystem-dev (>= 1.56.0), libboost-thread-dev (>= 1.56.0), libboost-system-dev (>= 1.56.0), libboost-chrono-dev (>= 1.56.0), libboost-dev (>= 1.56.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev dpkg-deb: building package 'sbuild-build-depends-libpwiz-dummy' in '/<>/resolver-nvNg1Y/apt_archive/sbuild-build-depends-libpwiz-dummy.deb'. Ign:1 copy:/<>/resolver-nvNg1Y/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nvNg1Y/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-nvNg1Y/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nvNg1Y/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-nvNg1Y/apt_archive ./ Packages [685 B] Fetched 3166 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libpwiz build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen dwz file fontconfig-config fonts-dejavu-core gettext gettext-base gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.67-dev libboost-atomic1.67.0 libboost-chrono-dev libboost-chrono1.67-dev libboost-chrono1.67.0 libboost-date-time-dev libboost-date-time1.67-dev libboost-date-time1.67.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.67-dev libboost-filesystem1.67.0 libboost-iostreams-dev libboost-iostreams1.67-dev libboost-iostreams1.67.0 libboost-program-options-dev libboost-program-options1.67-dev libboost-program-options1.67.0 libboost-regex-dev libboost-regex1.67-dev libboost-regex1.67.0 libboost-serialization1.67-dev libboost-serialization1.67.0 libboost-system-dev libboost-system1.67-dev libboost-system1.67.0 libboost-thread-dev libboost-thread1.67-dev libboost-thread1.67.0 libboost-tools-dev libboost1.67-dev libboost1.67-tools-dev libbsd0 libclang1-6.0 libcroco3 libedit2 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd-dev libgd3 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libllvm6.0 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libosp5 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpng-dev libpthread-stubs0-dev libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsm-dev libsm6 libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtool libvpx-dev libvpx5 libwebp6 libx11-6 libx11-data libx11-dev libxapian30 libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libxt-dev libxt6 m4 man-db mime-support opensp pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal sgml-base sgml-data ucf x11-common x11proto-core-dev x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make docbook-defguide docbook-dsssl docbook-xml psgml doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.67-doc libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-test1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libmpfrc++-dev libntl-dev xsltproc docbook-xsl default-jdk fop libeigen3-doc libmrpt-dev libfftw3-doc libgd-tools libglib2.0-doc libgraphite2-utils libice-doc icu-doc liblzma-doc libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libxcb-doc libxt-doc m4-doc apparmor less www-browser doc-base libmail-box-perl python3-doc python3-tk python3-venv python3.6-venv python3.6-doc binfmt-support sgml-base-doc perlsgml w3-recs libxml2-utils Recommended packages: curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs javascript-common libpng-tools libltdl-dev libx11-doc libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen dwz file fontconfig-config fonts-dejavu-core gettext gettext-base gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.67-dev libboost-atomic1.67.0 libboost-chrono-dev libboost-chrono1.67-dev libboost-chrono1.67.0 libboost-date-time-dev libboost-date-time1.67-dev libboost-date-time1.67.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.67-dev libboost-filesystem1.67.0 libboost-iostreams-dev libboost-iostreams1.67-dev libboost-iostreams1.67.0 libboost-program-options-dev libboost-program-options1.67-dev libboost-program-options1.67.0 libboost-regex-dev libboost-regex1.67-dev libboost-regex1.67.0 libboost-serialization1.67-dev libboost-serialization1.67.0 libboost-system-dev libboost-system1.67-dev libboost-system1.67.0 libboost-thread-dev libboost-thread1.67-dev libboost-thread1.67.0 libboost-tools-dev libboost1.67-dev libboost1.67-tools-dev libbsd0 libclang1-6.0 libcroco3 libedit2 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd-dev libgd3 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libllvm6.0 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libosp5 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpng-dev libpthread-stubs0-dev libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsm-dev libsm6 libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtool libvpx-dev libvpx5 libwebp6 libx11-6 libx11-data libx11-dev libxapian30 libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libxt-dev libxt6 m4 man-db mime-support opensp pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-libpwiz-dummy sgml-base sgml-data ucf x11-common x11proto-core-dev x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. Need to get 93.2 MB of archives. After this operation, 523 MB of additional disk space will be used. Get:1 copy:/<>/resolver-nvNg1Y/apt_archive ./ sbuild-build-depends-libpwiz-dummy 0.invalid.0 [1012 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.6-minimal amd64 3.6.6-1 [531 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 libexpat1 amd64 2.2.5-3 [80.2 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.6-minimal amd64 3.6.6-1 [1607 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 python3-minimal amd64 3.6.6-1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmpdec2 amd64 2.4.2-2 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.6-stdlib amd64 3.6.6-1 [1708 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.6 amd64 3.6.6-1 [190 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libpython3-stdlib amd64 3.6.6-1 [7144 B] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 python3 amd64 3.6.6-1 [33.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:13 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbsd0 amd64 0.9.1-1 [44.6 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 groff-base amd64 1.22.3-10 [1153 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 man-db amd64 2.8.3-2 [1019 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg-turbo8 amd64 1.5.2-0ubuntu6 [110 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main amd64 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main amd64 libice6 amd64 2:1.0.9-2 [40.2 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 sgml-base all 1.29 [12.3 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic-mgc amd64 1:5.33-3 [192 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic1 amd64 1:5.33-3 [69.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 file amd64 1:5.33-3 [22.9 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglib2.0-0 amd64 2.56.1-2ubuntu1 [1167 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgirepository-1.0-1 amd64 1.56.1-1 [82.0 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 gir1.2-glib-2.0 amd64 1.56.1-1 [131 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 libelf1 amd64 0.170-0.5 [44.1 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglib2.0-data all 2.56.1-2ubuntu1 [4220 B] Get:31 http://ftpmaster.internal/ubuntu cosmic/main amd64 libicu60 amd64 60.2-6ubuntu1 [8055 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-7build1 [664 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main amd64 ucf all 3.0038 [50.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext-base amd64 0.19.8.1-6build1 [50.0 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main amd64 libedit2 amd64 3.1-20180525-1 [78.5 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxdmcp6 amd64 1:1.1.2-3 [10.7 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb1 amd64 1.13-1 [45.6 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libx11-data all 2:1.6.5-1 [113 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libx11-6 amd64 2:1.6.5-1 [570 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 autoconf all 2.69-11 [322 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main amd64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 autopoint all 0.19.8.1-6build1 [412 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/universe amd64 chrpath amd64 0.16-2 [13.2 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libtool all 2.4.6-2.1build1 [196 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-autoreconf all 19 [16.1 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main amd64 libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:53 http://ftpmaster.internal/ubuntu cosmic/main amd64 dwz amd64 0.12-2 [77.7 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext amd64 0.19.8.1-6build1 [895 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 po-debconf all 1.0.20 [232 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main amd64 debhelper all 11.3.2ubuntu1 [883 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main amd64 xml-core all 0.18 [21.3 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/universe amd64 sgml-data all 2.0.11 [171 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/universe amd64 docbook all 4.5-6 [122 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libosp5 amd64 1.5.2-13ubuntu2 [584 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/universe amd64 opensp amd64 1.5.2-13ubuntu2 [143 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/universe amd64 docbook-to-man amd64 1:2.0.0-42 [74.1 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main amd64 libllvm6.0 amd64 1:6.0.1-2ubuntu1 [14.8 MB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libclang1-6.0 amd64 1:6.0.1-2ubuntu1 [7067 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxapian30 amd64 1.4.6-2 [635 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main amd64 doxygen amd64 1.8.13-10 [3880 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 fontconfig-config all 2.12.6-0ubuntu2 [55.8 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfreetype6 amd64 2.8.1-2ubuntu2 [335 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgraphite2-3 amd64 1.3.11-2 [78.7 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 libharfbuzz0b amd64 1.8.3-1 [256 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main amd64 gir1.2-harfbuzz-0.0 amd64 1.8.3-1 [19.2 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main amd64 icu-devtools amd64 60.2-6ubuntu1 [181 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost1.67-dev amd64 1.67.0-0ubuntu1 [8364 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-atomic1.67.0 amd64 1.67.0-0ubuntu1 [201 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-atomic1.67-dev amd64 1.67.0-0ubuntu1 [199 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-system1.67.0 amd64 1.67.0-0ubuntu1 [205 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-chrono1.67.0 amd64 1.67.0-0ubuntu1 [207 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-chrono1.67-dev amd64 1.67.0-0ubuntu1 [209 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libboost-chrono-dev amd64 1.67.0.0ubuntu1 [3548 B] Get:83 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-date-time1.67.0 amd64 1.67.0-0ubuntu1 [214 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-serialization1.67.0 amd64 1.67.0-0ubuntu1 [291 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-serialization1.67-dev amd64 1.67.0-0ubuntu1 [330 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-date-time1.67-dev amd64 1.67.0-0ubuntu1 [221 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libboost-date-time-dev amd64 1.67.0.0ubuntu1 [2932 B] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libboost-dev amd64 1.67.0.0ubuntu1 [3140 B] Get:89 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-filesystem1.67.0 amd64 1.67.0-0ubuntu1 [234 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-system1.67-dev amd64 1.67.0-0ubuntu1 [205 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-filesystem1.67-dev amd64 1.67.0-0ubuntu1 [246 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libboost-filesystem-dev amd64 1.67.0.0ubuntu1 [2972 B] Get:93 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libboost-regex1.67.0 amd64 1.67.0-0ubuntu1 [456 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main amd64 libicu-le-hb0 amd64 1.0.3+git161113-5 [14.4 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main amd64 libiculx60 amd64 60.2-6ubuntu1 [19.0 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main amd64 libharfbuzz-icu0 amd64 1.8.3-1 [5644 B] Get:97 http://ftpmaster.internal/ubuntu cosmic/main amd64 libharfbuzz-gobject0 amd64 1.8.3-1 [13.6 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglib2.0-bin amd64 2.56.1-2ubuntu1 [68.8 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3-lib2to3 all 3.6.6-1 [76.9 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3-distutils all 3.6.6-1 [141 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglib2.0-dev-bin amd64 2.56.1-2ubuntu1 [102 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpcre16-3 amd64 2:8.39-9 [147 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpcre32-3 amd64 2:8.39-9 [138 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpcrecpp0v5 amd64 2:8.39-9 [15.3 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpcre3-dev amd64 2:8.39-9 [537 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglib2.0-dev amd64 2.56.1-2ubuntu1 [1382 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgraphite2-dev amd64 1.3.11-2 [14.5 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main amd64 libharfbuzz-dev amd64 1.8.3-1 [358 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main amd64 libicu-le-hb-dev amd64 1.0.3+git161113-5 [29.6 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main amd64 libicu-dev amd64 60.2-6ubuntu1 [8894 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libboost-regex1.67-dev amd64 1.67.0-0ubuntu1 [510 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libboost-iostreams1.67.0 amd64 1.67.0-0ubuntu1 [223 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libboost-iostreams1.67-dev amd64 1.67.0-0ubuntu1 [230 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libboost-iostreams-dev amd64 1.67.0.0ubuntu1 [2920 B] Get:117 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-program-options1.67.0 amd64 1.67.0-0ubuntu1 [331 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-program-options1.67-dev amd64 1.67.0-0ubuntu1 [356 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libboost-program-options-dev amd64 1.67.0.0ubuntu1 [2948 B] Get:120 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libboost-regex-dev amd64 1.67.0.0ubuntu1 [3192 B] Get:121 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libboost-system-dev amd64 1.67.0.0ubuntu1 [3080 B] Get:122 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-thread1.67.0 amd64 1.67.0-0ubuntu1 [240 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost-thread1.67-dev amd64 1.67.0-0ubuntu1 [243 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libboost-thread-dev amd64 1.67.0.0ubuntu1 [2964 B] Get:125 http://ftpmaster.internal/ubuntu cosmic/main amd64 libboost1.67-tools-dev amd64 1.67.0-0ubuntu1 [1437 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libboost-tools-dev amd64 1.67.0.0ubuntu1 [3108 B] Get:127 http://ftpmaster.internal/ubuntu cosmic/main amd64 libexpat1-dev amd64 2.2.5-3 [122 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-double3 amd64 3.3.8-1build1 [727 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-long3 amd64 3.3.8-1build1 [313 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-quad3 amd64 3.3.8-1build1 [552 kB] Get:131 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-single3 amd64 3.3.8-1build1 [756 kB] Get:132 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-bin amd64 3.3.8-1build1 [32.3 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-dev amd64 3.3.8-1build1 [2087 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfontconfig1 amd64 2.12.6-0ubuntu2 [137 kB] Get:135 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libpng-dev amd64 1.6.34-2 [177 kB] Get:136 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfreetype6-dev amd64 2.8.1-2ubuntu2 [2539 kB] Get:137 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfontconfig1-dev amd64 2.12.6-0ubuntu2 [689 kB] Get:138 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:139 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:140 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtiff5 amd64 4.0.9-6 [152 kB] Get:141 http://ftpmaster.internal/ubuntu cosmic/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:142 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB] Get:143 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgd3 amd64 2.2.5-4 [118 kB] Get:144 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg-turbo8-dev amd64 1.5.2-0ubuntu6 [225 kB] Get:145 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:146 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:147 http://ftpmaster.internal/ubuntu cosmic/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:148 http://ftpmaster.internal/ubuntu cosmic/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:149 http://ftpmaster.internal/ubuntu cosmic/main amd64 x11proto-core-dev all 2018.4-4 [2620 B] Get:150 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxau-dev amd64 1:1.0.8-1 [11.1 kB] Get:151 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [25.1 kB] Get:152 http://ftpmaster.internal/ubuntu cosmic/main amd64 xtrans-dev all 1.3.5-1 [70.5 kB] Get:153 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpthread-stubs0-dev amd64 0.3-4 [4068 B] Get:154 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb1-dev amd64 1.13-1 [80.0 kB] Get:155 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libx11-dev amd64 2:1.6.5-1 [640 kB] Get:156 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxpm-dev amd64 1:3.5.12-1 [87.4 kB] Get:157 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:158 http://ftpmaster.internal/ubuntu cosmic/main amd64 libice-dev amd64 2:1.0.9-2 [46.8 kB] Get:159 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsm-dev amd64 2:1.2.2-1 [16.2 kB] Get:160 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxt-dev amd64 1:1.1.5-1 [395 kB] Get:161 http://ftpmaster.internal/ubuntu cosmic/main amd64 libvpx5 amd64 1.7.0-3 [798 kB] Get:162 http://ftpmaster.internal/ubuntu cosmic/main amd64 libvpx-dev amd64 1.7.0-3 [934 kB] Get:163 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjbig-dev amd64 2.1-3.1build1 [25.2 kB] Get:164 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblzma-dev amd64 5.2.2-1.3 [145 kB] Get:165 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtiffxx5 amd64 4.0.9-6 [5800 B] Get:166 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtiff5-dev amd64 4.0.9-6 [274 kB] Get:167 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtiff-dev amd64 4.0.9-6 [2252 B] Get:168 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgd-dev amd64 2.2.5-4 [246 kB] Get:169 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjs-jquery all 3.2.1-1 [152 kB] Get:170 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libeigen3-dev all 3.3.4-4 [810 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.2 MB in 2s (58.0 MB/s) Selecting previously unselected package libpython3.6-minimal:amd64. (Reading database ... 13727 files and directories currently installed.) Preparing to unpack .../libpython3.6-minimal_3.6.6-1_amd64.deb ... Unpacking libpython3.6-minimal:amd64 (3.6.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.5-3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../python3.6-minimal_3.6.6-1_amd64.deb ... Unpacking python3.6-minimal (3.6.6-1) ... Setting up libpython3.6-minimal:amd64 (3.6.6-1) ... Setting up libexpat1:amd64 (2.2.5-3) ... Setting up python3.6-minimal (3.6.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13974 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.6-1_amd64.deb ... Unpacking python3-minimal (3.6.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../2-libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package libpython3.6-stdlib:amd64. Preparing to unpack .../3-libpython3.6-stdlib_3.6.6-1_amd64.deb ... Unpacking libpython3.6-stdlib:amd64 (3.6.6-1) ... Selecting previously unselected package python3.6. Preparing to unpack .../4-python3.6_3.6.6-1_amd64.deb ... Unpacking python3.6 (3.6.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../5-libpython3-stdlib_3.6.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.6.6-1) ... Setting up python3-minimal (3.6.6-1) ... Selecting previously unselected package python3. (Reading database ... 14402 files and directories currently installed.) Preparing to unpack .../000-python3_3.6.6-1_amd64.deb ... Unpacking python3 (3.6.6-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../001-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../002-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../003-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../004-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../005-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../006-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libjpeg-turbo8:amd64. 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Processing triggers for systemd (238-5ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (x86_64) Toolchain package versions: binutils_2.31-1ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-25ubuntu1 g++-8_8.1.0-10ubuntu1 gcc-7_7.3.0-25ubuntu1 gcc-8_8.1.0-10ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-25ubuntu1 libstdc++-8-dev_8.1.0-10ubuntu1 libstdc++6_8.1.0-10ubuntu1 linux-libc-dev_4.17.0-5.6 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31-1ubuntu1 binutils-common_2.31-1ubuntu1 binutils-x86-64-linux-gnu_2.31-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 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grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 icu-devtools_60.2-6ubuntu1 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha2 libarchive-zip-perl_1.60-1ubuntu1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-25ubuntu1 libasan5_8.1.0-10ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-10ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.31-1ubuntu1 libblkid1_2.32-0.1ubuntu1 libboost-atomic1.67-dev_1.67.0-0ubuntu1 libboost-atomic1.67.0_1.67.0-0ubuntu1 libboost-chrono-dev_1.67.0.0ubuntu1 libboost-chrono1.67-dev_1.67.0-0ubuntu1 libboost-chrono1.67.0_1.67.0-0ubuntu1 libboost-date-time-dev_1.67.0.0ubuntu1 libboost-date-time1.67-dev_1.67.0-0ubuntu1 libboost-date-time1.67.0_1.67.0-0ubuntu1 libboost-dev_1.67.0.0ubuntu1 libboost-filesystem-dev_1.67.0.0ubuntu1 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libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjs-jquery_3.2.1-1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 libllvm6.0_1:6.0.1-2ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-10ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libmpx2_8.1.0-10ubuntu1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.5-4 libosp5_1.5.2-13ubuntu2 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng-dev_1.6.34-2 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpthread-stubs0-dev_0.3-4 libpython3-stdlib_3.6.6-1 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libquadmath0_8.1.0-10ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-25ubuntu1 libstdc++-8-dev_8.1.0-10ubuntu1 libstdc++6_8.1.0-10ubuntu1 libsystemd0_238-5ubuntu2 libtasn1-6_4.13-3 libtiff-dev_4.0.9-6 libtiff5_4.0.9-6 libtiff5-dev_4.0.9-6 libtiffxx5_4.0.9-6 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1build1 libtsan0_8.1.0-10ubuntu1 libubsan0_7.3.0-25ubuntu1 libubsan1_8.1.0-10ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libvpx-dev_1.7.0-3 libvpx5_1.7.0-3 libwebp6_0.6.1-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libxapian30_1.4.6-2 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-7build1 libxpm-dev_1:3.5.12-1 libxpm4_1:3.5.12-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-5.6 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 opensp_1.5.2-13ubuntu2 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python3_3.6.6-1 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.6-1 python3.6_3.6.6-1 python3.6-minimal_3.6.6-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libpwiz-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 sgml-base_1.29 sgml-data_2.0.11 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 ucf_3.0038 util-linux_2.32-0.1ubuntu1 x11-common_1:7.7+19ubuntu8 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 xml-core_0.18 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Jul 17 13:24:24 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpwiz_3.0.10827-4build1.dsc dpkg-source: info: extracting libpwiz in libpwiz-3.0.10827 dpkg-source: info: unpacking libpwiz_3.0.10827.orig.tar.gz dpkg-source: info: unpacking libpwiz_3.0.10827-4build1.debian.tar.xz dpkg-source: info: applying 0001-New-patch-for-the-missing-eigen3-nnls-header-file.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15138123 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15138123 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15138123 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libpwiz dpkg-buildpackage: info: source version 3.0.10827-4build1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build libpwiz-3.0.10827 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: parallel=4 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the clean target dh_testdir dh_testroot rm -f debian/msconvert.1 rm -f debian/idconvert.1 rm -f debian/mscat.1 rm -f debian/txt2mzml.1 rm -rf /<>/debian/build rm -rf debian/includes rm -rf doc/dox/html rm -f configure-stamp rm -f build-arch-stamp rm -f build-indep-stamp dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars debian/libpwiz-doc.substvars debian/files rm -fr -- debian/libpwiz-dev/ debian/tmp/ debian/libpwiz3/ debian/libpwiz-tools/ debian/libpwiz-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: parallel=4 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3/ debian/libpwiz3/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /<>/debian/build cp -rpf autotools libraries pwiz pwiz_tools /<>/debian/build echo "BOOST_LDPATH = /usr/lib/x86_64-linux-gnu" > /<>/debian/build/autotools/Makefile.am-tmp cat /<>/debian/build/autotools/Makefile.am >> /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/eigen3-nnls"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/CSpline"|' /<>/debian/build/autotools/Makefile.am-tmp mv /<>/debian/build/autotools/Makefile.am-tmp /<>/debian/build/autotools/Makefile.am rm -f /<>/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /<>/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for memory.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for int32_t... yes checking for int64_t... yes checking for off_t... yes checking for C/C++ restrict keyword... __restrict checking for size_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for ptrdiff_t... yes checking for error_at_line... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking whether time.h and sys/time.h may both be included... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for alarm... yes checking for working mktime... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for atexit... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for modf... yes checking for pow... no checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for strtoull... yes checking for Boost headers version >= 1.43.0... yes checking for Boost's header version... 1_67 checking for the flags needed to use pthreads... -pthread checking for the toolset name used by Boost for g++... configure: WARNING: could not figure out which toolset name to use for g++ checking boost/system/error_code.hpp usability... yes checking boost/system/error_code.hpp presence... yes checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking boost/thread.hpp usability... yes checking boost/thread.hpp presence... yes checking for boost/thread.hpp... yes checking for the Boost thread library... 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(cached) yes checking boost/iostreams/device/file_descriptor.hpp usability... yes checking boost/iostreams/device/file_descriptor.hpp presence... yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking boost/date_time/posix_time/posix_time.hpp usability... yes checking boost/date_time/posix_time/posix_time.hpp presence... yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking boost/program_options.hpp usability... yes checking boost/program_options.hpp presence... yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/chrono.hpp usability... yes checking boost/chrono.hpp presence... yes checking for boost/chrono.hpp... yes checking for the Boost chrono library... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /<>/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/x86_64-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/<>/debian/build /usr/bin/make install make[1]: Entering directory '/<>/debian/build' depbase=`echo libraries/boost_aux/libs/nowide/src/iostream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF $depbase.Tpo -c -o libraries/boost_aux/libs/nowide/src/iostream.lo libraries/boost_aux/libs/nowide/src/iostream.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -fPIC -DPIC -o libraries/boost_aux/libs/nowide/src/.libs/iostream.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -o libraries/boost_aux/libs/nowide/src/iostream.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/T2D/.deps/Reader_ABI_T2D.Tpo -c pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/T2D/.libs/Reader_ABI_T2D.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/Reader.lo -MD -MP -MF pwiz/data/tradata/.deps/Reader.Tpo -c pwiz/data/tradata/Reader.cpp -o pwiz/data/tradata/Reader.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeCalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeCalculator.lo pwiz/utility/chemistry/IsotopeCalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeCalculator.Tpo -c pwiz/utility/chemistry/IsotopeCalculator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeCalculator.o In file included from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeCalculator.hpp:29, from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/utility/chemistry/IsotopeCalculator.cpp:27: pwiz/utility/chemistry/IsotopeTable.hpp:50:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeCalculator.hpp:29, from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeCalculator.Tpo -c pwiz/utility/chemistry/IsotopeCalculator.cpp -o pwiz/utility/chemistry/IsotopeCalculator.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_mzXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_mzXML.lo pwiz/data/msdata/Serializer_mzXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzXML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzXML.Tpo -c pwiz/data/msdata/Serializer_mzXML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_mzXML.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzXML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzXML.Tpo -c pwiz/data/msdata/Serializer_mzXML.cpp -o pwiz/data/msdata/Serializer_mzXML.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 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pwiz/data/msdata/MSData.lo -MD -MP -MF pwiz/data/msdata/.deps/MSData.Tpo -c pwiz/data/msdata/MSData.cpp -o pwiz/data/msdata/MSData.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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pwiz/data/tradata/DefaultReaderList.lo -MD -MP -MF pwiz/data/tradata/.deps/DefaultReaderList.Tpo -c pwiz/data/tradata/DefaultReaderList.cpp -o pwiz/data/tradata/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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-c -o pwiz/data/msdata/Index_mzML.lo pwiz/data/msdata/Index_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Index_mzML.Tpo -c pwiz/data/msdata/Index_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Index_mzML.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Index_mzML.Tpo -c pwiz/data/msdata/Index_mzML.cpp -o pwiz/data/msdata/Index_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/proteome/IPIFASTADatabase.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/proteome/IPIFASTADatabase.lo pwiz/utility/proteome/IPIFASTADatabase.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -fPIC -DPIC -o pwiz/utility/proteome/.libs/IPIFASTADatabase.o In file included from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: pwiz/utility/proteome/IPIFASTADatabase.hpp:72:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from pwiz/utility/proteome/IPIFASTADatabase.hpp:29, from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -o pwiz/utility/proteome/IPIFASTADatabase.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/MZTolerance.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/MZTolerance.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/MZTolerance.lo pwiz/utility/chemistry/MZTolerance.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/MZTolerance.lo -MD -MP -MF pwiz/utility/chemistry/.deps/MZTolerance.Tpo -c pwiz/utility/chemistry/MZTolerance.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/MZTolerance.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/MZTolerance.lo -MD -MP -MF pwiz/utility/chemistry/.deps/MZTolerance.Tpo -c pwiz/utility/chemistry/MZTolerance.cpp -o pwiz/utility/chemistry/MZTolerance.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRefine.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRefine.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRefine.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 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-DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o >/dev/null 2>&1 depbase=`echo pwiz/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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"/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/Version.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/Version.lo pwiz/Version.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/Version.lo -MD -MP -MF pwiz/.deps/Version.Tpo -c pwiz/Version.cpp -fPIC -DPIC -o pwiz/.libs/Version.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/Version.lo -MD -MP -MF pwiz/.deps/Version.Tpo -c pwiz/Version.cpp -o pwiz/Version.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 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pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_mzML.lo pwiz/data/msdata/Serializer_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzML.Tpo -c pwiz/data/msdata/Serializer_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_mzML.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzML.Tpo -c pwiz/data/msdata/Serializer_mzML.cpp -o pwiz/data/msdata/Serializer_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/minimxml/XMLWriter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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$depbase.Tpo -c -o pwiz/utility/minimxml/XMLWriter.lo pwiz/utility/minimxml/XMLWriter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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/<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/minimxml/XMLWriter.lo -MD -MP -MF pwiz/utility/minimxml/.deps/XMLWriter.Tpo -c pwiz/utility/minimxml/XMLWriter.cpp -fPIC -DPIC -o pwiz/utility/minimxml/.libs/XMLWriter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/minimxml/XMLWriter.lo -MD -MP -MF pwiz/utility/minimxml/.deps/XMLWriter.Tpo -c pwiz/utility/minimxml/XMLWriter.cpp -o pwiz/utility/minimxml/XMLWriter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/TruncatedLorentzianParameters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" 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pwiz/analysis/frequency/TruncatedLorentzianParameters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzianParameters.lo pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/ChromatogramList_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp -o pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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-MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZRefiner.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_pepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" 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mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -o pwiz/analysis/peptideid/PeptideID_pepXML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:53:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(const Config& config); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:27: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:60:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::FrequencyEstimatorPhysicalModel::create(const pwiz::frequency::FrequencyEstimatorPhysicalModel::Config&)’: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:63:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return auto_ptr( ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In member function ‘virtual pwiz::data::peakdata::Peak FrequencyEstimatorPhysicalModelImpl::estimate(const FrequencyData&, const Peak&) const’: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:100:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr estimator = TruncatedLorentzianEstimator::create(); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakPicker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakPicker.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakPicker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.o >/dev/null 2>&1 depbase=`echo pwiz_tools/common/MSDataAnalyzerApplication.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/common/MSDataAnalyzerApplication.lo pwiz_tools/common/MSDataAnalyzerApplication.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF pwiz_tools/common/.deps/MSDataAnalyzerApplication.Tpo -c pwiz_tools/common/MSDataAnalyzerApplication.cpp -fPIC -DPIC -o pwiz_tools/common/.libs/MSDataAnalyzerApplication.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF pwiz_tools/common/.deps/MSDataAnalyzerApplication.Tpo -c pwiz_tools/common/MSDataAnalyzerApplication.cpp -o pwiz_tools/common/MSDataAnalyzerApplication.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxSolver.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxSolver.lo pwiz/analysis/demux/DemuxSolver.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxSolver.Tpo -c pwiz/analysis/demux/DemuxSolver.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxSolver.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxSolver.Tpo -c pwiz/analysis/demux/DemuxSolver.cpp -o pwiz/analysis/demux/DemuxSolver.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFinder.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 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g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/IO.lo -MD -MP -MF pwiz/data/msdata/.deps/IO.Tpo -c pwiz/data/msdata/IO.cpp -o pwiz/data/msdata/IO.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetector.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:30, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:27: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(const Function& function, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:62:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] PWIZ_API_DECL auto_ptr TruncatedLorentzianEstimator::create() ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::TruncatedLorentzianEstimator::create()’: pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:64:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return auto_ptr(new TruncatedLorentzianEstimatorImpl); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In member function ‘virtual pwiz::frequency::TruncatedLorentzianParameters pwiz::frequency::TruncatedLorentzianEstimatorImpl::iteratedEstimate(const pwiz::data::FrequencyData&, const pwiz::frequency::TruncatedLorentzianParameters&, int) const’: pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:146:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr pe = ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/CubicHermiteSpline.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/CubicHermiteSpline.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/CubicHermiteSpline.lo pwiz/analysis/demux/CubicHermiteSpline.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/CubicHermiteSpline.lo -MD -MP -MF pwiz/analysis/demux/.deps/CubicHermiteSpline.Tpo -c pwiz/analysis/demux/CubicHermiteSpline.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/CubicHermiteSpline.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/CubicHermiteSpline.lo -MD -MP -MF pwiz/analysis/demux/.deps/CubicHermiteSpline.Tpo -c pwiz/analysis/demux/CubicHermiteSpline.cpp -o pwiz/analysis/demux/CubicHermiteSpline.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionTIC.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionTIC.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/RegionTIC.lo pwiz/analysis/passive/RegionTIC.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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pwiz/analysis/passive/RegionTIC.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionTIC.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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/<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionTIC.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionTIC.Tpo -c pwiz/analysis/passive/RegionTIC.cpp -o pwiz/analysis/passive/RegionTIC.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 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pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/Reader_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/LocalMaximumPeakDetector.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 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$depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 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-I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/LocalMaximumPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/LocalMaximumPeakDetector.Tpo -c pwiz/analysis/common/LocalMaximumPeakDetector.cpp -o pwiz/analysis/common/LocalMaximumPeakDetector.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/ProteinListCache.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" 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./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/ExtraZeroSamplesFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/ExtraZeroSamplesFilter.lo pwiz/analysis/common/ExtraZeroSamplesFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/ExtraZeroSamplesFilter.lo -MD -MP -MF pwiz/analysis/common/.deps/ExtraZeroSamplesFilter.Tpo -c pwiz/analysis/common/ExtraZeroSamplesFilter.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/ExtraZeroSamplesFilter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/ExtraZeroSamplesFilter.lo -MD -MP -MF pwiz/analysis/common/.deps/ExtraZeroSamplesFilter.Tpo -c pwiz/analysis/common/ExtraZeroSamplesFilter.cpp -o pwiz/analysis/common/ExtraZeroSamplesFilter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o In file included from pwiz/analysis/peakdetect/FeatureDetector.hpp:27, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp:28, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp:25: pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumInfo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/TabularConfig.lo -MD -MP -MF pwiz/analysis/passive/.deps/TabularConfig.Tpo -c pwiz/analysis/passive/TabularConfig.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/TabularConfig.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/TabularConfig.lo -MD -MP -MF pwiz/analysis/passive/.deps/TabularConfig.Tpo -c pwiz/analysis/passive/TabularConfig.cpp -o pwiz/analysis/passive/TabularConfig.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/MinimumPepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/MinimumPepXML.lo pwiz/data/misc/MinimumPepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/MinimumPepXML.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -o pwiz/data/misc/MinimumPepXML.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Peptide.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Peptide.lo pwiz/data/proteome/Peptide.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF pwiz/data/proteome/.deps/Peptide.Tpo -c pwiz/data/proteome/Peptide.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Peptide.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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pwiz/data/proteome/.deps/Peptide.Tpo -c pwiz/data/proteome/Peptide.cpp -o pwiz/data/proteome/Peptide.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/SpectrumList_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp -o pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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-DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/Reader_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Agilent/.libs/Reader_Agilent.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/Reader_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp -o pwiz/data/vendor_readers/Agilent/Reader_Agilent.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Reader_FASTA.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Reader_FASTA.lo -MD -MP -MF pwiz/data/proteome/.deps/Reader_FASTA.Tpo -c pwiz/data/proteome/Reader_FASTA.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Reader_FASTA.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Reader_FASTA.lo -MD -MP -MF pwiz/data/proteome/.deps/Reader_FASTA.Tpo -c pwiz/data/proteome/Reader_FASTA.cpp -o pwiz/data/proteome/Reader_FASTA.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/Chemistry.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/Chemistry.lo -MD -MP -MF pwiz/utility/chemistry/.deps/Chemistry.Tpo -c pwiz/utility/chemistry/Chemistry.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/Chemistry.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/Chemistry.lo -MD -MP -MF pwiz/utility/chemistry/.deps/Chemistry.Tpo -c pwiz/utility/chemistry/Chemistry.cpp -o pwiz/utility/chemistry/Chemistry.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_flat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_flat.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_flat.Tpo -c pwiz/analysis/peptideid/PeptideID_flat.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideID_flat.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_flat.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_flat.Tpo -c pwiz/analysis/peptideid/PeptideID_flat.cpp -o pwiz/analysis/peptideid/PeptideID_flat.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Serializer_Text.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_Text.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_Text.Tpo -c pwiz/data/identdata/Serializer_Text.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Serializer_Text.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_Text.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_Text.Tpo -c pwiz/data/identdata/Serializer_Text.cpp -o pwiz/data/identdata/Serializer_Text.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Diff.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFTTestData.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFTTestData.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFTTestData.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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-MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/proteome_processing/ProteinListFactory.lo pwiz/analysis/proteome_processing/ProteinListFactory.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -o pwiz/analysis/proteome_processing/ProteinListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/SpectrumTable.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/SpectrumTable.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/SpectrumTable.lo pwiz/analysis/passive/SpectrumTable.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/SpectrumTable.lo -MD -MP -MF pwiz/analysis/passive/.deps/SpectrumTable.Tpo -c pwiz/analysis/passive/SpectrumTable.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/SpectrumTable.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/SpectrumTable.lo -MD -MP -MF pwiz/analysis/passive/.deps/SpectrumTable.Tpo -c pwiz/analysis/passive/SpectrumTable.cpp -o pwiz/analysis/passive/SpectrumTable.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxDebugWriter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxDebugWriter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxDebugWriter.lo pwiz/analysis/demux/DemuxDebugWriter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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-I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxDebugWriter.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxDebugWriter.Tpo -c pwiz/analysis/demux/DemuxDebugWriter.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxDebugWriter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 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-Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/Version.lo -MD -MP -MF pwiz/data/tradata/.deps/Version.Tpo -c pwiz/data/tradata/Version.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/Version.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/Version.lo -MD -MP -MF pwiz/data/tradata/.deps/Version.Tpo -c pwiz/data/tradata/Version.cpp -o pwiz/data/tradata/Version.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_MSn.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_MSn.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_MSn.lo pwiz/data/msdata/SpectrumList_MSn.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_MSn.Tpo -c pwiz/data/msdata/SpectrumList_MSn.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_MSn.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_MSn.Tpo -c pwiz/data/msdata/SpectrumList_MSn.cpp -o pwiz/data/msdata/SpectrumList_MSn.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/PepXMLCat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/PepXMLCat.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -o pwiz/analysis/passive/PepXMLCat.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumIterator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. 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--tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 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-I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Demux.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Demux.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" 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pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_Demux.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/random_access_compressed_ifstream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/random_access_compressed_ifstream.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/random_access_compressed_ifstream.lo pwiz/utility/misc/random_access_compressed_ifstream.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Smoother.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Smoother.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Smoother.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_Smoother.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/ChromatogramList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Shimadzu/.libs/ChromatogramList_Shimadzu.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Version.lo -MD -MP -MF pwiz/data/msdata/.deps/Version.Tpo -c pwiz/data/msdata/Version.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Version.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 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pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/T2D/.deps/SpectrumList_ABI_T2D.Tpo -c pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp -o pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/References.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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-DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/References.lo -MD -MP -MF pwiz/data/tradata/.deps/References.Tpo -c pwiz/data/tradata/References.cpp -o pwiz/data/tradata/References.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/examples.lo | sed 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-I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_LockmassRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_LockmassRefiner.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/Unimod.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorSimple.lo pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o In file included from pwiz/analysis/peakdetect/FeatureDetector.hpp:27, from pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp:26, from pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp:25: pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ whose type uses the anonymous namespace [-Wsubobject-linkage] libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -o pwiz/analysis/peakdetect/FeatureDetectorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorMassFilter.Tpo -c pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/PrecursorMassFilter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorMassFilter.Tpo -c pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp -o pwiz/analysis/spectrum_processing/PrecursorMassFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/CVTranslator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/common/CVTranslator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/common/CVTranslator.lo pwiz/data/common/CVTranslator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/common/CVTranslator.lo -MD -MP -MF pwiz/data/common/.deps/CVTranslator.Tpo -c pwiz/data/common/CVTranslator.cpp -o pwiz/data/common/CVTranslator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/SpectrumPeakExtractor.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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pwiz/analysis/demux/SpectrumPeakExtractor.lo pwiz/analysis/demux/SpectrumPeakExtractor.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF pwiz/analysis/demux/.deps/SpectrumPeakExtractor.Tpo -c pwiz/analysis/demux/SpectrumPeakExtractor.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/SpectrumPeakExtractor.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF pwiz/analysis/demux/.deps/SpectrumPeakExtractor.Tpo -c pwiz/analysis/demux/SpectrumPeakExtractor.cpp -o pwiz/analysis/demux/SpectrumPeakExtractor.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Digestion.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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pwiz/analysis/passive/RegionSlice.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/RegionSlice.lo pwiz/analysis/passive/RegionSlice.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteomeDataFile.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/ProteomeDataFile.lo pwiz/data/proteome/ProteomeDataFile.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteomeDataFile.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteomeDataFile.Tpo -c pwiz/data/proteome/ProteomeDataFile.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/ProteomeDataFile.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteomeDataFile.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteomeDataFile.Tpo -c pwiz/data/proteome/ProteomeDataFile.cpp -o pwiz/data/proteome/ProteomeDataFile.o >/dev/null 2>&1 depbase=`echo libraries/libsvm-3.0/svm.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF $depbase.Tpo -c -o libraries/libsvm-3.0/svm.lo libraries/libsvm-3.0/svm.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF libraries/libsvm-3.0/.deps/svm.Tpo -c libraries/libsvm-3.0/svm.cpp -fPIC -DPIC -o libraries/libsvm-3.0/.libs/svm.o libraries/libsvm-3.0/svm.cpp: In function ‘svm_model* svm_load_model(const char*)’: libraries/libsvm-3.0/svm.cpp:2707:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%80s",cmd); ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2711:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%80s",cmd); ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2733:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%80s",cmd); ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2754:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",¶m.degree); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2756:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%lf",¶m.gamma); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2758:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%lf",¶m.coef0); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2760:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&model->nr_class); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2762:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&model->l); ~~~~~~^~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2768:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%lf",&model->rho[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2775:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&model->label[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2782:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%lf",&model->probA[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2789:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%lf",&model->probB[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2796:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&model->nSV[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF libraries/libsvm-3.0/.deps/svm.Tpo -c libraries/libsvm-3.0/svm.cpp -o libraries/libsvm-3.0/svm.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/ChromatogramList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Waters/.libs/ChromatogramList_Waters.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/ChromatogramList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp -o pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/ThresholdFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/ThresholdFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/ThresholdFilter.lo pwiz/analysis/spectrum_processing/ThresholdFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/ThresholdFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/ThresholdFilter.Tpo -c pwiz/analysis/spectrum_processing/ThresholdFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/ThresholdFilter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/ThresholdFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/ThresholdFilter.Tpo -c pwiz/analysis/spectrum_processing/ThresholdFilter.cpp -o pwiz/analysis/spectrum_processing/ThresholdFilter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Filter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Filter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Filter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_Filter.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/Reader_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/Reader_Waters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Waters/Reader_Waters.lo pwiz/data/vendor_readers/Waters/Reader_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I 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-DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/Reader_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/Reader_Waters.Tpo -c pwiz/data/vendor_readers/Waters/Reader_Waters.cpp -o pwiz/data/vendor_readers/Waters/Reader_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/MSDataAnalyzer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MSDataAnalyzer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/MSDataAnalyzer.lo pwiz/analysis/passive/MSDataAnalyzer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MSDataAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/MSDataAnalyzer.Tpo -c pwiz/analysis/passive/MSDataAnalyzer.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/MSDataAnalyzer.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MSDataAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/MSDataAnalyzer.Tpo -c pwiz/analysis/passive/MSDataAnalyzer.cpp -o pwiz/analysis/passive/MSDataAnalyzer.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Serializer_mzid.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_mzid.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Serializer_mzid.lo pwiz/data/identdata/Serializer_mzid.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_mzid.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_mzid.Tpo -c pwiz/data/identdata/Serializer_mzid.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Serializer_mzid.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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--mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteomeData.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteomeData.Tpo -c pwiz/data/proteome/ProteomeData.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/ProteomeData.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteomeData.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteomeData.Tpo -c pwiz/data/proteome/ProteomeData.cpp -o pwiz/data/proteome/ProteomeData.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumWorkerThreads.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumWorkerThreads.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumWorkerThreads.lo pwiz/data/msdata/SpectrumWorkerThreads.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumWorkerThreads.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumWorkerThreads.Tpo -c pwiz/data/msdata/SpectrumWorkerThreads.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumWorkerThreads.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumWorkerThreads.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumWorkerThreads.Tpo -c pwiz/data/msdata/SpectrumWorkerThreads.cpp -o pwiz/data/msdata/SpectrumWorkerThreads.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2NoiseFilter.Tpo -c pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/MS2NoiseFilter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2NoiseFilter.Tpo -c pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp -o pwiz/analysis/spectrum_processing/MS2NoiseFilter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxDebugReader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxDebugReader.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxDebugReader.lo pwiz/analysis/demux/DemuxDebugReader.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxDebugReader.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxDebugReader.Tpo -c pwiz/analysis/demux/DemuxDebugReader.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxDebugReader.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxDebugReader.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxDebugReader.Tpo -c pwiz/analysis/demux/DemuxDebugReader.cpp -o pwiz/analysis/demux/DemuxDebugReader.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Modification.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Modification.lo pwiz/data/proteome/Modification.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF pwiz/data/proteome/.deps/Modification.Tpo -c pwiz/data/proteome/Modification.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Modification.o pwiz/data/proteome/Modification.cpp:89:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr formula_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/data/proteome/Peptide.hpp:29, from pwiz/data/proteome/Modification.hpp:30, from pwiz/data/proteome/Modification.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF pwiz/data/proteome/.deps/Modification.Tpo -c pwiz/data/proteome/Modification.cpp -o pwiz/data/proteome/Modification.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/MetadataReporter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MetadataReporter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/MetadataReporter.lo pwiz/analysis/passive/MetadataReporter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MetadataReporter.lo -MD -MP -MF pwiz/analysis/passive/.deps/MetadataReporter.Tpo -c pwiz/analysis/passive/MetadataReporter.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/MetadataReporter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MetadataReporter.lo -MD -MP -MF pwiz/analysis/passive/.deps/MetadataReporter.Tpo -c pwiz/analysis/passive/MetadataReporter.cpp -o pwiz/analysis/passive/MetadataReporter.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/DefaultReaderList.lo pwiz/data/identdata/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/identdata/.deps/DefaultReaderList.Tpo -c pwiz/data/identdata/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/DefaultReaderList.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/identdata/.deps/DefaultReaderList.Tpo -c pwiz/data/identdata/DefaultReaderList.cpp -o pwiz/data/identdata/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" 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-DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumListFactory.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumListFactory.Tpo -c pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumListFactory.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumListFactory.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumListFactory.Tpo -c pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp -o pwiz/analysis/spectrum_processing/SpectrumListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinList_Filter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/proteome_processing/ProteinList_Filter.lo pwiz/analysis/proteome_processing/ProteinList_Filter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinList_Filter.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_Filter.Tpo -c pwiz/analysis/proteome_processing/ProteinList_Filter.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinList_Filter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 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-D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinList_Filter.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_Filter.Tpo -c pwiz/analysis/proteome_processing/ProteinList_Filter.cpp -o pwiz/analysis/proteome_processing/ProteinList_Filter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeStateCalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_protXML.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_protXML.Tpo -c pwiz/data/identdata/Serializer_protXML.cpp -o pwiz/data/identdata/Serializer_protXML.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Diff.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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-I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Diff.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Diff.lo pwiz/data/msdata/Diff.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Reader.lo -MD -MP -MF pwiz/data/identdata/.deps/Reader.Tpo -c pwiz/data/identdata/Reader.cpp -o pwiz/data/identdata/Reader.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/ChromatogramList_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 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-DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/ChromatogramList_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/ChromatogramList_mzML.lo pwiz/data/msdata/ChromatogramList_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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-MF pwiz/data/msdata/.deps/ChromatogramList_mzML.Tpo -c pwiz/data/msdata/ChromatogramList_mzML.cpp -o pwiz/data/msdata/ChromatogramList_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/Reader_ABI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/Reader_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/Reader_ABI.Tpo -c pwiz/data/vendor_readers/ABI/Reader_ABI.cpp -o pwiz/data/vendor_readers/ABI/Reader_ABI.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/OverlapDemultiplexer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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-I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/OverlapDemultiplexer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/OverlapDemultiplexer.lo pwiz/analysis/demux/OverlapDemultiplexer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/SpectrumList_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Thermo/.libs/SpectrumList_Thermo.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/SpectrumList_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp -o pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/ChromatogramList_ABI.Tpo -c pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp -o pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/Base64.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" 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-DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/Base64.lo -MD -MP -MF pwiz/utility/misc/.deps/Base64.Tpo -c pwiz/utility/misc/Base64.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/Base64.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/Base64.lo -MD -MP -MF pwiz/utility/misc/.deps/Base64.Tpo -c pwiz/utility/misc/Base64.cpp -o pwiz/utility/misc/Base64.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/MagnitudeLorentzian.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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-MF $depbase.Tpo -c -o pwiz/analysis/frequency/MagnitudeLorentzian.lo pwiz/analysis/frequency/MagnitudeLorentzian.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/MagnitudeLorentzian.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzian.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzian.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/MagnitudeLorentzian.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/MagnitudeLorentzian.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzian.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzian.cpp -o pwiz/analysis/frequency/MagnitudeLorentzian.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/ChromatogramList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Agilent/.libs/ChromatogramList_Agilent.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_DecoyGenerator.Tpo -c pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinList_DecoyGenerator.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_DecoyGenerator.Tpo -c pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp -o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSNumpress.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" 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pwiz/data/msdata/MSNumpress.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/MSNumpress.lo pwiz/data/msdata/MSNumpress.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/MSNumpress.lo -MD -MP -MF pwiz/data/msdata/.deps/MSNumpress.Tpo -c pwiz/data/msdata/MSNumpress.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/MSNumpress.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/MSNumpress.lo -MD -MP -MF pwiz/data/msdata/.deps/MSNumpress.Tpo -c pwiz/data/msdata/MSNumpress.cpp -o pwiz/data/msdata/MSNumpress.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/Stats.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/math/Stats.lo pwiz/utility/math/Stats.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -fPIC -DPIC -o pwiz/utility/math/.libs/Stats.o In file included from pwiz/utility/math/Stats.cpp:26: pwiz/utility/math/Stats.hpp:57:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/numeric/ublas/fwd.hpp:18, from /usr/include/boost/numeric/ublas/detail/config.hpp:299, from /usr/include/boost/numeric/ublas/exception.hpp:19, from /usr/include/boost/numeric/ublas/storage.hpp:25, from /usr/include/boost/numeric/ublas/vector.hpp:21, from pwiz/utility/math/Stats.hpp:29, from pwiz/utility/math/Stats.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -o pwiz/utility/math/Stats.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/TruncatedLorentzian.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzian.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzian.lo pwiz/analysis/frequency/TruncatedLorentzian.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzian.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzian.Tpo -c pwiz/analysis/frequency/TruncatedLorentzian.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzian.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzian.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzian.Tpo -c pwiz/analysis/frequency/TruncatedLorentzian.cpp -o pwiz/analysis/frequency/TruncatedLorentzian.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/Diff.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/Diff.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/tradata/Diff.lo pwiz/data/tradata/Diff.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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pwiz/data/tradata/.deps/Diff.Tpo -c pwiz/data/tradata/Diff.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/Diff.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/Diff.lo -MD -MP -MF pwiz/data/tradata/.deps/Diff.Tpo -c pwiz/data/tradata/Diff.cpp -o pwiz/data/tradata/Diff.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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pwiz/analysis/frequency/.deps/MagnitudeLorentzianTestData.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/MagnitudeLorentzianTestData.o pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp:28:20: warning: ‘sampleData_’ initialized and declared ‘extern’ extern const char* sampleData_ = ^~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzianTestData.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp -o pwiz/analysis/frequency/MagnitudeLorentzianTestData.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Serializer_FASTA.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" 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-DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Serializer_FASTA.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Serializer_FASTA.lo pwiz/data/proteome/Serializer_FASTA.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Serializer_FASTA.lo -MD -MP -MF pwiz/data/proteome/.deps/Serializer_FASTA.Tpo -c pwiz/data/proteome/Serializer_FASTA.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Serializer_FASTA.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Serializer_FASTA.lo -MD -MP -MF pwiz/data/proteome/.deps/Serializer_FASTA.Tpo -c pwiz/data/proteome/Serializer_FASTA.cpp -o pwiz/data/proteome/Serializer_FASTA.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorNaive.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorNaive.lo pwiz/analysis/frequency/PeakDetectorNaive.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorNaive.Tpo -c pwiz/analysis/frequency/PeakDetectorNaive.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorNaive.o In file included from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: pwiz/analysis/frequency/PeakDetectorNaive.hpp:50:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(double noiseFactor = 5, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.cpp:56:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] PWIZ_API_DECL auto_ptr PeakDetectorNaive::create(double noiseFactor, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::PeakDetectorNaive::create(double, unsigned int)’: pwiz/analysis/frequency/PeakDetectorNaive.cpp:59:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return auto_ptr(new PeakDetectorNaiveImpl(noiseFactor, detectionRadius)); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorNaive.Tpo -c pwiz/analysis/frequency/PeakDetectorNaive.cpp -o pwiz/analysis/frequency/PeakDetectorNaive.o >/dev/null 2>&1 depbase=`echo pwiz/utility/minimxml/SAXParser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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-I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 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pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilterTestData.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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/<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilterTestData.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp -o pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/cv.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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pwiz/data/common/cv.cpp -fPIC -DPIC -o pwiz/data/common/.libs/cv.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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pwiz/data/msdata/.libs/LegacyAdapter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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-D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/LegacyAdapter.lo -MD -MP -MF pwiz/data/msdata/.deps/LegacyAdapter.Tpo -c pwiz/data/msdata/LegacyAdapter.cpp -o pwiz/data/msdata/LegacyAdapter.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/erf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/Reader_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Shimadzu/.libs/Reader_Shimadzu.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/Reader_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp -o pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFT.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFT.o In file included from ./pwiz/analysis/frequency/PeakDetector.hpp:29, from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:109:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(const Config& config); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:61:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr isotopeEnvelopeEstimator_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:62:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr pdmf_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:64:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr createFrequencyData(const MZIntensityPair* begin, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:130:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr createIsotopeEnvelopeEstimator() ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In function ‘std::auto_ptr pwiz::analysis::{anonymous}::createIsotopeEnvelopeEstimator()’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:139:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return auto_ptr(new IsotopeEnvelopeEstimator(config)); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In member function ‘void pwiz::analysis::PeakFamilyDetectorFT::Impl::detect(const MZIntensityPair*, const MZIntensityPair*, std::vector&)’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:169:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fd = createFrequencyData(begin, end); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: At global scope: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:181:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In member function ‘std::auto_ptr pwiz::analysis::PeakFamilyDetectorFT::Impl::createFrequencyData(const MZIntensityPair*, const MZIntensityPair*) const’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:185:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fd(new FrequencyData); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:43, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:42, from /usr/include/boost/lexical_cast.hpp:32, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFT.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/VendorReaderTestHarness.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/VendorReaderTestHarness.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/VendorReaderTestHarness.lo pwiz/utility/misc/VendorReaderTestHarness.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/VendorReaderTestHarness.lo -MD -MP -MF pwiz/utility/misc/.deps/VendorReaderTestHarness.Tpo -c pwiz/utility/misc/VendorReaderTestHarness.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/VendorReaderTestHarness.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/VendorReaderTestHarness.lo -MD -MP -MF pwiz/utility/misc/.deps/VendorReaderTestHarness.Tpo -c pwiz/utility/misc/VendorReaderTestHarness.cpp -o pwiz/utility/misc/VendorReaderTestHarness.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSDataMerger.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/MSDataMerger.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/MSDataMerger.lo pwiz/data/msdata/MSDataMerger.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/MSDataMerger.lo -MD -MP -MF pwiz/data/msdata/.deps/MSDataMerger.Tpo -c pwiz/data/msdata/MSDataMerger.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/MSDataMerger.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/MSDataMerger.lo -MD -MP -MF pwiz/data/msdata/.deps/MSDataMerger.Tpo -c pwiz/data/msdata/MSDataMerger.cpp -o pwiz/data/msdata/MSDataMerger.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/IterationListener.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/IterationListener.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/IterationListener.lo pwiz/utility/misc/IterationListener.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/IterationListener.lo -MD -MP -MF pwiz/utility/misc/.deps/IterationListener.Tpo -c pwiz/utility/misc/IterationListener.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/IterationListener.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/IterationListener.lo -MD -MP -MF pwiz/utility/misc/.deps/IterationListener.Tpo -c pwiz/utility/misc/IterationListener.cpp -o pwiz/utility/misc/IterationListener.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/PrecursorMaskCodec.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/PrecursorMaskCodec.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/PrecursorMaskCodec.lo pwiz/analysis/demux/PrecursorMaskCodec.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/PrecursorMaskCodec.lo -MD -MP -MF pwiz/analysis/demux/.deps/PrecursorMaskCodec.Tpo -c pwiz/analysis/demux/PrecursorMaskCodec.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/PrecursorMaskCodec.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/PrecursorMaskCodec.lo -MD -MP -MF pwiz/analysis/demux/.deps/PrecursorMaskCodec.Tpo -c pwiz/analysis/demux/PrecursorMaskCodec.cpp -o pwiz/analysis/demux/PrecursorMaskCodec.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/ParameterEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/ParameterEstimator.lo pwiz/analysis/frequency/ParameterEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/ParameterEstimator.o In file included from pwiz/analysis/frequency/ParameterEstimator.cpp:24: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(const Function& function, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp:65:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ParameterEstimator::create(const Function& function, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::ParameterEstimator::create(const Function&, const Data&, const Parameters&)’: pwiz/analysis/frequency/ParameterEstimator.cpp:69:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return auto_ptr(new ParameterEstimatorImpl(function, data, initialEstimate)); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -o pwiz/analysis/frequency/ParameterEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/FrequencyDataTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyDataTestData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/FrequencyDataTestData.lo pwiz/data/misc/FrequencyDataTestData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyDataTestData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyDataTestData.Tpo -c pwiz/data/misc/FrequencyDataTestData.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/FrequencyDataTestData.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyDataTestData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyDataTestData.Tpo -c pwiz/data/misc/FrequencyDataTestData.cpp -o pwiz/data/misc/FrequencyDataTestData.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/SpectrumBinaryData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/SpectrumBinaryData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/SpectrumBinaryData.lo pwiz/analysis/passive/SpectrumBinaryData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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pwiz/data/vendor_readers/Bruker/.deps/ChromatogramList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Bruker/.libs/ChromatogramList_Bruker.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/ChromatogramList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/SpectrumList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Agilent/.libs/SpectrumList_Agilent.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/SpectrumList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp -o pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/Parabola.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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-DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Parabola.lo -MD -MP -MF pwiz/utility/math/.deps/Parabola.Tpo -c pwiz/utility/math/Parabola.cpp -fPIC -DPIC -o pwiz/utility/math/.libs/Parabola.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Parabola.lo -MD -MP -MF pwiz/utility/math/.deps/Parabola.Tpo -c pwiz/utility/math/Parabola.cpp -o pwiz/utility/math/Parabola.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/SpectrumList_ABI.Tpo -c pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/.libs/SpectrumList_ABI.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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pwiz/utility/misc/.libs/MSIHandler.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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pwiz/data/msdata/.libs/Serializer_MGF.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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pwiz/utility/misc/.libs/SHA1Calculator.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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-DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-D_FORTIFY_SOURCE=2 -MT pwiz/data/common/ParamTypes.lo -MD -MP -MF pwiz/data/common/.deps/ParamTypes.Tpo -c pwiz/data/common/ParamTypes.cpp -fPIC -DPIC -o pwiz/data/common/.libs/ParamTypes.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/common/ParamTypes.lo -MD -MP -MF pwiz/data/common/.deps/ParamTypes.Tpo -c pwiz/data/common/ParamTypes.cpp -o pwiz/data/common/ParamTypes.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZWindow.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/ChemistryData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" 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-DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/ChemistryData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/ChemistryData.lo pwiz/utility/chemistry/ChemistryData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/ChemistryData.lo -MD -MP -MF pwiz/utility/chemistry/.deps/ChemistryData.Tpo -c pwiz/utility/chemistry/ChemistryData.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/ChemistryData.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/ChemistryData.lo -MD -MP -MF pwiz/utility/chemistry/.deps/ChemistryData.Tpo -c pwiz/utility/chemistry/ChemistryData.cpp -o pwiz/utility/chemistry/ChemistryData.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeTable.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeTable.lo pwiz/utility/chemistry/IsotopeTable.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeTable.Tpo -c pwiz/utility/chemistry/IsotopeTable.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeTable.o In file included from pwiz/utility/chemistry/IsotopeTable.cpp:26: pwiz/utility/chemistry/IsotopeTable.hpp:50:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeTable.hpp:29, from pwiz/utility/chemistry/IsotopeTable.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeTable.Tpo -c pwiz/utility/chemistry/IsotopeTable.cpp -o pwiz/utility/chemistry/IsotopeTable.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/DelimReader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DelimReader.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/DelimReader.lo pwiz/data/identdata/DelimReader.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DelimReader.lo -MD -MP -MF pwiz/data/identdata/.deps/DelimReader.Tpo -c pwiz/data/identdata/DelimReader.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/DelimReader.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DelimReader.lo -MD -MP -MF pwiz/data/identdata/.deps/DelimReader.Tpo -c pwiz/data/identdata/DelimReader.cpp -o pwiz/data/identdata/DelimReader.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionAnalyzer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionAnalyzer.Tpo -c pwiz/analysis/passive/RegionAnalyzer.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionAnalyzer.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 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/<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionAnalyzer.Tpo -c pwiz/analysis/passive/RegionAnalyzer.cpp -o pwiz/analysis/passive/RegionAnalyzer.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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pwiz/analysis/.deps/Version.Tpo -c pwiz/analysis/Version.cpp -fPIC -DPIC -o pwiz/analysis/.libs/Version.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/Version.lo -MD -MP -MF pwiz/analysis/.deps/Version.Tpo -c pwiz/analysis/Version.cpp -o pwiz/analysis/Version.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_TitleMaker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_TitleMaker.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_TitleMaker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/examples.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" 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-c -o pwiz/data/msdata/examples.lo pwiz/data/msdata/examples.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_pepXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Serializer_pepXML.lo pwiz/data/identdata/Serializer_pepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/TabReader.lo -MD -MP -MF pwiz/utility/misc/.deps/TabReader.Tpo -c pwiz/utility/misc/TabReader.cpp -o pwiz/utility/misc/TabReader.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_MSn.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_MSn.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_MSn.lo pwiz/data/msdata/Serializer_MSn.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_MSn.Tpo -c pwiz/data/msdata/Serializer_MSn.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_MSn.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_MSn.Tpo -c pwiz/data/msdata/Serializer_MSn.cpp -o pwiz/data/msdata/Serializer_MSn.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/Serializer_traML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/Serializer_traML.lo -MD -MP -MF pwiz/data/tradata/.deps/Serializer_traML.Tpo -c pwiz/data/tradata/Serializer_traML.cpp -o pwiz/data/tradata/Serializer_traML.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/PeakData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/PeakData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/PeakData.lo pwiz/data/misc/PeakData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/PeakData.lo -MD -MP -MF pwiz/data/misc/.deps/PeakData.Tpo -c pwiz/data/misc/PeakData.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/PeakData.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/PeakData.lo -MD -MP -MF pwiz/data/misc/.deps/PeakData.Tpo -c pwiz/data/misc/PeakData.cpp -o pwiz/data/misc/PeakData.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorSimple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorSimple.lo pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:45:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(Type type = Parabola, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:63:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] PWIZ_API_DECL auto_ptr FrequencyEstimatorSimple::create(Type type, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::FrequencyEstimatorSimple::create(pwiz::frequency::FrequencyEstimatorSimple::Type, unsigned int)’: pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:66:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return auto_ptr( ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -o pwiz/analysis/frequency/FrequencyEstimatorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakFilter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakFilter.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakFilter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/AminoAcid.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/AminoAcid.lo -MD -MP -MF pwiz/data/proteome/.deps/AminoAcid.Tpo -c pwiz/data/proteome/AminoAcid.cpp -o pwiz/data/proteome/AminoAcid.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/IdentData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/IdentData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/IdentData.lo pwiz/data/identdata/IdentData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/IdentData.lo -MD -MP -MF pwiz/data/identdata/.deps/IdentData.Tpo -c pwiz/data/identdata/IdentData.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/IdentData.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/IdentData.lo -MD -MP -MF pwiz/data/identdata/.deps/IdentData.Tpo -c pwiz/data/identdata/IdentData.cpp -o pwiz/data/identdata/IdentData.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/FrequencyData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/FrequencyData.lo pwiz/data/misc/FrequencyData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyData.Tpo -c pwiz/data/misc/FrequencyData.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/FrequencyData.o In file included from pwiz/data/misc/FrequencyData.cpp:26: pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from pwiz/data/misc/SampleDatum.hpp:30, from pwiz/data/misc/FrequencyData.hpp:29, from pwiz/data/misc/FrequencyData.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyData.Tpo -c pwiz/data/misc/FrequencyData.cpp -o pwiz/data/misc/FrequencyData.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeFromIsotope.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 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libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Reader.lo -MD -MP -MF pwiz/data/msdata/.deps/Reader.Tpo -c pwiz/data/msdata/Reader.cpp -o pwiz/data/msdata/Reader.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Pep2MzIdent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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-I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Pep2MzIdent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Pep2MzIdent.lo pwiz/data/identdata/Pep2MzIdent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Pep2MzIdent.lo -MD -MP -MF pwiz/data/identdata/.deps/Pep2MzIdent.Tpo -c pwiz/data/identdata/Pep2MzIdent.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Pep2MzIdent.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Pep2MzIdent.lo -MD -MP -MF pwiz/data/identdata/.deps/Pep2MzIdent.Tpo -c pwiz/data/identdata/Pep2MzIdent.cpp -o pwiz/data/identdata/Pep2MzIdent.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSDataFile.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/MSDataFile.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/MSDataFile.lo pwiz/data/msdata/MSDataFile.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/MSDataFile.lo -MD -MP -MF pwiz/data/msdata/.deps/MSDataFile.Tpo -c pwiz/data/msdata/MSDataFile.cpp -o pwiz/data/msdata/MSDataFile.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/MS2Deisotoper.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/MS2Deisotoper.lo pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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-DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2Deisotoper.Tpo -c pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp -o pwiz/analysis/spectrum_processing/MS2Deisotoper.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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pwiz/data/msdata/.libs/DefaultReaderList.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/msdata/.deps/DefaultReaderList.Tpo -c pwiz/data/msdata/DefaultReaderList.cpp -o pwiz/data/msdata/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/SavitzkyGolaySmoother.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/SavitzkyGolaySmoother.lo pwiz/analysis/common/SavitzkyGolaySmoother.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/SavitzkyGolaySmoother.Tpo -c pwiz/analysis/common/SavitzkyGolaySmoother.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/SavitzkyGolaySmoother.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/SavitzkyGolaySmoother.Tpo -c pwiz/analysis/common/SavitzkyGolaySmoother.cpp -o pwiz/analysis/common/SavitzkyGolaySmoother.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_mzML.lo pwiz/data/msdata/SpectrumList_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzML.Tpo -c pwiz/data/msdata/SpectrumList_mzML.cpp -o pwiz/data/msdata/SpectrumList_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Reader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 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-DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideIDMap.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideIDMap.Tpo -c pwiz/analysis/peptideid/PeptideIDMap.cpp -o pwiz/analysis/peptideid/PeptideIDMap.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ScanSummer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ScanSummer.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ScanSummer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilter.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilter.o In file included from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:109:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] static std::auto_ptr create(const Config& config); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:116:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::PeakDetectorMatchedFilter::create(const pwiz::frequency::PeakDetectorMatchedFilter::Config&)’: pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:119:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return auto_ptr(new PeakDetectorMatchedFilterImpl(config)); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilter.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp -o pwiz/analysis/frequency/PeakDetectorMatchedFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Version.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Version.lo pwiz/data/proteome/Version.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Version.lo -MD -MP -MF pwiz/data/proteome/.deps/Version.Tpo -c pwiz/data/proteome/Version.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Version.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Version.lo -MD -MP -MF pwiz/data/proteome/.deps/Version.Tpo -c pwiz/data/proteome/Version.cpp -o pwiz/data/proteome/Version.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/IO.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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-DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker_Detail.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker_Detail.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker_Detail.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp -o pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/SpectrumList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Bruker/.libs/SpectrumList_Bruker.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/SpectrumList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/ZeroSampleFiller.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/ZeroSampleFiller.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/ZeroSampleFiller.lo pwiz/analysis/common/ZeroSampleFiller.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/ZeroSampleFiller.lo -MD -MP -MF pwiz/analysis/common/.deps/ZeroSampleFiller.Tpo -c pwiz/analysis/common/ZeroSampleFiller.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/ZeroSampleFiller.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/ZeroSampleFiller.lo -MD -MP -MF pwiz/analysis/common/.deps/ZeroSampleFiller.Tpo -c pwiz/analysis/common/ZeroSampleFiller.cpp -o pwiz/analysis/common/ZeroSampleFiller.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Version.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Version.lo pwiz/data/identdata/Version.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Version.lo -MD -MP -MF pwiz/data/identdata/.deps/Version.Tpo -c pwiz/data/identdata/Version.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Version.o libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Version.lo -MD -MP -MF pwiz/data/identdata/.deps/Version.Tpo -c pwiz/data/identdata/Version.cpp -o pwiz/data/identdata/Version.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureModeler.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureModeler.lo pwiz/analysis/peakdetect/FeatureModeler.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureModeler.Tpo -c pwiz/analysis/peakdetect/FeatureModeler.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureModeler.o In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr impl_; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" "-DPACKAGE_STRING=\"libpwiz 3.0.10827\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -I./libraries/libsvm-3.0 -Ipwiz/data/msdata/ramp -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/eigen3-nnls -I /<>/debian/build/libraries/CSpline -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureModeler.Tpo -c pwiz/analysis/peakdetect/FeatureModeler.cpp -o pwiz/analysis/peakdetect/FeatureModeler.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -version-info 3:0:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libpwiz.la -rpath /usr/lib ./libraries/boost_aux/libs/nowide/src/iostream.lo ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo ./pwiz/data/msdata/SpectrumList_MGF.lo pwiz/data/tradata/Reader.lo ./pwiz/utility/chemistry/IsotopeCalculator.lo ./pwiz/data/msdata/Serializer_mzXML.lo ./pwiz/data/msdata/MSData.lo pwiz/data/tradata/DefaultReaderList.lo ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo ./pwiz/analysis/passive/RunSummary.lo ./pwiz/data/msdata/SpectrumList_mzXML.lo ./pwiz/data/msdata/Index_mzML.lo ./pwiz/utility/proteome/IPIFASTADatabase.lo ./pwiz/utility/chemistry/MZTolerance.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo pwiz/Version.lo ./pwiz/data/msdata/Serializer_mzML.lo ./pwiz/utility/minimxml/XMLWriter.lo ./pwiz/analysis/frequency/TruncatedLorentzianParameters.lo ./pwiz/analysis/peakdetect/PeakFitter.lo ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo ./pwiz/analysis/peptideid/PeptideID_pepXML.lo ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo pwiz_tools/common/MSDataAnalyzerApplication.lo ./pwiz/analysis/demux/DemuxSolver.lo ./pwiz/analysis/peakdetect/PeakFinder.lo ./pwiz/data/msdata/IO.lo ./pwiz/analysis/peakdetect/PeakFamilyDetector.lo ./pwiz/utility/misc/Filesystem.lo ./pwiz/data/common/MemoryIndex.lo ./pwiz/data/identdata/IdentDataFile.lo ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo ./pwiz/data/identdata/DelimWriter.lo ./pwiz/utility/misc/SHA1.lo ./pwiz/analysis/demux/MSXDemultiplexer.lo ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo ./pwiz/analysis/demux/CubicHermiteSpline.lo ./pwiz/analysis/passive/RegionTIC.lo ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo ./pwiz/analysis/common/LocalMaximumPeakDetector.lo ./pwiz/data/proteome/ProteinListCache.lo ./pwiz/data/vendor_readers/ExtendedReaderList.lo pwiz/data/tradata/TraData.lo ./pwiz/analysis/peakdetect/MZRTField.lo ./pwiz/analysis/peakdetect/PeakelGrower.lo ./pwiz/analysis/common/ExtraZeroSamplesFilter.lo ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo ./pwiz/data/msdata/SpectrumInfo.lo ./libraries/CSpline/CSpline.lo ./pwiz/analysis/demux/MatrixIO.lo ./pwiz/analysis/peakdetect/Noise.lo ./pwiz/analysis/passive/TabularConfig.lo ./pwiz/data/misc/MinimumPepXML.lo ./pwiz/data/proteome/Peptide.lo ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo ./pwiz/data/proteome/Reader_FASTA.lo ./pwiz/utility/chemistry/Chemistry.lo ./pwiz/analysis/peptideid/PeptideID_flat.lo ./pwiz/data/identdata/Serializer_Text.lo ./pwiz/data/identdata/Diff.lo ./pwiz/analysis/passive/MSDataCache.lo ./pwiz/data/msdata/BinaryDataEncoder.lo pwiz/data/tradata/IO.lo ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.lo pwiz/analysis/proteome_processing/ProteinListFactory.lo ./pwiz/analysis/passive/SpectrumTable.lo ./pwiz/analysis/demux/DemuxDebugWriter.lo pwiz/data/tradata/Version.lo ./pwiz/data/msdata/SpectrumList_MSn.lo ./pwiz/analysis/passive/PepXMLCat.lo ./pwiz/data/msdata/SpectrumIterator.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo ./pwiz/utility/misc/random_access_compressed_ifstream.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo ./pwiz/data/msdata/Version.lo ./pwiz/data/msdata/SpectrumListCache.lo ./pwiz/data/msdata/References.lo ./pwiz/analysis/common/WhittakerSmoother.lo ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo pwiz/data/tradata/References.lo ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo pwiz/data/tradata/examples.lo ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo ./pwiz/data/common/Unimod.lo ./pwiz/analysis/peakdetect/PeakelPicker.lo ./pwiz/analysis/peakdetect/FeatureDetectorSimple.lo ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo ./pwiz/data/common/CVTranslator.lo ./pwiz/analysis/demux/SpectrumPeakExtractor.lo ./pwiz/data/proteome/Digestion.lo ./pwiz/analysis/passive/RegionSlice.lo ./pwiz/data/proteome/ProteomeDataFile.lo ./libraries/libsvm-3.0/svm.lo ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo ./pwiz/analysis/spectrum_processing/ThresholdFilter.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo ./pwiz/data/vendor_readers/Waters/Reader_Waters.lo ./pwiz/analysis/passive/MSDataAnalyzer.lo ./pwiz/data/identdata/Serializer_mzid.lo ./pwiz/data/proteome/ProteomeData.lo ./pwiz/data/msdata/SpectrumWorkerThreads.lo ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo ./pwiz/analysis/demux/DemuxDebugReader.lo ./pwiz/data/proteome/Modification.lo ./pwiz/analysis/passive/MetadataReporter.lo ./pwiz/data/identdata/DefaultReaderList.lo ./pwiz/analysis/spectrum_processing/SpectrumListFactory.lo pwiz/analysis/proteome_processing/ProteinList_Filter.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo ./pwiz/data/msdata/SpectrumList_BTDX.lo ./pwiz/data/proteome/DefaultReaderList.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo ./pwiz/analysis/passive/RegionSIC.lo ./pwiz/data/proteome/examples.lo ./pwiz/data/identdata/Serializer_protXML.lo ./pwiz/data/msdata/Diff.lo ./pwiz/data/identdata/Reader.lo ./pwiz/data/msdata/ChromatogramList_mzML.lo ./pwiz/data/vendor_readers/ABI/Reader_ABI.lo ./pwiz/analysis/demux/OverlapDemultiplexer.lo ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo ./pwiz/utility/misc/Base64.lo ./pwiz/analysis/frequency/MagnitudeLorentzian.lo ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo ./pwiz/data/common/BinaryIndexStream.lo ./pwiz/analysis/spectrum_processing/SpectrumList_3D.lo ./pwiz/utility/misc/IntegerSet.lo ./pwiz/analysis/demux/DemuxHelpers.lo pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo ./pwiz/data/msdata/MSNumpress.lo ./pwiz/utility/math/Stats.lo ./pwiz/analysis/frequency/TruncatedLorentzian.lo pwiz/data/tradata/Diff.lo ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo ./pwiz/data/proteome/Serializer_FASTA.lo ./pwiz/analysis/frequency/PeakDetectorNaive.lo ./pwiz/utility/minimxml/SAXParser.lo ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo ./pwiz/data/common/cv.lo ./pwiz/data/msdata/LegacyAdapter.lo ./pwiz/utility/math/erf.lo ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo ./pwiz/utility/misc/VendorReaderTestHarness.lo ./pwiz/data/msdata/MSDataMerger.lo ./pwiz/utility/misc/IterationListener.lo ./pwiz/analysis/demux/PrecursorMaskCodec.lo ./pwiz/analysis/frequency/ParameterEstimator.lo ./pwiz/data/misc/FrequencyDataTestData.lo ./pwiz/analysis/passive/SpectrumBinaryData.lo ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo ./pwiz/utility/math/Parabola.lo ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo ./pwiz/utility/misc/MSIHandler.lo ./pwiz/data/msdata/Serializer_MGF.lo ./pwiz/utility/misc/SHA1Calculator.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo ./pwiz/data/identdata/KwCVMap.lo ./pwiz/data/identdata/References.lo ./pwiz/data/common/ParamTypes.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo ./pwiz/utility/chemistry/ChemistryData.lo ./pwiz/utility/chemistry/IsotopeTable.lo ./pwiz/data/identdata/DelimReader.lo ./pwiz/analysis/passive/RegionAnalyzer.lo ./pwiz/analysis/Version.lo ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo ./pwiz/data/msdata/examples.lo ./pwiz/data/common/diff_std.lo ./pwiz/data/common/obo.lo ./pwiz/analysis/common/CwtPeakDetector.lo ./pwiz/analysis/peakdetect/PeakExtractor.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo ./pwiz/data/identdata/examples.lo ./pwiz/data/identdata/Serializer_pepXML.lo ./pwiz/utility/misc/TabReader.lo ./pwiz/data/msdata/Serializer_MSn.lo pwiz/data/tradata/Serializer_traML.lo ./pwiz/data/misc/PeakData.lo ./pwiz/analysis/frequency/FrequencyEstimatorSimple.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo ./pwiz/data/proteome/AminoAcid.lo ./pwiz/data/identdata/IdentData.lo ./pwiz/data/misc/FrequencyData.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo ./pwiz/data/proteome/Diff.lo ./pwiz/data/msdata/Reader.lo ./pwiz/data/identdata/Pep2MzIdent.lo ./pwiz/data/msdata/MSDataFile.lo ./pwiz/analysis/spectrum_processing/MS2Deisotoper.lo ./pwiz/data/msdata/DefaultReaderList.lo ./pwiz/analysis/common/SavitzkyGolaySmoother.lo ./pwiz/data/msdata/SpectrumList_mzML.lo ./pwiz/data/proteome/Reader.lo ./pwiz/analysis/peptideid/PeptideIDMap.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo ./pwiz/data/proteome/Version.lo ./pwiz/data/identdata/IO.lo pwiz/data/tradata/TraDataFile.lo ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo ./pwiz/analysis/common/ZeroSampleFiller.lo ./pwiz/data/identdata/Version.lo ./pwiz/analysis/peakdetect/FeatureModeler.lo -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o ./libraries/boost_aux/libs/nowide/src/.libs/iostream.o ./pwiz/data/vendor_readers/ABI/T2D/.libs/Reader_ABI_T2D.o ./pwiz/data/msdata/.libs/SpectrumList_MGF.o pwiz/data/tradata/.libs/Reader.o ./pwiz/utility/chemistry/.libs/IsotopeCalculator.o ./pwiz/data/msdata/.libs/Serializer_mzXML.o ./pwiz/data/msdata/.libs/MSData.o pwiz/data/tradata/.libs/DefaultReaderList.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_IonMobility.o ./pwiz/data/vendor_readers/Waters/.libs/SpectrumList_Waters.o ./pwiz/analysis/passive/.libs/RunSummary.o ./pwiz/data/msdata/.libs/SpectrumList_mzXML.o ./pwiz/data/msdata/.libs/Index_mzML.o ./pwiz/utility/proteome/.libs/IPIFASTADatabase.o ./pwiz/utility/chemistry/.libs/MZTolerance.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRefine.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o pwiz/.libs/Version.o ./pwiz/data/msdata/.libs/Serializer_mzML.o ./pwiz/utility/minimxml/.libs/XMLWriter.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzianParameters.o ./pwiz/analysis/peakdetect/.libs/PeakFitter.o ./pwiz/data/vendor_readers/Thermo/.libs/ChromatogramList_Thermo.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZRefiner.o ./pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o ./pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakPicker.o pwiz_tools/common/.libs/MSDataAnalyzerApplication.o ./pwiz/analysis/demux/.libs/DemuxSolver.o ./pwiz/analysis/peakdetect/.libs/PeakFinder.o ./pwiz/data/msdata/.libs/IO.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetector.o ./pwiz/utility/misc/.libs/Filesystem.o ./pwiz/data/common/.libs/MemoryIndex.o ./pwiz/data/identdata/.libs/IdentDataFile.o ./pwiz/data/vendor_readers/UIMF/.libs/Reader_UIMF.o ./pwiz/data/identdata/.libs/DelimWriter.o ./pwiz/utility/misc/.libs/SHA1.o ./pwiz/analysis/demux/.libs/MSXDemultiplexer.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o ./pwiz/analysis/demux/.libs/CubicHermiteSpline.o ./pwiz/analysis/passive/.libs/RegionTIC.o ./pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker.o ./pwiz/analysis/common/.libs/LocalMaximumPeakDetector.o ./pwiz/data/proteome/.libs/ProteinListCache.o ./pwiz/data/vendor_readers/.libs/ExtendedReaderList.o pwiz/data/tradata/.libs/TraData.o ./pwiz/analysis/peakdetect/.libs/MZRTField.o ./pwiz/analysis/peakdetect/.libs/PeakelGrower.o ./pwiz/analysis/common/.libs/ExtraZeroSamplesFilter.o ./pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o ./pwiz/data/msdata/.libs/SpectrumInfo.o ./libraries/CSpline/.libs/CSpline.o ./pwiz/analysis/demux/.libs/MatrixIO.o ./pwiz/analysis/peakdetect/.libs/Noise.o ./pwiz/analysis/passive/.libs/TabularConfig.o ./pwiz/data/misc/.libs/MinimumPepXML.o ./pwiz/data/proteome/.libs/Peptide.o ./pwiz/data/vendor_readers/UIMF/.libs/SpectrumList_UIMF.o ./pwiz/data/vendor_readers/Agilent/.libs/Reader_Agilent.o ./pwiz/data/proteome/.libs/Reader_FASTA.o ./pwiz/utility/chemistry/.libs/Chemistry.o ./pwiz/analysis/peptideid/.libs/PeptideID_flat.o ./pwiz/data/identdata/.libs/Serializer_Text.o ./pwiz/data/identdata/.libs/Diff.o ./pwiz/analysis/passive/.libs/MSDataCache.o ./pwiz/data/msdata/.libs/BinaryDataEncoder.o pwiz/data/tradata/.libs/IO.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFTTestData.o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o ./pwiz/analysis/passive/.libs/SpectrumTable.o ./pwiz/analysis/demux/.libs/DemuxDebugWriter.o pwiz/data/tradata/.libs/Version.o ./pwiz/data/msdata/.libs/SpectrumList_MSn.o ./pwiz/analysis/passive/.libs/PepXMLCat.o ./pwiz/data/msdata/.libs/SpectrumIterator.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Demux.o ./pwiz/utility/misc/.libs/random_access_compressed_ifstream.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Smoother.o ./pwiz/data/vendor_readers/Shimadzu/.libs/ChromatogramList_Shimadzu.o ./pwiz/data/msdata/.libs/Version.o ./pwiz/data/msdata/.libs/SpectrumListCache.o ./pwiz/data/msdata/.libs/References.o ./pwiz/analysis/common/.libs/WhittakerSmoother.o ./pwiz/data/vendor_readers/ABI/T2D/.libs/SpectrumList_ABI_T2D.o pwiz/data/tradata/.libs/References.o ./pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o pwiz/data/tradata/.libs/examples.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_LockmassRefiner.o ./pwiz/data/common/.libs/Unimod.o ./pwiz/analysis/peakdetect/.libs/PeakelPicker.o ./pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o ./pwiz/analysis/spectrum_processing/.libs/PrecursorMassFilter.o ./pwiz/data/common/.libs/CVTranslator.o ./pwiz/analysis/demux/.libs/SpectrumPeakExtractor.o ./pwiz/data/proteome/.libs/Digestion.o ./pwiz/analysis/passive/.libs/RegionSlice.o ./pwiz/data/proteome/.libs/ProteomeDataFile.o ./libraries/libsvm-3.0/.libs/svm.o ./pwiz/data/vendor_readers/Waters/.libs/ChromatogramList_Waters.o ./pwiz/analysis/spectrum_processing/.libs/ThresholdFilter.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Filter.o ./pwiz/data/vendor_readers/Waters/.libs/Reader_Waters.o ./pwiz/analysis/passive/.libs/MSDataAnalyzer.o ./pwiz/data/identdata/.libs/Serializer_mzid.o ./pwiz/data/proteome/.libs/ProteomeData.o ./pwiz/data/msdata/.libs/SpectrumWorkerThreads.o ./pwiz/analysis/spectrum_processing/.libs/MS2NoiseFilter.o ./pwiz/analysis/demux/.libs/DemuxDebugReader.o ./pwiz/data/proteome/.libs/Modification.o ./pwiz/analysis/passive/.libs/MetadataReporter.o ./pwiz/data/identdata/.libs/DefaultReaderList.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumListFactory.o pwiz/analysis/proteome_processing/.libs/ProteinList_Filter.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o ./pwiz/data/msdata/.libs/SpectrumList_BTDX.o ./pwiz/data/proteome/.libs/DefaultReaderList.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MetadataFixer.o ./pwiz/analysis/passive/.libs/RegionSIC.o ./pwiz/data/proteome/.libs/examples.o ./pwiz/data/identdata/.libs/Serializer_protXML.o ./pwiz/data/msdata/.libs/Diff.o ./pwiz/data/identdata/.libs/Reader.o ./pwiz/data/msdata/.libs/ChromatogramList_mzML.o ./pwiz/data/vendor_readers/ABI/.libs/Reader_ABI.o ./pwiz/analysis/demux/.libs/OverlapDemultiplexer.o ./pwiz/data/vendor_readers/Thermo/.libs/SpectrumList_Thermo.o ./pwiz/data/vendor_readers/ABI/.libs/ChromatogramList_ABI.o ./pwiz/utility/misc/.libs/Base64.o ./pwiz/analysis/frequency/.libs/MagnitudeLorentzian.o ./pwiz/data/vendor_readers/Agilent/.libs/ChromatogramList_Agilent.o ./pwiz/data/common/.libs/BinaryIndexStream.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_3D.o ./pwiz/utility/misc/.libs/IntegerSet.o ./pwiz/analysis/demux/.libs/DemuxHelpers.o pwiz/analysis/proteome_processing/.libs/ProteinList_DecoyGenerator.o ./pwiz/data/msdata/.libs/MSNumpress.o ./pwiz/utility/math/.libs/Stats.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzian.o pwiz/data/tradata/.libs/Diff.o ./pwiz/analysis/frequency/.libs/MagnitudeLorentzianTestData.o ./pwiz/data/proteome/.libs/Serializer_FASTA.o ./pwiz/analysis/frequency/.libs/PeakDetectorNaive.o ./pwiz/utility/minimxml/.libs/SAXParser.o ./pwiz/data/vendor_readers/Thermo/.libs/Reader_Thermo.o ./pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilterTestData.o ./pwiz/data/common/.libs/cv.o ./pwiz/data/msdata/.libs/LegacyAdapter.o ./pwiz/utility/math/.libs/erf.o ./pwiz/data/vendor_readers/Shimadzu/.libs/Reader_Shimadzu.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFT.o ./pwiz/utility/misc/.libs/VendorReaderTestHarness.o ./pwiz/data/msdata/.libs/MSDataMerger.o ./pwiz/utility/misc/.libs/IterationListener.o ./pwiz/analysis/demux/.libs/PrecursorMaskCodec.o ./pwiz/analysis/frequency/.libs/ParameterEstimator.o ./pwiz/data/misc/.libs/FrequencyDataTestData.o ./pwiz/analysis/passive/.libs/SpectrumBinaryData.o ./pwiz/data/vendor_readers/Bruker/.libs/ChromatogramList_Bruker.o ./pwiz/data/vendor_readers/Agilent/.libs/SpectrumList_Agilent.o ./pwiz/utility/math/.libs/Parabola.o ./pwiz/data/vendor_readers/ABI/.libs/SpectrumList_ABI.o ./pwiz/analysis/spectrum_processing/.libs/PrecursorRecalculatorDefault.o ./pwiz/utility/misc/.libs/MSIHandler.o ./pwiz/data/msdata/.libs/Serializer_MGF.o ./pwiz/utility/misc/.libs/SHA1Calculator.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Sorter.o ./pwiz/data/identdata/.libs/KwCVMap.o ./pwiz/data/identdata/.libs/References.o ./pwiz/data/common/.libs/ParamTypes.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZWindow.o ./pwiz/utility/chemistry/.libs/ChemistryData.o ./pwiz/utility/chemistry/.libs/IsotopeTable.o ./pwiz/data/identdata/.libs/DelimReader.o ./pwiz/analysis/passive/.libs/RegionAnalyzer.o ./pwiz/analysis/.libs/Version.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_TitleMaker.o ./pwiz/data/msdata/.libs/examples.o ./pwiz/data/common/.libs/diff_std.o ./pwiz/data/common/.libs/obo.o ./pwiz/analysis/common/.libs/CwtPeakDetector.o ./pwiz/analysis/peakdetect/.libs/PeakExtractor.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ZeroSamplesFilter.o ./pwiz/data/identdata/.libs/examples.o ./pwiz/data/identdata/.libs/Serializer_pepXML.o ./pwiz/utility/misc/.libs/TabReader.o ./pwiz/data/msdata/.libs/Serializer_MSn.o pwiz/data/tradata/.libs/Serializer_traML.o ./pwiz/data/misc/.libs/PeakData.o ./pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakFilter.o ./pwiz/data/proteome/.libs/AminoAcid.o ./pwiz/data/identdata/.libs/IdentData.o ./pwiz/data/misc/.libs/FrequencyData.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeFromIsotope.o ./pwiz/data/proteome/.libs/Diff.o ./pwiz/data/msdata/.libs/Reader.o ./pwiz/data/identdata/.libs/Pep2MzIdent.o ./pwiz/data/msdata/.libs/MSDataFile.o ./pwiz/analysis/spectrum_processing/.libs/MS2Deisotoper.o ./pwiz/data/msdata/.libs/DefaultReaderList.o ./pwiz/analysis/common/.libs/SavitzkyGolaySmoother.o ./pwiz/data/msdata/.libs/SpectrumList_mzML.o ./pwiz/data/proteome/.libs/Reader.o ./pwiz/analysis/peptideid/.libs/PeptideIDMap.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ScanSummer.o ./pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilter.o ./pwiz/data/proteome/.libs/Version.o ./pwiz/data/identdata/.libs/IO.o pwiz/data/tradata/.libs/TraDataFile.o ./pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker_Detail.o ./pwiz/data/vendor_readers/Bruker/.libs/SpectrumList_Bruker.o ./pwiz/analysis/common/.libs/ZeroSampleFiller.o ./pwiz/data/identdata/.libs/Version.o ./pwiz/analysis/peakdetect/.libs/FeatureModeler.o -L/usr/lib/x86_64-linux-gnu -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libpwiz.so.3 -o .libs/libpwiz.so.3.0.0 libtool: link: (cd ".libs" && rm -f "libpwiz.so.3" && ln -s "libpwiz.so.3.0.0" "libpwiz.so.3") libtool: link: (cd ".libs" && rm -f "libpwiz.so" && ln -s "libpwiz.so.3.0.0" "libpwiz.so") copying selected object files to avoid basename conflicts... libtool: link: ln pwiz/data/tradata/IO.o .libs/libpwiz.lax/lt1-IO.o || cp pwiz/data/tradata/IO.o .libs/libpwiz.lax/lt1-IO.o libtool: link: ln pwiz/data/tradata/Version.o .libs/libpwiz.lax/lt2-Version.o || cp pwiz/data/tradata/Version.o .libs/libpwiz.lax/lt2-Version.o libtool: link: ln ./pwiz/data/msdata/Version.o .libs/libpwiz.lax/lt3-Version.o || cp ./pwiz/data/msdata/Version.o .libs/libpwiz.lax/lt3-Version.o libtool: link: ln pwiz/data/tradata/References.o .libs/libpwiz.lax/lt4-References.o || cp pwiz/data/tradata/References.o .libs/libpwiz.lax/lt4-References.o libtool: link: ln ./pwiz/data/identdata/DefaultReaderList.o .libs/libpwiz.lax/lt5-DefaultReaderList.o || cp ./pwiz/data/identdata/DefaultReaderList.o .libs/libpwiz.lax/lt5-DefaultReaderList.o libtool: link: ln ./pwiz/data/proteome/DefaultReaderList.o .libs/libpwiz.lax/lt6-DefaultReaderList.o || cp ./pwiz/data/proteome/DefaultReaderList.o .libs/libpwiz.lax/lt6-DefaultReaderList.o libtool: link: ln ./pwiz/data/proteome/examples.o .libs/libpwiz.lax/lt7-examples.o || cp ./pwiz/data/proteome/examples.o .libs/libpwiz.lax/lt7-examples.o libtool: link: ln ./pwiz/data/msdata/Diff.o .libs/libpwiz.lax/lt8-Diff.o || cp ./pwiz/data/msdata/Diff.o .libs/libpwiz.lax/lt8-Diff.o libtool: link: ln ./pwiz/data/identdata/Reader.o .libs/libpwiz.lax/lt9-Reader.o || cp ./pwiz/data/identdata/Reader.o .libs/libpwiz.lax/lt9-Reader.o libtool: link: ln pwiz/data/tradata/Diff.o .libs/libpwiz.lax/lt10-Diff.o || cp pwiz/data/tradata/Diff.o .libs/libpwiz.lax/lt10-Diff.o libtool: link: ln ./pwiz/data/identdata/References.o .libs/libpwiz.lax/lt11-References.o || cp ./pwiz/data/identdata/References.o .libs/libpwiz.lax/lt11-References.o libtool: link: ln ./pwiz/analysis/Version.o .libs/libpwiz.lax/lt12-Version.o || cp ./pwiz/analysis/Version.o .libs/libpwiz.lax/lt12-Version.o libtool: link: ln ./pwiz/data/msdata/examples.o .libs/libpwiz.lax/lt13-examples.o || cp ./pwiz/data/msdata/examples.o .libs/libpwiz.lax/lt13-examples.o libtool: link: ln ./pwiz/data/identdata/examples.o .libs/libpwiz.lax/lt14-examples.o || cp ./pwiz/data/identdata/examples.o .libs/libpwiz.lax/lt14-examples.o libtool: link: ln ./pwiz/data/proteome/Diff.o .libs/libpwiz.lax/lt15-Diff.o || cp ./pwiz/data/proteome/Diff.o .libs/libpwiz.lax/lt15-Diff.o libtool: link: ln ./pwiz/data/msdata/Reader.o .libs/libpwiz.lax/lt16-Reader.o || cp ./pwiz/data/msdata/Reader.o .libs/libpwiz.lax/lt16-Reader.o libtool: link: ln ./pwiz/data/msdata/DefaultReaderList.o .libs/libpwiz.lax/lt17-DefaultReaderList.o || cp ./pwiz/data/msdata/DefaultReaderList.o .libs/libpwiz.lax/lt17-DefaultReaderList.o libtool: link: ln ./pwiz/data/proteome/Reader.o .libs/libpwiz.lax/lt18-Reader.o || cp ./pwiz/data/proteome/Reader.o .libs/libpwiz.lax/lt18-Reader.o libtool: link: ln ./pwiz/data/proteome/Version.o .libs/libpwiz.lax/lt19-Version.o || cp ./pwiz/data/proteome/Version.o .libs/libpwiz.lax/lt19-Version.o libtool: link: ln ./pwiz/data/identdata/IO.o .libs/libpwiz.lax/lt20-IO.o || cp ./pwiz/data/identdata/IO.o .libs/libpwiz.lax/lt20-IO.o libtool: link: ln ./pwiz/data/identdata/Version.o .libs/libpwiz.lax/lt21-Version.o || cp ./pwiz/data/identdata/Version.o .libs/libpwiz.lax/lt21-Version.o libtool: link: ar cru .libs/libpwiz.a ./libraries/boost_aux/libs/nowide/src/iostream.o ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.o ./pwiz/data/msdata/SpectrumList_MGF.o pwiz/data/tradata/Reader.o ./pwiz/utility/chemistry/IsotopeCalculator.o ./pwiz/data/msdata/Serializer_mzXML.o ./pwiz/data/msdata/MSData.o pwiz/data/tradata/DefaultReaderList.o ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.o ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o ./pwiz/analysis/passive/RunSummary.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/utility/proteome/IPIFASTADatabase.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.o ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o pwiz/Version.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/utility/minimxml/XMLWriter.o ./pwiz/analysis/frequency/TruncatedLorentzianParameters.o ./pwiz/analysis/peakdetect/PeakFitter.o ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.o ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o ./pwiz/analysis/peptideid/PeptideID_pepXML.o ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.o pwiz_tools/common/MSDataAnalyzerApplication.o ./pwiz/analysis/demux/DemuxSolver.o ./pwiz/analysis/peakdetect/PeakFinder.o ./pwiz/data/msdata/IO.o ./pwiz/analysis/peakdetect/PeakFamilyDetector.o ./pwiz/utility/misc/Filesystem.o ./pwiz/data/common/MemoryIndex.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.o ./pwiz/data/identdata/DelimWriter.o ./pwiz/utility/misc/SHA1.o ./pwiz/analysis/demux/MSXDemultiplexer.o ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.o ./pwiz/analysis/demux/CubicHermiteSpline.o ./pwiz/analysis/passive/RegionTIC.o ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.o ./pwiz/analysis/common/LocalMaximumPeakDetector.o ./pwiz/data/proteome/ProteinListCache.o ./pwiz/data/vendor_readers/ExtendedReaderList.o pwiz/data/tradata/TraData.o ./pwiz/analysis/peakdetect/MZRTField.o ./pwiz/analysis/peakdetect/PeakelGrower.o ./pwiz/analysis/common/ExtraZeroSamplesFilter.o ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.o ./pwiz/data/msdata/SpectrumInfo.o ./libraries/CSpline/CSpline.o ./pwiz/analysis/demux/MatrixIO.o ./pwiz/analysis/peakdetect/Noise.o ./pwiz/analysis/passive/TabularConfig.o ./pwiz/data/misc/MinimumPepXML.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.o ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.o ./pwiz/data/proteome/Reader_FASTA.o ./pwiz/utility/chemistry/Chemistry.o ./pwiz/analysis/peptideid/PeptideID_flat.o ./pwiz/data/identdata/Serializer_Text.o ./pwiz/data/identdata/Diff.o ./pwiz/analysis/passive/MSDataCache.o ./pwiz/data/msdata/BinaryDataEncoder.o .libs/libpwiz.lax/lt1-IO.o ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.o pwiz/analysis/proteome_processing/ProteinListFactory.o ./pwiz/analysis/passive/SpectrumTable.o ./pwiz/analysis/demux/DemuxDebugWriter.o .libs/libpwiz.lax/lt2-Version.o ./pwiz/data/msdata/SpectrumList_MSn.o ./pwiz/analysis/passive/PepXMLCat.o ./pwiz/data/msdata/SpectrumIterator.o ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.o ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.o .libs/libpwiz.lax/lt3-Version.o ./pwiz/data/msdata/SpectrumListCache.o ./pwiz/data/msdata/References.o ./pwiz/analysis/common/WhittakerSmoother.o ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.o .libs/libpwiz.lax/lt4-References.o ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o pwiz/data/tradata/examples.o ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.o ./pwiz/data/common/Unimod.o ./pwiz/analysis/peakdetect/PeakelPicker.o ./pwiz/analysis/peakdetect/FeatureDetectorSimple.o ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.o ./pwiz/data/common/CVTranslator.o ./pwiz/analysis/demux/SpectrumPeakExtractor.o ./pwiz/data/proteome/Digestion.o ./pwiz/analysis/passive/RegionSlice.o ./pwiz/data/proteome/ProteomeDataFile.o ./libraries/libsvm-3.0/svm.o ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.o ./pwiz/analysis/spectrum_processing/ThresholdFilter.o ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.o ./pwiz/data/vendor_readers/Waters/Reader_Waters.o ./pwiz/analysis/passive/MSDataAnalyzer.o ./pwiz/data/identdata/Serializer_mzid.o ./pwiz/data/proteome/ProteomeData.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.o ./pwiz/analysis/demux/DemuxDebugReader.o ./pwiz/data/proteome/Modification.o ./pwiz/analysis/passive/MetadataReporter.o .libs/libpwiz.lax/lt5-DefaultReaderList.o ./pwiz/analysis/spectrum_processing/SpectrumListFactory.o pwiz/analysis/proteome_processing/ProteinList_Filter.o ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.o ./pwiz/data/msdata/SpectrumList_BTDX.o .libs/libpwiz.lax/lt6-DefaultReaderList.o ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.o ./pwiz/analysis/passive/RegionSIC.o .libs/libpwiz.lax/lt7-examples.o ./pwiz/data/identdata/Serializer_protXML.o .libs/libpwiz.lax/lt8-Diff.o .libs/libpwiz.lax/lt9-Reader.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/vendor_readers/ABI/Reader_ABI.o ./pwiz/analysis/demux/OverlapDemultiplexer.o ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.o ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.o ./pwiz/utility/misc/Base64.o ./pwiz/analysis/frequency/MagnitudeLorentzian.o ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/analysis/spectrum_processing/SpectrumList_3D.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/analysis/demux/DemuxHelpers.o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/utility/math/Stats.o ./pwiz/analysis/frequency/TruncatedLorentzian.o .libs/libpwiz.lax/lt10-Diff.o ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.o ./pwiz/data/proteome/Serializer_FASTA.o ./pwiz/analysis/frequency/PeakDetectorNaive.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.o ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.o ./pwiz/data/common/cv.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/utility/math/erf.o ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.o ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o ./pwiz/utility/misc/VendorReaderTestHarness.o ./pwiz/data/msdata/MSDataMerger.o ./pwiz/utility/misc/IterationListener.o ./pwiz/analysis/demux/PrecursorMaskCodec.o ./pwiz/analysis/frequency/ParameterEstimator.o ./pwiz/data/misc/FrequencyDataTestData.o ./pwiz/analysis/passive/SpectrumBinaryData.o ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.o ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.o ./pwiz/utility/math/Parabola.o ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.o ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.o ./pwiz/data/identdata/KwCVMap.o .libs/libpwiz.lax/lt11-References.o ./pwiz/data/common/ParamTypes.o ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.o ./pwiz/utility/chemistry/ChemistryData.o ./pwiz/utility/chemistry/IsotopeTable.o ./pwiz/data/identdata/DelimReader.o ./pwiz/analysis/passive/RegionAnalyzer.o .libs/libpwiz.lax/lt12-Version.o ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.o .libs/libpwiz.lax/lt13-examples.o ./pwiz/data/common/diff_std.o ./pwiz/data/common/obo.o ./pwiz/analysis/common/CwtPeakDetector.o ./pwiz/analysis/peakdetect/PeakExtractor.o ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.o .libs/libpwiz.lax/lt14-examples.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/utility/misc/TabReader.o ./pwiz/data/msdata/Serializer_MSn.o pwiz/data/tradata/Serializer_traML.o ./pwiz/data/misc/PeakData.o ./pwiz/analysis/frequency/FrequencyEstimatorSimple.o ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.o ./pwiz/data/proteome/AminoAcid.o ./pwiz/data/identdata/IdentData.o ./pwiz/data/misc/FrequencyData.o ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.o .libs/libpwiz.lax/lt15-Diff.o .libs/libpwiz.lax/lt16-Reader.o ./pwiz/data/identdata/Pep2MzIdent.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/analysis/spectrum_processing/MS2Deisotoper.o .libs/libpwiz.lax/lt17-DefaultReaderList.o ./pwiz/analysis/common/SavitzkyGolaySmoother.o ./pwiz/data/msdata/SpectrumList_mzML.o .libs/libpwiz.lax/lt18-Reader.o ./pwiz/analysis/peptideid/PeptideIDMap.o ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.o ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.o .libs/libpwiz.lax/lt19-Version.o .libs/libpwiz.lax/lt20-IO.o pwiz/data/tradata/TraDataFile.o ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.o ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o ./pwiz/analysis/common/ZeroSampleFiller.o .libs/libpwiz.lax/lt21-Version.o ./pwiz/analysis/peakdetect/FeatureModeler.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libpwiz.a libtool: link: rm -fr .libs/libpwiz.lax libtool: link: ( cd ".libs" && rm -f "libpwiz.la" && ln -s "../libpwiz.la" "libpwiz.la" ) depbase=`echo pwiz_tools/commandline/msconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/commandline/msconvert.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/msconvert.o pwiz_tools/commandline/msconvert.cpp &&\ mv -f $depbase.Tpo $depbase.Po pwiz_tools/commandline/msconvert.cpp:425:32: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] << "Build date: " << __DATE__ << " " << __TIME__ << endl; ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:425:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] << "Build date: " << __DATE__ << " " << __TIME__ << endl; ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:888:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] << "Build date: " << __DATE__ << " " << __TIME__ << endl; ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:888:50: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] << "Build date: " << __DATE__ << " " << __TIME__ << endl; ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o msconvert pwiz_tools/commandline/msconvert.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/msconvert pwiz_tools/commandline/msconvert.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_mzid_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/write_mzid_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_mzid_example_files.o pwiz_tools/examples/write_mzid_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o write_mzid_example_files ./pwiz_tools/examples/write_mzid_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_mzid_example_files ./pwiz_tools/examples/write_mzid_example_files.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/txt2mzml.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/txt2mzml.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/txt2mzml.o pwiz_tools/examples/txt2mzml.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o txt2mzml ./pwiz_tools/examples/txt2mzml.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/txt2mzml ./pwiz_tools/examples/txt2mzml.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_msdata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/hello_msdata.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/hello_msdata.o pwiz_tools/examples/hello_msdata.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hello_msdata ./pwiz_tools/examples/hello_msdata.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hello_msdata ./pwiz_tools/examples/hello_msdata.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/pepcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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"/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/commandline/pepcat.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/pepcat.o pwiz_tools/commandline/pepcat.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o pepcat pwiz_tools/commandline/pepcat.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/pepcat pwiz_tools/commandline/pepcat.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/idconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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pwiz_tools/commandline/idconvert.cpp:204:32: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] << "Build date: " << __DATE__ << " " << __TIME__ << endl; ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:204:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] << "Build date: " << __DATE__ << " " << __TIME__ << endl; ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:544:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] << "Build date: " << __DATE__ << " " << __TIME__ << endl; ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:544:50: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] << "Build date: " << __DATE__ << " " << __TIME__ << endl; ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o idconvert pwiz_tools/commandline/idconvert.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/idconvert pwiz_tools/commandline/idconvert.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_analyzer_2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/hello_analyzer_2.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/hello_analyzer_2.o pwiz_tools/examples/hello_analyzer_2.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hello_analyzer_2 ./pwiz_tools/examples/hello_analyzer_2.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hello_analyzer_2 ./pwiz_tools/examples/hello_analyzer_2.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/write_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_example_files.o pwiz_tools/examples/write_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o write_example_files ./pwiz_tools/examples/write_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_example_files ./pwiz_tools/examples/write_example_files.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_traml_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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"/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/write_traml_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_traml_example_files.o pwiz_tools/examples/write_traml_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o write_traml_example_files ./pwiz_tools/examples/write_traml_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_traml_example_files ./pwiz_tools/examples/write_traml_example_files.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_proteome_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/write_proteome_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_proteome_example_files.o pwiz_tools/examples/write_proteome_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o write_proteome_example_files ./pwiz_tools/examples/write_proteome_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_proteome_example_files ./pwiz_tools/examples/write_proteome_example_files.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/mscat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/mscat.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/mscat.o pwiz_tools/examples/mscat.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mscat ./pwiz_tools/examples/mscat.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mscat ./pwiz_tools/examples/mscat.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_analyzer.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.10827\" -DPACKAGE_STRING=\"libpwiz\ 3.0.10827\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.10827\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_CHRONO_HPP=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"./libraries/libsvm-3.0" -I"pwiz/data/msdata/ramp" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/eigen3-nnls" -I "/<>/debian/build/libraries/CSpline" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/hello_analyzer.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/hello_analyzer.o pwiz_tools/examples/hello_analyzer.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hello_analyzer ./pwiz_tools/examples/hello_analyzer.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hello_analyzer ./pwiz_tools/examples/hello_analyzer.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread make[1]: Leaving directory '/<>/debian/build' make[1]: Entering directory '/<>/debian/build' make[2]: Entering directory '/<>/debian/build' /bin/mkdir -p '/<>/debian/build/usr/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libpwiz.la '/<>/debian/build/usr/lib' libtool: install: /usr/bin/install -c .libs/libpwiz.so.3.0.0 /<>/debian/build/usr/lib/libpwiz.so.3.0.0 libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so.3 || { rm -f libpwiz.so.3 && ln -s libpwiz.so.3.0.0 libpwiz.so.3; }; }) libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so || { rm -f libpwiz.so && ln -s libpwiz.so.3.0.0 libpwiz.so; }; }) libtool: install: /usr/bin/install -c .libs/libpwiz.lai /<>/debian/build/usr/lib/libpwiz.la libtool: install: /usr/bin/install -c .libs/libpwiz.a /<>/debian/build/usr/lib/libpwiz.a libtool: install: chmod 644 /<>/debian/build/usr/lib/libpwiz.a libtool: install: ranlib /<>/debian/build/usr/lib/libpwiz.a libtool: warning: remember to run 'libtool --finish /usr/lib' /bin/mkdir -p '/<>/debian/build/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c msconvert write_mzid_example_files txt2mzml hello_msdata pepcat idconvert hello_analyzer_2 write_example_files write_traml_example_files write_proteome_example_files mscat hello_analyzer '/<>/debian/build/usr/bin' libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/msconvert /<>/debian/build/usr/bin/msconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_mzid_example_files /<>/debian/build/usr/bin/write_mzid_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/txt2mzml /<>/debian/build/usr/bin/txt2mzml libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_msdata /<>/debian/build/usr/bin/hello_msdata libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/pepcat /<>/debian/build/usr/bin/pepcat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/idconvert /<>/debian/build/usr/bin/idconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer_2 /<>/debian/build/usr/bin/hello_analyzer_2 libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_example_files /<>/debian/build/usr/bin/write_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_traml_example_files /<>/debian/build/usr/bin/write_traml_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_proteome_example_files /<>/debian/build/usr/bin/write_proteome_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/mscat /<>/debian/build/usr/bin/mscat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer /<>/debian/build/usr/bin/hello_analyzer make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/<>/debian/build' make[1]: Leaving directory '/<>/debian/build' Removing the RPATH datum from the binaries. sh debian/remove-rpath-from-binaries.sh /<> sh debian/make-included-headers-hierarchy.sh .pc/0001-New-patch-for-the-missing-eigen3-nnls-header-file.patch/libraries/eigen3-nnls/nnls.h doc/dox/mainpage.hpp debian/build/libraries/libsvm-3.0/svm.h debian/build/libraries/boost_aux/boost/nowide/config.hpp debian/build/libraries/boost_aux/boost/nowide/windows.hpp debian/build/libraries/boost_aux/boost/nowide/system.hpp debian/build/libraries/boost_aux/boost/nowide/cstdlib.hpp debian/build/libraries/boost_aux/boost/nowide/convert.hpp debian/build/libraries/boost_aux/boost/nowide/args.hpp debian/build/libraries/boost_aux/boost/nowide/iostream.hpp debian/build/libraries/boost_aux/boost/nowide/cenv.hpp debian/build/libraries/boost_aux/boost/nowide/stackstring.hpp debian/build/libraries/boost_aux/boost/nowide/filebuf.hpp debian/build/libraries/boost_aux/boost/nowide/fstream.hpp debian/build/libraries/boost_aux/boost/nowide/cstdio.hpp debian/build/libraries/boost_aux/boost/enum/base.hpp debian/build/libraries/boost_aux/boost/enum/bitfield.hpp debian/build/libraries/boost_aux/boost/enum/iterator.hpp debian/build/libraries/boost_aux/boost/enum/macros.hpp debian/build/libraries/boost_aux/boost/utility/mutexed_singleton.hpp debian/build/libraries/boost_aux/boost/utility/singleton.hpp debian/build/libraries/boost_aux/boost/utility/thread_specific_singleton.hpp debian/build/libraries/boost_aux/boost/utility/detail/restricted.hpp debian/build/libraries/boost_aux/boost/utility/detail/member_dereference.hpp debian/build/libraries/boost_aux/boost/utility/detail/singleton_manager.hpp debian/build/libraries/boost_aux/boost/enum.hpp debian/build/libraries/boost_aux/boost/foreach_field.hpp debian/build/libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp debian/build/libraries/boost_aux/boost/iostreams/filter/base64.hpp debian/build/libraries/boost_aux/tools/bcp/licence_info.hpp debian/build/libraries/boost_aux/tools/bcp/fileview.hpp debian/build/libraries/boost_aux/tools/bcp/bcp.hpp debian/build/libraries/boost_aux/tools/bcp/bcp_imp.hpp debian/build/libraries/eigen3-nnls/nnls.h debian/build/libraries/CSpline/CSpline.h debian/build/pwiz/analysis/passive/RegionSIC.hpp debian/build/pwiz/analysis/passive/PepXMLCat.hpp debian/build/pwiz/analysis/passive/RegionTIC.hpp debian/build/pwiz/analysis/passive/MSDataCache.hpp debian/build/pwiz/analysis/passive/SpectrumBinaryData.hpp debian/build/pwiz/analysis/passive/SpectrumTable.hpp debian/build/pwiz/analysis/passive/RegionAnalyzer.hpp debian/build/pwiz/analysis/passive/RunSummary.hpp debian/build/pwiz/analysis/passive/MSDataAnalyzer.hpp debian/build/pwiz/analysis/passive/RegionSlice.hpp debian/build/pwiz/analysis/passive/TabularConfig.hpp debian/build/pwiz/analysis/passive/MetadataReporter.hpp debian/build/pwiz/analysis/peptideid/PeptideID.hpp debian/build/pwiz/analysis/peptideid/PeptideID_flat.hpp debian/build/pwiz/analysis/peptideid/PeptideID_pepXML.hpp debian/build/pwiz/analysis/peptideid/PeptideIDMap.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetector.hpp debian/build/pwiz/analysis/peakdetect/PeakFitter.hpp debian/build/pwiz/analysis/peakdetect/MZRTField.hpp debian/build/pwiz/analysis/peakdetect/FeatureModeler.hpp debian/build/pwiz/analysis/peakdetect/PeakFinder.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp debian/build/pwiz/analysis/peakdetect/PeakExtractor.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp debian/build/pwiz/analysis/peakdetect/Noise.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp debian/build/pwiz/analysis/peakdetect/PeakelGrower.hpp debian/build/pwiz/analysis/peakdetect/PeakelPicker.hpp debian/build/pwiz/analysis/demux/DemuxTypes.hpp debian/build/pwiz/analysis/demux/DemuxSolver.hpp debian/build/pwiz/analysis/demux/OverlapDemultiplexer.hpp debian/build/pwiz/analysis/demux/DemuxDebugReader.hpp debian/build/pwiz/analysis/demux/IPrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/EnumConstantNotPresentException.hpp debian/build/pwiz/analysis/demux/MatrixIO.hpp debian/build/pwiz/analysis/demux/MSXDemultiplexer.hpp debian/build/pwiz/analysis/demux/CubicHermiteSpline.hpp debian/build/pwiz/analysis/demux/IInterpolation.hpp debian/build/pwiz/analysis/demux/DemuxHelpers.hpp debian/build/pwiz/analysis/demux/PrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/IDemultiplexer.hpp debian/build/pwiz/analysis/demux/SpectrumPeakExtractor.hpp debian/build/pwiz/analysis/demux/DemuxDebugWriter.hpp debian/build/pwiz/analysis/frequency/PeakDetector.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp debian/build/pwiz/analysis/frequency/ParameterEstimator.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp debian/build/pwiz/analysis/frequency/PeakDetectorNaive.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimator.hpp debian/build/pwiz/analysis/frequency/DerivativeTest.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp debian/build/pwiz/analysis/frequency/ParametrizedFunction.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzian.hpp debian/build/pwiz/analysis/common/PeakDetector.hpp debian/build/pwiz/analysis/common/ZeroSampleFiller.hpp debian/build/pwiz/analysis/common/WhittakerSmoother.hpp debian/build/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp debian/build/pwiz/analysis/common/CwtPeakDetector.hpp debian/build/pwiz/analysis/common/Smoother.hpp debian/build/pwiz/analysis/common/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/common/DataFilter.hpp debian/build/pwiz/analysis/common/LocalMaximumPeakDetector.hpp debian/build/pwiz/analysis/Version.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp debian/build/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp debian/build/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp debian/build/pwiz/analysis/proteome_processing/ProteinListFactory.hpp debian/build/pwiz/utility/proteome/IPIFASTADatabase.hpp debian/build/pwiz/utility/findmf/base/resample/bucket1d.hpp debian/build/pwiz/utility/findmf/base/resample/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/bin1d.hpp debian/build/pwiz/utility/findmf/base/resample/convert2dense.hpp debian/build/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/breakspec.hpp debian/build/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp debian/build/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp debian/build/pwiz/utility/findmf/base/ms/simplepicker.hpp debian/build/pwiz/utility/findmf/base/base/copyif.hpp debian/build/pwiz/utility/findmf/base/base/scale.hpp debian/build/pwiz/utility/findmf/base/base/constants.hpp debian/build/pwiz/utility/findmf/base/base/base.hpp debian/build/pwiz/utility/findmf/base/base/diff.hpp debian/build/pwiz/utility/findmf/base/base/cumsum.hpp debian/build/pwiz/utility/findmf/base/base/utilities/base.hpp debian/build/pwiz/utility/findmf/base/base/utilities/interpolation.hpp debian/build/pwiz/utility/findmf/base/base/interpolate.hpp debian/build/pwiz/utility/findmf/base/filter/filter.hpp debian/build/pwiz/utility/findmf/base/filter/gaussfilter.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/gauss.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp debian/build/pwiz/utility/minimxml/SAXParser.hpp debian/build/pwiz/utility/minimxml/XMLWriter.hpp debian/build/pwiz/utility/misc/mru_list.hpp debian/build/pwiz/utility/misc/IterationListener.hpp debian/build/pwiz/utility/misc/random_access_compressed_ifstream.hpp debian/build/pwiz/utility/misc/endian.hpp debian/build/pwiz/utility/misc/Environment.hpp debian/build/pwiz/utility/misc/Singleton.hpp debian/build/pwiz/utility/misc/virtual_map.hpp debian/build/pwiz/utility/misc/unit.hpp debian/build/pwiz/utility/misc/SHA1_ostream.hpp debian/build/pwiz/utility/misc/Once.hpp debian/build/pwiz/utility/misc/SHA1Calculator.hpp debian/build/pwiz/utility/misc/Stream.hpp debian/build/pwiz/utility/misc/TabReader.hpp debian/build/pwiz/utility/misc/MSIHandler.hpp debian/build/pwiz/utility/misc/Std.hpp debian/build/pwiz/utility/misc/Image.hpp debian/build/pwiz/utility/misc/IntegerSet.hpp debian/build/pwiz/utility/misc/Container.hpp debian/build/pwiz/utility/misc/VendorReaderTestHarness.hpp debian/build/pwiz/utility/misc/Base64.hpp debian/build/pwiz/utility/misc/DateTime.hpp debian/build/pwiz/utility/misc/CharIndexedVector.hpp debian/build/pwiz/utility/misc/shared_map.hpp debian/build/pwiz/utility/misc/SHA1.h debian/build/pwiz/utility/misc/almost_equal.hpp debian/build/pwiz/utility/misc/Filesystem.hpp debian/build/pwiz/utility/misc/String.hpp debian/build/pwiz/utility/misc/optimized_lexical_cast.hpp debian/build/pwiz/utility/misc/Timer.hpp debian/build/pwiz/utility/misc/cpp_cli_utilities.hpp debian/build/pwiz/utility/misc/Exception.hpp debian/build/pwiz/utility/misc/ClickwrapPrompter.hpp debian/build/pwiz/utility/misc/Export.hpp debian/build/pwiz/utility/math/HouseholderQR.hpp debian/build/pwiz/utility/math/Stats.hpp debian/build/pwiz/utility/math/qr.hpp debian/build/pwiz/utility/math/MatrixInverse.hpp debian/build/pwiz/utility/math/Parabola.hpp debian/build/pwiz/utility/math/Types.hpp debian/build/pwiz/utility/math/LinearSolver.hpp debian/build/pwiz/utility/math/OrderedPair.hpp debian/build/pwiz/utility/math/MatchedFilter.hpp debian/build/pwiz/utility/math/round.hpp debian/build/pwiz/utility/math/LinearLeastSquares.hpp debian/build/pwiz/utility/math/erf.hpp debian/build/pwiz/utility/chemistry/IsotopeTable.hpp debian/build/pwiz/utility/chemistry/Ion.hpp debian/build/pwiz/utility/chemistry/IsotopeCalculator.hpp debian/build/pwiz/utility/chemistry/Chemistry.hpp debian/build/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp debian/build/pwiz/utility/chemistry/MZTolerance.hpp debian/build/pwiz/utility/chemistry/ChemistryData.hpp debian/build/pwiz/data/proteome/ProteinListCache.hpp debian/build/pwiz/data/proteome/DefaultReaderList.hpp debian/build/pwiz/data/proteome/Digestion.hpp debian/build/pwiz/data/proteome/TextWriter.hpp debian/build/pwiz/data/proteome/Reader.hpp debian/build/pwiz/data/proteome/ProteomeDataFile.hpp debian/build/pwiz/data/proteome/ProteomeData.hpp debian/build/pwiz/data/proteome/Diff.hpp debian/build/pwiz/data/proteome/Serializer_FASTA.hpp debian/build/pwiz/data/proteome/ProteinListWrapper.hpp debian/build/pwiz/data/proteome/Modification.hpp debian/build/pwiz/data/proteome/AminoAcid.hpp debian/build/pwiz/data/proteome/Version.hpp debian/build/pwiz/data/proteome/examples.hpp debian/build/pwiz/data/proteome/Peptide.hpp debian/build/pwiz/data/proteome/Reader_FASTA.hpp debian/build/pwiz/data/misc/FrequencyDataTestData.hpp debian/build/pwiz/data/misc/PeakData.hpp debian/build/pwiz/data/misc/MinimumPepXML.hpp debian/build/pwiz/data/misc/CalibrationParameters.hpp debian/build/pwiz/data/misc/FrequencyData.hpp debian/build/pwiz/data/misc/SampleDatum.hpp debian/build/pwiz/data/msdata/ChromatogramList_mzML.hpp debian/build/pwiz/data/msdata/ChromatogramListBase.hpp debian/build/pwiz/data/msdata/MSDataFile.hpp debian/build/pwiz/data/msdata/SpectrumListWrapper.hpp debian/build/pwiz/data/msdata/DefaultReaderList.hpp debian/build/pwiz/data/msdata/References.hpp debian/build/pwiz/data/msdata/SHA1OutputObserver.hpp debian/build/pwiz/data/msdata/MSDataMerger.hpp debian/build/pwiz/data/msdata/Serializer_mzML.hpp debian/build/pwiz/data/msdata/MSNumpress.hpp debian/build/pwiz/data/msdata/TextWriter.hpp debian/build/pwiz/data/msdata/Reader.hpp debian/build/pwiz/data/msdata/MemoryMRUCache.hpp debian/build/pwiz/data/msdata/SpectrumList_MGF.hpp debian/build/pwiz/data/msdata/SpectrumWorkerThreads.hpp debian/build/pwiz/data/msdata/LegacyAdapter.hpp debian/build/pwiz/data/msdata/Serializer_MSn.hpp debian/build/pwiz/data/msdata/SpectrumListCache.hpp debian/build/pwiz/data/msdata/Diff.hpp debian/build/pwiz/data/msdata/SpectrumList_mzML.hpp debian/build/pwiz/data/msdata/Serializer_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumList_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumListBase.hpp debian/build/pwiz/data/msdata/SpectrumIterator.hpp debian/build/pwiz/data/msdata/SpectrumList_MSn.hpp debian/build/pwiz/data/msdata/SpectrumList_BTDX.hpp debian/build/pwiz/data/msdata/MSData.hpp 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debian/build/pwiz/data/identdata/Reader.hpp debian/build/pwiz/data/identdata/Pep2MzIdent.hpp debian/build/pwiz/data/identdata/Serializer_Text.hpp debian/build/pwiz/data/identdata/Diff.hpp debian/build/pwiz/data/identdata/IdentData.hpp debian/build/pwiz/data/identdata/MascotReader.hpp debian/build/pwiz/data/identdata/Serializer_pepXML.hpp debian/build/pwiz/data/identdata/KwCVMap.hpp debian/build/pwiz/data/identdata/DelimWriter.hpp debian/build/pwiz/data/identdata/Serializer_mzid.hpp debian/build/pwiz/data/identdata/IdentDataFile.hpp debian/build/pwiz/data/identdata/Version.hpp debian/build/pwiz/data/identdata/IO.hpp debian/build/pwiz/data/identdata/examples.hpp debian/build/pwiz/data/identdata/DelimReader.hpp debian/build/pwiz/data/vendor_readers/ExtendedReaderList.hpp debian/build/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp 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debian/build/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp debian/build/pwiz/data/tradata/DefaultReaderList.hpp debian/build/pwiz/data/tradata/References.hpp debian/build/pwiz/data/tradata/TextWriter.hpp debian/build/pwiz/data/tradata/Reader.hpp debian/build/pwiz/data/tradata/Diff.hpp debian/build/pwiz/data/tradata/TraData.hpp debian/build/pwiz/data/tradata/TraDataFile.hpp debian/build/pwiz/data/tradata/Serializer_traML.hpp debian/build/pwiz/data/tradata/Version.hpp debian/build/pwiz/data/tradata/IO.hpp debian/build/pwiz/data/tradata/examples.hpp debian/build/pwiz/Version.hpp debian/build/pwiz_tools/common/MSDataAnalyzerApplication.hpp debian/build/pwiz_tools/common/FullReaderList.hpp docbook-to-man debian/msconvert.sgml > debian/msconvert.1 docbook-to-man debian/idconvert.sgml > debian/idconvert.1 docbook-to-man debian/mscat.sgml > debian/mscat.1 docbook-to-man debian/txt2mzml.sgml > debian/txt2mzml.1 touch build-arch-stamp entering the build-indep-stamp target cd doc/dox && doxygen warning: Tag `USE_WINDOWS_ENCODING' at line 11 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `DETAILS_AT_TOP' at line 33 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 70 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 130 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 177 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 178 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `MAX_DOT_GRAPH_WIDTH' at line 231 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `MAX_DOT_GRAPH_HEIGHT' at line 232 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/pwiz Searching for files in directory /<>/pwiz/analysis Searching for files in directory /<>/pwiz/analysis/common Searching for files in directory /<>/pwiz/analysis/demux Searching for files in directory /<>/pwiz/analysis/frequency Searching for files in directory /<>/pwiz/analysis/passive Searching for files in directory /<>/pwiz/analysis/peakdetect Searching for files in directory /<>/pwiz/analysis/peptideid Searching for files in directory /<>/pwiz/analysis/proteome_processing Searching for files in directory /<>/pwiz/analysis/spectrum_processing Searching for files in directory /<>/pwiz/data Searching for files in directory /<>/pwiz/data/common Searching for files in directory /<>/pwiz/data/identdata Searching for files in directory /<>/pwiz/data/misc Searching for files in directory /<>/pwiz/data/msdata Searching for files in directory /<>/pwiz/data/proteome Searching for files in directory /<>/pwiz/data/tradata Searching for files in directory /<>/pwiz/data/vendor_readers Searching for files in directory /<>/pwiz/data/vendor_readers/ABI Searching for files in directory /<>/pwiz/data/vendor_readers/ABI/T2D Searching for files in directory /<>/pwiz/data/vendor_readers/Agilent Searching for files in directory /<>/pwiz/data/vendor_readers/Bruker Searching for files in directory /<>/pwiz/data/vendor_readers/Shimadzu Searching for files in directory /<>/pwiz/data/vendor_readers/Thermo Searching for files in directory /<>/pwiz/data/vendor_readers/UIMF Searching for files in directory /<>/pwiz/data/vendor_readers/Waters Searching for files in directory /<>/pwiz/utility Searching for files in directory /<>/pwiz/utility/chemistry Searching for files in directory /<>/pwiz/utility/findmf Searching for files in directory /<>/pwiz/utility/findmf/base Searching for files in directory /<>/pwiz/utility/findmf/base/base Searching for files in directory /<>/pwiz/utility/findmf/base/base/utilities Searching for files in directory /<>/pwiz/utility/findmf/base/filter Searching for files in directory /<>/pwiz/utility/findmf/base/filter/utilities Searching for files in directory /<>/pwiz/utility/findmf/base/ms Searching for files in directory /<>/pwiz/utility/findmf/base/resample Searching for files in directory /<>/pwiz/utility/findmf/base/resample/utilities Searching for files in directory /<>/pwiz/utility/math Searching for files in directory /<>/pwiz/utility/minimxml Searching for files in directory /<>/pwiz/utility/misc Searching for files in directory /<>/pwiz/utility/proteome Searching for files in directory /<>/doc/dox Reading and parsing tag files Parsing files Preprocessing /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Parsing file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Preprocessing /<>/pwiz/analysis/common/DataFilter.hpp... Parsing file /<>/pwiz/analysis/common/DataFilter.hpp... Preprocessing /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Parsing file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Preprocessing /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Parsing file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Preprocessing /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Parsing file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Preprocessing /<>/pwiz/analysis/common/PeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/PeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Parsing file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Preprocessing /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Parsing file /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/Smoother.hpp... Parsing file /<>/pwiz/analysis/common/Smoother.hpp... Preprocessing /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Parsing file /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Preprocessing /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Parsing file /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Parsing file /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Preprocessing /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Parsing file /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Preprocessing /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Parsing file /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Preprocessing /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Parsing file /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxSolver.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxSolver.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxTypes.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxTypes.hpp... Preprocessing /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Parsing file /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Preprocessing /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/IInterpolation.hpp... Parsing file /<>/pwiz/analysis/demux/IInterpolation.hpp... Preprocessing /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Parsing file /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Preprocessing /<>/pwiz/analysis/demux/MatrixIO.hpp... Parsing file /<>/pwiz/analysis/demux/MatrixIO.hpp... Preprocessing /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Parsing file /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Preprocessing /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Parsing file /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Preprocessing /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Parsing file /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Preprocessing /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Parsing file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Parsing file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Parsing file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Parsing file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetector.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Preprocessing /<>/pwiz/analysis/passive/MetadataReporter.hpp... Parsing file /<>/pwiz/analysis/passive/MetadataReporter.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Parsing file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Parsing file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Preprocessing /<>/pwiz/analysis/passive/MSDataCache.hpp... Parsing file /<>/pwiz/analysis/passive/MSDataCache.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Parsing file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Preprocessing /<>/pwiz/analysis/passive/PepXMLCat.hpp... Parsing file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Parsing file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionSIC.hpp... Parsing file /<>/pwiz/analysis/passive/RegionSIC.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionSlice.hpp... Parsing file /<>/pwiz/analysis/passive/RegionSlice.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionTIC.hpp... Parsing file /<>/pwiz/analysis/passive/RegionTIC.hpp... Preprocessing /<>/pwiz/analysis/passive/RunSummary.hpp... Parsing file /<>/pwiz/analysis/passive/RunSummary.hpp... Preprocessing /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Parsing file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Preprocessing /<>/pwiz/analysis/passive/SpectrumTable.hpp... Parsing file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Preprocessing /<>/pwiz/analysis/passive/TabularConfig.hpp... Parsing file /<>/pwiz/analysis/passive/TabularConfig.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Parsing file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/Noise.hpp... Parsing file /<>/pwiz/analysis/peakdetect/Noise.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Preprocessing /<>/pwiz/analysis/Version.hpp... Parsing file /<>/pwiz/analysis/Version.hpp... Preprocessing /<>/pwiz/data/common/BinaryIndexStream.hpp... Parsing file /<>/pwiz/data/common/BinaryIndexStream.hpp... Preprocessing /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Parsing file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Preprocessing /<>/pwiz/data/common/cv.hpp... Parsing file /<>/pwiz/data/common/cv.hpp... Preprocessing /<>/pwiz/data/common/cvtest.cpp... Parsing file /<>/pwiz/data/common/cvtest.cpp... Preprocessing /<>/pwiz/data/common/CVTranslator.hpp... Parsing file /<>/pwiz/data/common/CVTranslator.hpp... Preprocessing /<>/pwiz/data/common/CVTranslatorTest.cpp... Parsing file /<>/pwiz/data/common/CVTranslatorTest.cpp... Preprocessing /<>/pwiz/data/common/diff_std.hpp... Parsing file /<>/pwiz/data/common/diff_std.hpp... Preprocessing /<>/pwiz/data/common/diff_std_test.cpp... Parsing file /<>/pwiz/data/common/diff_std_test.cpp... Preprocessing /<>/pwiz/data/common/Index.hpp... Parsing file /<>/pwiz/data/common/Index.hpp... Preprocessing /<>/pwiz/data/common/MemoryIndex.hpp... Parsing file /<>/pwiz/data/common/MemoryIndex.hpp... Preprocessing /<>/pwiz/data/common/MemoryIndexTest.cpp... Parsing file /<>/pwiz/data/common/MemoryIndexTest.cpp... Preprocessing /<>/pwiz/data/common/obo.hpp... Parsing file /<>/pwiz/data/common/obo.hpp... Preprocessing /<>/pwiz/data/common/obotest.cpp... Parsing file /<>/pwiz/data/common/obotest.cpp... Preprocessing /<>/pwiz/data/common/ParamTypes.hpp... Parsing file /<>/pwiz/data/common/ParamTypes.hpp... Preprocessing /<>/pwiz/data/common/ParamTypesTest.cpp... Parsing file /<>/pwiz/data/common/ParamTypesTest.cpp... Preprocessing /<>/pwiz/data/common/Unimod.hpp... Parsing file /<>/pwiz/data/common/Unimod.hpp... Preprocessing /<>/pwiz/data/common/UnimodTest.cpp... Parsing file /<>/pwiz/data/common/UnimodTest.cpp... Preprocessing /<>/pwiz/data/identdata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/identdata/DelimReader.hpp... Parsing file /<>/pwiz/data/identdata/DelimReader.hpp... Preprocessing /<>/pwiz/data/identdata/DelimWriter.hpp... Parsing file /<>/pwiz/data/identdata/DelimWriter.hpp... Preprocessing /<>/pwiz/data/identdata/Diff.hpp... Parsing file /<>/pwiz/data/identdata/Diff.hpp... Preprocessing /<>/pwiz/data/identdata/DiffTest.cpp... Parsing file /<>/pwiz/data/identdata/DiffTest.cpp... Preprocessing /<>/pwiz/data/identdata/examples.hpp... Parsing file /<>/pwiz/data/identdata/examples.hpp... Preprocessing /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Parsing file /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Preprocessing /<>/pwiz/data/identdata/IdentData.hpp... Parsing file /<>/pwiz/data/identdata/IdentData.hpp... Preprocessing /<>/pwiz/data/identdata/IdentDataFile.hpp... Parsing file /<>/pwiz/data/identdata/IdentDataFile.hpp... Preprocessing /<>/pwiz/data/identdata/IdentDataTest.cpp... Parsing file /<>/pwiz/data/identdata/IdentDataTest.cpp... Preprocessing /<>/pwiz/data/identdata/IO.hpp... Parsing file /<>/pwiz/data/identdata/IO.hpp... Preprocessing /<>/pwiz/data/identdata/IOTest.cpp... Parsing file /<>/pwiz/data/identdata/IOTest.cpp... Preprocessing /<>/pwiz/data/identdata/KwCVMap.hpp... Parsing file /<>/pwiz/data/identdata/KwCVMap.hpp... Preprocessing /<>/pwiz/data/identdata/KwCVMapTest.cpp... Parsing file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Preprocessing /<>/pwiz/data/identdata/MascotReader.hpp... Parsing file /<>/pwiz/data/identdata/MascotReader.hpp... Preprocessing /<>/pwiz/data/identdata/MzidPredicates.hpp... Parsing file /<>/pwiz/data/identdata/MzidPredicates.hpp... Preprocessing /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Parsing file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Preprocessing /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Parsing file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Preprocessing /<>/pwiz/data/identdata/Reader.hpp... Parsing file /<>/pwiz/data/identdata/Reader.hpp... Preprocessing /<>/pwiz/data/identdata/ReaderTest.cpp... Parsing file /<>/pwiz/data/identdata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/identdata/References.hpp... Parsing file /<>/pwiz/data/identdata/References.hpp... Preprocessing /<>/pwiz/data/identdata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/identdata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_mzid.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_protXML.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_protXML.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_Text.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_Text.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Preprocessing /<>/pwiz/data/identdata/TextWriter.hpp... Parsing file /<>/pwiz/data/identdata/TextWriter.hpp... Preprocessing /<>/pwiz/data/identdata/Version.hpp... Parsing file /<>/pwiz/data/identdata/Version.hpp... Preprocessing /<>/pwiz/data/misc/CalibrationParameters.hpp... Parsing file /<>/pwiz/data/misc/CalibrationParameters.hpp... Preprocessing /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Parsing file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Preprocessing /<>/pwiz/data/misc/FrequencyData.hpp... Parsing file /<>/pwiz/data/misc/FrequencyData.hpp... Preprocessing /<>/pwiz/data/misc/FrequencyDataTest.cpp... Parsing file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Preprocessing /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Parsing file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Preprocessing /<>/pwiz/data/misc/MinimumPepXML.hpp... Parsing file /<>/pwiz/data/misc/MinimumPepXML.hpp... Preprocessing /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Parsing file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Preprocessing /<>/pwiz/data/misc/PeakData.hpp... Parsing file /<>/pwiz/data/misc/PeakData.hpp... Preprocessing /<>/pwiz/data/misc/PeakDataTest.cpp... Parsing file /<>/pwiz/data/misc/PeakDataTest.cpp... Preprocessing /<>/pwiz/data/misc/SampleDatum.hpp... Parsing file /<>/pwiz/data/misc/SampleDatum.hpp... Preprocessing /<>/pwiz/data/misc/SampleDatumTest.cpp... Parsing file /<>/pwiz/data/misc/SampleDatumTest.cpp... Preprocessing /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Parsing file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Preprocessing /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Parsing file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Parsing file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Parsing file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Parsing file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Preprocessing /<>/pwiz/data/msdata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/msdata/Diff.hpp... Parsing file /<>/pwiz/data/msdata/Diff.hpp... Preprocessing /<>/pwiz/data/msdata/DiffTest.cpp... Parsing file /<>/pwiz/data/msdata/DiffTest.cpp... Preprocessing /<>/pwiz/data/msdata/examples.hpp... Parsing file /<>/pwiz/data/msdata/examples.hpp... Preprocessing /<>/pwiz/data/msdata/Index_mzML.hpp... Parsing file /<>/pwiz/data/msdata/Index_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/IO.hpp... Parsing file /<>/pwiz/data/msdata/IO.hpp... Preprocessing /<>/pwiz/data/msdata/IOTest.cpp... Parsing file /<>/pwiz/data/msdata/IOTest.cpp... Preprocessing /<>/pwiz/data/msdata/LegacyAdapter.hpp... Parsing file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Preprocessing /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Parsing file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Preprocessing /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Parsing file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Preprocessing /<>/pwiz/data/msdata/MSData.hpp... Parsing file /<>/pwiz/data/msdata/MSData.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataFile.hpp... Parsing file /<>/pwiz/data/msdata/MSDataFile.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataFileTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSDataMerger.hpp... Parsing file /<>/pwiz/data/msdata/MSDataMerger.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSDataTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSnReaderTest.cpp... Parsing file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSNumpress.hpp... Parsing file /<>/pwiz/data/msdata/MSNumpress.hpp... Preprocessing /<>/pwiz/data/msdata/Reader.hpp... Parsing file /<>/pwiz/data/msdata/Reader.hpp... Preprocessing /<>/pwiz/data/msdata/ReaderTest.cpp... Parsing file /<>/pwiz/data/msdata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/msdata/References.hpp... Parsing file /<>/pwiz/data/msdata/References.hpp... Preprocessing /<>/pwiz/data/msdata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/msdata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MGF.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MSn.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzML.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Parsing file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumInfo.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumIterator.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListBase.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListCache.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Preprocessing /<>/pwiz/data/msdata/TextWriter.hpp... Parsing file /<>/pwiz/data/msdata/TextWriter.hpp... Preprocessing /<>/pwiz/data/msdata/Version.hpp... Parsing file /<>/pwiz/data/msdata/Version.hpp... Preprocessing /<>/pwiz/data/proteome/AminoAcid.hpp... Parsing file /<>/pwiz/data/proteome/AminoAcid.hpp... Preprocessing /<>/pwiz/data/proteome/AminoAcidTest.cpp... Parsing file /<>/pwiz/data/proteome/AminoAcidTest.cpp... Preprocessing /<>/pwiz/data/proteome/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/proteome/Diff.hpp... Parsing file /<>/pwiz/data/proteome/Diff.hpp... Preprocessing /<>/pwiz/data/proteome/DiffTest.cpp... Parsing file /<>/pwiz/data/proteome/DiffTest.cpp... Preprocessing /<>/pwiz/data/proteome/Digestion.hpp... Parsing file /<>/pwiz/data/proteome/Digestion.hpp... Preprocessing /<>/pwiz/data/proteome/DigestionTest.cpp... Parsing file /<>/pwiz/data/proteome/DigestionTest.cpp... Preprocessing /<>/pwiz/data/proteome/examples.hpp... Parsing file /<>/pwiz/data/proteome/examples.hpp... Preprocessing /<>/pwiz/data/proteome/Modification.hpp... Parsing file /<>/pwiz/data/proteome/Modification.hpp... Preprocessing /<>/pwiz/data/proteome/Peptide.hpp... Parsing file /<>/pwiz/data/proteome/Peptide.hpp... Preprocessing /<>/pwiz/data/proteome/PeptideTest.cpp... Parsing file /<>/pwiz/data/proteome/PeptideTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteinListCache.hpp... Parsing file /<>/pwiz/data/proteome/ProteinListCache.hpp... Preprocessing /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Parsing file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Preprocessing /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteomeData.hpp... Parsing file /<>/pwiz/data/proteome/ProteomeData.hpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Preprocessing /<>/pwiz/data/proteome/Reader.hpp... Parsing file /<>/pwiz/data/proteome/Reader.hpp... Preprocessing /<>/pwiz/data/proteome/Reader_FASTA.hpp... Parsing file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Preprocessing /<>/pwiz/data/proteome/ReaderTest.cpp... Parsing file /<>/pwiz/data/proteome/ReaderTest.cpp... Preprocessing /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Parsing file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Preprocessing /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Parsing file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Preprocessing /<>/pwiz/data/proteome/TextWriter.hpp... Parsing file /<>/pwiz/data/proteome/TextWriter.hpp... Preprocessing /<>/pwiz/data/proteome/Version.hpp... Parsing file /<>/pwiz/data/proteome/Version.hpp... Preprocessing /<>/pwiz/data/tradata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/tradata/Diff.hpp... Parsing file /<>/pwiz/data/tradata/Diff.hpp... Preprocessing /<>/pwiz/data/tradata/DiffTest.cpp... Parsing file /<>/pwiz/data/tradata/DiffTest.cpp... Preprocessing /<>/pwiz/data/tradata/examples.hpp... Parsing file /<>/pwiz/data/tradata/examples.hpp... Preprocessing /<>/pwiz/data/tradata/IO.hpp... Parsing file /<>/pwiz/data/tradata/IO.hpp... Preprocessing /<>/pwiz/data/tradata/IOTest.cpp... Parsing file /<>/pwiz/data/tradata/IOTest.cpp... Preprocessing /<>/pwiz/data/tradata/Reader.hpp... Parsing file /<>/pwiz/data/tradata/Reader.hpp... Preprocessing /<>/pwiz/data/tradata/ReaderTest.cpp... Parsing file /<>/pwiz/data/tradata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/tradata/References.hpp... Parsing file /<>/pwiz/data/tradata/References.hpp... Preprocessing /<>/pwiz/data/tradata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/tradata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/tradata/Serializer_traML.hpp... Parsing file /<>/pwiz/data/tradata/Serializer_traML.hpp... Preprocessing /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Parsing file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Preprocessing /<>/pwiz/data/tradata/TextWriter.hpp... Parsing file /<>/pwiz/data/tradata/TextWriter.hpp... Preprocessing /<>/pwiz/data/tradata/TraData.hpp... Parsing file /<>/pwiz/data/tradata/TraData.hpp... Preprocessing /<>/pwiz/data/tradata/TraDataFile.hpp... Parsing file /<>/pwiz/data/tradata/TraDataFile.hpp... Preprocessing /<>/pwiz/data/tradata/TraDataFileTest.cpp... Parsing file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Preprocessing /<>/pwiz/data/tradata/TraDataTest.cpp... Parsing file /<>/pwiz/data/tradata/TraDataTest.cpp... Preprocessing /<>/pwiz/data/tradata/Version.hpp... Parsing file /<>/pwiz/data/tradata/Version.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Parsing file /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Parsing file /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Parsing file /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Preprocessing /<>/pwiz/utility/chemistry/Chemistry.hpp... Parsing file /<>/pwiz/utility/chemistry/Chemistry.hpp... Preprocessing /<>/pwiz/utility/chemistry/ChemistryData.hpp... Parsing file /<>/pwiz/utility/chemistry/ChemistryData.hpp... Preprocessing /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Parsing file /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/Ion.hpp... Parsing file /<>/pwiz/utility/chemistry/Ion.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/MZTolerance.hpp... Parsing file /<>/pwiz/utility/chemistry/MZTolerance.hpp... Preprocessing /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Parsing file /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/base.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/base.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/basetest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/basetest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/constants.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/constants.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/copyif.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/copyif.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/diff.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/diff.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/difftest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/difftest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/scale.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/scale.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/filter.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/filter.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Parsing file /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Parsing file /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Parsing file /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Parsing file /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Parsing file /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Preprocessing /<>/pwiz/utility/math/erf.hpp... Parsing file /<>/pwiz/utility/math/erf.hpp... Preprocessing /<>/pwiz/utility/math/erfTest.cpp... Parsing file /<>/pwiz/utility/math/erfTest.cpp... Preprocessing /<>/pwiz/utility/math/HouseholderQR.hpp... Parsing file /<>/pwiz/utility/math/HouseholderQR.hpp... Preprocessing /<>/pwiz/utility/math/HouseholderQRTest.cpp... Parsing file /<>/pwiz/utility/math/HouseholderQRTest.cpp... Preprocessing /<>/pwiz/utility/math/LinearLeastSquares.hpp... Parsing file /<>/pwiz/utility/math/LinearLeastSquares.hpp... Preprocessing /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Parsing file /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Preprocessing /<>/pwiz/utility/math/LinearSolver.hpp... Parsing file /<>/pwiz/utility/math/LinearSolver.hpp... Preprocessing /<>/pwiz/utility/math/LinearSolverTest.cpp... Parsing file /<>/pwiz/utility/math/LinearSolverTest.cpp... Preprocessing /<>/pwiz/utility/math/MatchedFilter.hpp... Parsing file /<>/pwiz/utility/math/MatchedFilter.hpp... Preprocessing /<>/pwiz/utility/math/MatchedFilterTest.cpp... Parsing file /<>/pwiz/utility/math/MatchedFilterTest.cpp... Preprocessing /<>/pwiz/utility/math/MatrixInverse.hpp... Parsing file /<>/pwiz/utility/math/MatrixInverse.hpp... Preprocessing /<>/pwiz/utility/math/OrderedPair.hpp... Parsing file /<>/pwiz/utility/math/OrderedPair.hpp... Preprocessing /<>/pwiz/utility/math/OrderedPairTest.cpp... Parsing file /<>/pwiz/utility/math/OrderedPairTest.cpp... Preprocessing /<>/pwiz/utility/math/Parabola.hpp... Parsing file /<>/pwiz/utility/math/Parabola.hpp... Preprocessing /<>/pwiz/utility/math/ParabolaTest.cpp... Parsing file /<>/pwiz/utility/math/ParabolaTest.cpp... Preprocessing /<>/pwiz/utility/math/qr.hpp... Parsing file /<>/pwiz/utility/math/qr.hpp... Preprocessing /<>/pwiz/utility/math/qrTest.cpp... Parsing file /<>/pwiz/utility/math/qrTest.cpp... Preprocessing /<>/pwiz/utility/math/round.hpp... Parsing file /<>/pwiz/utility/math/round.hpp... Preprocessing /<>/pwiz/utility/math/Stats.hpp... Parsing file /<>/pwiz/utility/math/Stats.hpp... Preprocessing /<>/pwiz/utility/math/StatsTest.cpp... Parsing file /<>/pwiz/utility/math/StatsTest.cpp... Preprocessing /<>/pwiz/utility/math/Types.hpp... Parsing file /<>/pwiz/utility/math/Types.hpp... Preprocessing /<>/pwiz/utility/minimxml/SAXParser.hpp... Parsing file /<>/pwiz/utility/minimxml/SAXParser.hpp... Preprocessing /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Parsing file /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Preprocessing /<>/pwiz/utility/minimxml/XMLWriter.hpp... Parsing file /<>/pwiz/utility/minimxml/XMLWriter.hpp... Preprocessing /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Parsing file /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Preprocessing /<>/pwiz/utility/misc/almost_equal.hpp... Parsing file /<>/pwiz/utility/misc/almost_equal.hpp... Preprocessing /<>/pwiz/utility/misc/almost_equal_test.cpp... Parsing file /<>/pwiz/utility/misc/almost_equal_test.cpp... Preprocessing /<>/pwiz/utility/misc/Base64.hpp... Parsing file /<>/pwiz/utility/misc/Base64.hpp... Preprocessing /<>/pwiz/utility/misc/Base64Test.cpp... Parsing file /<>/pwiz/utility/misc/Base64Test.cpp... Preprocessing /<>/pwiz/utility/misc/CharIndexedVector.hpp... Parsing file /<>/pwiz/utility/misc/CharIndexedVector.hpp... Preprocessing /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Parsing file /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Preprocessing /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Parsing file /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Preprocessing /<>/pwiz/utility/misc/Container.hpp... Parsing file /<>/pwiz/utility/misc/Container.hpp... Preprocessing /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Parsing file /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Preprocessing /<>/pwiz/utility/misc/DateTime.hpp... Parsing file /<>/pwiz/utility/misc/DateTime.hpp... Preprocessing /<>/pwiz/utility/misc/DateTimeTest.cpp... Parsing file /<>/pwiz/utility/misc/DateTimeTest.cpp... Preprocessing /<>/pwiz/utility/misc/endian.hpp... Parsing file /<>/pwiz/utility/misc/endian.hpp... Preprocessing /<>/pwiz/utility/misc/endian_test.cpp... Parsing file /<>/pwiz/utility/misc/endian_test.cpp... Preprocessing /<>/pwiz/utility/misc/Environment.hpp... Parsing file /<>/pwiz/utility/misc/Environment.hpp... Preprocessing /<>/pwiz/utility/misc/Exception.hpp... Parsing file /<>/pwiz/utility/misc/Exception.hpp... Preprocessing /<>/pwiz/utility/misc/ExceptionTest.cpp... Parsing file /<>/pwiz/utility/misc/ExceptionTest.cpp... Preprocessing /<>/pwiz/utility/misc/Export.hpp... Parsing file /<>/pwiz/utility/misc/Export.hpp... Preprocessing /<>/pwiz/utility/misc/FailTest.cpp... Parsing file /<>/pwiz/utility/misc/FailTest.cpp... Preprocessing /<>/pwiz/utility/misc/Filesystem.hpp... Parsing file /<>/pwiz/utility/misc/Filesystem.hpp... Preprocessing /<>/pwiz/utility/misc/FilesystemTest.cpp... Parsing file /<>/pwiz/utility/misc/FilesystemTest.cpp... Preprocessing /<>/pwiz/utility/misc/Image.hpp... Parsing file /<>/pwiz/utility/misc/Image.hpp... Preprocessing /<>/pwiz/utility/misc/IntegerSet.hpp... Parsing file /<>/pwiz/utility/misc/IntegerSet.hpp... Preprocessing /<>/pwiz/utility/misc/IntegerSetTest.cpp... Parsing file /<>/pwiz/utility/misc/IntegerSetTest.cpp... Preprocessing /<>/pwiz/utility/misc/IterationListener.hpp... Parsing file /<>/pwiz/utility/misc/IterationListener.hpp... Preprocessing /<>/pwiz/utility/misc/IterationListenerTest.cpp... Parsing file /<>/pwiz/utility/misc/IterationListenerTest.cpp... Preprocessing /<>/pwiz/utility/misc/mru_list.hpp... Parsing file /<>/pwiz/utility/misc/mru_list.hpp... Preprocessing /<>/pwiz/utility/misc/mru_list_test.cpp... Parsing file /<>/pwiz/utility/misc/mru_list_test.cpp... Preprocessing /<>/pwiz/utility/misc/MSIHandler.hpp... Parsing file /<>/pwiz/utility/misc/MSIHandler.hpp... Preprocessing /<>/pwiz/utility/misc/Once.hpp... Parsing file /<>/pwiz/utility/misc/Once.hpp... Preprocessing /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Parsing file /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Preprocessing /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Parsing file /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1.h... Parsing file /<>/pwiz/utility/misc/SHA1.h... Preprocessing /<>/pwiz/utility/misc/SHA1_ostream.hpp... Parsing file /<>/pwiz/utility/misc/SHA1_ostream.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Parsing file /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Preprocessing /<>/pwiz/utility/misc/SHA1Calculator.hpp... Parsing file /<>/pwiz/utility/misc/SHA1Calculator.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Parsing file /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Preprocessing /<>/pwiz/utility/misc/shared_map.hpp... Parsing file /<>/pwiz/utility/misc/shared_map.hpp... Preprocessing /<>/pwiz/utility/misc/Singleton.hpp... Parsing file /<>/pwiz/utility/misc/Singleton.hpp... Preprocessing /<>/pwiz/utility/misc/Std.hpp... Parsing file /<>/pwiz/utility/misc/Std.hpp... Preprocessing /<>/pwiz/utility/misc/Stream.hpp... Parsing file /<>/pwiz/utility/misc/Stream.hpp... Preprocessing /<>/pwiz/utility/misc/String.hpp... Parsing file /<>/pwiz/utility/misc/String.hpp... Preprocessing /<>/pwiz/utility/misc/TabReader.hpp... Parsing file /<>/pwiz/utility/misc/TabReader.hpp... Preprocessing /<>/pwiz/utility/misc/TabReaderTest.cpp... Parsing file /<>/pwiz/utility/misc/TabReaderTest.cpp... Preprocessing /<>/pwiz/utility/misc/Timer.hpp... Parsing file /<>/pwiz/utility/misc/Timer.hpp... Preprocessing /<>/pwiz/utility/misc/unit.hpp... Parsing file /<>/pwiz/utility/misc/unit.hpp... Preprocessing /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Parsing file /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Preprocessing /<>/pwiz/utility/misc/virtual_map.hpp... Parsing file /<>/pwiz/utility/misc/virtual_map.hpp... Preprocessing /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Parsing file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Preprocessing /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Pars/<>/pwiz/utility/findmf/base/base/constants.hpp:28: warning: the name `Constants.h' supplied as the second argument in the \file statement is not an input file /<>/pwiz/utility/findmf/base/base/cumsum.hpp:27: warning: the name `cumsum.h' supplied as the second argument in the \file statement is not an input file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp:29: warning: the name `MassCompareFunctors.h' supplied as the second argument in the \file statement is not an input file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:42: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::frequency::FrequencyEstimatorSimple::Type() /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp:43: warning: documented symbol `enum PWIZ_API_DECL pwiz::frequency::TruncatedLorentzian::ParameterIndex' was not declared or defined. /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp:76: warning: documented symbol `enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzer::UpdateRequest' was not declared or defined. /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp:164: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzerDriver::Status() /<>/pwiz/data/common/cv.hpp:96: warning: documented symbol `enum PWIZ_API_DECL pwiz::cv::pwiz::cv::CVID' was not declared or defined. /<>/pwiz/data/common/Unimod.hpp:80: warning: member with no name found. /<>/pwiz/data/identdata/IdentDataFile.hpp:49: warning: documented symbol `enum PWIZ_API_DECL pwiz::identdata::IdentDataFile::pwiz::identdata::IdentDataFile::Format' was not declared or defined. /<>/pwiz/data/identdata/IO.hpp:211: warning: documented symbol `enum PWIZ_API_DECL pwiz::identdata::IO::AnalysisDataFlag' was not declared or defined. /<>/pwiz/data/identdata/IO.hpp:255: warning: documented symbol `enum PWIZ_API_DECL pwiz::identdata::IO::SequenceCollectionFlag' was not declared or defined. /<>/pwiz/data/misc/FrequencyData.hpp:54: warning: documented symbol `enum PWIZ_API_DECL pwiz::data::FrequencyData::IOMode' was not declared or defined. /<>/pwiz/data/msdata/IO.hpp:173: warning: documented symbol `enum PWIZ_API_DECL pwiz::msdata::IO::BinaryDataFlag' was not declared or defined. /<>/pwiz/data/msdata/IO.hpp:212: warning: documented symbol `enum PWIZ_API_DECL pwiz::msdata::IO::SpectrumListFlag' was not declared or defined. /<>/pwiz/data/msdata/MemoryMRUCache.hpp:35: warning: documented symbol `enum PWIZ_API_DECL pwiz::msdata::MemoryMRUCacheMode' was not declared or defined. /<>/pwiz/data/msdata/MSDataFile.hpp:49: warning: documented symbol `enum PWIZ_API_DECL pwiz::msdata::MSDataFile::pwiz::msdata::MSDataFile::Format' was not declared or defined. /<>/pwiz/data/proteome/AminoAcid.hpp:44: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::proteome::AminoAcid::pwiz::proteome::AminoAcid::Type() /<>/pwiz/data/proteome/Digestion.hpp:118: warning: no matching class member found for enum PWIZ_API_DECL pwiz::proteome::Digestion::pwiz::proteome::Digestion::Specificity() /<>/pwiz/data/proteome/Peptide.hpp:41: warning: documented symbol `enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationParsing' was not declared or defined. /<>/pwiz/data/proteome/Peptide.hpp:50: warning: documented symbol `enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationDelimiter' was not declared or defined. /<>/pwiz/data/proteome/ProteinListCache.hpp:37: warning: documented symbol `enum PWIZ_API_DECL pwiz::proteome::ProteinListCacheMode' was not declared or defined. /<>/pwiz/data/proteome/ProteomeDataFile.hpp:49: warning: documented symbol `enum PWIZ_API_DECL pwiz::proteome::ProteomeDataFile::pwiz::proteome::ProteomeDataFile::Format' was not declared or defined. /<>/pwiz/data/tradata/TraDataFile.hpp:45: warning: documented symbol `enum PWIZ_API_DECL pwiz::tradata::TraDataFile::pwiz::tradata::TraDataFile::Format' was not declared or defined. /<>/pwiz/utility/chemistry/Chemistry.hpp:79: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::chemistry::Element::pwiz::chemistry::Element::Type() /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp:45: warning: documented symbol `enum PWIZ_API_DECL pwiz::chemistry::IsotopeCalculator::NormalizationFlags' was not declared or defined. /<>/pwiz/utility/math/LinearLeastSquares.hpp:34: warning: documented symbol `enum PWIZ_API_DECL pwiz::math::LinearLeastSquaresType' was not declared or defined. /<>/pwiz/utility/math/LinearSolver.hpp:47: warning: documented symbol `enum PWIZ_API_DECL pwiz::math::LinearSolverType' was not declared or defined. /<>/pwiz/utility/minimxml/XMLWriter.hpp:53: warning: documented symbol `enum PWIZ_API_DECL pwiz::minimxml::XMLWriter::pwiz::minimxml::XMLWriter::StyleFlag' was not declared or defined. /<>/pwiz/utility/misc/Image.hpp:64: warning: documented symbol `enum PWIZ_API_DECL pwiz::util::Image::Align' was not declared or defined. /<>/pwiz/utility/misc/Image.hpp:65: warning: documented symbol `enum PWIZ_API_DECL pwiz::util::Image::Size' was not declared or defined. ing file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Preprocessing /<>/pwiz/Version.hpp... Parsing file /<>/pwiz/Version.hpp... Preprocessing /<>/doc/dox/mainpage.hpp... Parsing file /<>/doc/dox/mainpage.hpp... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file mainpage.hpp... Generating code for file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Generating code for file /<>/pwiz/analysis/common/DataFilter.hpp... Generating code for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Generating code for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Generating code for file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Generating code for file /<>/pwiz/analysis/common/PeakDetector.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Generating code for file /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/Smoother.hpp... Generating code for file /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Generating code for file /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Generating code for file /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Generating code for file /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Generating code for file /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxSolver.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxTypes.hpp... Generating code for file /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Generating code for file /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/IInterpolation.hpp... Generating code for file /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Generating code for file /<>/pwiz/analysis/demux/MatrixIO.hpp... Generating code for file /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Generating code for file /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Generating code for file /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Generating code for file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Generating code for file /<>/pwiz/analysis/passive/MetadataReporter.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Generating code for file /<>/pwiz/analysis/passive/MSDataCache.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Generating code for file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionSIC.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionSlice.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionTIC.hpp... Generating code for file /<>/pwiz/analysis/passive/RunSummary.hpp... Generating code for file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Generating code for file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Generating code for file /<>/pwiz/analysis/passive/TabularConfig.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/Noise.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating code for file /<>/pwiz/analysis/spectrum_process/<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /<>/pwiz/data/common/cv.hpp:4422: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4425: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:717: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:7731: warning: Found unknown command `\t' /<>/pwiz/data/common/cv.hpp:720: warning: Found unknown command `\LDI' /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found ing/SpectrumListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating code for file /<>/pwiz/analysis/Version.hpp... Generating code for file /<>/pwiz/data/identdata/Version.hpp... Generating code for file /<>/pwiz/data/msdata/Version.hpp... Generating code for file /<>/pwiz/data/proteome/Version.hpp... Generating code for file /<>/pwiz/data/tradata/Version.hpp... Generating code for file /<>/pwiz/Version.hpp... Generating code for file /<>/pwiz/data/common/BinaryIndexStream.hpp... Generating code for file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating code for file /<>/pwiz/data/common/cv.hpp... Generating code for file /<>/pwiz/data/common/cvtest.cpp... Generating code for file /<>/pwiz/data/common/CVTranslator.hpp... Generating code for file /<>/pwiz/data/common/CVTranslatorTest.cpp... Generating code for file /<>/pwiz/data/common/diff_std.hpp... Generating code for file /<>/pwiz/data/common/diff_std_test.cpp... Generating code for file /<>/pwiz/data/common/Index.hpp... Generating code for file /<>/pwiz/data/common/MemoryIndex.hpp... Generating code for file /<>/pwiz/data/common/MemoryIndexTest.cpp... Generating code for file /<>/pwiz/data/common/obo.hpp... Generating code for file /<>/pwiz/data/common/obotest.cpp... Generating code for file /<>/pwiz/data/common/ParamTypes.hpp... Generating code for file /<>/pwiz/data/common/ParamTypesTest.cpp... Generating code for file /<>/pwiz/data/common/Unimod.hpp... Generating code for file /<>/pwiz/data/common/UnimodTest.cpp... Generating code for file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/identdata/DelimReader.hpp... Generating code for file /<>/pwiz/data/identdata/DelimWriter.hpp... Generating code for file /<>/pwiz/data/identdata/Diff.hpp... Generating code for file /<>/pwiz/data/msdata/Diff.hpp... Generating code for file /<>/pwiz/data/proteome/Diff.hpp... Generating code for file /<>/pwiz/data/tradata/Diff.hpp... Generating code for file /<>/pwiz/utility/findmf/base/base/diff.hpp... Generating code for file /<>/pwiz/data/identdata/DiffTest.cpp... Generating code for file /<>/pwiz/data/msdata/DiffTest.cpp... Generating code for file /<>/pwiz/data/proteome/DiffTest.cpp... Generating code for file /<>/pwiz/data/tradata/DiffTest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/base/difftest.cpp... Generating code for file /<>/pwiz/data/identdata/examples.hpp... Generating code for file /<>/pwiz/data/msdata/examples.hpp... Generating code for file /<>/pwiz/data/proteome/examples.hpp... Generating code for file /<>/pwiz/data/tradata/examples.hpp... Generating code for file /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Generating code for file /<>/pwiz/data/identdata/IdentData.hpp... Generating code for file /<>/pwiz/data/identdata/IdentDataFile.hpp... Generating code for file /<>/pwiz/data/identdata/IdentDataTest.cpp... Generating code for file /<>/pwiz/data/identdata/IO.hpp... Generating code for file /<>/pwiz/data/msdata/IO.hpp... Generating code for file /<>/pwiz/data/tradata/IO.hpp... Generating code for file /<>/pwiz/data/identdata/IOTest.cpp... Generating code for file /<>/pwiz/data/msdata/IOTest.cpp... Generating code for file /<>/pwiz/data/tradata/IOTest.cpp... Generating code for file /<>/pwiz/data/identdata/KwCVMap.hpp... Generating code for file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Generating code for file /<>/pwiz/data/identdata/MascotReader.hpp... Generating code for file /<>/pwiz/data/identdata/MzidPredicates.hpp... Generating code for file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Generating code for file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating code for file /<>/pwiz/data/identdata/Reader.hpp... Generating code for file /<>/pwiz/data/msdata/Reader.hpp... Generating code for file /<>/pwiz/data/proteome/Reader.hpp... Generating code for file /<>/pwiz/data/tradata/Reader.hpp... Generating code for file /<>/pwiz/data/identdata/ReaderTest.cpp... Generating code for file /<>/pwiz/data/msdata/ReaderTest.cpp... Generating code for file /<>/pwiz/data/proteome/ReaderTest.cpp... Generating code for file /<>/pwiz/data/tradata/ReaderTest.cpp... Generating code for file /<>/pwiz/data/identdata/References.hpp... Generating code for file /<>/pwiz/data/msdata/References.hpp... Generating code for file /<>/pwiz/data/tradata/References.hpp... Generating code for file /<>/pwiz/data/identdata/ReferencesTest.cpp... Generating code for file /<>/pwiz/data/msdata/ReferencesTest.cpp... Generating code for file /<>/pwiz/data/tradata/ReferencesTest.cpp... Generating code for file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Generating code for file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating code for file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Generating code for file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating code for file /<>/pwiz/data/identdata/Serializer_protXML.hpp... Generating code for file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Genera/<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found ting code for file /<>/pwiz/data/identdata/Serializer_Text.hpp... Generating code for file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating code for file /<>/pwiz/data/identdata/TextWriter.hpp... Generating code for file /<>/pwiz/data/msdata/TextWriter.hpp... Generating code for file /<>/pwiz/data/proteome/TextWriter.hpp... Generating code for file /<>/pwiz/data/tradata/TextWriter.hpp... Generating code for file /<>/pwiz/data/misc/CalibrationParameters.hpp... Generating code for file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Generating code for file /<>/pwiz/data/misc/FrequencyData.hpp... Generating code for file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Generating code for file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Generating code for file /<>/pwiz/data/misc/MinimumPepXML.hpp... Generating code for file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating code for file /<>/pwiz/data/misc/PeakData.hpp... Generating code for file /<>/pwiz/data/misc/PeakDataTest.cpp... Generating code for file /<>/pwiz/data/misc/SampleDatum.hpp... Generating code for file /<>/pwiz/data/misc/SampleDatumTest.cpp... Generating code for file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating code for file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating code for file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating code for file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Generating code for file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Generating code for file /<>/pwiz/data/msdata/Index_mzML.hpp... Generating code for file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Generating code for file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Generating code for file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Generating code for file /<>/pwiz/data/msdata/MSData.hpp... Generating code for file /<>/pwiz/data/msdata/MSDataFile.hpp... Generating code for file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Generating code for file /<>/pwiz/data/msdata/MSDataMerger.hpp... Generating code for file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Generating code for file /<>/pwiz/data/msdata/MSDataTest.cpp... Generating code for file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Generating code for file /<>/pwiz/data/msdata/MSNumpress.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Generating code for file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Generating cod/<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found e for file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Generating code for file /<>/pwiz/data/proteome/AminoAcid.hpp... Generating code for file /<>/pwiz/data/proteome/AminoAcidTest.cpp... 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Generating code for file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Generating code for file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Generating code for file /<>/pwiz/data/tradata/Serializer_traML.hpp... Generating code for file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Generating code for file /<>/pwiz/data/tradata/TraData.hpp... Generating code for file /<>/pwiz/data/tradata/TraDataFile.hpp... Generating code for file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Generating code for file /<>/pwiz/data/tradata/TraDataTest.cpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Generating code for file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Generating code for file /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Generating code for file /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Generating code for file /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Generating code for file /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Generating code for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Generating code for file /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Generating code for file /<>/pwiz/utility/chemistry/Chemistry.hpp... Generating code for file /<>/pwiz/utility/chemistry/ChemistryData.hpp... Generating code for file /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Generating code for file /<>/pwiz/utility/chemistry/Ion.hpp... Generating code for file /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Generating code for file /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Generating code for file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Generating code for file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Generating code for file /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Generating code for file /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Generating code for file /<>/pwiz/utility/chemistry/MZTolerance.hpp... Generating code for file /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/base/base.hpp... Generating code for file /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Generating code for file /<>/pwiz/utility/findmf/base/base/basetest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/base/constants.hpp... Generating code for file /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/base/copyif.hpp... Generating code for file /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Generating code for file /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... 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Generating code for file /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Generating code for file /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Generating code for file /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... 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Generating code for file /<>/pwiz/utility/misc/Filesystem.hpp... Generating code for file /<>/pwiz/utility/misc/FilesystemTest.cpp... Generating code for file /<>/pwiz/utility/misc/Image.hpp... Generating code for file /<>/pwiz/utility/misc/IntegerSet.hpp... Generating code for file /<>/pwiz/utility/misc/IntegerSetTest.cpp... Generating code for file /<>/pwiz/utility/misc/IterationListener.hpp... Generating code for file /<>/pwiz/utility/misc/IterationListenerTest.cpp... Generating code for file /<>/pwiz/utility/misc/mru_list.hpp... Generating code for file /<>/pwiz/utility/misc/mru_list_test.cpp... Generating code for file /<>/pwiz/utility/misc/MSIHandler.hpp... Generating code for file /<>/pwiz/utility/misc/Once.hpp... Generating code for file /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Generating code for file /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Generating code for file /<>/pwiz/utility/misc/SHA1.h... 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Generating code for file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Generating code for file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Generating file documentation... Generating docs for file mainpage.hpp... Generating docs for file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Generating docs for file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Generating docs for file /<>/pwiz/analysis/common/DataFilter.hpp... Generating docs for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Generating docs for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Generating docs for file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Generating docs for file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Generating docs for file /<>/pwiz/analysis/common/PeakDetector.hpp... Generating docs for file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Generating docs for file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... 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Generating docs for file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Generating docs for file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Generating docs for file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Generating docs for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Generating docs for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Generating docs for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Generating docs for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Generating docs for file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Generating docs for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Generating docs for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Generating docs for file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Generating docs for file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Generating docs for file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Generating docs for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Generating docs for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Generating docs for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Generating docs for file /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Generating docs for file /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Generating docs for file /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Generating docs for file /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Generating docs for file /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Generating docs for file /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Generating docs for file /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Generating docs for file /<>/pwiz/analysis/passive/MetadataReporter.hpp... Generating docs for file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Generating docs for file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Generating docs for file /<>/pwiz/analysis/passive/MSDataCache.hpp... Generating docs for file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Generating docs for file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Generating docs for file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Generating docs for file /<>/pwiz/analysis/passive/RegionSIC.hpp... Generating docs for file /<>/pwiz/analysis/passive/RegionSlice.hpp... Generating docs for file /<>/pwiz/analysis/passive/RegionTIC.hpp... Generating docs for file /<>/pwiz/analysis/passive/RunSummary.hpp... Generating docs for file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Generating docs for file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Generating docs for file /<>/pwiz/analysis/passive/TabularConfig.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/Noise.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Generating docs for file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Generating docs for file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Generating docs for file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating docs for file /<>/pwiz/analysis/Version.hpp... Generating docs for file /<>/pwiz/data/identdata/Version.hpp... Generating docs for file /<>/pwiz/data/msdata/Version.hpp... Generating docs for file /<>/pwiz/data/proteome/Version.hpp... Generating docs for file /<>/pwiz/data/tradata/Version.hpp... Generating docs for/<>/pwiz/data/common/cv.hpp:717: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:720: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:4422: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4425: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:7731: warning: Found unknown command `\t' /<>/pwiz/data/common/cv.hpp:717: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:720: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:4422: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4425: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:7731: warning: Found unknown command `\t' file /<>/pwiz/Version.hpp... Generating docs for file /<>/pwiz/data/common/BinaryIndexStream.hpp... Generating docs for file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating docs for file /<>/pwiz/data/common/cv.hpp... Generating docs for file /<>/pwiz/data/common/cvtest.cpp... Generating docs for file /<>/pwiz/data/common/CVTranslator.hpp... Generating docs for file /<>/pwiz/data/common/CVTranslatorTest.cpp... Generating docs for file /<>/pwiz/data/common/diff_std.hpp... Generating docs for file /<>/pwiz/data/common/diff_std_test.cpp... Generating docs for file /<>/pwiz/data/common/Index.hpp... Generating docs for file /<>/pwiz/data/common/MemoryIndex.hpp... Generating docs for file /<>/pwiz/data/common/MemoryIndexTest.cpp... Generating docs for file /<>/pwiz/data/common/obo.hpp... Generating docs for file /<>/pwiz/data/common/obotest.cpp... Generating docs for file /<>/pwiz/data/common/ParamTypes.hpp... Generating docs for file /<>/pwiz/data/common/ParamTypesTest.cpp... Generating docs for file /<>/pwiz/data/common/Unimod.hpp... Generating docs for file /<>/pwiz/data/common/UnimodTest.cpp... Generating docs for file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/identdata/DelimReader.hpp... Generating docs for file /<>/pwiz/data/identdata/DelimWriter.hpp... Generating docs for file /<>/pwiz/data/identdata/Diff.hpp... Generating docs for file /<>/pwiz/data/msdata/Diff.hpp... Generating docs for file /<>/pwiz/data/proteome/Diff.hpp... Generating docs for file /<>/pwiz/data/tradata/Diff.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/diff.hpp... Generating docs for file /<>/pwiz/data/identdata/DiffTest.cpp... Generating docs for file /<>/pwiz/data/msdata/DiffTest.cpp... Generating docs for file /<>/pwiz/data/proteome/DiffTest.cpp... 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Generating docs for file /<>/pwiz/data/tradata/IOTest.cpp... Generating docs for file /<>/pwiz/data/identdata/KwCVMap.hpp... Generating docs for file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Generating docs for file /<>/pwiz/data/identdata/MascotReader.hpp... Generating docs for file /<>/pwiz/data/identdata/MzidPredicates.hpp... Generating docs for file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Generating docs for file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating docs for file /<>/pwiz/data/identdata/Reader.hpp... Generating docs for file /<>/pwiz/data/msdata/Reader.hpp... Generating docs for file /<>/pwiz/data/proteome/Reader.hpp... Generating docs for file /<>/pwiz/data/tradata/Reader.hpp... Generating docs for file /<>/pwiz/data/identdata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/tradata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/identdata/References.hpp... Generating docs for file /<>/pwiz/data/msdata/References.hpp... Generating docs for file /<>/pwiz/data/tradata/References.hpp... Generating docs for file /<>/pwiz/data/identdata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/tradata/ReferencesTest.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_protXML.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_Text.hpp... Generating docs for file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/msdata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/proteome/TextWriter.hpp... Generating docs for file /<>/pwiz/data/tradata/TextWriter.hpp... Generating docs for file /build/libpwiz-d22/<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' bHf/libpwiz-3.0.10827/pwiz/data/misc/CalibrationParameters.hpp... Generating docs for file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Generating docs for file /<>/pwiz/data/misc/FrequencyData.hpp... Generating docs for file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Generating docs for file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Generating docs for file /<>/pwiz/data/misc/MinimumPepXML.hpp... Generating docs for file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating docs for file /<>/pwiz/data/misc/PeakData.hpp... Generating docs for file /<>/pwiz/data/misc/PeakDataTest.cpp... Generating docs for file /<>/pwiz/data/misc/SampleDatum.hpp... Generating docs for file /<>/pwiz/data/misc/SampleDatumTest.cpp... Generating docs for file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating docs for file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Generating docs for file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Generating docs for file /<>/pwiz/data/msdata/Index_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Generating docs for file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Generating docs for file /<>/pwiz/data/msdata/MSData.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataFile.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSDataMerger.hpp... Generating docs for file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSDataTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/MSNumpress.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Generating docs for file /<>/pwiz/data/proteome/AminoAcid.hpp... Generating docs for file /<>/pwiz/data/proteome/AminoAcidTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Digestion.hpp... Generating docs for file /<>/pwiz/data/proteome/DigestionTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Modification.hpp... Generating docs for file /<>/pwiz/data/proteome/Peptide.hpp... Generating docs for file /<>/pwiz/data/proteome/PeptideTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListCache.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeData.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Generating docs for file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Generating docs for file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Generating docs for file /<>/pwiz/data/tradata/Serializer_traML.hpp... Generating docs for file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Generating docs for file /<>/pwiz/data/tradata/TraData.hpp... Generating docs for file /<>/pwiz/data/tradata/TraDataFile.hpp... Generating docs for file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Generating docs for file /<>/pwiz/data/tradata/TraDataTest.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Generating docs for file /<>/pwiz/utility/chemistry/Chemistry.hpp... Generating docs for file /<>/pwiz/utility/chemistry/ChemistryData.hpp... Generating docs for file /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/Ion.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Generating docs for file /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Generating docs for file /<>/pwiz/utility/chemistry/MZTolerance.hpp... Generating docs for file /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/base.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/basetest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/constants.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/copyif.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/scale.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/filter.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Generating docs for file /<>/pwiz/utility/math/erf.hpp... Generating docs for file /<>/pwiz/utility/math/erfTest.cpp... Generating docs for file /<>/pwiz/utility/math/HouseholderQR.hpp... Generating docs for file /<>/pwiz/utility/math/HouseholderQRTest.cpp... Generating docs for file /<>/pwiz/utility/math/LinearLeastSquares.hpp... Generating docs for file /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Generating docs for file /<>/pwiz/utility/math/LinearSolver.hpp... Generating docs for file /<>/pwiz/utility/math/LinearSolverTest.cpp... Generating docs for file /<>/pwiz/utility/math/MatchedFilter.hpp... Generating docs for file /<>/pwiz/utility/math/MatchedFilterTest.cpp... Generating docs for file /<>/pwiz/utility/math/MatrixInverse.hpp... Generating docs for file /<>/pwiz/utility/math/OrderedPair.hpp... Generating docs for file /<>/pwiz/utility/math/OrderedPairTest.cpp... Generating docs for file /<>/pwiz/utility/math/Parabola.hpp... Generating docs for file /<>/pwiz/utility/math/ParabolaTest.cpp... Generating docs for file /<>/pwiz/utility/math/qr.hpp... Generating docs for file /<>/pwiz/utility/math/qrTest.cpp... Generating docs for file /<>/pwiz/utility/math/round.hpp... Generating docs for file /<>/pwiz/utility/math/Stats.hpp... Generating docs for file /<>/pwiz/utility/math/StatsTest.cpp... Generating docs for file /<>/pwiz/utility/math/Types.hpp... Generating docs for file /<>/pwiz/utility/minimxml/SAXParser.hpp... Generating docs for file /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Generating docs for file /<>/pwiz/utility/minimxml/XMLWriter.hpp... Generating docs for file /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Generating docs for file /<>/pwiz/utility/misc/almost_equal.hpp... Generating docs for file /<>/pwiz/utility/misc/almost_equal_test.cpp... Generating docs for file /<>/pwiz/utility/misc/Base64.hpp... 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Generating docs for file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Generating docs for file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AnotherRootHandler... Generating docs for compound BadListener... Generating docs for compound CancelListener... Generating docs for compound CancelProgressCallback... Generating docs for compound CSHA1... Generating docs for compound CubicHermiteSplineTest... Generating docs for compound CustomPair... Generating docs for compound Datum... Generating docs for compound DefaultArrayLengthSorter... Generating docs for compound DemuxDebugRWTest... Generating docs for compound DemuxHelpersTest... Generating docs for compound DemuxSolverTest... Generating docs for compound DemuxTest... Generating docs for nested compound DemuxTest::MSDPair... Generating docs for compound DigestedPeptideLessThan... 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Generating docs for compound TestDeisotopeCalculator... Generating docs for compound TestDeisotoper... Generating docs for compound TestETDMassFilter... Generating docs for compound TestFormula... Generating docs for compound TestFragmentation... Generating docs for compound TestInfo... Generating docs for compound TestIterationListener... Generating docs for compound TestIterationListener_WithCancel... Generating docs for compound TestListener... Generating docs for compound TestMetadataFixer... Generating docs for compound TestModification... Generating docs for compound TestModifiedPeptide... Generating docs for compound TestMS2Denoise... Generating docs for compound TestOperator... Generating docs for compound TestOutputObserver... Generating docs for compound TestPair... Generating docs for compound TestPathmask... Generating docs for compound TestPeptide... Generating docs for compound TestReader... Generating docs for compound TestScanSummerCalculator... Generating docs for compound TestSpectrumInfo... Generating docs for compound TestThresholder... Generating docs for compound ThreadStatus... Generating docs for compound UserParamNameIs... Generating docs for compound WriteCVParam... Generating namespace index... Generating docs for namespace boost Generating docs for namespace boost::date_time Generating docs for namespace DemuxTypes Generating docs for namespace pwiz Generating docs for compound pwiz::Version... Generating docs for namespace pwiz::analysis Generating docs for compound pwiz::analysis::analyzer_strings... Generating docs for compound pwiz::analysis::analyzer_strings< MetadataReporter >... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSIC >... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSlice >... Generating docs for compound pwiz::analysis::analyzer_strings< RegionTIC >... Generating docs for compound pwiz::analysis::analyzer_strings< RunSummary >... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumBinaryData >... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumTable >... Generating docs for compound pwiz::analysis::ChromatogramDataFilter... Generating docs for compound pwiz::analysis::CubicHermiteSpline... Generating docs for compound pwiz::analysis::CwtPeakDetector... Generating docs for compound pwiz::analysis::DemuxDebugReader... Generating docs for compound pwiz::analysis::DemuxDebugWriter... Generating docs for compound pwiz::analysis::DemuxSolver... Generating docs for compound pwiz::analysis::DemuxWindow... Generating docs for compound pwiz::analysis::ExtraZeroSamplesFilter... Generating docs for compound pwiz::analysis::FeatureDetector... Generating docs for compound pwiz::analysis::FeatureDetectorPeakel... Generating docs for nested compound pwiz::analysis::FeatureDetectorPeakel::Config... Generating docs for compound pwiz::analysis::FeatureDetectorSimple... 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Generating docs for nested compound pwiz::analysis::MSDataAnalyzer::DataInfo... Generating docs for compound pwiz::analysis::MSDataAnalyzerContainer... Generating docs for compound pwiz::analysis::MSDataAnalyzerDriver... Generating docs for nested compound pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback... Generating docs for compound pwiz::analysis::MSDataCache... Generating docs for nested compound pwiz::analysis::MSDataCache::Config... Generating docs for compound pwiz::analysis::MSXDemultiplexer... Generating docs for nested compound pwiz::analysis::MSXDemultiplexer::Params... Generating docs for compound pwiz::analysis::MZRTField... Generating docs for compound pwiz::analysis::NNLSSolver... Generating docs for compound pwiz::analysis::Noise... Generating docs for compound pwiz::analysis::NoiseCalculator... Generating docs for compound pwiz::analysis::NoiseCalculator_2Pass... Generating docs for nested compound pwiz::analysis::NoiseCalculator_2Pass::Config... Generating docs for compound pwiz::analysis::NoVendorPeakPickingException... Generating docs for compound pwiz::analysis::OverlapDemultiplexer... Generating docs for nested compound pwiz::analysis::OverlapDemultiplexer::Params... Generating docs for compound pwiz::analysis::Peak... Generating docs for compound pwiz::analysis::PeakDetector... Generating docs for compound pwiz::analysis::PeakelGrower... Generating docs for compound pwiz::analysis::PeakelGrower_Proximity... Generating docs for nested compound pwiz::analysis::PeakelGrower_Proximity::Config... Generating docs for compound pwiz::analysis::PeakelPicker... Generating docs for compound pwiz::analysis::PeakelPicker_Basic... Generating docs for nested compound pwiz::analysis::PeakelPicker_Basic::Config... Generating docs for compound pwiz::analysis::PeakExtractor... Generating docs for compound pwiz::analysis::PeakFamilyDetector... Generating docs for compound pwiz::analysis::PeakFamilyDetectorFT... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::Config... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::NoDataException... Generating docs for compound pwiz::analysis::PeakFinder... Generating docs for compound pwiz::analysis::PeakFinder_SNR... Generating docs for nested compound pwiz::analysis::PeakFinder_SNR::Config... Generating docs for compound pwiz::analysis::PeakFitter... Generating docs for compound pwiz::analysis::PeakFitter_Parabola... Generating docs for nested compound pwiz::analysis::PeakFitter_Parabola::Config... Generating docs for compound pwiz::analysis::PepxmlRecordReader... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::Config... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::record... Generating docs for compound pwiz::analysis::PrecursorMaskCodec... Generating docs for nested compound pwiz::analysis::PrecursorMaskCodec::DemuxBoundary... Generating docs for compound pwiz::analysis::PrecursorMassFilter... Generating docs for nested compound pwiz::analysis::PrecursorMassFilter::Config... Generating docs for compound pwiz::analysis::PrecursorRecalculator... Generating docs for nested compound pwiz::analysis::PrecursorRecalculator::PrecursorInfo... Generating docs for compound pwiz::analysis::PrecursorRecalculatorDefault... Generating docs for nested compound pwiz::analysis::PrecursorRecalculatorDefault::Config... Generating docs for compound pwiz::analysis::ProteinList_DecoyGenerator... Generating docs for nested compound pwiz::analysis::ProteinList_DecoyGenerator::Predicate... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled... Generating docs for compound pwiz::analysis::ProteinList_Filter... Generating docs for nested compound pwiz::analysis::ProteinList_Filter::Predicate... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ProteinListFactory... Generating docs for compound pwiz::analysis::RegionAnalyzer... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Config... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::SpectrumStats... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Stats... Generating docs for compound pwiz::analysis::RegionSIC... Generating docs for nested compound pwiz::analysis::RegionSIC::Config... Generating docs for compound pwiz::analysis::RegionSlice... Generating docs for nested compound pwiz::analysis::RegionSlice::Config... Generating docs for compound pwiz::analysis::RegionTIC... Generating docs for nested compound pwiz::analysis::RegionTIC::Config... Generating docs for compound pwiz::analysis::RTMatches_Any... Generating docs for compound pwiz::analysis::RTMatches_Contains... Generating docs for compound pwiz::analysis::RTMatches_IsContainedIn... Generating docs for compound pwiz::analysis::RunSummary... Generating docs for nested compound pwiz::analysis::RunSummary::Config... Generating docs for compound pwiz::analysis::SavitzkyGolaySmoother... Generating docs for compound pwiz::analysis::Smoother... Generating docs for compound pwiz::analysis::SpectrumBinaryData... Generating docs for nested compound pwiz::analysis::SpectrumBinaryData::Config... Generating docs for compound pwiz::analysis::SpectrumDataFilter... Generating docs for compound pwiz::analysis::SpectrumList_3D... Generating docs for compound pwiz::analysis::SpectrumList_ChargeFromIsotope... Generating docs for compound pwiz::analysis::SpectrumList_ChargeStateCalculator... Generating docs for compound pwiz::analysis::SpectrumList_Demux... Generating docs for nested compound pwiz::analysis::SpectrumList_Demux::Params... Generating docs for compound pwiz::analysis::SpectrumList_Filter... Generating docs for nested compound pwiz::analysis::SpectrumList_Filter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ActivationType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MzPresent... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_Polarity... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter... Generating docs for compound pwiz::analysis::SpectrumList_IonMobility... Generating docs for compound pwiz::analysis::SpectrumList_LockmassRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MetadataFixer... Generating docs for compound pwiz::analysis::SpectrumList_MZRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MZWindow... Generating docs for compound pwiz::analysis::SpectrumList_PeakFilter... Generating docs for compound pwiz::analysis::SpectrumList_PeakPicker... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRecalculator... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRefine... Generating docs for nested compound pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo... Generating docs for compound pwiz::analysis::SpectrumList/<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:37: warning: argument 'ppmError' of command @param is not found in the argument list of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:42: warning: The following parameters of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) are not documented: parameter 'massError' /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:61: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:62: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:63: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/data/common/diff_std.hpp:125: warning: expected whitespace after . command _ScanSummer... Generating docs for compound pwiz::analysis::SpectrumList_Smoother... Generating docs for compound pwiz::analysis::SpectrumList_Sorter... Generating docs for nested compound pwiz::analysis::SpectrumList_Sorter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_SorterPredicate_ScanStartTime... Generating docs for compound pwiz::analysis::SpectrumList_TitleMaker... Generating docs for compound pwiz::analysis::SpectrumList_ZeroSamplesFilter... Generating docs for compound pwiz::analysis::SpectrumListFactory... Generating docs for compound pwiz::analysis::SpectrumPeakExtractor... Generating docs for compound pwiz::analysis::SpectrumTable... Generating docs for nested compound pwiz::analysis::SpectrumTable::Config... Generating docs for compound pwiz::analysis::TabularConfig... Generating docs for compound pwiz::analysis::ThresholdFilter... Generating docs for compound pwiz::analysis::Version... Generating docs for compound pwiz::analysis::WhittakerSmoother... Generating docs for compound pwiz::analysis::ZeroSampleFiller... Generating docs for namespace pwiz::chemistry Generating docs for compound pwiz::chemistry::Formula... Generating docs for compound pwiz::chemistry::IsotopeCalculator... Generating docs for compound pwiz::chemistry::IsotopeEnvelopeEstimator... Generating docs for nested compound pwiz::chemistry::IsotopeEnvelopeEstimator::Config... Generating docs for compound pwiz::chemistry::IsotopeTable... Generating docs for compound pwiz::chemistry::MassAbundance... Generating docs for compound pwiz::chemistry::MZTolerance... Generating docs for namespace pwiz::chemistry::detail Generating docs for compound pwiz::chemistry::detail::Element... Generating docs for compound pwiz::chemistry::detail::Isotope... Generating docs for namespace pwiz::chemistry::Element Generating docs for namespace pwiz::chemistry::Element::Info Generating docs for compound pwiz::chemistry::Element::Info::Record... Generating docs for namespace pwiz::chemistry::Ion Generating docs for namespace pwiz::cv Generating docs for compound pwiz::cv::CV... Generating docs for compound pwiz::cv::CVTermInfo... Generating docs for namespace pwiz::data Generating docs for compound pwiz::data::BaseDiffConfig... Generating docs for compound pwiz::data::BinaryIndexStream... Generating docs for compound pwiz::data::CalibrationParameters... Generating docs for compound pwiz::data::CVParam... Generating docs for compound pwiz::data::CVParamIs... Generating docs for compound pwiz::data::CVParamIsChildOf... Generating docs for compound pwiz::data::CVTranslator... Generating docs for compound pwiz::data::Diff... Generating docs for compound pwiz::data::FrequencyData... Generating docs for compound pwiz::data::Index... Generating docs for nested compound pwiz::data::Index::Entry... Generating docs for compound pwiz::data::MemoryIndex... Generating docs for compound pwiz::data::OBO... Generating docs for compound pwiz::data::ParamContainer... Generating docs for compound pwiz::data::ParamGroup... Generating docs for compound pwiz::data::SampleDatum... Generating docs for compound pwiz::data::Term... Generating docs for compound pwiz::data::UserParam... Generating docs for namespace pwiz::data::diff_impl Generating docs for compound pwiz::data::diff_impl::HasID... Generating docs for compound pwiz::data::diff_impl::Same... Generating docs for compound pwiz::data::diff_impl::SameDeep... Generating docs for namespace pwiz::data::peakdata Generating docs for compound pwiz::data::peakdata::Feature... Generating docs for compound pwiz::data::peakdata::FeatureFile... Generating docs for compound pwiz::data::peakdata::HandlerFeature... Generating docs for compound pwiz::data::peakdata::HandlerPeak... Generating docs for compound pwiz::data::peakdata::HandlerPeakel... Generating docs for compound pwiz::data::peakdata::Peak... Generating docs for compound pwiz::data::peakdata::PeakData... Generating docs for compound pwiz::data::peakdata::Peakel... Generating docs for compound pwiz::data::peakdata::PeakFamily... Generating docs for compound p/<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' wiz::data::peakdata::Scan... Generating docs for compound pwiz::data::peakdata::Software... Generating docs for nested compound pwiz::data::peakdata::Software::Parameter... Generating docs for namespace pwiz::data::pepxml Generating docs for compound pwiz::data::pepxml::AlternativeProtein... Generating docs for compound pwiz::data::pepxml::AminoAcidModification... Generating docs for compound pwiz::data::pepxml::AnalysisResult... Generating docs for compound pwiz::data::pepxml::AnalysisSummary... Generating docs for compound pwiz::data::pepxml::AnalysisTimestamp... Generating docs for compound pwiz::data::pepxml::DataFilter... Generating docs for compound pwiz::data::pepxml::DatasetDerivation... Generating docs for compound pwiz::data::pepxml::DistributionPoint... Generating docs for compound pwiz::data::pepxml::EnzymaticSearchConstraint... Generating docs for compound pwiz::data::pepxml::ErrorPoint... Generating docs for compound pwiz::data::pepxml::Match... Generating docs for compound pwiz::data::pepxml::MatchData... Generating docs for compound pwiz::data::pepxml::MixtureModel... Generating docs for compound pwiz::data::pepxml::ModAminoAcidMass... Generating docs for compound pwiz::data::pepxml::ModificationInfo... Generating docs for compound pwiz::data::pepxml::MSMSPipelineAnalysis... Generating docs for compound pwiz::data::pepxml::MSMSRunSummary... Generating docs for compound pwiz::data::pepxml::Parameter... Generating docs for compound pwiz::data::pepxml::PeptideProphetResult... Generating docs for compound pwiz::data::pepxml::PeptideProphetSummary... Generating docs for compound pwiz::data::pepxml::Q3RatioResult... Generating docs for compound pwiz::data::pepxml::RocDataPoint... Generating docs for compound pwiz::data::pepxml::SampleEnzyme... Generating docs for compound pwiz::data::pepxml::SearchDatabase... Generating docs for compound pwiz::data::pepxml::SearchHit... Generating docs for compound pwiz::data::pepxml::SearchResult... Generating docs for compound pwiz::data::pepxml::SearchScore... Generating docs for compound pwiz::data::pepxml::SearchSummary... Generating docs for compound pwiz::data::pepxml::Specificity... Generating docs for compound pwiz::data::pepxml::SpectrumQuery... Generating docs for namespace pwiz::data::SampleDatumConstant Generating docs for namespace pwiz::data::unimod Generating docs for namespace pwiz::frequency Generating docs for compound pwiz::frequency::FrequencyEstimator... Generating docs for compound pwiz::frequency::FrequencyEstimatorPhysicalModel... Generating docs for nested compound pwiz::frequency::FrequencyEstimatorPhysicalModel::Config... Generating docs for compound pwiz::frequency::FrequencyEstimatorSimple... Generating docs for compound pwiz::frequency::MagnitudeLorentzian... Generating docs for compound pwiz::frequency::ParameterEstimator... Generating docs for compound pwiz::frequency::ParametrizedFunction... Generating docs for nested compound pwiz::frequency::ParametrizedFunction::ErrorFunction... Generating docs for compound pwiz::frequency::PeakDetector... Generating docs for compound pwiz::frequency::PeakDetectorMatchedFilter... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Config... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Score... Generating docs for compound pwiz::frequency::PeakDetectorNaive... Generating docs for compound pwiz::frequency::TruncatedLorentzian... Generating docs for compound pwiz::frequency::TruncatedLorentzianEstimator... Generating docs for compound pwiz::frequency::TruncatedLorentzianParameters... Generating docs for namespace pwiz::frequency::DerivativeTest Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorDerivative... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice... Generating docs for compound pwiz::frequency::DerivativeTest::VectorFunction... Generating docs for namespace pwiz::identdata Generating docs for compound pwiz::identdata::AmbiguousResidue... Generating docs for compound pwiz::identdata::AnalysisCollection... Generating docs for compound pwiz::identdata::AnalysisData... Generating docs for compound pwiz::identdata::AnalysisProtocolCollection... Generating docs for compound pwiz::identdata::AnalysisSampleCollection... Generating docs for compound pwiz::identdata::AnalysisSoftware... Generating docs for compound pwiz::identdata::BibliographicReference... Generating docs for compound pwiz::identdata::Contact... Generating docs for compound pwiz::identdata::ContactRole... Generating docs for compound pwiz::identdata::CVIDMatchCVMap... Generating docs for compound pwiz::identdata::CVMap... Generating docs for compound pwiz::identdata::DatabaseTranslation... Generating docs for compound pwiz::identdata::DataCollection... Generating docs for compound pwiz::identdata::DBSequence... Generating docs for compound pwiz::identdata::dbsequence_p... Generating docs for compound pwiz::identdata::DefaultReaderList... Generating docs for compound pwiz::identdata::DelimReader... Generating docs for compound pwiz::identdata::DelimWriter... Generating docs for compound pwiz::identdata::DiffConfig... Generating docs for compound pwiz::identdata::Enzyme... Generating docs for compound pwiz::identdata::Enzymes... Generating docs for compound pwiz::identdata::Filter... Generating docs for compound pwiz::identdata::FragmentArray... Generating docs for compound pwiz::identdata::id_p... Generating docs for compound pwiz::identdata::IdentData... Generating docs for compound pwiz::identdata::IdentDataFile... Generating docs for nested compound pwiz::identdata::IdentDataFile::WriteConfig... Generating docs for compound pwiz::identdata::Identifiable... Generating docs for compound pwiz::identdata::IdentifiableParamContainer... Generating docs for compound pwiz::identdata::Inputs... Generating docs for compound pwiz::identdata::IonType... Generating docs for compound pwiz::identdata::MascotReader... Generating docs for compound pwiz::identdata::MassTable... Generating docs for compound pwiz::identdata::Measure... Generating docs for compound pwiz::identdata::Modification... Generating docs for compound pwiz::identdata::Organization... Generating docs for compound pwiz::identdata::organization_p... Generating docs for compound pwiz::identdata::Pep2MzIdent... Generating docs for compound pwiz::identdata::Peptide... Generating docs for compound pwiz::identdata::PeptideEvidence... Generating docs for compound pwiz::identdata::PeptideHypothesis... Generating docs for compound pwiz::identdata::PepXMLSpecificity... Generating docs for compound pwiz::identdata::Person... Generating docs for compound pwiz::identdata::person_p... Generating docs for compound pwiz::identdata::ProteinAmbiguityGroup... Generating docs for compound pwiz::identdata::ProteinDetection... Generating docs for compound pwiz::identdata::ProteinDetectionHypothesis... Generating docs for compound pwiz::identdata::ProteinDetectionList... Generating docs for compound pwiz::identdata::ProteinDetectionProtocol... Generating docs for compound pwiz::identdata::Provider... Generating docs for compound pwiz::identdata::Reader... Generating docs for nested compound pwiz::identdata::Reader::Config... Generating docs for compound pwiz::identdata::ReaderFail... Generating docs for compound pwiz::identdata::ReaderList... Generating docs for compound pwiz::identdata::RegexCVMap... Generating docs for compound pwiz::identdata::Residue... Generating docs for compound pwiz::identdata::Sample... Generating docs for compound pwiz::identdata::SearchDatabase... Generating docs for compound pwiz::identdata::SearchModification... Generating docs for compound pwiz::identdata::seq_p... Generating docs for compound pwiz::identdata::sequence_p... Generating docs for compound pwiz::identdata::SequenceCollection... Generating docs for compound pwiz::identdata::Serializer_mzIdentML... Generating docs for nested compound pwiz::identdata::Serializer_mzIdentML::Config... Generating docs for compound pwiz::identdata::Serializer_pepXML... Generating docs for nested compound pwiz::identdata::Serializer_pepXML::Config... Generating docs for compound pwiz::identdata::Serializer_protXML... Generating docs for nested compound pwiz::identdata::Serializer_protXML::Config... Generating docs for compound pwiz::identdata::Serializer_Text... Generating docs for nested compound pwiz::identdata::Serializer_Text::Config... Generating docs for compound pwiz::identdata::software_p... Generating docs for compound pwiz::identdata::SourceFile... Generating docs for compound pwiz::identdata::SpectraData... Generating docs for compound pwiz::identdata::SpectrumIdentification... Generating docs for compound pwiz::identdata::SpectrumIdentificationItem... Generating docs for compound pwiz::identdata::SpectrumIdentificationList... Generating docs for compound pwiz::identdata::SpectrumIdentificationProtocol... Generating docs for compound pwiz::identdata::SpectrumIdentificationResult... Generating docs for compound pwiz::identdata::StringMatchCVMap... Generating docs for compound pwiz::identdata::SubstitutionModification... Generating docs for compound pwiz::identdata::TextWriter... Generating docs for compound pwiz::identdata::TranslationTable... Generating docs for compound pwiz::identdata::Version... Generating docs for namespace pwiz::identdata::examples Generating docs for namespace pwiz::identdata::IO Generating docs for namespace pwiz::identdata::References Generating docs for namespace pwiz::math Generating docs for compound pwiz::math::LinearLeastSquares... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_LU >... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_QR >... Generating docs for compound pwiz::math::LinearSolver... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_LU >... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_QR >... Generating docs for compound pwiz::math::OrderedPair... Generating docs for compound pwiz::math::OrderedPairContainerRef... Generating docs for compound pwiz::math::Parabola... Generating docs for compound pwiz::math::Stats... Generating docs for namespace pwiz::math::MatchedFilter Generating docs for compound pwiz::math::MatchedFilter::Correlation... Generating docs for compound pwiz::math::MatchedFilter::KernelTraits... Generating docs for nested compound pwiz::math::MatchedFilter::KernelTraits::Dummy... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase< Y(*)(X)>... Generating docs for compound pwiz::math::MatchedFilter::ProductSpace... Generating docs for compound pwiz::math::MatchedFilter::SampledData... Generating docs for namespace pwiz::math::MatchedFilter::details Generating docs for namespace pwiz::math::types Generating docs for namespace pwiz::minimxml Generating docs for compound pwiz::minimxml::basic_charcounter... Generating docs for nested compound pwiz::minimxml::basic_charcounter::category... Generating docs for compound pwiz::minimxml::XMLWriter... Generating docs for nested compound pwiz::minimxml::XMLWriter::Attributes... Generating docs for nested compound pwiz::minimxml::XMLWriter::Config... Generating docs for nested compound pwiz::minimxml::XMLWriter::OutputObserver... Generating docs for namespace pwiz::minimxml::SAXParser Generating docs for compound pwiz::minimxml::SAXParser::Handler... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes::attribute... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Status... Generating docs for compound pwiz::minimxml::SAXParser::saxstring... Generating docs for namespace pwiz::msdata Generating docs for compound pwiz::msdata::Activation... Generating docs for compound pwiz::msdata::BinaryDataArray... Generating docs for/<>/pwiz/data/msdata/LegacyAdapter.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/LegacyAdapter.hpp:91: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:854: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:854: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:854: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found compound pwiz::msdata::BinaryDataEncoder... Generating docs for nested compound pwiz::msdata::BinaryDataEncoder::Config... Generating docs for compound pwiz::msdata::Chromatogram... Generating docs for compound pwiz::msdata::ChromatogramIdentity... Generating docs for compound pwiz::msdata::ChromatogramList... Generating docs for compound pwiz::msdata::ChromatogramList_mzML... Generating docs for compound pwiz::msdata::ChromatogramListBase... Generating docs for compound pwiz::msdata::ChromatogramListSimple... Generating docs for compound pwiz::msdata::Component... Generating docs for compound pwiz::msdata::ComponentList... Generating docs for compound pwiz::msdata::Contact... Generating docs for compound pwiz::msdata::DataProcessing... Generating docs for compound pwiz::msdata::DefaultReaderList... Generating docs for compound pwiz::msdata::DiffConfig... Generating docs for compound pwiz::msdata::ExtendedReaderList... Generating docs for compound pwiz::msdata::FileContent... Generating docs for compound pwiz::msdata::FileDescription... Generating docs for compound pwiz::msdata::Index_mzML... Generating docs for compound pwiz::msdata::IndexList... Generating docs for compound pwiz::msdata::InstrumentConfiguration... Generating docs for compound pwiz::msdata::IsolationWindow... Generating docs for compound pwiz::msdata::LegacyAdapter_Instrument... Generating docs for compound pwiz::msdata::LegacyAdapter_Software... Generating docs for compound pwiz::msdata::MemoryMRUCache... Generating docs for compound pwiz::msdata::MSData... Generating docs for compound pwiz::msdata::MSDataFile... Generating docs for nested compound pwiz::msdata::MSDataFile::WriteConfig... Generating docs for compound pwiz::msdata::MSDataMerger... Generating docs for compound pwiz::msdata::MSnHeader... Generating docs for compound pwiz::msdata::MZIntensityPair... Generating docs for compound pwiz::msdata::Precursor... Generating docs for compound pwiz::msdata::ProcessingMethod... Generating docs for compound pwiz::msdata::Product... Generating docs for compound pwiz::msdata::Reader... Generating docs for nested compound pwiz::msdata::Reader::Config... Generating docs for compound pwiz::msdata::Reader_ABI... Generating docs for compound pwiz::msdata::Reader_ABI_T2D... Generating docs for compound pwiz::msdata::Reader_Agilent... Generating docs for compound pwiz::msdata::Reader_Bruker... Generating docs for compound pwiz::msdata::Reader_BTDX... Generating docs for compound pwiz::msdata::Reader_MGF... Generating docs for compound pwiz::msdata::Reader_MSn... Generating docs for compound pwiz::msdata::Reader_mz5... Generating docs for compound pwiz::msdata::Reader_mzML... Generating docs for compound pwiz::msdata::Reader_mzXML... Generating docs for compound pwiz::msdata::Reader_Shimadzu... Generating docs for compound pwiz::msdata::Reader_Thermo... Generating docs for compound pwiz::msdata::Reader_UIMF... Generating docs for compound pwiz::msdata::Reader_Waters... Generating docs for compound pwiz::msdata::ReaderFail... Generating docs for compound pwiz::msdata::ReaderList... Generating docs for compound pwiz::msdata::Run... Generating docs for compound pwiz::msdata::Sample... Generating docs for compound pwiz::msdata::Scan... Generating docs for compound pwiz::msdata::ScanList... Generating docs for compound pwiz::msdata::ScanSettings... Generating docs for compound pwiz::msdata::ScanWindow... Generating docs for compound pwiz::msdata::SelectedIon... Generating docs for compound pwiz::msdata::Serializer_MGF... Generating docs for compound pwiz::msdata::Serializer_MSn... Generating docs for compound pwiz::msdata::Serializer_mzML... Generating docs for nested compound pwiz::msdata::Serializer_mzML::Config... Generating docs for compound pwiz::msdata::Serializer_mzXML... Generating docs for nested compound pwiz::msdata::Serializer_mzXML::Config... Generating docs for compound pwiz::msdata::SHA1OutputObserver... Generating docs for compound pwiz::msdata::Software... Generating docs for compound pwiz::msdata::SourceFile... Generating docs for compound pwiz::ms/<>/pwiz/data/msdata/MSNumpress.hpp:73: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:74: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:76: warning: Found unknown command `\fixedPoint' /<>/pwiz/data/msdata/MSNumpress.hpp:89: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:110: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:111: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:121: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:139: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:140: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:151: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:163: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:164: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:175: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:202: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:203: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:216: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:227: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:228: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:240: warning: Found unknown command `\data' data::Spectrum... Generating docs for compound pwiz::msdata::SpectrumIdentity... Generating docs for compound pwiz::msdata::SpectrumIdentityFromMzXML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromXML... Generating docs for compound pwiz::msdata::SpectrumInfo... Generating docs for nested compound pwiz::msdata::SpectrumInfo::PrecursorInfo... Generating docs for compound pwiz::msdata::SpectrumIterator... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Config... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Sieve... Generating docs for compound pwiz::msdata::SpectrumList... Generating docs for compound pwiz::msdata::SpectrumList_BTDX... Generating docs for compound pwiz::msdata::SpectrumList_MGF... Generating docs for compound pwiz::msdata::SpectrumList_MSn... Generating docs for compound pwiz::msdata::SpectrumList_mzML... Generating docs for compound pwiz::msdata::SpectrumList_mzXML... Generating docs for nested compound pwiz::msdata::SpectrumList_mzXML::index_not_found... Generating docs for compound pwiz::msdata::SpectrumListBase... Generating docs for compound pwiz::msdata::SpectrumListCache... Generating docs for nested compound pwiz::msdata::SpectrumListCache::CacheEntry... Generating docs for compound pwiz::msdata::SpectrumListSimple... Generating docs for compound pwiz::msdata::SpectrumListWrapper... Generating docs for compound pwiz::msdata::SpectrumWorkerThreads... Generating docs for compound pwiz::msdata::Target... Generating docs for compound pwiz::msdata::TextWriter... Generating docs for compound pwiz::msdata::TimeIntensityPair... Generating docs for compound pwiz::msdata::Version... Generating docs for namespace pwiz::msdata::detail Generating docs for compound pwiz::msdata::detail::ChromatogramList_ABI... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Agilent... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Bruker... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Shimadzu... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Thermo... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Waters... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI_T2D... Generating docs for compound pwiz::msdata::detail::SpectrumList_Agilent... Generating docs for compound pwiz::msdata::detail::SpectrumList_Bruker... Generating docs for compound pwiz::msdata::detail::SpectrumList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_UIMF... Generating docs for compound pwiz::msdata::detail::SpectrumList_Waters... Generating docs for namespace pwiz::msdata::detail::Bruker Generating docs for namespace pwiz::msdata::detail::Thermo Generating docs for namespace pwiz::msdata::examples Generating docs for namespace pwiz::msdata::id Generating docs for namespace pwiz::msdata::IO Generating docs for namespace pwiz::msdata::MSNumpress Generating docs for namespace pwiz::msdata::References Generating docs for namespace pwiz::peptideid Generating docs for compound pwiz::peptideid::FlatRecordBuilder... Generating docs for compound pwiz::peptideid::location_less... Generating docs for compound pwiz::peptideid::MSInspectRecordBuilder... Generating docs for compound pwiz::peptideid::nativeID_less... Generating docs for compound pwiz::peptideid::PeptideID... Generating docs for nested compound pwiz::peptideid::PeptideID::Iterator... Generating docs for nested compound pwiz::peptideid::PeptideID::IteratorInternal... Generating docs for nested compound pwiz::peptideid::PeptideID::Location... Generating docs for nested compound pwiz::peptideid::PeptideID::Record... Generating docs for compound pwiz::peptideid::PeptideID_flat... Generating docs for compound pwiz::peptideid::PeptideID_pepXml... Generating docs for compound pwiz::peptideid::PeptideIDMap... Generating docs for namespace pwiz::proteome Generating docs for compound pwiz::proteome::DefaultReaderList... Generating docs for/<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found compound pwiz::proteome::DiffConfig... Generating docs for compound pwiz::proteome::DigestedPeptide... Generating docs for compound pwiz::proteome::Digestion... Generating docs for nested compound pwiz::proteome::Digestion::Config... Generating docs for nested compound pwiz::proteome::Digestion::const_iterator... Generating docs for compound pwiz::proteome::Fragmentation... Generating docs for compound pwiz::proteome::IndexList... Generating docs for compound pwiz::proteome::IPIFASTADatabase... Generating docs for nested compound pwiz::proteome::IPIFASTADatabase::Record... Generating docs for compound pwiz::proteome::Modification... Generating docs for compound pwiz::proteome::ModificationList... Generating docs for compound pwiz::proteome::ModificationMap... Generating docs for compound pwiz::proteome::Peptide... Generating docs for compound pwiz::proteome::Protein... Generating docs for compound pwiz::proteome::ProteinList... Generating docs for compound pwiz::proteome::ProteinListCache... Generating docs for compound pwiz::proteome::ProteinListSimple... Generating docs for compound pwiz::proteome::ProteinListWrapper... Generating docs for compound pwiz::proteome::ProteomeData... Generating docs for compound pwiz::proteome::ProteomeDataFile... Generating docs for nested compound pwiz::proteome::ProteomeDataFile::WriteConfig... Generating docs for compound pwiz::proteome::Reader... Generating docs for compound pwiz::proteome::Reader_FASTA... Generating docs for nested compound pwiz::proteome::Reader_FASTA::Config... Generating docs for compound pwiz::proteome::ReaderFail... Generating docs for compound pwiz::proteome::ReaderList... Generating docs for compound pwiz::proteome::Serializer_FASTA... Generating docs for nested compound pwiz::proteome::Serializer_FASTA::Config... Generating docs for compound pwiz::proteome::TextWriter... Generating docs for compound pwiz::proteome::Version... Generating docs for namespace pwiz::proteome::AminoAcid Generating docs for namespace pwiz::proteome::AminoAcid::Info Generating docs for compound pwiz::proteome::AminoAcid::Info::Record... Generating docs for namespace pwiz::proteome::examples Generating docs for namespace pwiz::tradata Generating docs for compound pwiz::tradata::Compound... Generating docs for compound pwiz::tradata::Configuration... Generating docs for compound pwiz::tradata::Contact... Generating docs for compound pwiz::tradata::DefaultReaderList... Generating docs for compound pwiz::tradata::DiffConfig... Generating docs for compound pwiz::tradata::Evidence... Generating docs for compound pwiz::tradata::Instrument... Generating docs for compound pwiz::tradata::Interpretation... Generating docs for compound pwiz::tradata::Modification... Generating docs for compound pwiz::tradata::Peptide... Generating docs for compound pwiz::tradata::Precursor... Generating docs for compound pwiz::tradata::Prediction... Generating docs for compound pwiz::tradata::Product... Generating docs for compound pwiz::tradata::Protein... Generating docs for compound pwiz::tradata::Publication... Generating docs for compound pwiz::tradata::Reader... Generating docs for compound pwiz::tradata::ReaderFail... Generating docs for compound pwiz::tradata::ReaderList... Generating docs for compound pwiz::tradata::RetentionTime... Generating docs for compound pwiz::tradata::Serializer_traML... Generating docs for compound pwiz::tradata::Software... Generating docs for compound pwiz::tradata::Target... Generating docs for compound pwiz::tradata::TargetList... Generating docs for compound pwiz::tradata::TextWriter... Generating docs for compound pwiz::tradata::TraData... Generating docs for compound pwiz::tradata::TraDataFile... Generating docs for nested compound pwiz::tradata::TraDataFile::WriteConfig... Generating docs for compound pwiz::tradata::Transition... Generating docs for compound pwiz::tradata::Validation... Generating docs for compound pwiz::tradata::Version... Generating docs for namespace pwiz::tradata::examples Generating docs for namespace pwiz::tradata::IO Generating docs for namespac/<>/pwiz/utility/findmf/base/base/cumsum.hpp:40: warning: The following parameters of ralab::base::cumsum(TIterator beg, TIterator end, std::vector< T > &res) are not documented: parameter 'end' /<>/pwiz/utility/findmf/base/base/cumsum.hpp:63: warning: The following parameters of ralab::base::cumsum(TIterator beg, TIterator end) are not documented: parameter 'end' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:58: warning: The following parameters of ralab::base::base::interpolate_linear(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:83: warning: The following parameters of ralab::base::base::interpolate_cosine(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:105: warning: The following parameters of ralab::base::base::interpolate_cubic(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:130: warning: The following parameters of ralab::base::base::interpolate_Hermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, double tension=0, double bias=0, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:199: warning: The following parameters of ralab::base::base::utilities::interpolateCubicHermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, TFunctor &functor, int start_index=0) are not documented: parameter 'begY' parameter 'endY' parameter 'begX' parameter 'endX' parameter 'start_index' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:283: warning: The following parameters of ralab::base::base::utilities::interpolateLinearCosine(YInputIterator y_p, YInputIterator endY, XInputIterator x_p, XInputIterator endX, OutputIterator out_p, TFunctor &interpolator, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:149: warning: The following parameters of ralab::base::base::utilities::HermiteInterpolate::HermiteInterpolate(TReal tension, TReal bias, TReal epsilon=std::numeric_limits< TReal >::epsilon()) are not documented: parameter 'epsilon' /<>/pwiz/utility/findmf/base/filter/filter.hpp:49: warning: The following parameters of ralab::base::filter::filter_sequence(TIterator dataBeg, TIterator dataEnd, TFilterIterator filterBeg, size_t fsize, TOutputIterator resBeg, bool circular=false, uint32_t sides=2) are not documented: parameter 'dataEnd' parameter 'fsize' /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp:102: warning: The following parameters of ralab::base::filter::getGaussian1DerFilterQuantile(std::vector< TReal > &gauss1d, TReal fwhm=20, TReal quantile=0.1) are not documented: parameter 'quantile' /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp:39: warning: The following parameters of ralab::base::filter::utilities::prepareData(TIterator dataBeg, TIterator dataEnd, size_t fsize, TContainer &res, bool mirror=false) are not documented: parameter 'dataBeg' parameter 'dataEnd' parameter 'fsize' /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:81: warning: The following parameters of ralab::base::ms::LocalMinPeakArea::LocalMinPeakArea(TReal integwith, TReal threshold=.1) are not documented: parameter 'threshold' /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:177: warning: The following parameters of ralab::base::ms::PeakPicker::PeakPicker(TReal resolution, std::pair< TReal, TReal > &massrange, TReal width=2., TReal intwidth=2., TReal intensitythreshold=10., bool area=true, uint32_t maxnumberofpeaks=0, double c2d=1e-5) are not documented: parameter 'intensitythreshold' /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp:49: warning: The following parameters of ralab::base::ms::SimplePicker::operator()(Tit beg, Tit end, Outit zerocrossings, size_t nzercross, std::ptrdiff_t lag=2) are not documented: parameter 'beg' parameter 'end' parameter 'zerocrossings' parameter 'lag' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:36: warning: Found unknown command `\given' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:83: warning: Found unknown command `\Assignment' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:96: warning: The following parameters of ralab::base::resample::Bucket1D::operator()(InputIterator beg, InputIterator end, std::vector< std::pair< std::size_t, std::size_t > > &bucketPairs) are not documented: parameter 'end' parameter 'bucketPairs' e pwiz::tradata::References Generating docs for namespace pwiz::util Generating docs for compound pwiz::util::CharIndexedVector... Generating docs for compound pwiz::util::CharIndexedVectorConstIterator... Generating docs for compound pwiz::util::CharIndexedVectorIterator... Generating docs for compound pwiz::util::ClickwrapPrompter... Generating docs for compound pwiz::util::DefaultTabHandler... Generating docs for compound pwiz::util::Image... Generating docs for nested compound pwiz::util::Image::Color... Generating docs for nested compound pwiz::util::Image::Point... Generating docs for compound pwiz::util::IntegerSet... Generating docs for nested compound pwiz::util::IntegerSet::Interval... Generating docs for nested compound pwiz::util::IntegerSet::Iterator... Generating docs for compound pwiz::util::IterationListener... Generating docs for nested compound pwiz::util::IterationListener::UpdateMessage... Generating docs for compound pwiz::util::IterationListenerRegistry... Generating docs for compound pwiz::util::mru_list... Generating docs for compound pwiz::util::MSIHandler... Generating docs for nested compound pwiz::util::MSIHandler::Record... Generating docs for compound pwiz::util::once_flag_proxy... Generating docs for compound pwiz::util::random_access_compressed_ifstream... Generating docs for compound pwiz::util::SHA1_ostream... Generating docs for compound pwiz::util::SHA1Calculator... Generating docs for compound pwiz::util::SHA1Filter... Generating docs for compound pwiz::util::SHA1SymmetricFilter... Generating docs for compound pwiz::util::shared_map... Generating docs for compound pwiz::util::TabHandler... Generating docs for compound pwiz::util::TabReader... Generating docs for compound pwiz::util::TestPathPredicate... Generating docs for compound pwiz::util::Timer... Generating docs for compound pwiz::util::usage_exception... Generating docs for compound pwiz::util::user_error... Generating docs for compound pwiz::util::VectorTabHandler... Generating docs for compound pwiz::util::virtual_map... Generating docs for namespace pwiz::util::Base64 Generating docs for namespace pwiz::util::env Generating docs for namespace pwiz::vendor_api Generating docs for namespace pwiz::vendor_api::Bruker Generating docs for namespace ralab Generating docs for namespace ralab::base Generating docs for namespace ralab::base::base Generating docs for namespace ralab::base::base::utilities Generating docs for compound ralab::base::base::utilities::CosineInterpolate... Generating docs for compound ralab::base::base::utilities::CubicInterpolate... Generating docs for compound ralab::base::base::utilities::HermiteInterpolate... Generating docs for compound ralab::base::base::utilities::LinearInterpolate... Generating docs for compound ralab::base::base::utilities::SeqMinus... Generating docs for compound ralab::base::base::utilities::SeqPlus... Generating docs for namespace ralab::base::filter Generating docs for namespace ralab::base::filter::utilities Generating docs for compound ralab::base::filter::utilities::Gauss... Generating docs for compound ralab::base::filter::utilities::Gauss_1deriv... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat2... Generating docs for namespace ralab::base::ms Generating docs for compound ralab::base::ms::LocalMinPeakArea... Generating docs for compound ralab::base::ms::PeakPicker... Generating docs for compound ralab::base::ms::SimplePeakArea... Generating docs for compound ralab::base::ms::SimplePicker... Generating docs for namespace ralab::base::resample Generating docs for compound ralab::base::resample::Bin1D... Generating docs for compound ralab::base::resample::Bucket1D... Generating docs for compound ralab::base::resample::Convert2Dense... Generating docs for compound ralab::base::resample::DaCompFunctor... Generating docs for compound ralab::base::resample::FTMSCompFunctor... Generating docs for compound ralab::base::resample::PPMCompFunctor... Generating docs for compound ralab::/<>/pwiz/utility/findmf/base/base/scale.hpp:77: warning: The following parameters of ralab::base::stats::scale(InputIterator begin, InputIterator end, std::pair< typename std::iterator_traits< InputIterator >::value_type, typename std::iterator_traits< InputIterator >::value_type > &scaled, bool center=true, bool scale=true) are not documented: parameter 'begin' parameter 'end' sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: 1: dvips: not found error: Problems running dvips. Check your installation! /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' base::resample::SamplingWith... Generating docs for compound ralab::base::resample::SquareRoot... Generating docs for namespace ralab::base::resample::utilities Generating docs for compound ralab::base::resample::utilities::meanfunctor... Generating docs for namespace ralab::base::stats Generating docs for compound ralab::base::stats::NthPower... Generating docs for namespace ralab::base::utils Generating docs for namespace ralab::constants Generating graph info page... Generating directory documentation... Generating bitmaps for formulas in HTML... Generating image form_0.png for formula Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 35970/65536 hits=349949 misses=38256 finished... rm -f doc/dox/html/jquery.js touch build-indep-stamp fakeroot debian/rules binary "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: parallel=4 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3/ debian/libpwiz3/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /<>/debian/build cp -rpf autotools libraries pwiz pwiz_tools /<>/debian/build echo "BOOST_LDPATH = /usr/lib/x86_64-linux-gnu" > /<>/debian/build/autotools/Makefile.am-tmp cat /<>/debian/build/autotools/Makefile.am >> /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/eigen3-nnls"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/CSpline"|' /<>/debian/build/autotools/Makefile.am-tmp mv /<>/debian/build/autotools/Makefile.am-tmp /<>/debian/build/autotools/Makefile.am rm -f /<>/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /<>/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for memory.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... 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(cached) yes checking for GNU libc compatible realloc... yes checking for atexit... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for modf... yes checking for pow... no checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for strtoull... yes checking for Boost headers version >= 1.43.0... yes checking for Boost's header version... 1_67 checking for the flags needed to use pthreads... -pthread checking for the toolset name used by Boost for g++... configure: WARNING: could not figure out which toolset name to use for g++ checking boost/system/error_code.hpp usability... yes checking boost/system/error_code.hpp presence... yes checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking boost/thread.hpp usability... yes checking boost/thread.hpp presence... yes checking for boost/thread.hpp... yes checking for the Boost thread library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/filesystem/path.hpp usability... yes checking boost/filesystem/path.hpp presence... yes checking for boost/filesystem/path.hpp... yes checking for the Boost filesystem library... (cached) yes checking boost/regex.hpp usability... yes checking boost/regex.hpp presence... yes checking for boost/regex.hpp... yes checking for the Boost regex library... (cached) yes checking boost/archive/text_oarchive.hpp usability... yes checking boost/archive/text_oarchive.hpp presence... yes checking for boost/archive/text_oarchive.hpp... yes checking for the Boost serialization library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/iostreams/device/file_descriptor.hpp usability... yes checking boost/iostreams/device/file_descriptor.hpp presence... yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking boost/date_time/posix_time/posix_time.hpp usability... yes checking boost/date_time/posix_time/posix_time.hpp presence... yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking boost/program_options.hpp usability... yes checking boost/program_options.hpp presence... yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/chrono.hpp usability... yes checking boost/chrono.hpp presence... yes checking for boost/chrono.hpp... yes checking for the Boost chrono library... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /<>/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/x86_64-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/<>/debian/build /usr/bin/make install make[1]: Entering directory '/<>/debian/build' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/debian/build' make[1]: Entering directory '/<>/debian/build' make[2]: Entering directory '/<>/debian/build' /bin/mkdir -p '/<>/debian/build/usr/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libpwiz.la '/<>/debian/build/usr/lib' libtool: install: /usr/bin/install -c .libs/libpwiz.so.3.0.0 /<>/debian/build/usr/lib/libpwiz.so.3.0.0 libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so.3 || { rm -f libpwiz.so.3 && ln -s libpwiz.so.3.0.0 libpwiz.so.3; }; }) libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so || { rm -f libpwiz.so && ln -s libpwiz.so.3.0.0 libpwiz.so; }; }) libtool: install: /usr/bin/install -c .libs/libpwiz.lai /<>/debian/build/usr/lib/libpwiz.la libtool: install: /usr/bin/install -c .libs/libpwiz.a /<>/debian/build/usr/lib/libpwiz.a libtool: install: chmod 644 /<>/debian/build/usr/lib/libpwiz.a libtool: install: ranlib /<>/debian/build/usr/lib/libpwiz.a libtool: warning: remember to run 'libtool --finish /usr/lib' /bin/mkdir -p '/<>/debian/build/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c msconvert write_mzid_example_files txt2mzml hello_msdata pepcat idconvert hello_analyzer_2 write_example_files write_traml_example_files write_proteome_example_files mscat hello_analyzer '/<>/debian/build/usr/bin' libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/msconvert /<>/debian/build/usr/bin/msconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_mzid_example_files /<>/debian/build/usr/bin/write_mzid_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/txt2mzml /<>/debian/build/usr/bin/txt2mzml libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_msdata /<>/debian/build/usr/bin/hello_msdata libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/pepcat /<>/debian/build/usr/bin/pepcat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/idconvert /<>/debian/build/usr/bin/idconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer_2 /<>/debian/build/usr/bin/hello_analyzer_2 libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_example_files /<>/debian/build/usr/bin/write_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_traml_example_files /<>/debian/build/usr/bin/write_traml_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_proteome_example_files /<>/debian/build/usr/bin/write_proteome_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/mscat /<>/debian/build/usr/bin/mscat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer /<>/debian/build/usr/bin/hello_analyzer make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/<>/debian/build' make[1]: Leaving directory '/<>/debian/build' Removing the RPATH datum from the binaries. sh debian/remove-rpath-from-binaries.sh /<> sh debian/make-included-headers-hierarchy.sh .pc/0001-New-patch-for-the-missing-eigen3-nnls-header-file.patch/libraries/eigen3-nnls/nnls.h doc/dox/mainpage.hpp debian/build/libraries/libsvm-3.0/svm.h debian/build/libraries/boost_aux/boost/nowide/config.hpp debian/build/libraries/boost_aux/boost/nowide/windows.hpp debian/build/libraries/boost_aux/boost/nowide/system.hpp debian/build/libraries/boost_aux/boost/nowide/cstdlib.hpp debian/build/libraries/boost_aux/boost/nowide/convert.hpp debian/build/libraries/boost_aux/boost/nowide/args.hpp debian/build/libraries/boost_aux/boost/nowide/iostream.hpp debian/build/libraries/boost_aux/boost/nowide/cenv.hpp debian/build/libraries/boost_aux/boost/nowide/stackstring.hpp debian/build/libraries/boost_aux/boost/nowide/filebuf.hpp debian/build/libraries/boost_aux/boost/nowide/fstream.hpp debian/build/libraries/boost_aux/boost/nowide/cstdio.hpp debian/build/libraries/boost_aux/boost/enum/base.hpp debian/build/libraries/boost_aux/boost/enum/bitfield.hpp debian/build/libraries/boost_aux/boost/enum/iterator.hpp debian/build/libraries/boost_aux/boost/enum/macros.hpp debian/build/libraries/boost_aux/boost/utility/mutexed_singleton.hpp debian/build/libraries/boost_aux/boost/utility/singleton.hpp debian/build/libraries/boost_aux/boost/utility/thread_specific_singleton.hpp debian/build/libraries/boost_aux/boost/utility/detail/restricted.hpp debian/build/libraries/boost_aux/boost/utility/detail/member_dereference.hpp debian/build/libraries/boost_aux/boost/utility/detail/singleton_manager.hpp debian/build/libraries/boost_aux/boost/enum.hpp debian/build/libraries/boost_aux/boost/foreach_field.hpp debian/build/libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp debian/build/libraries/boost_aux/boost/iostreams/filter/base64.hpp debian/build/libraries/boost_aux/tools/bcp/licence_info.hpp debian/build/libraries/boost_aux/tools/bcp/fileview.hpp debian/build/libraries/boost_aux/tools/bcp/bcp.hpp debian/build/libraries/boost_aux/tools/bcp/bcp_imp.hpp debian/build/libraries/eigen3-nnls/nnls.h debian/build/libraries/CSpline/CSpline.h debian/build/pwiz/analysis/passive/RegionSIC.hpp debian/build/pwiz/analysis/passive/PepXMLCat.hpp debian/build/pwiz/analysis/passive/RegionTIC.hpp debian/build/pwiz/analysis/passive/MSDataCache.hpp debian/build/pwiz/analysis/passive/SpectrumBinaryData.hpp debian/build/pwiz/analysis/passive/SpectrumTable.hpp debian/build/pwiz/analysis/passive/RegionAnalyzer.hpp debian/build/pwiz/analysis/passive/RunSummary.hpp debian/build/pwiz/analysis/passive/MSDataAnalyzer.hpp debian/build/pwiz/analysis/passive/RegionSlice.hpp debian/build/pwiz/analysis/passive/TabularConfig.hpp debian/build/pwiz/analysis/passive/MetadataReporter.hpp debian/build/pwiz/analysis/peptideid/PeptideID.hpp debian/build/pwiz/analysis/peptideid/PeptideID_flat.hpp debian/build/pwiz/analysis/peptideid/PeptideID_pepXML.hpp debian/build/pwiz/analysis/peptideid/PeptideIDMap.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetector.hpp debian/build/pwiz/analysis/peakdetect/PeakFitter.hpp debian/build/pwiz/analysis/peakdetect/MZRTField.hpp debian/build/pwiz/analysis/peakdetect/FeatureModeler.hpp debian/build/pwiz/analysis/peakdetect/PeakFinder.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp debian/build/pwiz/analysis/peakdetect/PeakExtractor.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp debian/build/pwiz/analysis/peakdetect/Noise.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp debian/build/pwiz/analysis/peakdetect/PeakelGrower.hpp debian/build/pwiz/analysis/peakdetect/PeakelPicker.hpp debian/build/pwiz/analysis/demux/DemuxTypes.hpp debian/build/pwiz/analysis/demux/DemuxSolver.hpp debian/build/pwiz/analysis/demux/OverlapDemultiplexer.hpp debian/build/pwiz/analysis/demux/DemuxDebugReader.hpp debian/build/pwiz/analysis/demux/IPrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/EnumConstantNotPresentException.hpp debian/build/pwiz/analysis/demux/MatrixIO.hpp debian/build/pwiz/analysis/demux/MSXDemultiplexer.hpp debian/build/pwiz/analysis/demux/CubicHermiteSpline.hpp debian/build/pwiz/analysis/demux/IInterpolation.hpp debian/build/pwiz/analysis/demux/DemuxHelpers.hpp debian/build/pwiz/analysis/demux/PrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/IDemultiplexer.hpp debian/build/pwiz/analysis/demux/SpectrumPeakExtractor.hpp debian/build/pwiz/analysis/demux/DemuxDebugWriter.hpp debian/build/pwiz/analysis/frequency/PeakDetector.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp debian/build/pwiz/analysis/frequency/ParameterEstimator.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp debian/build/pwiz/analysis/frequency/PeakDetectorNaive.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimator.hpp debian/build/pwiz/analysis/frequency/DerivativeTest.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp debian/build/pwiz/analysis/frequency/ParametrizedFunction.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzian.hpp debian/build/pwiz/analysis/common/PeakDetector.hpp debian/build/pwiz/analysis/common/ZeroSampleFiller.hpp debian/build/pwiz/analysis/common/WhittakerSmoother.hpp debian/build/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp debian/build/pwiz/analysis/common/CwtPeakDetector.hpp debian/build/pwiz/analysis/common/Smoother.hpp debian/build/pwiz/analysis/common/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/common/DataFilter.hpp debian/build/pwiz/analysis/common/LocalMaximumPeakDetector.hpp debian/build/pwiz/analysis/Version.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp debian/build/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp debian/build/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp debian/build/pwiz/analysis/proteome_processing/ProteinListFactory.hpp debian/build/pwiz/utility/proteome/IPIFASTADatabase.hpp debian/build/pwiz/utility/findmf/base/resample/bucket1d.hpp debian/build/pwiz/utility/findmf/base/resample/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/bin1d.hpp debian/build/pwiz/utility/findmf/base/resample/convert2dense.hpp debian/build/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/breakspec.hpp debian/build/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp debian/build/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp debian/build/pwiz/utility/findmf/base/ms/simplepicker.hpp debian/build/pwiz/utility/findmf/base/base/copyif.hpp debian/build/pwiz/utility/findmf/base/base/scale.hpp debian/build/pwiz/utility/findmf/base/base/constants.hpp debian/build/pwiz/utility/findmf/base/base/base.hpp debian/build/pwiz/utility/findmf/base/base/diff.hpp debian/build/pwiz/utility/findmf/base/base/cumsum.hpp debian/build/pwiz/utility/findmf/base/base/utilities/base.hpp debian/build/pwiz/utility/findmf/base/base/utilities/interpolation.hpp debian/build/pwiz/utility/findmf/base/base/interpolate.hpp debian/build/pwiz/utility/findmf/base/filter/filter.hpp debian/build/pwiz/utility/findmf/base/filter/gaussfilter.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/gauss.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp debian/build/pwiz/utility/minimxml/SAXParser.hpp debian/build/pwiz/utility/minimxml/XMLWriter.hpp debian/build/pwiz/utility/misc/mru_list.hpp debian/build/pwiz/utility/misc/IterationListener.hpp debian/build/pwiz/utility/misc/random_access_compressed_ifstream.hpp debian/build/pwiz/utility/misc/endian.hpp debian/build/pwiz/utility/misc/Environment.hpp debian/build/pwiz/utility/misc/Singleton.hpp debian/build/pwiz/utility/misc/virtual_map.hpp debian/build/pwiz/utility/misc/unit.hpp debian/build/pwiz/utility/misc/SHA1_ostream.hpp debian/build/pwiz/utility/misc/Once.hpp debian/build/pwiz/utility/misc/SHA1Calculator.hpp debian/build/pwiz/utility/misc/Stream.hpp debian/build/pwiz/utility/misc/TabReader.hpp debian/build/pwiz/utility/misc/MSIHandler.hpp debian/build/pwiz/utility/misc/Std.hpp debian/build/pwiz/utility/misc/Image.hpp debian/build/pwiz/utility/misc/IntegerSet.hpp debian/build/pwiz/utility/misc/Container.hpp debian/build/pwiz/utility/misc/VendorReaderTestHarness.hpp debian/build/pwiz/utility/misc/Base64.hpp debian/build/pwiz/utility/misc/DateTime.hpp debian/build/pwiz/utility/misc/CharIndexedVector.hpp debian/build/pwiz/utility/misc/shared_map.hpp debian/build/pwiz/utility/misc/SHA1.h debian/build/pwiz/utility/misc/almost_equal.hpp debian/build/pwiz/utility/misc/Filesystem.hpp debian/build/pwiz/utility/misc/String.hpp debian/build/pwiz/utility/misc/optimized_lexical_cast.hpp debian/build/pwiz/utility/misc/Timer.hpp debian/build/pwiz/utility/misc/cpp_cli_utilities.hpp debian/build/pwiz/utility/misc/Exception.hpp debian/build/pwiz/utility/misc/ClickwrapPrompter.hpp debian/build/pwiz/utility/misc/Export.hpp debian/build/pwiz/utility/math/HouseholderQR.hpp debian/build/pwiz/utility/math/Stats.hpp debian/build/pwiz/utility/math/qr.hpp debian/build/pwiz/utility/math/MatrixInverse.hpp debian/build/pwiz/utility/math/Parabola.hpp debian/build/pwiz/utility/math/Types.hpp debian/build/pwiz/utility/math/LinearSolver.hpp debian/build/pwiz/utility/math/OrderedPair.hpp debian/build/pwiz/utility/math/MatchedFilter.hpp debian/build/pwiz/utility/math/round.hpp debian/build/pwiz/utility/math/LinearLeastSquares.hpp debian/build/pwiz/utility/math/erf.hpp debian/build/pwiz/utility/chemistry/IsotopeTable.hpp debian/build/pwiz/utility/chemistry/Ion.hpp debian/build/pwiz/utility/chemistry/IsotopeCalculator.hpp debian/build/pwiz/utility/chemistry/Chemistry.hpp debian/build/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp debian/build/pwiz/utility/chemistry/MZTolerance.hpp debian/build/pwiz/utility/chemistry/ChemistryData.hpp debian/build/pwiz/data/proteome/ProteinListCache.hpp debian/build/pwiz/data/proteome/DefaultReaderList.hpp debian/build/pwiz/data/proteome/Digestion.hpp debian/build/pwiz/data/proteome/TextWriter.hpp debian/build/pwiz/data/proteome/Reader.hpp debian/build/pwiz/data/proteome/ProteomeDataFile.hpp debian/build/pwiz/data/proteome/ProteomeData.hpp debian/build/pwiz/data/proteome/Diff.hpp debian/build/pwiz/data/proteome/Serializer_FASTA.hpp debian/build/pwiz/data/proteome/ProteinListWrapper.hpp debian/build/pwiz/data/proteome/Modification.hpp debian/build/pwiz/data/proteome/AminoAcid.hpp debian/build/pwiz/data/proteome/Version.hpp debian/build/pwiz/data/proteome/examples.hpp debian/build/pwiz/data/proteome/Peptide.hpp debian/build/pwiz/data/proteome/Reader_FASTA.hpp debian/build/pwiz/data/misc/FrequencyDataTestData.hpp debian/build/pwiz/data/misc/PeakData.hpp debian/build/pwiz/data/misc/MinimumPepXML.hpp debian/build/pwiz/data/misc/CalibrationParameters.hpp debian/build/pwiz/data/misc/FrequencyData.hpp debian/build/pwiz/data/misc/SampleDatum.hpp debian/build/pwiz/data/msdata/ChromatogramList_mzML.hpp debian/build/pwiz/data/msdata/ChromatogramListBase.hpp debian/build/pwiz/data/msdata/MSDataFile.hpp debian/build/pwiz/data/msdata/SpectrumListWrapper.hpp debian/build/pwiz/data/msdata/DefaultReaderList.hpp debian/build/pwiz/data/msdata/References.hpp debian/build/pwiz/data/msdata/SHA1OutputObserver.hpp debian/build/pwiz/data/msdata/MSDataMerger.hpp debian/build/pwiz/data/msdata/Serializer_mzML.hpp debian/build/pwiz/data/msdata/MSNumpress.hpp debian/build/pwiz/data/msdata/TextWriter.hpp debian/build/pwiz/data/msdata/Reader.hpp debian/build/pwiz/data/msdata/MemoryMRUCache.hpp debian/build/pwiz/data/msdata/SpectrumList_MGF.hpp debian/build/pwiz/data/msdata/SpectrumWorkerThreads.hpp debian/build/pwiz/data/msdata/LegacyAdapter.hpp debian/build/pwiz/data/msdata/Serializer_MSn.hpp debian/build/pwiz/data/msdata/SpectrumListCache.hpp debian/build/pwiz/data/msdata/Diff.hpp debian/build/pwiz/data/msdata/SpectrumList_mzML.hpp debian/build/pwiz/data/msdata/Serializer_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumList_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumListBase.hpp debian/build/pwiz/data/msdata/SpectrumIterator.hpp debian/build/pwiz/data/msdata/SpectrumList_MSn.hpp debian/build/pwiz/data/msdata/SpectrumList_BTDX.hpp debian/build/pwiz/data/msdata/MSData.hpp debian/build/pwiz/data/msdata/Serializer_MGF.hpp debian/build/pwiz/data/msdata/Version.hpp debian/build/pwiz/data/msdata/SpectrumInfo.hpp debian/build/pwiz/data/msdata/IO.hpp debian/build/pwiz/data/msdata/examples.hpp debian/build/pwiz/data/msdata/Index_mzML.hpp debian/build/pwiz/data/msdata/BinaryDataEncoder.hpp debian/build/pwiz/data/common/Index.hpp debian/build/pwiz/data/common/Unimod.hpp debian/build/pwiz/data/common/diff_std.hpp debian/build/pwiz/data/common/BinaryIndexStream.hpp debian/build/pwiz/data/common/CVTranslator.hpp debian/build/pwiz/data/common/MemoryIndex.hpp debian/build/pwiz/data/common/obo.hpp debian/build/pwiz/data/common/cv.hpp debian/build/pwiz/data/common/ParamTypes.hpp debian/build/pwiz/data/identdata/DefaultReaderList.hpp debian/build/pwiz/data/identdata/References.hpp debian/build/pwiz/data/identdata/MzidPredicates.hpp debian/build/pwiz/data/identdata/Serializer_protXML.hpp debian/build/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz/data/identdata/Reader.hpp debian/build/pwiz/data/identdata/Pep2MzIdent.hpp debian/build/pwiz/data/identdata/Serializer_Text.hpp debian/build/pwiz/data/identdata/Diff.hpp debian/build/pwiz/data/identdata/IdentData.hpp debian/build/pwiz/data/identdata/MascotReader.hpp debian/build/pwiz/data/identdata/Serializer_pepXML.hpp debian/build/pwiz/data/identdata/KwCVMap.hpp debian/build/pwiz/data/identdata/DelimWriter.hpp debian/build/pwiz/data/identdata/Serializer_mzid.hpp debian/build/pwiz/data/identdata/IdentDataFile.hpp debian/build/pwiz/data/identdata/Version.hpp debian/build/pwiz/data/identdata/IO.hpp debian/build/pwiz/data/identdata/examples.hpp debian/build/pwiz/data/identdata/DelimReader.hpp debian/build/pwiz/data/vendor_readers/ExtendedReaderList.hpp debian/build/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp debian/build/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp debian/build/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp debian/build/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp debian/build/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp debian/build/pwiz/data/tradata/DefaultReaderList.hpp debian/build/pwiz/data/tradata/References.hpp debian/build/pwiz/data/tradata/TextWriter.hpp debian/build/pwiz/data/tradata/Reader.hpp debian/build/pwiz/data/tradata/Diff.hpp debian/build/pwiz/data/tradata/TraData.hpp debian/build/pwiz/data/tradata/TraDataFile.hpp debian/build/pwiz/data/tradata/Serializer_traML.hpp debian/build/pwiz/data/tradata/Version.hpp debian/build/pwiz/data/tradata/IO.hpp debian/build/pwiz/data/tradata/examples.hpp debian/build/pwiz/Version.hpp debian/build/pwiz_tools/common/MSDataAnalyzerApplication.hpp debian/build/pwiz_tools/common/FullReaderList.hpp docbook-to-man debian/msconvert.sgml > debian/msconvert.1 docbook-to-man debian/idconvert.sgml > debian/idconvert.1 docbook-to-man debian/mscat.sgml > debian/mscat.1 docbook-to-man debian/txt2mzml.sgml > debian/txt2mzml.1 touch build-arch-stamp dh_testdir -a dh_testroot -a dh_link install -d debian/libpwiz-dev/usr/lib rm -f debian/libpwiz-dev/usr/lib/libpwiz.so ln -s libpwiz.so.3.0.0 debian/libpwiz-dev/usr/lib/libpwiz.so install -d debian/libpwiz3/usr/lib rm -f debian/libpwiz3/usr/lib/libpwiz.so.3 ln -s libpwiz.so.3.0.0 debian/libpwiz3/usr/lib/libpwiz.so.3 dh_installchangelogs -a install -d debian/libpwiz3/usr/share/doc/libpwiz3 install -p -m0644 debian/changelog debian/libpwiz3/usr/share/doc/libpwiz3/changelog.Debian install -d debian/libpwiz-tools/usr/share/doc/libpwiz-tools install -p -m0644 debian/changelog debian/libpwiz-tools/usr/share/doc/libpwiz-tools/changelog.Debian install -d debian/libpwiz-dev/usr/share/doc/libpwiz-dev install -p -m0644 debian/changelog debian/libpwiz-dev/usr/share/doc/libpwiz-dev/changelog.Debian dh_installdocs -a install -d debian/.debhelper/generated/libpwiz-dev install -p -m0644 debian/README.Debian debian/libpwiz-dev/usr/share/doc/libpwiz-dev/README.Debian install -p -m0644 debian/copyright debian/libpwiz-dev/usr/share/doc/libpwiz-dev/copyright install -d debian/.debhelper/generated/libpwiz3 install -p -m0644 debian/copyright debian/libpwiz3/usr/share/doc/libpwiz3/copyright install -d debian/.debhelper/generated/libpwiz-tools install -p -m0644 debian/copyright debian/libpwiz-tools/usr/share/doc/libpwiz-tools/copyright install -d debian/.debhelper/generated/libpwiz-doc dh_install -a install -d debian/libpwiz-dev/usr/include/ cp --reflink=auto -a ./debian/includes/pwiz debian/libpwiz-dev/usr/include// cp --reflink=auto -a ./debian/build/usr/lib/libpwiz.a debian/libpwiz-dev/usr/lib/ cp --reflink=auto -a ./debian/build/usr/lib/libpwiz.so.3.0.0 debian/libpwiz3/usr/lib/ install -d debian/libpwiz3/usr/share/doc/libpwiz3/example-files cp --reflink=auto -a ./pwiz_tools/examples/hello_analyzer.cpp ./pwiz_tools/examples/hello_analyzer_2.cpp ./pwiz_tools/examples/hello_msdata.cpp ./pwiz_tools/examples/mscat.cpp ./pwiz_tools/examples/txt2mzml.cpp ./pwiz_tools/examples/write_example_files.cpp ./pwiz_tools/examples/write_mzid_example_files.cpp ./pwiz_tools/examples/write_proteome_example_files.cpp ./pwiz_tools/examples/write_traml_example_files.cpp debian/libpwiz3/usr/share/doc/libpwiz3/example-files/ install -d debian/libpwiz-tools/usr/bin cp --reflink=auto -a ./debian/build/usr/bin/idconvert ./debian/build/usr/bin/mscat ./debian/build/usr/bin/msconvert ./debian/build/usr/bin/txt2mzml debian/libpwiz-tools/usr/bin/ dh_installmenu -a dh_installman -a install -d debian/libpwiz-tools/usr/share/man/man1/ install -p -m0644 ./debian/msconvert.1 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 install -p -m0644 ./debian/idconvert.1 debian/libpwiz-tools/usr/share/man/man1/idconvert.1 install -p -m0644 ./debian/mscat.1 debian/libpwiz-tools/usr/share/man/man1/mscat.1 install -p -m0644 ./debian/txt2mzml.1 debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 install -d debian/libpwiz3/usr/share/man/man3/ install -p -m0644 ./debian/libpwiz.3 debian/libpwiz3/usr/share/man/man3/libpwiz.3 man -l --recode UTF-8 ./debian/libpwiz3/usr/share/man/man3/libpwiz.3 > debian/libpwiz3/usr/share/man/man3/libpwiz.3.dh-new man -l --recode UTF-8 ./debian/libpwiz-tools/usr/share/man/man1/idconvert.1 > debian/libpwiz-tools/usr/share/man/man1/idconvert.1.dh-new man -l --recode UTF-8 ./debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 > debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1.dh-new mv debian/libpwiz-tools/usr/share/man/man1/idconvert.1.dh-new debian/libpwiz-tools/usr/share/man/man1/idconvert.1 man -l --recode UTF-8 ./debian/libpwiz-tools/usr/share/man/man1/mscat.1 > debian/libpwiz-tools/usr/share/man/man1/mscat.1.dh-new mv debian/libpwiz3/usr/share/man/man3/libpwiz.3.dh-new debian/libpwiz3/usr/share/man/man3/libpwiz.3 man -l --recode UTF-8 ./debian/libpwiz-tools/usr/share/man/man1/msconvert.1 > debian/libpwiz-tools/usr/share/man/man1/msconvert.1.dh-new mv debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1.dh-new debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 mv debian/libpwiz-tools/usr/share/man/man1/mscat.1.dh-new debian/libpwiz-tools/usr/share/man/man1/mscat.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/idconvert.1 debian/libpwiz-tools/usr/share/man/man1/mscat.1 mv debian/libpwiz-tools/usr/share/man/man1/msconvert.1.dh-new debian/libpwiz-tools/usr/share/man/man1/msconvert.1 chmod 0644 -- debian/libpwiz3/usr/share/man/man3/libpwiz.3 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 dh_strip -a install -d debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/92/073ce215f0d2e5d87ae6d38e04b9a379029a94.debug install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/idconvert debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/bf/33ffa8baa2b3b0ba6f06a05afe56d6c64d3832.debug strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libpwiz-dev/usr/lib/libpwiz.a chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/bf/33ffa8baa2b3b0ba6f06a05afe56d6c64d3832.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/bf/33ffa8baa2b3b0ba6f06a05afe56d6c64d3832.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz-tools/usr/bin/idconvert objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/bf/33ffa8baa2b3b0ba6f06a05afe56d6c64d3832.debug debian/libpwiz-tools/usr/bin/idconvert install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/txt2mzml debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/8d/cc81bd4e718561b94052fe21474139a792dda2.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/8d/cc81bd4e718561b94052fe21474139a792dda2.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/8d/cc81bd4e718561b94052fe21474139a792dda2.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz-tools/usr/bin/txt2mzml objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/8d/cc81bd4e718561b94052fe21474139a792dda2.debug debian/libpwiz-tools/usr/bin/txt2mzml install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/06 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/mscat debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/06/5df9764fa4b88f617bccdd872484ccdf5e01b5.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/06/5df9764fa4b88f617bccdd872484ccdf5e01b5.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/06/5df9764fa4b88f617bccdd872484ccdf5e01b5.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz-tools/usr/bin/mscat objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/06/5df9764fa4b88f617bccdd872484ccdf5e01b5.debug debian/libpwiz-tools/usr/bin/mscat install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/93 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/msconvert debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/93/9b07041fd2b6041353141fe21bb2470ba1d83f.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/93/9b07041fd2b6041353141fe21bb2470ba1d83f.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/93/9b07041fd2b6041353141fe21bb2470ba1d83f.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz-tools/usr/bin/msconvert objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/93/9b07041fd2b6041353141fe21bb2470ba1d83f.debug debian/libpwiz-tools/usr/bin/msconvert install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/share/doc ln -s libpwiz-tools debian/.debhelper/libpwiz-tools/dbgsym-root/usr/share/doc/libpwiz-tools-dbgsym chmod 0644 -- debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/92/073ce215f0d2e5d87ae6d38e04b9a379029a94.debug chown 0:0 -- debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/92/073ce215f0d2e5d87ae6d38e04b9a379029a94.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/92/073ce215f0d2e5d87ae6d38e04b9a379029a94.debug debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 install -d debian/.debhelper/libpwiz3/dbgsym-root/usr/share/doc ln -s libpwiz3 debian/.debhelper/libpwiz3/dbgsym-root/usr/share/doc/libpwiz3-dbgsym dh_compress -av -Xexample-files cd debian/libpwiz3 cd debian/libpwiz-tools cd debian/libpwiz-dev chmod a-x usr/share/doc/libpwiz-dev/changelog.Debian gzip -9nf usr/share/doc/libpwiz-dev/changelog.Debian chmod a-x usr/share/doc/libpwiz3/changelog.Debian usr/share/man/man3/libpwiz.3 chmod a-x usr/share/doc/libpwiz-tools/changelog.Debian usr/share/man/man1/idconvert.1 usr/share/man/man1/mscat.1 usr/share/man/man1/msconvert.1 usr/share/man/man1/txt2mzml.1 cd '/<>' gzip -9nf usr/share/doc/libpwiz3/changelog.Debian usr/share/man/man3/libpwiz.3 cd '/<>' gzip -9nf usr/share/doc/libpwiz-tools/changelog.Debian usr/share/man/man1/idconvert.1 usr/share/man/man1/mscat.1 usr/share/man/man1/msconvert.1 usr/share/man/man1/txt2mzml.1 cd '/<>' dh_makeshlibs -a rm -f debian/libpwiz-dev/DEBIAN/shlibs rm -f debian/libpwiz3/DEBIAN/shlibs install -d debian/libpwiz3/DEBIAN echo "libpwiz 3 libpwiz3" >> debian/libpwiz3/DEBIAN/shlibs chmod 0644 -- debian/libpwiz3/DEBIAN/shlibs chown 0:0 -- debian/libpwiz3/DEBIAN/shlibs mv debian/.debhelper/generated/libpwiz3/triggers.new debian/.debhelper/generated/libpwiz3/triggers rm -f debian/libpwiz-tools/DEBIAN/shlibs dh_installdeb -a install -d debian/libpwiz-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libpwiz3/triggers debian/libpwiz3/DEBIAN/triggers install -d debian/libpwiz-tools/DEBIAN dpkg-gensymbols -P/<>/debian -plibpwiz3 \ -v3.0.0 -c2 -d \ -e/<>/debian/build/usr/lib/libpwiz.so.3.0.0 \ -O/<>/debian/libpwiz3/DEBIAN/symbols dpkg-gensymbols: debug: Scanning /<>/debian/build/usr/lib/libpwiz.so.3.0.0 for symbol information dpkg-gensymbols: warning: new libraries appeared in the symbols file: libpwiz.so.3 dpkg-gensymbols: warning: no debian/symbols file used as basis for generating /<>/debian/libpwiz3/DEBIAN/symbols dpkg-gensymbols: debug: Merging symbols from /<>/debian/build/usr/lib/libpwiz.so.3.0.0 as libpwiz.so.3 dpkg-gensymbols: debug: Storing symbols in /<>/debian/libpwiz3/DEBIAN/symbols. --- new_symbol_file (libpwiz3_3.0.0_amd64) +++ dpkg-gensymbolsAshw6o 2018-07-17 18:27:09.049319197 +0000 @@ -0,0 +1,12566 @@ +libpwiz.so.3 libpwiz3 #MINVER# + PERSON_DOC_OWNER@Base 3.0.0 + _Z10getKLscore12isotopeChainRKSt6vectorIdSaIdEES4_@Base 3.0.0 + _Z11pIonCompare9parentIond@Base 3.0.0 + _Z11pairCompare8pairDatad@Base 3.0.0 + _Z12pairSortFunc8pairDataS_@Base 3.0.0 + _Z12setLogStreamRSo@Base 3.0.0 + _Z12sortFinalCol9ridgeLineS_@Base 3.0.0 + _Z13pGroupCompare14precursorGroupd@Base 3.0.0 + _Z14convertColToMZRKSt6vectorIdSaIdEEi@Base 3.0.0 + _Z14getColLowBoundRKSt6vectorIdSaIdEEd@Base 3.0.0 + _Z14sortScoresByMZ10scoreChainS_@Base 3.0.0 + _Z15getColHighBoundRKSt6vectorIdSaIdEEd@Base 3.0.0 + _Z15rtimeComparatord8rtimeMap@Base 3.0.0 + _Z16etdPredictChargedRKSt3setIN4pwiz2cv4CVIDESt4lessIS2_ESaIS2_EERKSt6vectorINS0_6msdata15MZIntensityPairESaISB_EERS9_IiSaIiEEd@Base 3.0.0 + _Z17scoreAtPercentiledRKSt6vectorIdSaIdEEi@Base 3.0.0 + _Z19sortByRetentionTime8rtimeMapS_@Base 3.0.0 + _Z19sortScoresByKLScore10scoreChainS_@Base 3.0.0 + _Z22sortScoresBySumOfRanks10scoreChainS_@Base 3.0.0 + _Z24sortScoresByIntensitySum10scoreChainS_@Base 3.0.0 + 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_ZTSN4pwiz7tradata11TraDataFileE@Base 3.0.0 + _ZTSN4pwiz7tradata17DefaultReaderListE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO13HandlerTargetE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO14HandlerCVParamE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO14HandlerPeptideE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO14HandlerProteinE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO14HandlerTraDataE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO15HandlerCompoundE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO15HandlerSoftwareE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO16HandlerUserParamE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO17HandlerInstrumentE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO17HandlerPredictionE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO17HandlerTargetListE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO17HandlerTransitionE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO19HandlerModificationE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO20HandlerConfigurationE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO21HandlerParamContainerE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO26HandlerNamedParamContainerE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO9HandlerCVE@Base 3.0.0 + _ZTSN4pwiz7tradata6ReaderE@Base 3.0.0 + _ZTSN4pwiz7tradata7ContactE@Base 3.0.0 + _ZTSN4pwiz7tradata7PeptideE@Base 3.0.0 + _ZTSN4pwiz7tradata7ProteinE@Base 3.0.0 + _ZTSN4pwiz7tradata7TraDataE@Base 3.0.0 + _ZTSN4pwiz7tradata8CompoundE@Base 3.0.0 + _ZTSN4pwiz7tradata8SoftwareE@Base 3.0.0 + _ZTSN4pwiz8analysis10NNLSSolverE@Base 3.0.0 + _ZTSN4pwiz8analysis10PeakFinderE@Base 3.0.0 + _ZTSN4pwiz8analysis10PeakFitterE@Base 3.0.0 + _ZTSN4pwiz8analysis10RunSummaryE@Base 3.0.0 + _ZTSN4pwiz8analysis11DemuxSolverE@Base 3.0.0 + _ZTSN4pwiz8analysis11MSDataCacheE@Base 3.0.0 + _ZTSN4pwiz8analysis11RegionSliceE@Base 3.0.0 + _ZTSN4pwiz8analysis12PeakDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis12PeakelGrowerE@Base 3.0.0 + _ZTSN4pwiz8analysis12PeakelPickerE@Base 3.0.0 + _ZTSN4pwiz8analysis13MS2DeisotoperE@Base 3.0.0 + _ZTSN4pwiz8analysis13SpectrumTableE@Base 3.0.0 + _ZTSN4pwiz8analysis14FeatureModelerE@Base 3.0.0 + _ZTSN4pwiz8analysis14IDemultiplexerE@Base 3.0.0 + _ZTSN4pwiz8analysis14MS2NoiseFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis14MSDataAnalyzerE@Base 3.0.0 + _ZTSN4pwiz8analysis14PeakFinder_SNRE@Base 3.0.0 + _ZTSN4pwiz8analysis14RegionAnalyzerE@Base 3.0.0 + _ZTSN4pwiz8analysis15CwtPeakDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis15FeatureDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis15NoiseCalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis15SpectrumList_3DE@Base 3.0.0 + _ZTSN4pwiz8analysis15ThresholdFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis16AdjustByScanTimeE@Base 3.0.0 + _ZTSN4pwiz8analysis16AdjustmentObjectE@Base 3.0.0 + _ZTSN4pwiz8analysis16MSXDemultiplexerE@Base 3.0.0 + _ZTSN4pwiz8analysis16MetadataReporterE@Base 3.0.0 + _ZTSN4pwiz8analysis17WhittakerSmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis18AdjustSimpleGlobalE@Base 3.0.0 + _ZTSN4pwiz8analysis18CubicHermiteSplineE@Base 3.0.0 + _ZTSN4pwiz8analysis18PeakFamilyDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis18PeakelPicker_BasicE@Base 3.0.0 + _ZTSN4pwiz8analysis18PepxmlRecordReaderE@Base 3.0.0 + _ZTSN4pwiz8analysis18PrecursorMaskCodecE@Base 3.0.0 + _ZTSN4pwiz8analysis18ProteinList_Filter9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis18ProteinList_FilterE@Base 3.0.0 + _ZTSN4pwiz8analysis18SpectrumBinaryDataE@Base 3.0.0 + _ZTSN4pwiz8analysis18SpectrumDataFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis18SpectrumList_DemuxE@Base 3.0.0 + _ZTSN4pwiz8analysis19IPrecursorMaskCodecE@Base 3.0.0 + _ZTSN4pwiz8analysis19PeakFitter_ParabolaE@Base 3.0.0 + _ZTSN4pwiz8analysis19PrecursorMassFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis19SpectrumList_Filter9Predicate10FilterModeE@Base 3.0.0 + _ZTSN4pwiz8analysis19SpectrumList_Filter9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis19SpectrumList_FilterE@Base 3.0.0 + _ZTSN4pwiz8analysis19SpectrumList_Sorter9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis19SpectrumList_SorterE@Base 3.0.0 + _ZTSN4pwiz8analysis20AdjustByMassToChargeE@Base 3.0.0 + _ZTSN4pwiz8analysis20OverlapDemultiplexerE@Base 3.0.0 + _ZTSN4pwiz8analysis20PeakFamilyDetectorFT15NoDataExceptionE@Base 3.0.0 + _ZTSN4pwiz8analysis20PeakFamilyDetectorFTE@Base 3.0.0 + _ZTSN4pwiz8analysis21FeatureDetectorPeakelE@Base 3.0.0 + _ZTSN4pwiz8analysis21FeatureDetectorSimpleE@Base 3.0.0 + _ZTSN4pwiz8analysis21NoiseCalculator_2PassE@Base 3.0.0 + _ZTSN4pwiz8analysis21PrecursorRecalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis21SavitzkyGolaySmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis21SpectrumList_MZWindowE@Base 3.0.0 + _ZTSN4pwiz8analysis21SpectrumList_SmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis22BinnedAdjustmentObjectE@Base 3.0.0 + _ZTSN4pwiz8analysis22PeakelGrower_ProximityE@Base 3.0.0 + _ZTSN4pwiz8analysis22SpectrumList_MZRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis23FeatureModeler_GaussianE@Base 3.0.0 + _ZTSN4pwiz8analysis23MSDataAnalyzerContainerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_PeakFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_PeakPickerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_ScanSummerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_TitleMakerE@Base 3.0.0 + _ZTSN4pwiz8analysis24LocalMaximumPeakDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis24SpectrumList_IonMobilityE@Base 3.0.0 + _ZTSN4pwiz8analysis26ProteinList_DecoyGenerator9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis26ProteinList_DecoyGeneratorE@Base 3.0.0 + _ZTSN4pwiz8analysis26SpectrumList_MetadataFixerE@Base 3.0.0 + _ZTSN4pwiz8analysis28NoVendorPeakPickingExceptionE@Base 3.0.0 + _ZTSN4pwiz8analysis28PrecursorRecalculatorDefaultE@Base 3.0.0 + _ZTSN4pwiz8analysis28SpectrumList_LockmassRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis28SpectrumList_PrecursorRefineE@Base 3.0.0 + _ZTSN4pwiz8analysis30SpectrumList_ChargeFromIsotopeE@Base 3.0.0 + _ZTSN4pwiz8analysis30SpectrumList_ZeroSamplesFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis33ProteinList_FilterPredicate_IdSetE@Base 3.0.0 + _ZTSN4pwiz8analysis34SpectrumList_ChargeStateCalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis34SpectrumList_PrecursorRecalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis36ProteinList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis37SpectrumList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis37SpectrumList_FilterPredicate_PolarityE@Base 3.0.0 + _ZTSN4pwiz8analysis38SpectrumList_FilterPredicate_MzPresentE@Base 3.0.0 + _ZTSN4pwiz8analysis39SpectrumList_FilterPredicate_MSLevelSetE@Base 3.0.0 + _ZTSN4pwiz8analysis41SpectrumList_FilterPredicate_AnalyzerTypeE@Base 3.0.0 + _ZTSN4pwiz8analysis41SpectrumList_FilterPredicate_ScanEventSetE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_FilterPredicate_ScanNumberSetE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_FilterPredicate_ScanTimeRangeE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_SorterPredicate_ScanStartTimeE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_ActivationTypeE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_ChargeStateSetE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_PrecursorMzSetE@Base 3.0.0 + _ZTSN4pwiz8analysis44ProteinList_DecoyGeneratorPredicate_ReversedE@Base 3.0.0 + _ZTSN4pwiz8analysis44ProteinList_DecoyGeneratorPredicate_ShuffledE@Base 3.0.0 + _ZTSN4pwiz8analysis45SpectrumList_FilterPredicate_ThermoScanFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis50SpectrumList_FilterPredicate_DefaultArrayLengthSetE@Base 3.0.0 + _ZTSN4pwiz8analysis8SmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis9RegionSICE@Base 3.0.0 + _ZTSN4pwiz8analysis9RegionTICE@Base 3.0.0 + _ZTSN4pwiz8minimxml17basic_charcounterIcEE@Base 3.0.0 + _ZTSN4pwiz8minimxml9SAXParser7HandlerE@Base 3.0.0 + _ZTSN4pwiz8minimxml9SAXParser9saxstringE@Base 3.0.0 + _ZTSN4pwiz8minimxml9XMLWriter14OutputObserverE@Base 3.0.0 + _ZTSN4pwiz8minimxml9XMLWriterE@Base 3.0.0 + _ZTSN4pwiz8proteome10ReaderFailE@Base 3.0.0 + _ZTSN4pwiz8proteome10ReaderListE@Base 3.0.0 + _ZTSN4pwiz8proteome11ProteinListE@Base 3.0.0 + _ZTSN4pwiz8proteome12ProteomeDataE@Base 3.0.0 + _ZTSN4pwiz8proteome12Reader_FASTAE@Base 3.0.0 + _ZTSN4pwiz8proteome15DigestedPeptideE@Base 3.0.0 + _ZTSN4pwiz8proteome15ModificationMapE@Base 3.0.0 + 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_ZTSN4pwiz9identdata15PeptideEvidenceE@Base 3.0.0 + _ZTSN4pwiz9identdata16AnalysisSoftwareE@Base 3.0.0 + _ZTSN4pwiz9identdata16ProteinDetectionE@Base 3.0.0 + _ZTSN4pwiz9identdata16StringMatchCVMapE@Base 3.0.0 + _ZTSN4pwiz9identdata16TranslationTableE@Base 3.0.0 + _ZTSN4pwiz9identdata17DefaultReaderListE@Base 3.0.0 + _ZTSN4pwiz9identdata20ProteinDetectionListE@Base 3.0.0 + _ZTSN4pwiz9identdata21ProteinAmbiguityGroupE@Base 3.0.0 + _ZTSN4pwiz9identdata22BibliographicReferenceE@Base 3.0.0 + _ZTSN4pwiz9identdata22SpectrumIdentificationE@Base 3.0.0 + _ZTSN4pwiz9identdata24ProteinDetectionProtocolE@Base 3.0.0 + _ZTSN4pwiz9identdata26IdentifiableParamContainerE@Base 3.0.0 + _ZTSN4pwiz9identdata26ProteinDetectionHypothesisE@Base 3.0.0 + _ZTSN4pwiz9identdata26SpectrumIdentificationItemE@Base 3.0.0 + _ZTSN4pwiz9identdata26SpectrumIdentificationListE@Base 3.0.0 + _ZTSN4pwiz9identdata28SpectrumIdentificationResultE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO13HandlerEnzymeE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO13HandlerFilterE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO13HandlerInputsE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO13HandlerPersonE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO13HandlerSampleE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO13HandlerStringE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO14HandlerCVParamE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO14HandlerContactE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO14HandlerEnzymesE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO14HandlerIonTypeE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO14HandlerMeasureE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO14HandlerPeptideE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO14HandlerResidueE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO15HandlerProviderE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO16HandlerIdentDataE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO16HandlerMassTableE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO16HandlerThresholdE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO16HandlerUserParamE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO17HandlerDBSequenceE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO17HandlerSourceFileE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO18HandlerContactRoleE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO18HandlerSpectraDataE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO19HandlerAnalysisDataE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO19HandlerIdentifiableE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO19HandlerModificationE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO19HandlerNamedCVParamE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO19HandlerOrganizationE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO20HandlerContactVectorE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO20HandlerFragmentArrayE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO21HandlerDataCollectionE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO21HandlerParamContainerE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO21HandlerSearchDatabaseE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO22HandlerPeptideEvidenceE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO23HandlerAmbiguousResidueE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO23HandlerAnalysisSoftwareE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO23HandlerProteinDetectionE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO23HandlerTranslationTableE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO24HandlerPeptideHypothesisE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO25HandlerAnalysisCollectionE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO25HandlerSearchModificationE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO25HandlerSequenceCollectionE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO26HandlerDatabaseTranslationE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO26HandlerNamedParamContainerE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO27HandlerProteinDetectionListE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO28HandlerProteinAmbiguityGroupE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO29HandlerBibliographicReferenceE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO29HandlerSpectrumIdentificationE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO31HandlerAnalysisSampleCollectionE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO31HandlerProteinDetectionProtocolE@Base 3.0.0 + _ZTSN4pwiz9identdata2IO31HandlerSubstitutionModificationE@Base 3.0.0 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svm_destroy_param@Base 3.0.0 + svm_free_and_destroy_model@Base 3.0.0 + svm_free_model_content@Base 3.0.0 + svm_get_labels@Base 3.0.0 + svm_get_nr_class@Base 3.0.0 + svm_get_svm_type@Base 3.0.0 + svm_get_svr_probability@Base 3.0.0 + svm_load_model@Base 3.0.0 + svm_predict@Base 3.0.0 + svm_predict_probability@Base 3.0.0 + svm_predict_values@Base 3.0.0 + svm_save_model@Base 3.0.0 + svm_set_print_string_function@Base 3.0.0 + svm_train@Base 3.0.0 + testDataSize_@Base 3.0.0 + testData_@Base 3.0.0 echo "libpwiz 3 libpwiz3 (>= 3.0.9393-1)" > \ /<>/debian/libpwiz3/DEBIAN/shlibs dh_fixperms -a find debian/libpwiz-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz3 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-tools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-tools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libpwiz3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libpwiz-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_lintian -a install -d debian/libpwiz-dev/usr/share/lintian/overrides install -p -m0644 debian/libpwiz-dev.lintian-overrides debian/libpwiz-dev/usr/share/lintian/overrides/libpwiz-dev install -d debian/libpwiz3/usr/share/lintian/overrides install -p -m0644 debian/libpwiz3.lintian-overrides debian/libpwiz3/usr/share/lintian/overrides/libpwiz3 install -d debian/libpwiz-tools/usr/share/lintian/overrides install -p -m0644 debian/libpwiz-tools.lintian-overrides debian/libpwiz-tools/usr/share/lintian/overrides/libpwiz-tools dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libpwiz3.substvars debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 dpkg-shlibdeps -Tdebian/libpwiz-tools.substvars debian/libpwiz-tools/usr/bin/idconvert debian/libpwiz-tools/usr/bin/txt2mzml debian/libpwiz-tools/usr/bin/mscat debian/libpwiz-tools/usr/bin/msconvert dpkg-shlibdeps: warning: symbol inflateReset used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_mutexattr_destroy used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol crc32 used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_mutexattr_init used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_condattr_setclock used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol compress used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateCopy used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol uncompress used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dh_gencontrol -a echo misc:Depends= >> debian/libpwiz-dev.substvars echo misc:Pre-Depends= >> debian/libpwiz-dev.substvars dpkg-gencontrol -plibpwiz-dev -ldebian/changelog -Tdebian/libpwiz-dev.substvars -Pdebian/libpwiz-dev -UMulti-Arch echo misc:Depends= >> debian/libpwiz3.substvars echo misc:Pre-Depends= >> debian/libpwiz3.substvars install -d debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN dpkg-gencontrol -plibpwiz3 -ldebian/changelog -Tdebian/libpwiz3.substvars -Pdebian/.debhelper/libpwiz3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=libpwiz3-dbgsym "-DDepends=libpwiz3 (= \${binary:Version})" "-DDescription=debug symbols for libpwiz3" -DBuild-Ids=92073ce215f0d2e5d87ae6d38e04b9a379029a94 -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/libpwiz-tools.substvars echo misc:Pre-Depends= >> debian/libpwiz-tools.substvars install -d debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN dpkg-gencontrol -plibpwiz-tools -ldebian/changelog -Tdebian/libpwiz-tools.substvars -Pdebian/.debhelper/libpwiz-tools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=libpwiz-tools-dbgsym "-DDepends=libpwiz-tools (= \${binary:Version})" "-DDescription=debug symbols for libpwiz-tools" "-DBuild-Ids=065df9764fa4b88f617bccdd872484ccdf5e01b5 8dcc81bd4e718561b94052fe21474139a792dda2 939b07041fd2b6041353141fe21bb2470ba1d83f bf33ffa8baa2b3b0ba6f06a05afe56d6c64d3832" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libpwiz-dev: unknown substitution variable ${shlibs:Depends} chmod 0644 -- debian/libpwiz-dev/DEBIAN/control chown 0:0 -- debian/libpwiz-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibpwiz3 -ldebian/changelog -Tdebian/libpwiz3.substvars -Pdebian/libpwiz3 -UMulti-Arch chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibpwiz-tools -ldebian/changelog -Tdebian/libpwiz-tools.substvars -Pdebian/libpwiz-tools -UMulti-Arch chmod 0644 -- debian/libpwiz3/DEBIAN/control chown 0:0 -- debian/libpwiz3/DEBIAN/control chmod 0644 -- debian/libpwiz-tools/DEBIAN/control chown 0:0 -- debian/libpwiz-tools/DEBIAN/control dh_md5sums -a (cd debian/libpwiz-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libpwiz3 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libpwiz-tools >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libpwiz-tools/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-tools/DEBIAN/md5sums (cd debian/.debhelper/libpwiz-tools/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libpwiz3/DEBIAN/md5sums chown 0:0 -- debian/libpwiz3/DEBIAN/md5sums (cd debian/.debhelper/libpwiz3/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libpwiz-dev/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/libpwiz-dev .. install -d debian/.debhelper/scratch-space/build-libpwiz-tools dpkg-deb --build debian/.debhelper/libpwiz-tools/dbgsym-root debian/.debhelper/scratch-space/build-libpwiz-tools install -d debian/.debhelper/scratch-space/build-libpwiz3 dpkg-deb --build debian/.debhelper/libpwiz3/dbgsym-root debian/.debhelper/scratch-space/build-libpwiz3 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 pkgstriptranslations: processing libpwiz-dev (in debian/libpwiz-dev); do_strip: , oemstrip: pkgstriptranslations: processing libpwiz-tools-dbgsym (in debian/.debhelper/libpwiz-tools/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libpwiz3-dbgsym (in debian/.debhelper/libpwiz3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/control, package libpwiz-tools-dbgsym, directory debian/.debhelper/libpwiz-tools/dbgsym-root pkgstripfiles: processing control file: debian/libpwiz-dev/DEBIAN/control, package libpwiz-dev, directory debian/libpwiz-dev dpkg-deb: building package 'libpwiz-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-libpwiz-tools/libpwiz-tools-dbgsym_3.0.10827-4build1_amd64.deb'. Searching for duplicated docs in dependency libpwiz3... pkgstripfiles: processing control file: debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/control, package libpwiz3-dbgsym, directory debian/.debhelper/libpwiz3/dbgsym-root dpkg-deb: building package 'libpwiz3-dbgsym' in 'debian/.debhelper/scratch-space/build-libpwiz3/libpwiz3-dbgsym_3.0.10827-4build1_amd64.deb'. symlinking changelog.Debian.gz in libpwiz-dev to file in libpwiz3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpwiz-dev' in '../libpwiz-dev_3.0.10827-4build1_amd64.deb'. Renaming libpwiz-tools-dbgsym_3.0.10827-4build1_amd64.deb to libpwiz-tools-dbgsym_3.0.10827-4build1_amd64.ddeb mv debian/.debhelper/scratch-space/build-libpwiz-tools/libpwiz-tools-dbgsym_3.0.10827-4build1_amd64.deb ../libpwiz-tools-dbgsym_3.0.10827-4build1_amd64.ddeb Renaming libpwiz3-dbgsym_3.0.10827-4build1_amd64.deb to libpwiz3-dbgsym_3.0.10827-4build1_amd64.ddeb mv debian/.debhelper/scratch-space/build-libpwiz3/libpwiz3-dbgsym_3.0.10827-4build1_amd64.deb ../libpwiz3-dbgsym_3.0.10827-4build1_amd64.ddeb dpkg-deb --build debian/libpwiz-tools .. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing libpwiz-tools (in debian/libpwiz-tools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz-tools/DEBIAN/control, package libpwiz-tools, directory debian/libpwiz-tools INFO: pkgstripfiles: waiting for lock (libpwiz-tools) ... INFO: pkgstripfiles: waiting for lock (libpwiz-tools) ... dpkg-deb --build debian/libpwiz3 .. INFO: pkgstriptranslations version 141 INFO: pkgstripfiles: waiting for lock (libpwiz-tools) ... pkgstriptranslations: processing libpwiz3 (in debian/libpwiz3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz3/DEBIAN/control, package libpwiz3, directory debian/libpwiz3 pkgstripfiles: Truncating usr/share/doc/libpwiz3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpwiz3' in '../libpwiz3_3.0.10827-4build1_amd64.deb'. Searching for duplicated docs in dependency libpwiz3... symlinking changelog.Debian.gz in libpwiz-tools to file in libpwiz3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpwiz-tools' in '../libpwiz-tools_3.0.10827-4build1_amd64.deb'. entering the build-indep-stamp target cd doc/dox && doxygen warning: Tag `USE_WINDOWS_ENCODING' at line 11 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `DETAILS_AT_TOP' at line 33 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 70 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 130 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 177 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 178 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `MAX_DOT_GRAPH_WIDTH' at line 231 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `MAX_DOT_GRAPH_HEIGHT' at line 232 of file `Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/pwiz Searching for files in directory /<>/pwiz/analysis Searching for files in directory /<>/pwiz/analysis/common Searching for files in directory /<>/pwiz/analysis/demux Searching for files in directory /<>/pwiz/analysis/frequency Searching for files in directory /<>/pwiz/analysis/passive Searching for files in directory /<>/pwiz/analysis/peakdetect Searching for files in directory /<>/pwiz/analysis/peptideid Searching for files in directory /<>/pwiz/analysis/proteome_processing Searching for files in directory /<>/pwiz/analysis/spectrum_processing Searching for files in directory /<>/pwiz/data Searching for files in directory /<>/pwiz/data/common Searching for files in directory /<>/pwiz/data/identdata Searching for files in directory /<>/pwiz/data/misc Searching for files in directory /<>/pwiz/data/msdata Searching for files in directory /<>/pwiz/data/proteome Searching for files in directory /<>/pwiz/data/tradata Searching for files in directory /<>/pwiz/data/vendor_readers Searching for files in directory /<>/pwiz/data/vendor_readers/ABI Searching for files in directory /<>/pwiz/data/vendor_readers/ABI/T2D Searching for files in directory /<>/pwiz/data/vendor_readers/Agilent Searching for files in directory /<>/pwiz/data/vendor_readers/Bruker Searching for files in directory /<>/pwiz/data/vendor_readers/Shimadzu Searching for files in directory /<>/pwiz/data/vendor_readers/Thermo Searching for files in directory /<>/pwiz/data/vendor_readers/UIMF Searching for files in directory /<>/pwiz/data/vendor_readers/Waters Searching for files in directory /<>/pwiz/utility Searching for files in directory /<>/pwiz/utility/chemistry Searching for files in directory /<>/pwiz/utility/findmf Searching for files in directory /<>/pwiz/utility/findmf/base Searching for files in directory /<>/pwiz/utility/findmf/base/base Searching for files in directory /<>/pwiz/utility/findmf/base/base/utilities Searching for files in directory /<>/pwiz/utility/findmf/base/filter Searching for files in directory /<>/pwiz/utility/findmf/base/filter/utilities Searching for files in directory /<>/pwiz/utility/findmf/base/ms Searching for files in directory /<>/pwiz/utility/findmf/base/resample Searching for files in directory /<>/pwiz/utility/findmf/base/resample/utilities Searching for files in directory /<>/pwiz/utility/math Searching for files in directory /<>/pwiz/utility/minimxml Searching for files in directory /<>/pwiz/utility/misc Searching for files in directory /<>/pwiz/utility/proteome Searching for files in directory /<>/doc/dox Reading and parsing tag files Parsing files Preprocessing /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Parsing file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Preprocessing /<>/pwiz/analysis/common/DataFilter.hpp... Parsing file /<>/pwiz/analysis/common/DataFilter.hpp... Preprocessing /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Parsing file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Preprocessing /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Parsing file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Preprocessing /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Parsing file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Preprocessing /<>/pwiz/analysis/common/PeakDetector.hpp... Parsing file /<>/pwiz/analysis/common/PeakDetector.hpp... Preprocessing /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Parsing file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Preprocessing /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Parsing file /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/Smoother.hpp... Parsing file /<>/pwiz/analysis/common/Smoother.hpp... Preprocessing /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Parsing file /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Preprocessing /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Parsing file /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Preprocessing /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Parsing file /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Preprocessing /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Parsing file /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Preprocessing /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Parsing file /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Preprocessing /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Parsing file /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxSolver.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxSolver.hpp... Preprocessing /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Parsing file /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Preprocessing /<>/pwiz/analysis/demux/DemuxTypes.hpp... Parsing file /<>/pwiz/analysis/demux/DemuxTypes.hpp... Preprocessing /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Parsing file /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Preprocessing /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/IInterpolation.hpp... Parsing file /<>/pwiz/analysis/demux/IInterpolation.hpp... Preprocessing /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Parsing file /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Preprocessing /<>/pwiz/analysis/demux/MatrixIO.hpp... Parsing file /<>/pwiz/analysis/demux/MatrixIO.hpp... Preprocessing /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Parsing file /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Preprocessing /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Parsing file /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Preprocessing /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Parsing file /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Preprocessing /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Parsing file /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Preprocessing /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Parsing file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Parsing file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Preprocessing /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Parsing file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Parsing file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Parsing file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Preprocessing /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Parsing file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetector.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Preprocessing /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Parsing file /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Preprocessing /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Parsing file /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Preprocessing /<>/pwiz/analysis/passive/MetadataReporter.hpp... Parsing file /<>/pwiz/analysis/passive/MetadataReporter.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Parsing file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Parsing file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Preprocessing /<>/pwiz/analysis/passive/MSDataCache.hpp... Parsing file /<>/pwiz/analysis/passive/MSDataCache.hpp... Preprocessing /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Parsing file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Preprocessing /<>/pwiz/analysis/passive/PepXMLCat.hpp... Parsing file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Parsing file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionSIC.hpp... Parsing file /<>/pwiz/analysis/passive/RegionSIC.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionSlice.hpp... Parsing file /<>/pwiz/analysis/passive/RegionSlice.hpp... Preprocessing /<>/pwiz/analysis/passive/RegionTIC.hpp... Parsing file /<>/pwiz/analysis/passive/RegionTIC.hpp... Preprocessing /<>/pwiz/analysis/passive/RunSummary.hpp... Parsing file /<>/pwiz/analysis/passive/RunSummary.hpp... Preprocessing /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Parsing file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Preprocessing /<>/pwiz/analysis/passive/SpectrumTable.hpp... Parsing file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Preprocessing /<>/pwiz/analysis/passive/TabularConfig.hpp... Parsing file /<>/pwiz/analysis/passive/TabularConfig.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Parsing file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/Noise.hpp... Parsing file /<>/pwiz/analysis/peakdetect/Noise.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Preprocessing /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Parsing file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Preprocessing /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Parsing file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Preprocessing /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Parsing file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Preprocessing /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Parsing file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Preprocessing /<>/pwiz/analysis/Version.hpp... Parsing file /<>/pwiz/analysis/Version.hpp... Preprocessing /<>/pwiz/data/common/BinaryIndexStream.hpp... Parsing file /<>/pwiz/data/common/BinaryIndexStream.hpp... Preprocessing /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Parsing file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Preprocessing /<>/pwiz/data/common/cv.hpp... Parsing file /<>/pwiz/data/common/cv.hpp... Preprocessing /<>/pwiz/data/common/cvtest.cpp... Parsing file /<>/pwiz/data/common/cvtest.cpp... Preprocessing /<>/pwiz/data/common/CVTranslator.hpp... Parsing file /<>/pwiz/data/common/CVTranslator.hpp... Preprocessing /<>/pwiz/data/common/CVTranslatorTest.cpp... Parsing file /<>/pwiz/data/common/CVTranslatorTest.cpp... Preprocessing /<>/pwiz/data/common/diff_std.hpp... Parsing file /<>/pwiz/data/common/diff_std.hpp... Preprocessing /<>/pwiz/data/common/diff_std_test.cpp... Parsing file /<>/pwiz/data/common/diff_std_test.cpp... Preprocessing /<>/pwiz/data/common/Index.hpp... Parsing file /<>/pwiz/data/common/Index.hpp... Preprocessing /<>/pwiz/data/common/MemoryIndex.hpp... Parsing file /<>/pwiz/data/common/MemoryIndex.hpp... Preprocessing /<>/pwiz/data/common/MemoryIndexTest.cpp... Parsing file /<>/pwiz/data/common/MemoryIndexTest.cpp... Preprocessing /<>/pwiz/data/common/obo.hpp... Parsing file /<>/pwiz/data/common/obo.hpp... Preprocessing /<>/pwiz/data/common/obotest.cpp... Parsing file /<>/pwiz/data/common/obotest.cpp... Preprocessing /<>/pwiz/data/common/ParamTypes.hpp... Parsing file /<>/pwiz/data/common/ParamTypes.hpp... Preprocessing /<>/pwiz/data/common/ParamTypesTest.cpp... Parsing file /<>/pwiz/data/common/ParamTypesTest.cpp... Preprocessing /<>/pwiz/data/common/Unimod.hpp... Parsing file /<>/pwiz/data/common/Unimod.hpp... Preprocessing /<>/pwiz/data/common/UnimodTest.cpp... Parsing file /<>/pwiz/data/common/UnimodTest.cpp... Preprocessing /<>/pwiz/data/identdata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/identdata/DelimReader.hpp... Parsing file /<>/pwiz/data/identdata/DelimReader.hpp... Preprocessing /<>/pwiz/data/identdata/DelimWriter.hpp... Parsing file /<>/pwiz/data/identdata/DelimWriter.hpp... Preprocessing /<>/pwiz/data/identdata/Diff.hpp... Parsing file /<>/pwiz/data/identdata/Diff.hpp... Preprocessing /<>/pwiz/data/identdata/DiffTest.cpp... Parsing file /<>/pwiz/data/identdata/DiffTest.cpp... Preprocessing /<>/pwiz/data/identdata/examples.hpp... Parsing file /<>/pwiz/data/identdata/examples.hpp... Preprocessing /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Parsing file /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Preprocessing /<>/pwiz/data/identdata/IdentData.hpp... Parsing file /<>/pwiz/data/identdata/IdentData.hpp... Preprocessing /<>/pwiz/data/identdata/IdentDataFile.hpp... Parsing file /<>/pwiz/data/identdata/IdentDataFile.hpp... Preprocessing /<>/pwiz/data/identdata/IdentDataTest.cpp... Parsing file /<>/pwiz/data/identdata/IdentDataTest.cpp... Preprocessing /<>/pwiz/data/identdata/IO.hpp... Parsing file /<>/pwiz/data/identdata/IO.hpp... Preprocessing /<>/pwiz/data/identdata/IOTest.cpp... Parsing file /<>/pwiz/data/identdata/IOTest.cpp... Preprocessing /<>/pwiz/data/identdata/KwCVMap.hpp... Parsing file /<>/pwiz/data/identdata/KwCVMap.hpp... Preprocessing /<>/pwiz/data/identdata/KwCVMapTest.cpp... Parsing file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Preprocessing /<>/pwiz/data/identdata/MascotReader.hpp... Parsing file /<>/pwiz/data/identdata/MascotReader.hpp... Preprocessing /<>/pwiz/data/identdata/MzidPredicates.hpp... Parsing file /<>/pwiz/data/identdata/MzidPredicates.hpp... Preprocessing /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Parsing file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Preprocessing /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Parsing file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Preprocessing /<>/pwiz/data/identdata/Reader.hpp... Parsing file /<>/pwiz/data/identdata/Reader.hpp... Preprocessing /<>/pwiz/data/identdata/ReaderTest.cpp... Parsing file /<>/pwiz/data/identdata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/identdata/References.hpp... Parsing file /<>/pwiz/data/identdata/References.hpp... Preprocessing /<>/pwiz/data/identdata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/identdata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_mzid.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_protXML.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_protXML.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Preprocessing /<>/pwiz/data/identdata/Serializer_Text.hpp... Parsing file /<>/pwiz/data/identdata/Serializer_Text.hpp... Preprocessing /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Parsing file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Preprocessing /<>/pwiz/data/identdata/TextWriter.hpp... Parsing file /<>/pwiz/data/identdata/TextWriter.hpp... Preprocessing /<>/pwiz/data/identdata/Version.hpp... Parsing file /<>/pwiz/data/identdata/Version.hpp... Preprocessing /<>/pwiz/data/misc/CalibrationParameters.hpp... Parsing file /<>/pwiz/data/misc/CalibrationParameters.hpp... Preprocessing /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Parsing file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Preprocessing /<>/pwiz/data/misc/FrequencyData.hpp... Parsing file /<>/pwiz/data/misc/FrequencyData.hpp... Preprocessing /<>/pwiz/data/misc/FrequencyDataTest.cpp... Parsing file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Preprocessing /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Parsing file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Preprocessing /<>/pwiz/data/misc/MinimumPepXML.hpp... Parsing file /<>/pwiz/data/misc/MinimumPepXML.hpp... Preprocessing /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Parsing file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Preprocessing /<>/pwiz/data/misc/PeakData.hpp... Parsing file /<>/pwiz/data/misc/PeakData.hpp... Preprocessing /<>/pwiz/data/misc/PeakDataTest.cpp... Parsing file /<>/pwiz/data/misc/PeakDataTest.cpp... Preprocessing /<>/pwiz/data/misc/SampleDatum.hpp... Parsing file /<>/pwiz/data/misc/SampleDatum.hpp... Preprocessing /<>/pwiz/data/misc/SampleDatumTest.cpp... Parsing file /<>/pwiz/data/misc/SampleDatumTest.cpp... Preprocessing /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Parsing file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Preprocessing /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Parsing file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Parsing file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Parsing file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Preprocessing /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Parsing file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Preprocessing /<>/pwiz/data/msdata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/msdata/Diff.hpp... Parsing file /<>/pwiz/data/msdata/Diff.hpp... Preprocessing /<>/pwiz/data/msdata/DiffTest.cpp... Parsing file /<>/pwiz/data/msdata/DiffTest.cpp... Preprocessing /<>/pwiz/data/msdata/examples.hpp... Parsing file /<>/pwiz/data/msdata/examples.hpp... Preprocessing /<>/pwiz/data/msdata/Index_mzML.hpp... Parsing file /<>/pwiz/data/msdata/Index_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/IO.hpp... Parsing file /<>/pwiz/data/msdata/IO.hpp... Preprocessing /<>/pwiz/data/msdata/IOTest.cpp... Parsing file /<>/pwiz/data/msdata/IOTest.cpp... Preprocessing /<>/pwiz/data/msdata/LegacyAdapter.hpp... Parsing file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Preprocessing /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Parsing file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Preprocessing /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Parsing file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Preprocessing /<>/pwiz/data/msdata/MSData.hpp... Parsing file /<>/pwiz/data/msdata/MSData.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataFile.hpp... Parsing file /<>/pwiz/data/msdata/MSDataFile.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataFileTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSDataMerger.hpp... Parsing file /<>/pwiz/data/msdata/MSDataMerger.hpp... Preprocessing /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSDataTest.cpp... Parsing file /<>/pwiz/data/msdata/MSDataTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSnReaderTest.cpp... Parsing file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Preprocessing /<>/pwiz/data/msdata/MSNumpress.hpp... Parsing file /<>/pwiz/data/msdata/MSNumpress.hpp... Preprocessing /<>/pwiz/data/msdata/Reader.hpp... Parsing file /<>/pwiz/data/msdata/Reader.hpp... Preprocessing /<>/pwiz/data/msdata/ReaderTest.cpp... Parsing file /<>/pwiz/data/msdata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/msdata/References.hpp... Parsing file /<>/pwiz/data/msdata/References.hpp... Preprocessing /<>/pwiz/data/msdata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/msdata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MGF.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MSn.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzML.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Preprocessing /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Parsing file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Parsing file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumInfo.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumIterator.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListBase.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListCache.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Preprocessing /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Parsing file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Preprocessing /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Parsing file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Preprocessing /<>/pwiz/data/msdata/TextWriter.hpp... Parsing file /<>/pwiz/data/msdata/TextWriter.hpp... Preprocessing /<>/pwiz/data/msdata/Version.hpp... Parsing file /<>/pwiz/data/msdata/Version.hpp... Preprocessing /<>/pwiz/data/proteome/AminoAcid.hpp... Parsing file /<>/pwiz/data/proteome/AminoAcid.hpp... Preprocessing /<>/pwiz/data/proteome/AminoAcidTest.cpp... Parsing file /<>/pwiz/data/proteome/AminoAcidTest.cpp... Preprocessing /<>/pwiz/data/proteome/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/proteome/Diff.hpp... Parsing file /<>/pwiz/data/proteome/Diff.hpp... Preprocessing /<>/pwiz/data/proteome/DiffTest.cpp... Parsing file /<>/pwiz/data/proteome/DiffTest.cpp... Preprocessing /<>/pwiz/data/proteome/Digestion.hpp... Parsing file /<>/pwiz/data/proteome/Digestion.hpp... Preprocessing /<>/pwiz/data/proteome/DigestionTest.cpp... Parsing file /<>/pwiz/data/proteome/DigestionTest.cpp... Preprocessing /<>/pwiz/data/proteome/examples.hpp... Parsing file /<>/pwiz/data/proteome/examples.hpp... Preprocessing /<>/pwiz/data/proteome/Modification.hpp... Parsing file /<>/pwiz/data/proteome/Modification.hpp... Preprocessing /<>/pwiz/data/proteome/Peptide.hpp... Parsing file /<>/pwiz/data/proteome/Peptide.hpp... Preprocessing /<>/pwiz/data/proteome/PeptideTest.cpp... Parsing file /<>/pwiz/data/proteome/PeptideTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteinListCache.hpp... Parsing file /<>/pwiz/data/proteome/ProteinListCache.hpp... Preprocessing /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Parsing file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Preprocessing /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteomeData.hpp... Parsing file /<>/pwiz/data/proteome/ProteomeData.hpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Preprocessing /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Parsing file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Preprocessing /<>/pwiz/data/proteome/Reader.hpp... Parsing file /<>/pwiz/data/proteome/Reader.hpp... Preprocessing /<>/pwiz/data/proteome/Reader_FASTA.hpp... Parsing file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Preprocessing /<>/pwiz/data/proteome/ReaderTest.cpp... Parsing file /<>/pwiz/data/proteome/ReaderTest.cpp... Preprocessing /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Parsing file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Preprocessing /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Parsing file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Preprocessing /<>/pwiz/data/proteome/TextWriter.hpp... Parsing file /<>/pwiz/data/proteome/TextWriter.hpp... Preprocessing /<>/pwiz/data/proteome/Version.hpp... Parsing file /<>/pwiz/data/proteome/Version.hpp... Preprocessing /<>/pwiz/data/tradata/DefaultReaderList.hpp... Parsing file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Preprocessing /<>/pwiz/data/tradata/Diff.hpp... Parsing file /<>/pwiz/data/tradata/Diff.hpp... Preprocessing /<>/pwiz/data/tradata/DiffTest.cpp... Parsing file /<>/pwiz/data/tradata/DiffTest.cpp... Preprocessing /<>/pwiz/data/tradata/examples.hpp... Parsing file /<>/pwiz/data/tradata/examples.hpp... Preprocessing /<>/pwiz/data/tradata/IO.hpp... Parsing file /<>/pwiz/data/tradata/IO.hpp... Preprocessing /<>/pwiz/data/tradata/IOTest.cpp... Parsing file /<>/pwiz/data/tradata/IOTest.cpp... Preprocessing /<>/pwiz/data/tradata/Reader.hpp... Parsing file /<>/pwiz/data/tradata/Reader.hpp... Preprocessing /<>/pwiz/data/tradata/ReaderTest.cpp... Parsing file /<>/pwiz/data/tradata/ReaderTest.cpp... Preprocessing /<>/pwiz/data/tradata/References.hpp... Parsing file /<>/pwiz/data/tradata/References.hpp... Preprocessing /<>/pwiz/data/tradata/ReferencesTest.cpp... Parsing file /<>/pwiz/data/tradata/ReferencesTest.cpp... Preprocessing /<>/pwiz/data/tradata/Serializer_traML.hpp... Parsing file /<>/pwiz/data/tradata/Serializer_traML.hpp... Preprocessing /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Parsing file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Preprocessing /<>/pwiz/data/tradata/TextWriter.hpp... Parsing file /<>/pwiz/data/tradata/TextWriter.hpp... Preprocessing /<>/pwiz/data/tradata/TraData.hpp... Parsing file /<>/pwiz/data/tradata/TraData.hpp... Preprocessing /<>/pwiz/data/tradata/TraDataFile.hpp... Parsing file /<>/pwiz/data/tradata/TraDataFile.hpp... Preprocessing /<>/pwiz/data/tradata/TraDataFileTest.cpp... Parsing file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Preprocessing /<>/pwiz/data/tradata/TraDataTest.cpp... Parsing file /<>/pwiz/data/tradata/TraDataTest.cpp... Preprocessing /<>/pwiz/data/tradata/Version.hpp... Parsing file /<>/pwiz/data/tradata/Version.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Parsing file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Parsing file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Parsing file /<>/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Preprocessing /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Parsing file /<>/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Parsing file /<>/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Parsing file /<>/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Parsing file /<>/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Preprocessing /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Parsing file /<>/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Preprocessing /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Parsing file /<>/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Preprocessing /<>/pwiz/utility/chemistry/Chemistry.hpp... Parsing file /<>/pwiz/utility/chemistry/Chemistry.hpp... Preprocessing /<>/pwiz/utility/chemistry/ChemistryData.hpp... Parsing file /<>/pwiz/utility/chemistry/ChemistryData.hpp... Preprocessing /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Parsing file /<>/pwiz/utility/chemistry/ChemistryTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/Ion.hpp... Parsing file /<>/pwiz/utility/chemistry/Ion.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeTable.hpp... Preprocessing /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Parsing file /<>/pwiz/utility/chemistry/IsotopeTableTest.cpp... Preprocessing /<>/pwiz/utility/chemistry/MZTolerance.hpp... Parsing file /<>/pwiz/utility/chemistry/MZTolerance.hpp... Preprocessing /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Parsing file /<>/pwiz/utility/chemistry/MZToleranceTest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/base.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/base.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/basetest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/basetest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/constants.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/constants.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/copy_iftest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/copyif.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/copyif.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/cumsum.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/cumsumtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/diff.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/diff.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/difftest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/difftest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/interpolate.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/scale.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/scale.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/utilities/base.hpp... Preprocessing /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Parsing file /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/filter.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/filter.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Parsing file /<>/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Parsing file /<>/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Preprocessing /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Parsing file /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Parsing file /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Parsing file /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp... Preprocessing /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Parsing file /<>/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bin1d.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/breakspec.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/convert2dense.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Parsing file /<>/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Preprocessing /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Parsing file /<>/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Preprocessing /<>/pwiz/utility/math/erf.hpp... Parsing file /<>/pwiz/utility/math/erf.hpp... Preprocessing /<>/pwiz/utility/math/erfTest.cpp... Parsing file /<>/pwiz/utility/math/erfTest.cpp... Preprocessing /<>/pwiz/utility/math/HouseholderQR.hpp... Parsing file /<>/pwiz/utility/math/HouseholderQR.hpp... Preprocessing /<>/pwiz/utility/math/HouseholderQRTest.cpp... Parsing file /<>/pwiz/utility/math/HouseholderQRTest.cpp... Preprocessing /<>/pwiz/utility/math/LinearLeastSquares.hpp... Parsing file /<>/pwiz/utility/math/LinearLeastSquares.hpp... Preprocessing /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Parsing file /<>/pwiz/utility/math/LinearLeastSquaresTest.cpp... Preprocessing /<>/pwiz/utility/math/LinearSolver.hpp... Parsing file /<>/pwiz/utility/math/LinearSolver.hpp... Preprocessing /<>/pwiz/utility/math/LinearSolverTest.cpp... Parsing file /<>/pwiz/utility/math/LinearSolverTest.cpp... Preprocessing /<>/pwiz/utility/math/MatchedFilter.hpp... Parsing file /<>/pwiz/utility/math/MatchedFilter.hpp... Preprocessing /<>/pwiz/utility/math/MatchedFilterTest.cpp... Parsing file /<>/pwiz/utility/math/MatchedFilterTest.cpp... Preprocessing /<>/pwiz/utility/math/MatrixInverse.hpp... Parsing file /<>/pwiz/utility/math/MatrixInverse.hpp... Preprocessing /<>/pwiz/utility/math/OrderedPair.hpp... Parsing file /<>/pwiz/utility/math/OrderedPair.hpp... Preprocessing /<>/pwiz/utility/math/OrderedPairTest.cpp... Parsing file /<>/pwiz/utility/math/OrderedPairTest.cpp... Preprocessing /<>/pwiz/utility/math/Parabola.hpp... Parsing file /<>/pwiz/utility/math/Parabola.hpp... Preprocessing /<>/pwiz/utility/math/ParabolaTest.cpp... Parsing file /<>/pwiz/utility/math/ParabolaTest.cpp... Preprocessing /<>/pwiz/utility/math/qr.hpp... Parsing file /<>/pwiz/utility/math/qr.hpp... Preprocessing /<>/pwiz/utility/math/qrTest.cpp... Parsing file /<>/pwiz/utility/math/qrTest.cpp... Preprocessing /<>/pwiz/utility/math/round.hpp... Parsing file /<>/pwiz/utility/math/round.hpp... Preprocessing /<>/pwiz/utility/math/Stats.hpp... Parsing file /<>/pwiz/utility/math/Stats.hpp... Preprocessing /<>/pwiz/utility/math/StatsTest.cpp... Parsing file /<>/pwiz/utility/math/StatsTest.cpp... Preprocessing /<>/pwiz/utility/math/Types.hpp... Parsing file /<>/pwiz/utility/math/Types.hpp... Preprocessing /<>/pwiz/utility/minimxml/SAXParser.hpp... Parsing file /<>/pwiz/utility/minimxml/SAXParser.hpp... Preprocessing /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Parsing file /<>/pwiz/utility/minimxml/SAXParserTest.cpp... Preprocessing /<>/pwiz/utility/minimxml/XMLWriter.hpp... Parsing file /<>/pwiz/utility/minimxml/XMLWriter.hpp... Preprocessing /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Parsing file /<>/pwiz/utility/minimxml/XMLWriterTest.cpp... Preprocessing /<>/pwiz/utility/misc/almost_equal.hpp... Parsing file /<>/pwiz/utility/misc/almost_equal.hpp... Preprocessing /<>/pwiz/utility/misc/almost_equal_test.cpp... Parsing file /<>/pwiz/utility/misc/almost_equal_test.cpp... Preprocessing /<>/pwiz/utility/misc/Base64.hpp... Parsing file /<>/pwiz/utility/misc/Base64.hpp... Preprocessing /<>/pwiz/utility/misc/Base64Test.cpp... Parsing file /<>/pwiz/utility/misc/Base64Test.cpp... Preprocessing /<>/pwiz/utility/misc/CharIndexedVector.hpp... Parsing file /<>/pwiz/utility/misc/CharIndexedVector.hpp... Preprocessing /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Parsing file /<>/pwiz/utility/misc/ClickwrapPrompter.hpp... Preprocessing /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Parsing file /<>/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Preprocessing /<>/pwiz/utility/misc/Container.hpp... Parsing file /<>/pwiz/utility/misc/Container.hpp... Preprocessing /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Parsing file /<>/pwiz/utility/misc/cpp_cli_utilities.hpp... Preprocessing /<>/pwiz/utility/misc/DateTime.hpp... Parsing file /<>/pwiz/utility/misc/DateTime.hpp... Preprocessing /<>/pwiz/utility/misc/DateTimeTest.cpp... Parsing file /<>/pwiz/utility/misc/DateTimeTest.cpp... Preprocessing /<>/pwiz/utility/misc/endian.hpp... Parsing file /<>/pwiz/utility/misc/endian.hpp... Preprocessing /<>/pwiz/utility/misc/endian_test.cpp... Parsing file /<>/pwiz/utility/misc/endian_test.cpp... Preprocessing /<>/pwiz/utility/misc/Environment.hpp... Parsing file /<>/pwiz/utility/misc/Environment.hpp... Preprocessing /<>/pwiz/utility/misc/Exception.hpp... Parsing file /<>/pwiz/utility/misc/Exception.hpp... Preprocessing /<>/pwiz/utility/misc/ExceptionTest.cpp... Parsing file /<>/pwiz/utility/misc/ExceptionTest.cpp... Preprocessing /<>/pwiz/utility/misc/Export.hpp... Parsing file /<>/pwiz/utility/misc/Export.hpp... Preprocessing /<>/pwiz/utility/misc/FailTest.cpp... Parsing file /<>/pwiz/utility/misc/FailTest.cpp... Preprocessing /<>/pwiz/utility/misc/Filesystem.hpp... Parsing file /<>/pwiz/utility/misc/Filesystem.hpp... Preprocessing /<>/pwiz/utility/misc/FilesystemTest.cpp... Parsing file /<>/pwiz/utility/misc/FilesystemTest.cpp... Preprocessing /<>/pwiz/utility/misc/Image.hpp... Parsing file /<>/pwiz/utility/misc/Image.hpp... Preprocessing /<>/pwiz/utility/misc/IntegerSet.hpp... Parsing file /<>/pwiz/utility/misc/IntegerSet.hpp... Preprocessing /<>/pwiz/utility/misc/IntegerSetTest.cpp... Parsing file /<>/pwiz/utility/misc/IntegerSetTest.cpp... Preprocessing /<>/pwiz/utility/misc/IterationListener.hpp... Parsing file /<>/pwiz/utility/misc/IterationListener.hpp... Preprocessing /<>/pwiz/utility/misc/IterationListenerTest.cpp... Parsing file /<>/pwiz/utility/misc/IterationListenerTest.cpp... Preprocessing /<>/pwiz/utility/misc/mru_list.hpp... Parsing file /<>/pwiz/utility/misc/mru_list.hpp... Preprocessing /<>/pwiz/utility/misc/mru_list_test.cpp... Parsing file /<>/pwiz/utility/misc/mru_list_test.cpp... Preprocessing /<>/pwiz/utility/misc/MSIHandler.hpp... Parsing file /<>/pwiz/utility/misc/MSIHandler.hpp... Preprocessing /<>/pwiz/utility/misc/Once.hpp... Parsing file /<>/pwiz/utility/misc/Once.hpp... Preprocessing /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Parsing file /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Preprocessing /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Parsing file /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1.h... Parsing file /<>/pwiz/utility/misc/SHA1.h... Preprocessing /<>/pwiz/utility/misc/SHA1_ostream.hpp... Parsing file /<>/pwiz/utility/misc/SHA1_ostream.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Parsing file /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Preprocessing /<>/pwiz/utility/misc/SHA1Calculator.hpp... Parsing file /<>/pwiz/utility/misc/SHA1Calculator.hpp... Preprocessing /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Parsing file /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Preprocessing /<>/pwiz/utility/misc/shared_map.hpp... Parsing file /<>/pwiz/utility/misc/shared_map.hpp... Preprocessing /<>/pwiz/utility/misc/Singleton.hpp... Parsing file /<>/pwiz/utility/misc/Singleton.hpp... Preprocessing /<>/pwiz/utility/misc/Std.hpp... Parsing file /<>/pwiz/utility/misc/Std.hpp... Preprocessing /<>/pwiz/utility/misc/Stream.hpp... Parsing file /<>/pwiz/utility/misc/Stream.hpp... Preprocessing /<>/pwiz/utility/misc/String.hpp... Parsing file /<>/pwiz/utility/misc/String.hpp... Preprocessing /<>/pwiz/utility/misc/TabReader.hpp... Parsing file /<>/pwiz/utility/misc/TabReader.hpp... Preprocessing /<>/pwiz/utility/misc/TabReaderTest.cpp... Parsing file /<>/pwiz/utility/misc/TabReaderTest.cpp... Preprocessing /<>/pwiz/utility/misc/Timer.hpp... Parsing file /<>/pwiz/utility/misc/Timer.hpp... Preprocessing /<>/pwiz/utility/misc/unit.hpp... Parsing file /<>/pwiz/utility/misc/unit.hpp... Preprocessing /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Parsing file /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Preprocessing /<>/pwiz/utility/misc/virtual_map.hpp... Parsing file /<>/pwiz/utility/misc/virtual_map.hpp... Preprocessing /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Parsing file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Preprocessing /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Pars/<>/pwiz/utility/findmf/base/base/constants.hpp:28: warning: the name `Constants.h' supplied as the second argument in the \file statement is not an input file /<>/pwiz/utility/findmf/base/base/cumsum.hpp:27: warning: the name `cumsum.h' supplied as the second argument in the \file statement is not an input file /<>/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp:29: warning: the name `MassCompareFunctors.h' supplied as the second argument in the \file statement is not an input file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:42: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::frequency::FrequencyEstimatorSimple::Type() /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp:43: warning: documented symbol `enum PWIZ_API_DECL pwiz::frequency::TruncatedLorentzian::ParameterIndex' was not declared or defined. /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp:76: warning: documented symbol `enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzer::UpdateRequest' was not declared or defined. /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp:164: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzerDriver::Status() /<>/pwiz/data/common/cv.hpp:96: warning: documented symbol `enum PWIZ_API_DECL pwiz::cv::pwiz::cv::CVID' was not declared or defined. /<>/pwiz/data/common/Unimod.hpp:80: warning: member with no name found. /<>/pwiz/data/identdata/IdentDataFile.hpp:49: warning: documented symbol `enum PWIZ_API_DECL pwiz::identdata::IdentDataFile::pwiz::identdata::IdentDataFile::Format' was not declared or defined. /<>/pwiz/data/identdata/IO.hpp:211: warning: documented symbol `enum PWIZ_API_DECL pwiz::identdata::IO::AnalysisDataFlag' was not declared or defined. /<>/pwiz/data/identdata/IO.hpp:255: warning: documented symbol `enum PWIZ_API_DECL pwiz::identdata::IO::SequenceCollectionFlag' was not declared or defined. /<>/pwiz/data/misc/FrequencyData.hpp:54: warning: documented symbol `enum PWIZ_API_DECL pwiz::data::FrequencyData::IOMode' was not declared or defined. /<>/pwiz/data/msdata/IO.hpp:173: warning: documented symbol `enum PWIZ_API_DECL pwiz::msdata::IO::BinaryDataFlag' was not declared or defined. /<>/pwiz/data/msdata/IO.hpp:212: warning: documented symbol `enum PWIZ_API_DECL pwiz::msdata::IO::SpectrumListFlag' was not declared or defined. /<>/pwiz/data/msdata/MemoryMRUCache.hpp:35: warning: documented symbol `enum PWIZ_API_DECL pwiz::msdata::MemoryMRUCacheMode' was not declared or defined. /<>/pwiz/data/msdata/MSDataFile.hpp:49: warning: documented symbol `enum PWIZ_API_DECL pwiz::msdata::MSDataFile::pwiz::msdata::MSDataFile::Format' was not declared or defined. /<>/pwiz/data/proteome/AminoAcid.hpp:44: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::proteome::AminoAcid::pwiz::proteome::AminoAcid::Type() /<>/pwiz/data/proteome/Digestion.hpp:118: warning: no matching class member found for enum PWIZ_API_DECL pwiz::proteome::Digestion::pwiz::proteome::Digestion::Specificity() /<>/pwiz/data/proteome/Peptide.hpp:41: warning: documented symbol `enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationParsing' was not declared or defined. /<>/pwiz/data/proteome/Peptide.hpp:50: warning: documented symbol `enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationDelimiter' was not declared or defined. /<>/pwiz/data/proteome/ProteinListCache.hpp:37: warning: documented symbol `enum PWIZ_API_DECL pwiz::proteome::ProteinListCacheMode' was not declared or defined. /<>/pwiz/data/proteome/ProteomeDataFile.hpp:49: warning: documented symbol `enum PWIZ_API_DECL pwiz::proteome::ProteomeDataFile::pwiz::proteome::ProteomeDataFile::Format' was not declared or defined. /<>/pwiz/data/tradata/TraDataFile.hpp:45: warning: documented symbol `enum PWIZ_API_DECL pwiz::tradata::TraDataFile::pwiz::tradata::TraDataFile::Format' was not declared or defined. /<>/pwiz/utility/chemistry/Chemistry.hpp:79: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::chemistry::Element::pwiz::chemistry::Element::Type() /<>/pwiz/utility/chemistry/IsotopeCalculator.hpp:45: warning: documented symbol `enum PWIZ_API_DECL pwiz::chemistry::IsotopeCalculator::NormalizationFlags' was not declared or defined. /<>/pwiz/utility/math/LinearLeastSquares.hpp:34: warning: documented symbol `enum PWIZ_API_DECL pwiz::math::LinearLeastSquaresType' was not declared or defined. /<>/pwiz/utility/math/LinearSolver.hpp:47: warning: documented symbol `enum PWIZ_API_DECL pwiz::math::LinearSolverType' was not declared or defined. /<>/pwiz/utility/minimxml/XMLWriter.hpp:53: warning: documented symbol `enum PWIZ_API_DECL pwiz::minimxml::XMLWriter::pwiz::minimxml::XMLWriter::StyleFlag' was not declared or defined. /<>/pwiz/utility/misc/Image.hpp:64: warning: documented symbol `enum PWIZ_API_DECL pwiz::util::Image::Align' was not declared or defined. /<>/pwiz/utility/misc/Image.hpp:65: warning: documented symbol `enum PWIZ_API_DECL pwiz::util::Image::Size' was not declared or defined. ing file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Preprocessing /<>/pwiz/Version.hpp... Parsing file /<>/pwiz/Version.hpp... Preprocessing /<>/doc/dox/mainpage.hpp... Parsing file /<>/doc/dox/mainpage.hpp... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file mainpage.hpp... Generating code for file /<>/pwiz/analysis/common/CwtPeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Generating code for file /<>/pwiz/analysis/common/DataFilter.hpp... Generating code for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Generating code for file /<>/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Generating code for file /<>/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Generating code for file /<>/pwiz/analysis/common/PeakDetector.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetector.hpp... Generating code for file /<>/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Generating code for file /<>/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/Smoother.hpp... Generating code for file /<>/pwiz/analysis/common/WhittakerSmoother.hpp... Generating code for file /<>/pwiz/analysis/common/WhittakerSmootherTest.cpp... Generating code for file /<>/pwiz/analysis/common/ZeroSampleFiller.hpp... Generating code for file /<>/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Generating code for file /<>/pwiz/analysis/demux/CubicHermiteSpline.hpp... Generating code for file /<>/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugReader.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxDebugWriter.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxHelpers.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxHelpersTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxSolver.hpp... Generating code for file /<>/pwiz/analysis/demux/DemuxSolverTest.cpp... Generating code for file /<>/pwiz/analysis/demux/DemuxTypes.hpp... Generating code for file /<>/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Generating code for file /<>/pwiz/analysis/demux/IDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/IInterpolation.hpp... Generating code for file /<>/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Generating code for file /<>/pwiz/analysis/demux/MatrixIO.hpp... Generating code for file /<>/pwiz/analysis/demux/MatrixIOTest.cpp... Generating code for file /<>/pwiz/analysis/demux/MSXDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Generating code for file /<>/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Generating code for file /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Generating code for file /<>/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/DerivativeTest.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Generating code for file /<>/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParameterEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParametrizedFunction.hpp... Generating code for file /<>/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Generating code for file /<>/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Generating code for file /<>/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Generating code for file /<>/pwiz/analysis/passive/MetadataReporter.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataAnalyzer.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Generating code for file /<>/pwiz/analysis/passive/MSDataCache.hpp... Generating code for file /<>/pwiz/analysis/passive/MSDataCacheTest.cpp... Generating code for file /<>/pwiz/analysis/passive/PepXMLCat.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionAnalyzer.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionSIC.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionSlice.hpp... Generating code for file /<>/pwiz/analysis/passive/RegionTIC.hpp... Generating code for file /<>/pwiz/analysis/passive/RunSummary.hpp... Generating code for file /<>/pwiz/analysis/passive/SpectrumBinaryData.hpp... Generating code for file /<>/pwiz/analysis/passive/SpectrumTable.hpp... Generating code for file /<>/pwiz/analysis/passive/TabularConfig.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetector.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureModeler.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/MZRTField.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/Noise.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/NoiseTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelGrower.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelPicker.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakExtractor.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFinder.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFitter.hpp... Generating code for file /<>/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_flat.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideIDMap.hpp... Generating code for file /<>/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Generating code for file /<>/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating code for file /<>/pwiz/analysis/spectrum_process/<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /<>/pwiz/data/common/cv.hpp:4422: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4425: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:717: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:7731: warning: Found unknown command `\t' /<>/pwiz/data/common/cv.hpp:720: warning: Found unknown command `\LDI' /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found ing/SpectrumListFactoryTest.cpp... Generating code for file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating code for file /<>/pwiz/analysis/Version.hpp... Generating code for file /<>/pwiz/data/identdata/Version.hpp... Generating code for file /<>/pwiz/data/msdata/Version.hpp... Generating code for file /<>/pwiz/data/proteome/Version.hpp... Generating code for file /<>/pwiz/data/tradata/Version.hpp... Generating code for file /<>/pwiz/Version.hpp... Generating code for file /<>/pwiz/data/common/BinaryIndexStream.hpp... Generating code for file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating code for file /<>/pwiz/data/common/cv.hpp... Generating code for file /<>/pwiz/data/common/cvtest.cpp... Generating code for file /<>/pwiz/data/common/CVTranslator.hpp... Generating code for file /<>/pwiz/data/common/CVTranslatorTest.cpp... Generating code for file /<>/pwiz/data/common/diff_std.hpp... Generating code for file /<>/pwiz/data/common/diff_std_test.cpp... Generating code for file /<>/pwiz/data/common/Index.hpp... Generating code for file /<>/pwiz/data/common/MemoryIndex.hpp... Generating code for file /<>/pwiz/data/common/MemoryIndexTest.cpp... Generating code for file /<>/pwiz/data/common/obo.hpp... Generating code for file /<>/pwiz/data/common/obotest.cpp... Generating code for file /<>/pwiz/data/common/ParamTypes.hpp... Generating code for file /<>/pwiz/data/common/ParamTypesTest.cpp... Generating code for file /<>/pwiz/data/common/Unimod.hpp... Generating code for file /<>/pwiz/data/common/UnimodTest.cpp... Generating code for file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Generating code for file /<>/pwiz/data/identdata/DelimReader.hpp... Generating code for file /<>/pwiz/data/identdata/DelimWriter.hpp... Generating code for file /<>/pwiz/data/identdata/Diff.hpp... Generating code for file /<>/pwiz/data/msdata/Diff.hpp... Generating code for file /<>/pwiz/data/proteome/Diff.hpp... Generating code for file /<>/pwiz/data/tradata/Diff.hpp... Generating code for file /<>/pwiz/utility/findmf/base/base/diff.hpp... Generating code for file /<>/pwiz/data/identdata/DiffTest.cpp... Generating code for file /<>/pwiz/data/msdata/DiffTest.cpp... Generating code for file /<>/pwiz/data/proteome/DiffTest.cpp... Generating code for file /<>/pwiz/data/tradata/DiffTest.cpp... Generating code for file /<>/pwiz/utility/findmf/base/base/difftest.cpp... Generating code for file /<>/pwiz/data/identdata/examples.hpp... Generating code for file /<>/pwiz/data/msdata/examples.hpp... Generating code for file /<>/pwiz/data/proteome/examples.hpp... Generating code for file /<>/pwiz/data/tradata/examples.hpp... Generating code for file /<>/pwiz/data/identdata/ExtendedReadTest.cpp... Generating code for file /<>/pwiz/data/identdata/IdentData.hpp... Generating code for file /<>/pwiz/data/identdata/IdentDataFile.hpp... Generating code for file /<>/pwiz/data/identdata/IdentDataTest.cpp... Generating code for file /<>/pwiz/data/identdata/IO.hpp... Generating code for file /<>/pwiz/data/msdata/IO.hpp... Generating code for file /<>/pwiz/data/tradata/IO.hpp... Generating code for file /<>/pwiz/data/identdata/IOTest.cpp... Generating code for file /<>/pwiz/data/msdata/IOTest.cpp... Generating code for file /<>/pwiz/data/tradata/IOTest.cpp... Generating code for file /<>/pwiz/data/identdata/KwCVMap.hpp... Generating code for file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Generating code for file /<>/pwiz/data/identdata/MascotReader.hpp... Generating code for file /<>/pwiz/data/identdata/MzidPredicates.hpp... Generating code for file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Generating code for file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating code for file /<>/pwiz/data/identdata/Reader.hpp... Generating code for file /<>/pwiz/data/msdata/Reader.hpp... Generating code for file /<>/pwiz/data/proteome/Reader.hpp... Generating code for file /<>/pwiz/data/tradata/Reader.hpp... Generating code for file /<>/pwiz/data/identdata/ReaderTest.cpp... Generating code for file /<>/pwiz/data/msdata/ReaderTest.cpp... Generating code for file /<>/pwiz/data/proteome/ReaderTest.cpp... Generating code for file /<>/pwiz/data/tradata/ReaderTest.cpp... Generating code for file /<>/pwiz/data/identdata/References.hpp... Generating code for file /<>/pwiz/data/msdata/References.hpp... Generating code for file /<>/pwiz/data/tradata/References.hpp... Generating code for file /<>/pwiz/data/identdata/ReferencesTest.cpp... Generating code for file /<>/pwiz/data/msdata/ReferencesTest.cpp... Generating code for file /<>/pwiz/data/tradata/ReferencesTest.cpp... Generating code for file /<>/pwiz/data/identdata/Serializer_mzid.hpp... Generating code for file /<>/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating code for file /<>/pwiz/data/identdata/Serializer_pepXML.hpp... Generating code for file /<>/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating code for file /<>/pwiz/data/identdata/Serializer_protXML.hpp... Generating code for file /<>/pwiz/data/identdata/Serializer_protXML_Test.cpp... Genera/<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found ting code for file /<>/pwiz/data/identdata/Serializer_Text.hpp... Generating code for file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating code for file /<>/pwiz/data/identdata/TextWriter.hpp... Generating code for file /<>/pwiz/data/msdata/TextWriter.hpp... Generating code for file /<>/pwiz/data/proteome/TextWriter.hpp... Generating code for file /<>/pwiz/data/tradata/TextWriter.hpp... Generating code for file /<>/pwiz/data/misc/CalibrationParameters.hpp... Generating code for file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Generating code for file /<>/pwiz/data/misc/FrequencyData.hpp... Generating code for file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Generating code for file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Generating code for file /<>/pwiz/data/misc/MinimumPepXML.hpp... Generating code for file /<>/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating code for file /<>/pwiz/data/misc/PeakData.hpp... Generating code for file /<>/pwiz/data/misc/PeakDataTest.cpp... Generating code for file /<>/pwiz/data/misc/SampleDatum.hpp... Generating code for file /<>/pwiz/data/misc/SampleDatumTest.cpp... Generating code for file /<>/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating code for file /<>/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating code for file /<>/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating code for file /<>/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/ChromatogramListBase.hpp... Generating code for file /<>/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Generating code for file /<>/pwiz/data/msdata/Index_mzML.hpp... Generating code for file /<>/pwiz/data/msdata/LegacyAdapter.hpp... Generating code for file /<>/pwiz/data/msdata/LegacyAdapterTest.cpp... Generating code for file /<>/pwiz/data/msdata/MemoryMRUCache.hpp... Generating code for file /<>/pwiz/data/msdata/MSData.hpp... Generating code for file /<>/pwiz/data/msdata/MSDataFile.hpp... Generating code for file /<>/pwiz/data/msdata/MSDataFileTest.cpp... Generating code for file /<>/pwiz/data/msdata/MSDataMerger.hpp... Generating code for file /<>/pwiz/data/msdata/MSDataMergerTest.cpp... Generating code for file /<>/pwiz/data/msdata/MSDataTest.cpp... Generating code for file /<>/pwiz/data/msdata/MSnReaderTest.cpp... Generating code for file /<>/pwiz/data/msdata/MSNumpress.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_MGF.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_MGF_Test.cpp... Generating code for file /<>/pwiz/data/msdata/Serializer_MSn.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_MSn_Test.cpp... Generating cod/<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found e for file /<>/pwiz/data/msdata/Serializer_mzML.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Generating code for file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_mzML.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_mzXML.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListBase.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListBaseTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListCache.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListCacheTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListWrapper.hpp... Generating code for file /<>/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Generating code for file /<>/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Generating code for file /<>/pwiz/data/proteome/AminoAcid.hpp... Generating code for file /<>/pwiz/data/proteome/AminoAcidTest.cpp... Generating code for file /<>/pwiz/data/proteome/Digestion.hpp... Generating code for file /<>/pwiz/data/proteome/DigestionTest.cpp... Generating code for file /<>/pwiz/data/proteome/Modification.hpp... Generating code for file /<>/pwiz/data/proteome/Peptide.hpp... Generating code for file /<>/pwiz/data/proteome/PeptideTest.cpp... Generating code for file /<>/pwiz/data/proteome/ProteinListCache.hpp... Generating code for file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Generating code for file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Generating code for file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Generating code for file /<>/pwiz/data/proteome/ProteomeData.hpp... Generating code for file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Generating code for file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Generating code for file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Generating code for file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Generating code for file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Generating code for file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Generating code for file /<>/pwiz/data/tradata/Serializer_traML.hpp... Generating code for file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Generating code for file /<>/pwiz/data/tradata/TraData.hpp... Generating code for file /<>/pwiz/data/tradata/TraDataFile.hpp... Generating code for file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Generating code for file /<>/pwiz/data/tradata/TraDataTest.cpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Generating code for file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... 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Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Generating docs for file /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating docs for file /<>/pwiz/analysis/Version.hpp... Generating docs for file /<>/pwiz/data/identdata/Version.hpp... Generating docs for file /<>/pwiz/data/msdata/Version.hpp... Generating docs for file /<>/pwiz/data/proteome/Version.hpp... Generating docs for file /<>/pwiz/data/tradata/Version.hpp... Generating docs for/<>/pwiz/data/common/cv.hpp:717: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:720: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:4422: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4425: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:7731: warning: Found unknown command `\t' /<>/pwiz/data/common/cv.hpp:717: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:720: warning: Found unknown command `\LDI' /<>/pwiz/data/common/cv.hpp:4422: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:4425: warning: explicit link request to 'Peptides' could not be resolved /<>/pwiz/data/common/cv.hpp:7731: warning: Found unknown command `\t' file /<>/pwiz/Version.hpp... Generating docs for file /<>/pwiz/data/common/BinaryIndexStream.hpp... Generating docs for file /<>/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating docs for file /<>/pwiz/data/common/cv.hpp... Generating docs for file /<>/pwiz/data/common/cvtest.cpp... Generating docs for file /<>/pwiz/data/common/CVTranslator.hpp... Generating docs for file /<>/pwiz/data/common/CVTranslatorTest.cpp... Generating docs for file /<>/pwiz/data/common/diff_std.hpp... Generating docs for file /<>/pwiz/data/common/diff_std_test.cpp... Generating docs for file /<>/pwiz/data/common/Index.hpp... Generating docs for file /<>/pwiz/data/common/MemoryIndex.hpp... Generating docs for file /<>/pwiz/data/common/MemoryIndexTest.cpp... Generating docs for file /<>/pwiz/data/common/obo.hpp... Generating docs for file /<>/pwiz/data/common/obotest.cpp... Generating docs for file /<>/pwiz/data/common/ParamTypes.hpp... Generating docs for file /<>/pwiz/data/common/ParamTypesTest.cpp... Generating docs for file /<>/pwiz/data/common/Unimod.hpp... Generating docs for file /<>/pwiz/data/common/UnimodTest.cpp... Generating docs for file /<>/pwiz/data/identdata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/msdata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/proteome/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/tradata/DefaultReaderList.hpp... Generating docs for file /<>/pwiz/data/identdata/DelimReader.hpp... Generating docs for file /<>/pwiz/data/identdata/DelimWriter.hpp... Generating docs for file /<>/pwiz/data/identdata/Diff.hpp... Generating docs for file /<>/pwiz/data/msdata/Diff.hpp... Generating docs for file /<>/pwiz/data/proteome/Diff.hpp... Generating docs for file /<>/pwiz/data/tradata/Diff.hpp... Generating docs for file /<>/pwiz/utility/findmf/base/base/diff.hpp... Generating docs for file /<>/pwiz/data/identdata/DiffTest.cpp... Generating docs for file /<>/pwiz/data/msdata/DiffTest.cpp... Generating docs for file /<>/pwiz/data/proteome/DiffTest.cpp... 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Generating docs for file /<>/pwiz/data/tradata/IOTest.cpp... Generating docs for file /<>/pwiz/data/identdata/KwCVMap.hpp... Generating docs for file /<>/pwiz/data/identdata/KwCVMapTest.cpp... Generating docs for file /<>/pwiz/data/identdata/MascotReader.hpp... Generating docs for file /<>/pwiz/data/identdata/MzidPredicates.hpp... Generating docs for file /<>/pwiz/data/identdata/Pep2MzIdent.hpp... Generating docs for file /<>/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating docs for file /<>/pwiz/data/identdata/Reader.hpp... Generating docs for file /<>/pwiz/data/msdata/Reader.hpp... Generating docs for file /<>/pwiz/data/proteome/Reader.hpp... Generating docs for file /<>/pwiz/data/tradata/Reader.hpp... Generating docs for file /<>/pwiz/data/identdata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/msdata/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ReaderTest.cpp... Generating docs for file /<>/pwiz/data/tradata/ReaderTest.cpp... 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Generating docs for file /<>/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating docs for file /<>/pwiz/data/identdata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/msdata/TextWriter.hpp... Generating docs for file /<>/pwiz/data/proteome/TextWriter.hpp... Generating docs for file /<>/pwiz/data/tradata/TextWriter.hpp... Generating docs for file /build/libpwiz-d22/<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' bHf/libpwiz-3.0.10827/pwiz/data/misc/CalibrationParameters.hpp... Generating docs for file /<>/pwiz/data/misc/CalibrationParametersTest.cpp... Generating docs for file /<>/pwiz/data/misc/FrequencyData.hpp... Generating docs for file /<>/pwiz/data/misc/FrequencyDataTest.cpp... Generating docs for file /<>/pwiz/data/misc/FrequencyDataTestData.hpp... Generating docs for file /<>/pwiz/data/misc/MinimumPepXML.hpp... 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Generating docs for file /<>/pwiz/data/msdata/Serializer_mzML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzXML.hpp... Generating docs for file /<>/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SHA1OutputObserver.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumInfo.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumInfoTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumIterator.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumIteratorTest.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_BTDX.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MGF.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MSn.hpp... Generating docs for file /<>/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... 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Generating docs for file /<>/pwiz/data/proteome/Digestion.hpp... Generating docs for file /<>/pwiz/data/proteome/DigestionTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Modification.hpp... Generating docs for file /<>/pwiz/data/proteome/Peptide.hpp... Generating docs for file /<>/pwiz/data/proteome/PeptideTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListCache.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListCacheTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListWrapper.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteinListWrapperTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeData.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataFile.hpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataFileTest.cpp... Generating docs for file /<>/pwiz/data/proteome/ProteomeDataTest.cpp... Generating docs for file /<>/pwiz/data/proteome/Reader_FASTA.hpp... Generating docs for file /<>/pwiz/data/proteome/Serializer_FASTA.hpp... Generating docs for file /<>/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Generating docs for file /<>/pwiz/data/tradata/Serializer_traML.hpp... Generating docs for file /<>/pwiz/data/tradata/Serializer_traML_Test.cpp... Generating docs for file /<>/pwiz/data/tradata/TraData.hpp... Generating docs for file /<>/pwiz/data/tradata/TraDataFile.hpp... Generating docs for file /<>/pwiz/data/tradata/TraDataFileTest.cpp... Generating docs for file /<>/pwiz/data/tradata/TraDataTest.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Generating docs for file /<>/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Generating docs for file /<>/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... 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Generating docs for file /<>/pwiz/utility/misc/Filesystem.hpp... Generating docs for file /<>/pwiz/utility/misc/FilesystemTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Image.hpp... Generating docs for file /<>/pwiz/utility/misc/IntegerSet.hpp... Generating docs for file /<>/pwiz/utility/misc/IntegerSetTest.cpp... Generating docs for file /<>/pwiz/utility/misc/IterationListener.hpp... Generating docs for file /<>/pwiz/utility/misc/IterationListenerTest.cpp... Generating docs for file /<>/pwiz/utility/misc/mru_list.hpp... Generating docs for file /<>/pwiz/utility/misc/mru_list_test.cpp... Generating docs for file /<>/pwiz/utility/misc/MSIHandler.hpp... Generating docs for file /<>/pwiz/utility/misc/Once.hpp... Generating docs for file /<>/pwiz/utility/misc/optimized_lexical_cast.hpp... Generating docs for file /<>/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1.h... Generating docs for file /<>/pwiz/utility/misc/SHA1_ostream.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1_ostream_test.cpp... Generating docs for file /<>/pwiz/utility/misc/SHA1Calculator.hpp... Generating docs for file /<>/pwiz/utility/misc/SHA1CalculatorTest.cpp... Generating docs for file /<>/pwiz/utility/misc/shared_map.hpp... Generating docs for file /<>/pwiz/utility/misc/Singleton.hpp... Generating docs for file /<>/pwiz/utility/misc/Std.hpp... Generating docs for file /<>/pwiz/utility/misc/Stream.hpp... Generating docs for file /<>/pwiz/utility/misc/String.hpp... Generating docs for file /<>/pwiz/utility/misc/TabReader.hpp... Generating docs for file /<>/pwiz/utility/misc/TabReaderTest.cpp... Generating docs for file /<>/pwiz/utility/misc/Timer.hpp... Generating docs for file /<>/pwiz/utility/misc/unit.hpp... Generating docs for file /<>/pwiz/utility/misc/VendorReaderTestHarness.hpp... Generating docs for file /<>/pwiz/utility/misc/virtual_map.hpp... Generating docs for file /<>/pwiz/utility/proteome/IPIFASTADatabase.hpp... Generating docs for file /<>/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AnotherRootHandler... Generating docs for compound BadListener... Generating docs for compound CancelListener... Generating docs for compound CancelProgressCallback... Generating docs for compound CSHA1... Generating docs for compound CubicHermiteSplineTest... Generating docs for compound CustomPair... Generating docs for compound Datum... Generating docs for compound DefaultArrayLengthSorter... Generating docs for compound DemuxDebugRWTest... Generating docs for compound DemuxHelpersTest... Generating docs for compound DemuxSolverTest... Generating docs for compound DemuxTest... Generating docs for nested compound DemuxTest::MSDPair... Generating docs for compound DigestedPeptideLessThan... Generating docs for compound EnumConstantNotPresentException... Generating docs for compound EnzymePtr_missedCleavages... Generating docs for compound EnzymePtr_specificity... Generating docs for compound EvenMS2Predicate... Generating docs for compound EvenPredicate... Generating docs for compound EvenRequester... Generating docs for compound Fifth... Generating docs for compound FifthHandler... Generating docs for compound FilterWrapper... Generating docs for compound First... Generating docs for compound FirstHandler... Generating docs for compound FTSieve... Generating docs for compound Goober... Generating docs for compound HasBinaryDataPredicate... Generating docs for compound IInterpolation... Generating docs for compound Is_T2D_Directory... Generating docs for compound IsDirectory... Generating docs for compound isoChain... Generating docs for compound isotopeChain... Generating docs for compound IsRawData... Generating docs for compound IsRawFile... Generating docs for compound IsWiffFile... Generating docs for compound MatrixIOTest... Generating docs for compound MSDataWithSettableVersion... Generating docs for compound MSLevelSorter... Generating docs for compound MyBase... Generating docs for compound MyPred... Generating docs for compound MyWrapper... Generating docs for compound mzrtEqual... Generating docs for compound NestedHandler... Generating docs for compound OneMinusAbs... Generating docs for compound pairData... Generating docs for compound ParametrizedCosine... Generating docs for compound parentIon... Generating docs for compound precursorGroup... Generating docs for compound PrintAttribute... Generating docs for compound PrintEventHandler... Generating docs for compound RawMassDatum... Generating docs for compound Reader1... Generating docs for nested compound Reader1::Config... Generating docs for nested compound Reader1::ReaderConfig... Generating docs for compound Reader2... Generating docs for nested compound Reader2::Config... Generating docs for nested compound Reader2::ReaderConfig... Generating docs for compound ridgeLine... Generating docs for compound Root... Generating docs for compound RootHandler... Generating docs for compound rtimeMap... Generating docs for compound scoreChain... Generating docs for compound Second... Generating docs for compound SecondHandler... Generating docs for compound SelectedIndexPredicate... Generating docs for compound SetRetentionTime... Generating docs for compound SHA1_WORKSPACE_BLOCK... Generating docs for compound Simple... Generating docs for compound SimpleAnalyzer... Generating docs for compound SimpleProgressCallback... Generating docs for compound SpectrumPeakExtractorTest... Generating docs for compound TestAminoAcid... Generating docs for compound TestChargeStateCalculator... Generating docs for compound TestData... Generating docs for compound TestDatum... Generating docs for compound TestDeisotopeCalculator... Generating docs for compound TestDeisotoper... Generating docs for compound TestETDMassFilter... Generating docs for compound TestFormula... Generating docs for compound TestFragmentation... Generating docs for compound TestInfo... Generating docs for compound TestIterationListener... Generating docs for compound TestIterationListener_WithCancel... Generating docs for compound TestListener... Generating docs for compound TestMetadataFixer... Generating docs for compound TestModification... Generating docs for compound TestModifiedPeptide... Generating docs for compound TestMS2Denoise... Generating docs for compound TestOperator... Generating docs for compound TestOutputObserver... Generating docs for compound TestPair... Generating docs for compound TestPathmask... Generating docs for compound TestPeptide... Generating docs for compound TestReader... Generating docs for compound TestScanSummerCalculator... Generating docs for compound TestSpectrumInfo... Generating docs for compound TestThresholder... Generating docs for compound ThreadStatus... Generating docs for compound UserParamNameIs... Generating docs for compound WriteCVParam... Generating namespace index... Generating docs for namespace boost Generating docs for namespace boost::date_time Generating docs for namespace DemuxTypes Generating docs for namespace pwiz Generating docs for compound pwiz::Version... Generating docs for namespace pwiz::analysis Generating docs for compound pwiz::analysis::analyzer_strings... Generating docs for compound pwiz::analysis::analyzer_strings< MetadataReporter >... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSIC >... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSlice >... Generating docs for compound pwiz::analysis::analyzer_strings< RegionTIC >... Generating docs for compound pwiz::analysis::analyzer_strings< RunSummary >... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumBinaryData >... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumTable >... Generating docs for compound pwiz::analysis::ChromatogramDataFilter... Generating docs for compound pwiz::analysis::CubicHermiteSpline... Generating docs for compound pwiz::analysis::CwtPeakDetector... Generating docs for compound pwiz::analysis::DemuxDebugReader... Generating docs for compound pwiz::analysis::DemuxDebugWriter... Generating docs for compound pwiz::analysis::DemuxSolver... Generating docs for compound pwiz::analysis::DemuxWindow... Generating docs for compound pwiz::analysis::ExtraZeroSamplesFilter... Generating docs for compound pwiz::analysis::FeatureDetector... Generating docs for compound pwiz::analysis::FeatureDetectorPeakel... Generating docs for nested compound pwiz::analysis::FeatureDetectorPeakel::Config... Generating docs for compound pwiz::analysis::FeatureDetectorSimple... Generating docs for compound pwiz::analysis::FeatureModeler... Generating docs for compound pwiz::analysis::FeatureModeler_Gaussian... Generating docs for compound pwiz::analysis::IDemultiplexer... Generating docs for compound pwiz::analysis::IPrecursorMaskCodec... Generating docs for compound pwiz::analysis::IsolationWindow... Generating docs for compound pwiz::analysis::IsoWindowHasher... Generating docs for compound pwiz::analysis::LocalMaximumPeakDetector... Generating docs for compound pwiz::analysis::MatrixIO... Generating docs for compound pwiz::analysis::MetadataReporter... Generating docs for compound pwiz::analysis::MS2Deisotoper... Generating docs for nested compound pwiz::analysis::MS2Deisotoper::Config... Generating docs for compound pwiz::analysis::MS2NoiseFilter... Generating docs for nested compound pwiz::analysis::MS2NoiseFilter::Config... Generating docs for compound pwiz::analysis::MSDataAnalyzer... Generating docs for nested compound pwiz::analysis::MSDataAnalyzer::DataInfo... Generating docs for compound pwiz::analysis::MSDataAnalyzerContainer... Generating docs for compound pwiz::analysis::MSDataAnalyzerDriver... Generating docs for nested compound pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback... Generating docs for compound pwiz::analysis::MSDataCache... Generating docs for nested compound pwiz::analysis::MSDataCache::Config... Generating docs for compound pwiz::analysis::MSXDemultiplexer... Generating docs for nested compound pwiz::analysis::MSXDemultiplexer::Params... Generating docs for compound pwiz::analysis::MZRTField... Generating docs for compound pwiz::analysis::NNLSSolver... Generating docs for compound pwiz::analysis::Noise... Generating docs for compound pwiz::analysis::NoiseCalculator... Generating docs for compound pwiz::analysis::NoiseCalculator_2Pass... Generating docs for nested compound pwiz::analysis::NoiseCalculator_2Pass::Config... Generating docs for compound pwiz::analysis::NoVendorPeakPickingException... Generating docs for compound pwiz::analysis::OverlapDemultiplexer... Generating docs for nested compound pwiz::analysis::OverlapDemultiplexer::Params... Generating docs for compound pwiz::analysis::Peak... Generating docs for compound pwiz::analysis::PeakDetector... Generating docs for compound pwiz::analysis::PeakelGrower... Generating docs for compound pwiz::analysis::PeakelGrower_Proximity... Generating docs for nested compound pwiz::analysis::PeakelGrower_Proximity::Config... Generating docs for compound pwiz::analysis::PeakelPicker... Generating docs for compound pwiz::analysis::PeakelPicker_Basic... Generating docs for nested compound pwiz::analysis::PeakelPicker_Basic::Config... Generating docs for compound pwiz::analysis::PeakExtractor... Generating docs for compound pwiz::analysis::PeakFamilyDetector... Generating docs for compound pwiz::analysis::PeakFamilyDetectorFT... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::Config... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::NoDataException... Generating docs for compound pwiz::analysis::PeakFinder... Generating docs for compound pwiz::analysis::PeakFinder_SNR... Generating docs for nested compound pwiz::analysis::PeakFinder_SNR::Config... Generating docs for compound pwiz::analysis::PeakFitter... Generating docs for compound pwiz::analysis::PeakFitter_Parabola... Generating docs for nested compound pwiz::analysis::PeakFitter_Parabola::Config... Generating docs for compound pwiz::analysis::PepxmlRecordReader... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::Config... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::record... Generating docs for compound pwiz::analysis::PrecursorMaskCodec... Generating docs for nested compound pwiz::analysis::PrecursorMaskCodec::DemuxBoundary... Generating docs for compound pwiz::analysis::PrecursorMassFilter... Generating docs for nested compound pwiz::analysis::PrecursorMassFilter::Config... Generating docs for compound pwiz::analysis::PrecursorRecalculator... Generating docs for nested compound pwiz::analysis::PrecursorRecalculator::PrecursorInfo... Generating docs for compound pwiz::analysis::PrecursorRecalculatorDefault... Generating docs for nested compound pwiz::analysis::PrecursorRecalculatorDefault::Config... Generating docs for compound pwiz::analysis::ProteinList_DecoyGenerator... Generating docs for nested compound pwiz::analysis::ProteinList_DecoyGenerator::Predicate... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled... Generating docs for compound pwiz::analysis::ProteinList_Filter... Generating docs for nested compound pwiz::analysis::ProteinList_Filter::Predicate... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ProteinListFactory... Generating docs for compound pwiz::analysis::RegionAnalyzer... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Config... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::SpectrumStats... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Stats... Generating docs for compound pwiz::analysis::RegionSIC... Generating docs for nested compound pwiz::analysis::RegionSIC::Config... Generating docs for compound pwiz::analysis::RegionSlice... Generating docs for nested compound pwiz::analysis::RegionSlice::Config... Generating docs for compound pwiz::analysis::RegionTIC... Generating docs for nested compound pwiz::analysis::RegionTIC::Config... Generating docs for compound pwiz::analysis::RTMatches_Any... Generating docs for compound pwiz::analysis::RTMatches_Contains... Generating docs for compound pwiz::analysis::RTMatches_IsContainedIn... Generating docs for compound pwiz::analysis::RunSummary... Generating docs for nested compound pwiz::analysis::RunSummary::Config... Generating docs for compound pwiz::analysis::SavitzkyGolaySmoother... Generating docs for compound pwiz::analysis::Smoother... Generating docs for compound pwiz::analysis::SpectrumBinaryData... Generating docs for nested compound pwiz::analysis::SpectrumBinaryData::Config... Generating docs for compound pwiz::analysis::SpectrumDataFilter... Generating docs for compound pwiz::analysis::SpectrumList_3D... Generating docs for compound pwiz::analysis::SpectrumList_ChargeFromIsotope... Generating docs for compound pwiz::analysis::SpectrumList_ChargeStateCalculator... Generating docs for compound pwiz::analysis::SpectrumList_Demux... Generating docs for nested compound pwiz::analysis::SpectrumList_Demux::Params... Generating docs for compound pwiz::analysis::SpectrumList_Filter... Generating docs for nested compound pwiz::analysis::SpectrumList_Filter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ActivationType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MzPresent... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_Polarity... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter... Generating docs for compound pwiz::analysis::SpectrumList_IonMobility... Generating docs for compound pwiz::analysis::SpectrumList_LockmassRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MetadataFixer... Generating docs for compound pwiz::analysis::SpectrumList_MZRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MZWindow... Generating docs for compound pwiz::analysis::SpectrumList_PeakFilter... Generating docs for compound pwiz::analysis::SpectrumList_PeakPicker... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRecalculator... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRefine... Generating docs for nested compound pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo... Generating docs for compound pwiz::analysis::SpectrumList/<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:37: warning: argument 'ppmError' of command @param is not found in the argument list of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) /<>/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:42: warning: The following parameters of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) are not documented: parameter 'massError' /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:43: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:61: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:62: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:63: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /<>/pwiz/data/common/diff_std.hpp:125: warning: expected whitespace after . command _ScanSummer... Generating docs for compound pwiz::analysis::SpectrumList_Smoother... Generating docs for compound pwiz::analysis::SpectrumList_Sorter... Generating docs for nested compound pwiz::analysis::SpectrumList_Sorter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_SorterPredicate_ScanStartTime... Generating docs for compound pwiz::analysis::SpectrumList_TitleMaker... Generating docs for compound pwiz::analysis::SpectrumList_ZeroSamplesFilter... Generating docs for compound pwiz::analysis::SpectrumListFactory... Generating docs for compound pwiz::analysis::SpectrumPeakExtractor... Generating docs for compound pwiz::analysis::SpectrumTable... Generating docs for nested compound pwiz::analysis::SpectrumTable::Config... Generating docs for compound pwiz::analysis::TabularConfig... Generating docs for compound pwiz::analysis::ThresholdFilter... Generating docs for compound pwiz::analysis::Version... Generating docs for compound pwiz::analysis::WhittakerSmoother... Generating docs for compound pwiz::analysis::ZeroSampleFiller... Generating docs for namespace pwiz::chemistry Generating docs for compound pwiz::chemistry::Formula... Generating docs for compound pwiz::chemistry::IsotopeCalculator... Generating docs for compound pwiz::chemistry::IsotopeEnvelopeEstimator... Generating docs for nested compound pwiz::chemistry::IsotopeEnvelopeEstimator::Config... Generating docs for compound pwiz::chemistry::IsotopeTable... Generating docs for compound pwiz::chemistry::MassAbundance... Generating docs for compound pwiz::chemistry::MZTolerance... Generating docs for namespace pwiz::chemistry::detail Generating docs for compound pwiz::chemistry::detail::Element... Generating docs for compound pwiz::chemistry::detail::Isotope... Generating docs for namespace pwiz::chemistry::Element Generating docs for namespace pwiz::chemistry::Element::Info Generating docs for compound pwiz::chemistry::Element::Info::Record... Generating docs for namespace pwiz::chemistry::Ion Generating docs for namespace pwiz::cv Generating docs for compound pwiz::cv::CV... Generating docs for compound pwiz::cv::CVTermInfo... Generating docs for namespace pwiz::data Generating docs for compound pwiz::data::BaseDiffConfig... Generating docs for compound pwiz::data::BinaryIndexStream... Generating docs for compound pwiz::data::CalibrationParameters... Generating docs for compound pwiz::data::CVParam... Generating docs for compound pwiz::data::CVParamIs... Generating docs for compound pwiz::data::CVParamIsChildOf... Generating docs for compound pwiz::data::CVTranslator... Generating docs for compound pwiz::data::Diff... Generating docs for compound pwiz::data::FrequencyData... Generating docs for compound pwiz::data::Index... Generating docs for nested compound pwiz::data::Index::Entry... Generating docs for compound pwiz::data::MemoryIndex... Generating docs for compound pwiz::data::OBO... Generating docs for compound pwiz::data::ParamContainer... Generating docs for compound pwiz::data::ParamGroup... Generating docs for compound pwiz::data::SampleDatum... Generating docs for compound pwiz::data::Term... Generating docs for compound pwiz::data::UserParam... Generating docs for namespace pwiz::data::diff_impl Generating docs for compound pwiz::data::diff_impl::HasID... Generating docs for compound pwiz::data::diff_impl::Same... Generating docs for compound pwiz::data::diff_impl::SameDeep... Generating docs for namespace pwiz::data::peakdata Generating docs for compound pwiz::data::peakdata::Feature... Generating docs for compound pwiz::data::peakdata::FeatureFile... Generating docs for compound pwiz::data::peakdata::HandlerFeature... Generating docs for compound pwiz::data::peakdata::HandlerPeak... Generating docs for compound pwiz::data::peakdata::HandlerPeakel... Generating docs for compound pwiz::data::peakdata::Peak... Generating docs for compound pwiz::data::peakdata::PeakData... Generating docs for compound pwiz::data::peakdata::Peakel... Generating docs for compound pwiz::data::peakdata::PeakFamily... Generating docs for compound p/<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' wiz::data::peakdata::Scan... Generating docs for compound pwiz::data::peakdata::Software... Generating docs for nested compound pwiz::data::peakdata::Software::Parameter... Generating docs for namespace pwiz::data::pepxml Generating docs for compound pwiz::data::pepxml::AlternativeProtein... Generating docs for compound pwiz::data::pepxml::AminoAcidModification... Generating docs for compound pwiz::data::pepxml::AnalysisResult... Generating docs for compound pwiz::data::pepxml::AnalysisSummary... Generating docs for compound pwiz::data::pepxml::AnalysisTimestamp... Generating docs for compound pwiz::data::pepxml::DataFilter... Generating docs for compound pwiz::data::pepxml::DatasetDerivation... Generating docs for compound pwiz::data::pepxml::DistributionPoint... Generating docs for compound pwiz::data::pepxml::EnzymaticSearchConstraint... Generating docs for compound pwiz::data::pepxml::ErrorPoint... Generating docs for compound pwiz::data::pepxml::Match... Generating docs for compound pwiz::data::pepxml::MatchData... Generating docs for compound pwiz::data::pepxml::MixtureModel... Generating docs for compound pwiz::data::pepxml::ModAminoAcidMass... Generating docs for compound pwiz::data::pepxml::ModificationInfo... Generating docs for compound pwiz::data::pepxml::MSMSPipelineAnalysis... Generating docs for compound pwiz::data::pepxml::MSMSRunSummary... Generating docs for compound pwiz::data::pepxml::Parameter... Generating docs for compound pwiz::data::pepxml::PeptideProphetResult... Generating docs for compound pwiz::data::pepxml::PeptideProphetSummary... Generating docs for compound pwiz::data::pepxml::Q3RatioResult... Generating docs for compound pwiz::data::pepxml::RocDataPoint... Generating docs for compound pwiz::data::pepxml::SampleEnzyme... Generating docs for compound pwiz::data::pepxml::SearchDatabase... Generating docs for compound pwiz::data::pepxml::SearchHit... Generating docs for compound pwiz::data::pepxml::SearchResult... Generating docs for compound pwiz::data::pepxml::SearchScore... Generating docs for compound pwiz::data::pepxml::SearchSummary... Generating docs for compound pwiz::data::pepxml::Specificity... Generating docs for compound pwiz::data::pepxml::SpectrumQuery... Generating docs for namespace pwiz::data::SampleDatumConstant Generating docs for namespace pwiz::data::unimod Generating docs for namespace pwiz::frequency Generating docs for compound pwiz::frequency::FrequencyEstimator... Generating docs for compound pwiz::frequency::FrequencyEstimatorPhysicalModel... Generating docs for nested compound pwiz::frequency::FrequencyEstimatorPhysicalModel::Config... Generating docs for compound pwiz::frequency::FrequencyEstimatorSimple... Generating docs for compound pwiz::frequency::MagnitudeLorentzian... Generating docs for compound pwiz::frequency::ParameterEstimator... Generating docs for compound pwiz::frequency::ParametrizedFunction... Generating docs for nested compound pwiz::frequency::ParametrizedFunction::ErrorFunction... Generating docs for compound pwiz::frequency::PeakDetector... Generating docs for compound pwiz::frequency::PeakDetectorMatchedFilter... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Config... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Score... Generating docs for compound pwiz::frequency::PeakDetectorNaive... Generating docs for compound pwiz::frequency::TruncatedLorentzian... Generating docs for compound pwiz::frequency::TruncatedLorentzianEstimator... Generating docs for compound pwiz::frequency::TruncatedLorentzianParameters... Generating docs for namespace pwiz::frequency::DerivativeTest Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorDerivative... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice... Generating docs for compound pwiz::frequency::DerivativeTest::VectorFunction... Generating docs for namespace pwiz::identdata Generating docs for compound pwiz::identdata::AmbiguousResidue... Generating docs for compound pwiz::identdata::AnalysisCollection... Generating docs for compound pwiz::identdata::AnalysisData... Generating docs for compound pwiz::identdata::AnalysisProtocolCollection... Generating docs for compound pwiz::identdata::AnalysisSampleCollection... Generating docs for compound pwiz::identdata::AnalysisSoftware... Generating docs for compound pwiz::identdata::BibliographicReference... Generating docs for compound pwiz::identdata::Contact... Generating docs for compound pwiz::identdata::ContactRole... Generating docs for compound pwiz::identdata::CVIDMatchCVMap... Generating docs for compound pwiz::identdata::CVMap... Generating docs for compound pwiz::identdata::DatabaseTranslation... Generating docs for compound pwiz::identdata::DataCollection... Generating docs for compound pwiz::identdata::DBSequence... Generating docs for compound pwiz::identdata::dbsequence_p... Generating docs for compound pwiz::identdata::DefaultReaderList... Generating docs for compound pwiz::identdata::DelimReader... Generating docs for compound pwiz::identdata::DelimWriter... Generating docs for compound pwiz::identdata::DiffConfig... Generating docs for compound pwiz::identdata::Enzyme... Generating docs for compound pwiz::identdata::Enzymes... Generating docs for compound pwiz::identdata::Filter... Generating docs for compound pwiz::identdata::FragmentArray... Generating docs for compound pwiz::identdata::id_p... Generating docs for compound pwiz::identdata::IdentData... Generating docs for compound pwiz::identdata::IdentDataFile... Generating docs for nested compound pwiz::identdata::IdentDataFile::WriteConfig... Generating docs for compound pwiz::identdata::Identifiable... Generating docs for compound pwiz::identdata::IdentifiableParamContainer... Generating docs for compound pwiz::identdata::Inputs... Generating docs for compound pwiz::identdata::IonType... Generating docs for compound pwiz::identdata::MascotReader... Generating docs for compound pwiz::identdata::MassTable... Generating docs for compound pwiz::identdata::Measure... Generating docs for compound pwiz::identdata::Modification... Generating docs for compound pwiz::identdata::Organization... Generating docs for compound pwiz::identdata::organization_p... Generating docs for compound pwiz::identdata::Pep2MzIdent... Generating docs for compound pwiz::identdata::Peptide... Generating docs for compound pwiz::identdata::PeptideEvidence... Generating docs for compound pwiz::identdata::PeptideHypothesis... Generating docs for compound pwiz::identdata::PepXMLSpecificity... Generating docs for compound pwiz::identdata::Person... Generating docs for compound pwiz::identdata::person_p... Generating docs for compound pwiz::identdata::ProteinAmbiguityGroup... Generating docs for compound pwiz::identdata::ProteinDetection... Generating docs for compound pwiz::identdata::ProteinDetectionHypothesis... Generating docs for compound pwiz::identdata::ProteinDetectionList... Generating docs for compound pwiz::identdata::ProteinDetectionProtocol... Generating docs for compound pwiz::identdata::Provider... Generating docs for compound pwiz::identdata::Reader... Generating docs for nested compound pwiz::identdata::Reader::Config... Generating docs for compound pwiz::identdata::ReaderFail... Generating docs for compound pwiz::identdata::ReaderList... Generating docs for compound pwiz::identdata::RegexCVMap... Generating docs for compound pwiz::identdata::Residue... Generating docs for compound pwiz::identdata::Sample... Generating docs for compound pwiz::identdata::SearchDatabase... Generating docs for compound pwiz::identdata::SearchModification... Generating docs for compound pwiz::identdata::seq_p... Generating docs for compound pwiz::identdata::sequence_p... Generating docs for compound pwiz::identdata::SequenceCollection... Generating docs for compound pwiz::identdata::Serializer_mzIdentML... Generating docs for nested compound pwiz::identdata::Serializer_mzIdentML::Config... Generating docs for compound pwiz::identdata::Serializer_pepXML... Generating docs for nested compound pwiz::identdata::Serializer_pepXML::Config... Generating docs for compound pwiz::identdata::Serializer_protXML... Generating docs for nested compound pwiz::identdata::Serializer_protXML::Config... Generating docs for compound pwiz::identdata::Serializer_Text... Generating docs for nested compound pwiz::identdata::Serializer_Text::Config... Generating docs for compound pwiz::identdata::software_p... Generating docs for compound pwiz::identdata::SourceFile... Generating docs for compound pwiz::identdata::SpectraData... Generating docs for compound pwiz::identdata::SpectrumIdentification... Generating docs for compound pwiz::identdata::SpectrumIdentificationItem... Generating docs for compound pwiz::identdata::SpectrumIdentificationList... Generating docs for compound pwiz::identdata::SpectrumIdentificationProtocol... Generating docs for compound pwiz::identdata::SpectrumIdentificationResult... Generating docs for compound pwiz::identdata::StringMatchCVMap... Generating docs for compound pwiz::identdata::SubstitutionModification... Generating docs for compound pwiz::identdata::TextWriter... Generating docs for compound pwiz::identdata::TranslationTable... Generating docs for compound pwiz::identdata::Version... Generating docs for namespace pwiz::identdata::examples Generating docs for namespace pwiz::identdata::IO Generating docs for namespace pwiz::identdata::References Generating docs for namespace pwiz::math Generating docs for compound pwiz::math::LinearLeastSquares... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_LU >... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_QR >... Generating docs for compound pwiz::math::LinearSolver... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_LU >... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_QR >... Generating docs for compound pwiz::math::OrderedPair... Generating docs for compound pwiz::math::OrderedPairContainerRef... Generating docs for compound pwiz::math::Parabola... Generating docs for compound pwiz::math::Stats... Generating docs for namespace pwiz::math::MatchedFilter Generating docs for compound pwiz::math::MatchedFilter::Correlation... Generating docs for compound pwiz::math::MatchedFilter::KernelTraits... Generating docs for nested compound pwiz::math::MatchedFilter::KernelTraits::Dummy... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase< Y(*)(X)>... Generating docs for compound pwiz::math::MatchedFilter::ProductSpace... Generating docs for compound pwiz::math::MatchedFilter::SampledData... Generating docs for namespace pwiz::math::MatchedFilter::details Generating docs for namespace pwiz::math::types Generating docs for namespace pwiz::minimxml Generating docs for compound pwiz::minimxml::basic_charcounter... Generating docs for nested compound pwiz::minimxml::basic_charcounter::category... Generating docs for compound pwiz::minimxml::XMLWriter... Generating docs for nested compound pwiz::minimxml::XMLWriter::Attributes... Generating docs for nested compound pwiz::minimxml::XMLWriter::Config... Generating docs for nested compound pwiz::minimxml::XMLWriter::OutputObserver... Generating docs for namespace pwiz::minimxml::SAXParser Generating docs for compound pwiz::minimxml::SAXParser::Handler... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes::attribute... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Status... Generating docs for compound pwiz::minimxml::SAXParser::saxstring... Generating docs for namespace pwiz::msdata Generating docs for compound pwiz::msdata::Activation... Generating docs for compound pwiz::msdata::BinaryDataArray... Generating docs for/<>/pwiz/data/msdata/LegacyAdapter.hpp:48: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/LegacyAdapter.hpp:91: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:854: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:854: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/MSData.hpp:854: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /<>/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found compound pwiz::msdata::BinaryDataEncoder... Generating docs for nested compound pwiz::msdata::BinaryDataEncoder::Config... Generating docs for compound pwiz::msdata::Chromatogram... Generating docs for compound pwiz::msdata::ChromatogramIdentity... Generating docs for compound pwiz::msdata::ChromatogramList... Generating docs for compound pwiz::msdata::ChromatogramList_mzML... Generating docs for compound pwiz::msdata::ChromatogramListBase... Generating docs for compound pwiz::msdata::ChromatogramListSimple... Generating docs for compound pwiz::msdata::Component... Generating docs for compound pwiz::msdata::ComponentList... Generating docs for compound pwiz::msdata::Contact... Generating docs for compound pwiz::msdata::DataProcessing... Generating docs for compound pwiz::msdata::DefaultReaderList... Generating docs for compound pwiz::msdata::DiffConfig... Generating docs for compound pwiz::msdata::ExtendedReaderList... Generating docs for compound pwiz::msdata::FileContent... Generating docs for compound pwiz::msdata::FileDescription... Generating docs for compound pwiz::msdata::Index_mzML... Generating docs for compound pwiz::msdata::IndexList... Generating docs for compound pwiz::msdata::InstrumentConfiguration... Generating docs for compound pwiz::msdata::IsolationWindow... Generating docs for compound pwiz::msdata::LegacyAdapter_Instrument... Generating docs for compound pwiz::msdata::LegacyAdapter_Software... Generating docs for compound pwiz::msdata::MemoryMRUCache... Generating docs for compound pwiz::msdata::MSData... Generating docs for compound pwiz::msdata::MSDataFile... Generating docs for nested compound pwiz::msdata::MSDataFile::WriteConfig... Generating docs for compound pwiz::msdata::MSDataMerger... Generating docs for compound pwiz::msdata::MSnHeader... Generating docs for compound pwiz::msdata::MZIntensityPair... Generating docs for compound pwiz::msdata::Precursor... Generating docs for compound pwiz::msdata::ProcessingMethod... Generating docs for compound pwiz::msdata::Product... Generating docs for compound pwiz::msdata::Reader... Generating docs for nested compound pwiz::msdata::Reader::Config... Generating docs for compound pwiz::msdata::Reader_ABI... Generating docs for compound pwiz::msdata::Reader_ABI_T2D... Generating docs for compound pwiz::msdata::Reader_Agilent... Generating docs for compound pwiz::msdata::Reader_Bruker... Generating docs for compound pwiz::msdata::Reader_BTDX... Generating docs for compound pwiz::msdata::Reader_MGF... Generating docs for compound pwiz::msdata::Reader_MSn... Generating docs for compound pwiz::msdata::Reader_mz5... Generating docs for compound pwiz::msdata::Reader_mzML... Generating docs for compound pwiz::msdata::Reader_mzXML... Generating docs for compound pwiz::msdata::Reader_Shimadzu... Generating docs for compound pwiz::msdata::Reader_Thermo... Generating docs for compound pwiz::msdata::Reader_UIMF... Generating docs for compound pwiz::msdata::Reader_Waters... Generating docs for compound pwiz::msdata::ReaderFail... Generating docs for compound pwiz::msdata::ReaderList... Generating docs for compound pwiz::msdata::Run... Generating docs for compound pwiz::msdata::Sample... Generating docs for compound pwiz::msdata::Scan... Generating docs for compound pwiz::msdata::ScanList... Generating docs for compound pwiz::msdata::ScanSettings... Generating docs for compound pwiz::msdata::ScanWindow... Generating docs for compound pwiz::msdata::SelectedIon... Generating docs for compound pwiz::msdata::Serializer_MGF... Generating docs for compound pwiz::msdata::Serializer_MSn... Generating docs for compound pwiz::msdata::Serializer_mzML... Generating docs for nested compound pwiz::msdata::Serializer_mzML::Config... Generating docs for compound pwiz::msdata::Serializer_mzXML... Generating docs for nested compound pwiz::msdata::Serializer_mzXML::Config... Generating docs for compound pwiz::msdata::SHA1OutputObserver... Generating docs for compound pwiz::msdata::Software... Generating docs for compound pwiz::msdata::SourceFile... Generating docs for compound pwiz::ms/<>/pwiz/data/msdata/MSNumpress.hpp:73: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:74: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:76: warning: Found unknown command `\fixedPoint' /<>/pwiz/data/msdata/MSNumpress.hpp:89: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:110: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:111: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:121: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:139: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:140: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:151: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:163: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:164: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:175: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:202: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:203: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:216: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:227: warning: Found unknown command `\data' /<>/pwiz/data/msdata/MSNumpress.hpp:228: warning: Found unknown command `\dataSize' /<>/pwiz/data/msdata/MSNumpress.hpp:240: warning: Found unknown command `\data' data::Spectrum... Generating docs for compound pwiz::msdata::SpectrumIdentity... Generating docs for compound pwiz::msdata::SpectrumIdentityFromMzXML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromXML... Generating docs for compound pwiz::msdata::SpectrumInfo... Generating docs for nested compound pwiz::msdata::SpectrumInfo::PrecursorInfo... Generating docs for compound pwiz::msdata::SpectrumIterator... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Config... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Sieve... Generating docs for compound pwiz::msdata::SpectrumList... Generating docs for compound pwiz::msdata::SpectrumList_BTDX... Generating docs for compound pwiz::msdata::SpectrumList_MGF... Generating docs for compound pwiz::msdata::SpectrumList_MSn... Generating docs for compound pwiz::msdata::SpectrumList_mzML... Generating docs for compound pwiz::msdata::SpectrumList_mzXML... Generating docs for nested compound pwiz::msdata::SpectrumList_mzXML::index_not_found... Generating docs for compound pwiz::msdata::SpectrumListBase... Generating docs for compound pwiz::msdata::SpectrumListCache... Generating docs for nested compound pwiz::msdata::SpectrumListCache::CacheEntry... Generating docs for compound pwiz::msdata::SpectrumListSimple... Generating docs for compound pwiz::msdata::SpectrumListWrapper... Generating docs for compound pwiz::msdata::SpectrumWorkerThreads... Generating docs for compound pwiz::msdata::Target... Generating docs for compound pwiz::msdata::TextWriter... Generating docs for compound pwiz::msdata::TimeIntensityPair... Generating docs for compound pwiz::msdata::Version... Generating docs for namespace pwiz::msdata::detail Generating docs for compound pwiz::msdata::detail::ChromatogramList_ABI... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Agilent... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Bruker... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Shimadzu... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Thermo... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Waters... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI_T2D... Generating docs for compound pwiz::msdata::detail::SpectrumList_Agilent... Generating docs for compound pwiz::msdata::detail::SpectrumList_Bruker... Generating docs for compound pwiz::msdata::detail::SpectrumList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_UIMF... Generating docs for compound pwiz::msdata::detail::SpectrumList_Waters... Generating docs for namespace pwiz::msdata::detail::Bruker Generating docs for namespace pwiz::msdata::detail::Thermo Generating docs for namespace pwiz::msdata::examples Generating docs for namespace pwiz::msdata::id Generating docs for namespace pwiz::msdata::IO Generating docs for namespace pwiz::msdata::MSNumpress Generating docs for namespace pwiz::msdata::References Generating docs for namespace pwiz::peptideid Generating docs for compound pwiz::peptideid::FlatRecordBuilder... Generating docs for compound pwiz::peptideid::location_less... Generating docs for compound pwiz::peptideid::MSInspectRecordBuilder... Generating docs for compound pwiz::peptideid::nativeID_less... Generating docs for compound pwiz::peptideid::PeptideID... Generating docs for nested compound pwiz::peptideid::PeptideID::Iterator... Generating docs for nested compound pwiz::peptideid::PeptideID::IteratorInternal... Generating docs for nested compound pwiz::peptideid::PeptideID::Location... Generating docs for nested compound pwiz::peptideid::PeptideID::Record... Generating docs for compound pwiz::peptideid::PeptideID_flat... Generating docs for compound pwiz::peptideid::PeptideID_pepXml... Generating docs for compound pwiz::peptideid::PeptideIDMap... Generating docs for namespace pwiz::proteome Generating docs for compound pwiz::proteome::DefaultReaderList... Generating docs for/<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /<>/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /<>/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found compound pwiz::proteome::DiffConfig... Generating docs for compound pwiz::proteome::DigestedPeptide... Generating docs for compound pwiz::proteome::Digestion... Generating docs for nested compound pwiz::proteome::Digestion::Config... Generating docs for nested compound pwiz::proteome::Digestion::const_iterator... Generating docs for compound pwiz::proteome::Fragmentation... Generating docs for compound pwiz::proteome::IndexList... Generating docs for compound pwiz::proteome::IPIFASTADatabase... Generating docs for nested compound pwiz::proteome::IPIFASTADatabase::Record... Generating docs for compound pwiz::proteome::Modification... Generating docs for compound pwiz::proteome::ModificationList... Generating docs for compound pwiz::proteome::ModificationMap... Generating docs for compound pwiz::proteome::Peptide... Generating docs for compound pwiz::proteome::Protein... Generating docs for compound pwiz::proteome::ProteinList... Generating docs for compound pwiz::proteome::ProteinListCache... Generating docs for compound pwiz::proteome::ProteinListSimple... Generating docs for compound pwiz::proteome::ProteinListWrapper... Generating docs for compound pwiz::proteome::ProteomeData... Generating docs for compound pwiz::proteome::ProteomeDataFile... Generating docs for nested compound pwiz::proteome::ProteomeDataFile::WriteConfig... Generating docs for compound pwiz::proteome::Reader... Generating docs for compound pwiz::proteome::Reader_FASTA... Generating docs for nested compound pwiz::proteome::Reader_FASTA::Config... Generating docs for compound pwiz::proteome::ReaderFail... Generating docs for compound pwiz::proteome::ReaderList... Generating docs for compound pwiz::proteome::Serializer_FASTA... Generating docs for nested compound pwiz::proteome::Serializer_FASTA::Config... Generating docs for compound pwiz::proteome::TextWriter... Generating docs for compound pwiz::proteome::Version... Generating docs for namespace pwiz::proteome::AminoAcid Generating docs for namespace pwiz::proteome::AminoAcid::Info Generating docs for compound pwiz::proteome::AminoAcid::Info::Record... Generating docs for namespace pwiz::proteome::examples Generating docs for namespace pwiz::tradata Generating docs for compound pwiz::tradata::Compound... Generating docs for compound pwiz::tradata::Configuration... Generating docs for compound pwiz::tradata::Contact... Generating docs for compound pwiz::tradata::DefaultReaderList... Generating docs for compound pwiz::tradata::DiffConfig... Generating docs for compound pwiz::tradata::Evidence... Generating docs for compound pwiz::tradata::Instrument... Generating docs for compound pwiz::tradata::Interpretation... Generating docs for compound pwiz::tradata::Modification... Generating docs for compound pwiz::tradata::Peptide... Generating docs for compound pwiz::tradata::Precursor... Generating docs for compound pwiz::tradata::Prediction... Generating docs for compound pwiz::tradata::Product... Generating docs for compound pwiz::tradata::Protein... Generating docs for compound pwiz::tradata::Publication... Generating docs for compound pwiz::tradata::Reader... Generating docs for compound pwiz::tradata::ReaderFail... Generating docs for compound pwiz::tradata::ReaderList... Generating docs for compound pwiz::tradata::RetentionTime... Generating docs for compound pwiz::tradata::Serializer_traML... Generating docs for compound pwiz::tradata::Software... Generating docs for compound pwiz::tradata::Target... Generating docs for compound pwiz::tradata::TargetList... Generating docs for compound pwiz::tradata::TextWriter... Generating docs for compound pwiz::tradata::TraData... Generating docs for compound pwiz::tradata::TraDataFile... Generating docs for nested compound pwiz::tradata::TraDataFile::WriteConfig... Generating docs for compound pwiz::tradata::Transition... Generating docs for compound pwiz::tradata::Validation... Generating docs for compound pwiz::tradata::Version... Generating docs for namespace pwiz::tradata::examples Generating docs for namespace pwiz::tradata::IO Generating docs for namespac/<>/pwiz/utility/findmf/base/base/cumsum.hpp:40: warning: The following parameters of ralab::base::cumsum(TIterator beg, TIterator end, std::vector< T > &res) are not documented: parameter 'end' /<>/pwiz/utility/findmf/base/base/cumsum.hpp:63: warning: The following parameters of ralab::base::cumsum(TIterator beg, TIterator end) are not documented: parameter 'end' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:58: warning: The following parameters of ralab::base::base::interpolate_linear(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:83: warning: The following parameters of ralab::base::base::interpolate_cosine(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:105: warning: The following parameters of ralab::base::base::interpolate_cubic(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/interpolate.hpp:130: warning: The following parameters of ralab::base::base::interpolate_Hermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, double tension=0, double bias=0, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:199: warning: The following parameters of ralab::base::base::utilities::interpolateCubicHermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, TFunctor &functor, int start_index=0) are not documented: parameter 'begY' parameter 'endY' parameter 'begX' parameter 'endX' parameter 'start_index' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:283: warning: The following parameters of ralab::base::base::utilities::interpolateLinearCosine(YInputIterator y_p, YInputIterator endY, XInputIterator x_p, XInputIterator endX, OutputIterator out_p, TFunctor &interpolator, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /<>/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:149: warning: The following parameters of ralab::base::base::utilities::HermiteInterpolate::HermiteInterpolate(TReal tension, TReal bias, TReal epsilon=std::numeric_limits< TReal >::epsilon()) are not documented: parameter 'epsilon' /<>/pwiz/utility/findmf/base/filter/filter.hpp:49: warning: The following parameters of ralab::base::filter::filter_sequence(TIterator dataBeg, TIterator dataEnd, TFilterIterator filterBeg, size_t fsize, TOutputIterator resBeg, bool circular=false, uint32_t sides=2) are not documented: parameter 'dataEnd' parameter 'fsize' /<>/pwiz/utility/findmf/base/filter/gaussfilter.hpp:102: warning: The following parameters of ralab::base::filter::getGaussian1DerFilterQuantile(std::vector< TReal > &gauss1d, TReal fwhm=20, TReal quantile=0.1) are not documented: parameter 'quantile' /<>/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp:39: warning: The following parameters of ralab::base::filter::utilities::prepareData(TIterator dataBeg, TIterator dataEnd, size_t fsize, TContainer &res, bool mirror=false) are not documented: parameter 'dataBeg' parameter 'dataEnd' parameter 'fsize' /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:81: warning: The following parameters of ralab::base::ms::LocalMinPeakArea::LocalMinPeakArea(TReal integwith, TReal threshold=.1) are not documented: parameter 'threshold' /<>/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:177: warning: The following parameters of ralab::base::ms::PeakPicker::PeakPicker(TReal resolution, std::pair< TReal, TReal > &massrange, TReal width=2., TReal intwidth=2., TReal intensitythreshold=10., bool area=true, uint32_t maxnumberofpeaks=0, double c2d=1e-5) are not documented: parameter 'intensitythreshold' /<>/pwiz/utility/findmf/base/ms/simplepicker.hpp:49: warning: The following parameters of ralab::base::ms::SimplePicker::operator()(Tit beg, Tit end, Outit zerocrossings, size_t nzercross, std::ptrdiff_t lag=2) are not documented: parameter 'beg' parameter 'end' parameter 'zerocrossings' parameter 'lag' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:36: warning: Found unknown command `\given' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:83: warning: Found unknown command `\Assignment' /<>/pwiz/utility/findmf/base/resample/bucket1d.hpp:96: warning: The following parameters of ralab::base::resample::Bucket1D::operator()(InputIterator beg, InputIterator end, std::vector< std::pair< std::size_t, std::size_t > > &bucketPairs) are not documented: parameter 'end' parameter 'bucketPairs' e pwiz::tradata::References Generating docs for namespace pwiz::util Generating docs for compound pwiz::util::CharIndexedVector... Generating docs for compound pwiz::util::CharIndexedVectorConstIterator... Generating docs for compound pwiz::util::CharIndexedVectorIterator... Generating docs for compound pwiz::util::ClickwrapPrompter... Generating docs for compound pwiz::util::DefaultTabHandler... Generating docs for compound pwiz::util::Image... Generating docs for nested compound pwiz::util::Image::Color... Generating docs for nested compound pwiz::util::Image::Point... Generating docs for compound pwiz::util::IntegerSet... Generating docs for nested compound pwiz::util::IntegerSet::Interval... Generating docs for nested compound pwiz::util::IntegerSet::Iterator... Generating docs for compound pwiz::util::IterationListener... Generating docs for nested compound pwiz::util::IterationListener::UpdateMessage... Generating docs for compound pwiz::util::IterationListenerRegistry... Generating docs for compound pwiz::util::mru_list... Generating docs for compound pwiz::util::MSIHandler... Generating docs for nested compound pwiz::util::MSIHandler::Record... Generating docs for compound pwiz::util::once_flag_proxy... Generating docs for compound pwiz::util::random_access_compressed_ifstream... Generating docs for compound pwiz::util::SHA1_ostream... Generating docs for compound pwiz::util::SHA1Calculator... Generating docs for compound pwiz::util::SHA1Filter... Generating docs for compound pwiz::util::SHA1SymmetricFilter... Generating docs for compound pwiz::util::shared_map... Generating docs for compound pwiz::util::TabHandler... Generating docs for compound pwiz::util::TabReader... Generating docs for compound pwiz::util::TestPathPredicate... Generating docs for compound pwiz::util::Timer... Generating docs for compound pwiz::util::usage_exception... Generating docs for compound pwiz::util::user_error... Generating docs for compound pwiz::util::VectorTabHandler... Generating docs for compound pwiz::util::virtual_map... Generating docs for namespace pwiz::util::Base64 Generating docs for namespace pwiz::util::env Generating docs for namespace pwiz::vendor_api Generating docs for namespace pwiz::vendor_api::Bruker Generating docs for namespace ralab Generating docs for namespace ralab::base Generating docs for namespace ralab::base::base Generating docs for namespace ralab::base::base::utilities Generating docs for compound ralab::base::base::utilities::CosineInterpolate... Generating docs for compound ralab::base::base::utilities::CubicInterpolate... Generating docs for compound ralab::base::base::utilities::HermiteInterpolate... Generating docs for compound ralab::base::base::utilities::LinearInterpolate... Generating docs for compound ralab::base::base::utilities::SeqMinus... Generating docs for compound ralab::base::base::utilities::SeqPlus... Generating docs for namespace ralab::base::filter Generating docs for namespace ralab::base::filter::utilities Generating docs for compound ralab::base::filter::utilities::Gauss... Generating docs for compound ralab::base::filter::utilities::Gauss_1deriv... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat2... Generating docs for namespace ralab::base::ms Generating docs for compound ralab::base::ms::LocalMinPeakArea... Generating docs for compound ralab::base::ms::PeakPicker... Generating docs for compound ralab::base::ms::SimplePeakArea... Generating docs for compound ralab::base::ms::SimplePicker... Generating docs for namespace ralab::base::resample Generating docs for compound ralab::base::resample::Bin1D... Generating docs for compound ralab::base::resample::Bucket1D... Generating docs for compound ralab::base::resample::Convert2Dense... Generating docs for compound ralab::base::resample::DaCompFunctor... Generating docs for compound ralab::base::resample::FTMSCompFunctor... Generating docs for compound ralab::base::resample::PPMCompFunctor... Generating docs for compound ralab::/<>/pwiz/utility/findmf/base/base/scale.hpp:77: warning: The following parameters of ralab::base::stats::scale(InputIterator begin, InputIterator end, std::pair< typename std::iterator_traits< InputIterator >::value_type, typename std::iterator_traits< InputIterator >::value_type > &scaled, bool center=true, bool scale=true) are not documented: parameter 'begin' parameter 'end' sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: 1: dvips: not found error: Problems running dvips. Check your installation! /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' /<>/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command `\time' /<>/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command `\id' base::resample::SamplingWith... Generating docs for compound ralab::base::resample::SquareRoot... Generating docs for namespace ralab::base::resample::utilities Generating docs for compound ralab::base::resample::utilities::meanfunctor... Generating docs for namespace ralab::base::stats Generating docs for compound ralab::base::stats::NthPower... Generating docs for namespace ralab::base::utils Generating docs for namespace ralab::constants Generating graph info page... Generating directory documentation... Generating bitmaps for formulas in HTML... Generating image form_0.png for formula Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 35970/65536 hits=349949 misses=38256 finished... rm -f doc/dox/html/jquery.js touch build-indep-stamp dh_testdir -i dh_testroot -i dh_installchangelogs -i install -d debian/libpwiz-doc/usr/share/doc/libpwiz-doc install -p -m0644 debian/changelog debian/libpwiz-doc/usr/share/doc/libpwiz-doc/changelog.Debian dh_installdocs -i install -p -m0644 debian/copyright debian/libpwiz-doc/usr/share/doc/libpwiz-doc/copyright install -d debian/libpwiz-doc/usr/share/doc-base/ install -p -m0644 debian/libpwiz-doc.doc-base debian/libpwiz-doc/usr/share/doc-base/libpwiz-documentation dh_install -i cp --reflink=auto -a ./doc/dox/html debian/libpwiz-doc/usr/share/doc/libpwiz-doc/ dh_installman -i install -d debian/libpwiz-doc/usr/share/man/man7/ install -p -m0644 ./debian/libpwiz-doc.7 debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 man -l --recode UTF-8 ./debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 > debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7.dh-new mv debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7.dh-new debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 chmod 0644 -- debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 dh_compress -i cd debian/libpwiz-doc chmod a-x usr/share/doc/libpwiz-doc/changelog.Debian usr/share/man/man7/libpwiz-doc.7 gzip -9nf usr/share/doc/libpwiz-doc/changelog.Debian usr/share/man/man7/libpwiz-doc.7 cd '/<>' dh_fixperms -i find debian/libpwiz-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-doc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_installdeb -i install -d debian/libpwiz-doc/DEBIAN dh_lintian -i install -d debian/libpwiz-doc/usr/share/lintian/overrides install -p -m0644 debian/libpwiz-doc.lintian-overrides debian/libpwiz-doc/usr/share/lintian/overrides/libpwiz-doc dh_gencontrol -i echo misc:Depends= >> debian/libpwiz-doc.substvars echo misc:Pre-Depends= >> debian/libpwiz-doc.substvars dpkg-gencontrol -plibpwiz-doc -ldebian/changelog -Tdebian/libpwiz-doc.substvars -Pdebian/libpwiz-doc -UMulti-Arch chmod 0644 -- debian/libpwiz-doc/DEBIAN/control chown 0:0 -- debian/libpwiz-doc/DEBIAN/control dh_md5sums -i (cd debian/libpwiz-doc >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libpwiz-doc/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-doc/DEBIAN/md5sums dh_builddeb -i dpkg-deb --build debian/libpwiz-doc .. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing libpwiz-doc (in debian/libpwiz-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz-doc/DEBIAN/control, package libpwiz-doc, directory debian/libpwiz-doc pkgstripfiles: Truncating usr/share/doc/libpwiz-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package libpwiz-doc (to save build time) dpkg-deb: building package 'libpwiz-doc' in '../libpwiz-doc_3.0.10827-4build1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../libpwiz_3.0.10827-4build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build libpwiz-3.0.10827 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180717-1828 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libpwiz_3.0.10827-4build1_amd64.changes: ---------------------------------------- Format: 1.8 Date: Tue, 17 Jul 2018 12:58:02 +0000 Source: libpwiz Binary: libpwiz-dev libpwiz3 libpwiz-tools libpwiz-doc Architecture: amd64 all Version: 3.0.10827-4build1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: libpwiz-dev - library to perform proteomics data analyses (devel files) libpwiz-doc - set of programs to perform proteomics data analyses (doc) libpwiz-tools - ProteoWizard command line tools libpwiz3 - library to perform proteomics data analyses (runtime) Changes: libpwiz (3.0.10827-4build1) cosmic; urgency=medium . * No-change rebuild for boost soname change. Checksums-Sha1: bb9251a84e5df7ab6e4b8dd2efad686d20d97774 4716168 libpwiz-dev_3.0.10827-4build1_amd64.deb ff3d46a9681acd7281761a25cdfea66a4fb19a03 3830908 libpwiz-doc_3.0.10827-4build1_all.deb 07fcc56980b511eb5cb11bd1a5c4a3f16813335f 1949332 libpwiz-tools-dbgsym_3.0.10827-4build1_amd64.ddeb ac40be4905ee175b87cb1235088d6ee18fc34f9c 114724 libpwiz-tools_3.0.10827-4build1_amd64.deb 55ef472ff204af126b4e1f4ad2f8d5a9bbf0fcb7 62895192 libpwiz3-dbgsym_3.0.10827-4build1_amd64.ddeb 3cb634dd01e9418f9cec8a370ad7be64d6623191 2937164 libpwiz3_3.0.10827-4build1_amd64.deb 97173f559f5d69dbac3952c684c7faada3d03abb 11325 libpwiz_3.0.10827-4build1_amd64.buildinfo Checksums-Sha256: 72a2edfddb6d5ebaccd59632c9b07d4ab755ac81aea48c77f14c0fb52a9d97fc 4716168 libpwiz-dev_3.0.10827-4build1_amd64.deb 1de2b20b34a95080179cb185e009c77529c3c4213f96b8303bf5f74aeb27d18e 3830908 libpwiz-doc_3.0.10827-4build1_all.deb 141d2c6753e2b6c2d3580a5edbc7e8f4899841ae13c804384aa8c15139eaa653 1949332 libpwiz-tools-dbgsym_3.0.10827-4build1_amd64.ddeb 9a73e897710aa7c8e391a05a1c5524507cbba2ef4757fa95d7736c037e96790b 114724 libpwiz-tools_3.0.10827-4build1_amd64.deb 5d24175dae3fa5391487f7a8f067634c7ead5a9ddbde69ea72a197ea12389e9a 62895192 libpwiz3-dbgsym_3.0.10827-4build1_amd64.ddeb 748e23a246c5bfceae1eef69344a2ec603603b32a5db9eb971aff0c823458d2b 2937164 libpwiz3_3.0.10827-4build1_amd64.deb dac86886c83f6375fdd2133d2ffc13bef34f94f4bcc6b9abaf89690a04b4c805 11325 libpwiz_3.0.10827-4build1_amd64.buildinfo Files: d74b1f37af39326f6500e154968d00d4 4716168 libdevel extra libpwiz-dev_3.0.10827-4build1_amd64.deb 556ebee15ebbe4b279e8a06bcb47eeee 3830908 doc extra libpwiz-doc_3.0.10827-4build1_all.deb ed51e3c2aeb5af6704cacc0163c61440 1949332 debug optional libpwiz-tools-dbgsym_3.0.10827-4build1_amd64.ddeb ede4f5c01bf3e67409b752636e59783f 114724 science extra libpwiz-tools_3.0.10827-4build1_amd64.deb cac22a619d1c5c17bde7b4b374e6aeca 62895192 debug optional libpwiz3-dbgsym_3.0.10827-4build1_amd64.ddeb a8cc97d977b50970bd8bff3f1982e877 2937164 libs extra libpwiz3_3.0.10827-4build1_amd64.deb 13fcf0090cec84c9da122da1dc40d38d 11325 libs extra libpwiz_3.0.10827-4build1_amd64.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libpwiz-dev_3.0.10827-4build1_amd64.deb --------------------------------------- new debian package, version 2.0. size 4716168 bytes: control archive=10100 bytes. 1236 bytes, 27 lines control 31552 bytes, 339 lines md5sums Package: libpwiz-dev Source: libpwiz Version: 3.0.10827-4build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 43797 Depends: libpwiz3 (= 3.0.10827-4build1) Suggests: libpwiz-doc Section: libdevel Priority: extra Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: library to perform proteomics data analyses (devel files) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . 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libpwiz-doc_3.0.10827-4build1_all.deb ------------------------------------- new debian package, version 2.0. size 3830908 bytes: control archive=70632 bytes. 1262 bytes, 27 lines control 333004 bytes, 3056 lines md5sums Package: libpwiz-doc Source: libpwiz Version: 3.0.10827-4build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 72906 Depends: libjs-jquery Section: doc Priority: extra Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: set of programs to perform proteomics data analyses (doc) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . 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./usr/share/doc/libpwiz-doc/html/virtual__map_8hpp_source.html drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 23 2017-06-27 09:02 ./usr/share/lintian/overrides/libpwiz-doc drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/man/man7/ -rw-r--r-- root/root 1023 2018-07-17 12:58 ./usr/share/man/man7/libpwiz-doc.7.gz libpwiz-tools_3.0.10827-4build1_amd64.deb ----------------------------------------- new debian package, version 2.0. size 114724 bytes: control archive=1380 bytes. 1479 bytes, 29 lines control 618 bytes, 10 lines md5sums Package: libpwiz-tools Source: libpwiz Version: 3.0.10827-4build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 499 Depends: libboost-filesystem1.67.0, libboost-program-options1.67.0, libboost-system1.67.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libpwiz3 (= 3.0.10827-4build1), libstdc++6 (>= 5.2) Suggests: libpwiz-doc Section: science Priority: extra Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: ProteoWizard command line tools The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . This package ships command line tools that include _idconvert_ (conversion of MS identifications) and _msconvert_ (conversion of MS raw data files from/to any supported format). drwxr-xr-x root/root 0 2018-07-17 12:58 ./ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/bin/ -rwxr-xr-x root/root 141512 2018-07-17 12:58 ./usr/bin/idconvert -rwxr-xr-x root/root 22696 2018-07-17 12:58 ./usr/bin/mscat -rwxr-xr-x root/root 211152 2018-07-17 12:58 ./usr/bin/msconvert -rwxr-xr-x root/root 59560 2018-07-17 12:58 ./usr/bin/txt2mzml drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/doc/libpwiz-tools/ lrwxrwxrwx root/root 0 2018-07-17 12:58 ./usr/share/doc/libpwiz-tools/changelog.Debian.gz -> ../libpwiz3/changelog.Debian.gz -rw-r--r-- root/root 51335 2017-06-27 12:41 ./usr/share/doc/libpwiz-tools/copyright drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 22 2017-06-26 09:14 ./usr/share/lintian/overrides/libpwiz-tools drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/man/man1/ -rw-r--r-- root/root 1003 2018-07-17 12:58 ./usr/share/man/man1/idconvert.1.gz -rw-r--r-- root/root 539 2018-07-17 12:58 ./usr/share/man/man1/mscat.1.gz -rw-r--r-- root/root 1597 2018-07-17 12:58 ./usr/share/man/man1/msconvert.1.gz -rw-r--r-- root/root 593 2018-07-17 12:58 ./usr/share/man/man1/txt2mzml.1.gz libpwiz3_3.0.10827-4build1_amd64.deb ------------------------------------ new debian package, version 2.0. size 2937164 bytes: control archive=74212 bytes. 1381 bytes, 25 lines control 1175 bytes, 14 lines md5sums 35 bytes, 1 lines shlibs 1323173 bytes, 12566 lines symbols 74 bytes, 2 lines triggers Package: libpwiz3 Source: libpwiz Version: 3.0.10827-4build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 11615 Depends: libboost-chrono1.67.0, libboost-filesystem1.67.0, libboost-iostreams1.67.0, libboost-program-options1.67.0, libboost-serialization1.67.0, libboost-system1.67.0, libboost-thread1.67.0, libc6 (>= 2.27), libgcc1 (>= 1:4.0), libstdc++6 (>= 5.2) Suggests: libpwiz-doc Section: libs Priority: extra Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: library to perform proteomics data analyses (runtime) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. drwxr-xr-x root/root 0 2018-07-17 12:58 ./ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/lib/ lrwxrwxrwx root/root 0 2018-07-17 12:58 ./usr/lib/libpwiz.so.3 -> libpwiz.so.3.0.0 -rw-r--r-- root/root 10460304 2018-07-17 12:58 ./usr/lib/libpwiz.so.3.0.0 drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/doc/libpwiz3/ -rw-r--r-- root/root 1062 2018-07-17 12:58 ./usr/share/doc/libpwiz3/changelog.Debian.gz -rw-r--r-- root/root 51335 2017-06-27 12:41 ./usr/share/doc/libpwiz3/copyright drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/doc/libpwiz3/example-files/ -rw-r--r-- root/root 2768 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/hello_analyzer.cpp -rw-r--r-- root/root 4172 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/hello_analyzer_2.cpp -rw-r--r-- root/root 2362 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/hello_msdata.cpp -rw-r--r-- root/root 6288 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/mscat.cpp -rw-r--r-- root/root 5189 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/txt2mzml.cpp -rw-r--r-- root/root 3534 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/write_example_files.cpp -rw-r--r-- root/root 1738 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/write_mzid_example_files.cpp -rw-r--r-- root/root 1560 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/write_proteome_example_files.cpp -rw-r--r-- root/root 1896 2017-05-17 07:05 ./usr/share/doc/libpwiz3/example-files/write_traml_example_files.cpp drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 48 2017-06-26 09:14 ./usr/share/lintian/overrides/libpwiz3 drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-17 12:58 ./usr/share/man/man3/ -rw-r--r-- root/root 1503 2018-07-17 12:58 ./usr/share/man/man3/libpwiz.3.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 3867328 Build-Time: 6559 Distribution: cosmic-proposed Host Architecture: amd64 Install-Time: 48 Job: libpwiz_3.0.10827-4build1.dsc Machine Architecture: amd64 Package: libpwiz Package-Time: 6609 Source-Version: 3.0.10827-4build1 Space: 3867328 Status: successful Version: 3.0.10827-4build1 -------------------------------------------------------------------------------- Finished at 20180717-1828 Build needed 01:50:09, 3867328k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15138123 Scanning for processes to kill in build PACKAGEBUILD-15138123