https://launchpad.net/ubuntu/+source/libpwiz/3.0.18342-4.1/+build/27846873 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-s390x-015 5.4.0-172-generic #190-Ubuntu SMP Fri Feb 2 23:26:50 UTC 2024 s390x Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 29 Feb 12:03:27 ntpdate[1870]: adjust time server 10.211.37.1 offset 0.001750 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27846873 --image-type chroot /home/buildd/filecache-default/c23f799bb684944311373fdcead5a58221fa6ef7 Creating target for build PACKAGEBUILD-27846873 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27846873 Starting target for build PACKAGEBUILD-27846873 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27846873 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27846873 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27846873 Updating target for build PACKAGEBUILD-27846873 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main s390x Packages [1360 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [519 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe s390x Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6032 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [215 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [87.6 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [1081 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [473 kB] Fetched 24.6 MB in 8s (3054 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.36 libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libpam0g* usrmerge* The following NEW packages will be installed: cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-13-s390x-linux-gnu gcc-14-base gcc-s390x-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libpam0t64 libperl5.38 libunistring5 perl-modules-5.38 The following packages have been kept back: libnsl-dev libnsl2 libtirpc-dev libtirpc3 optipng The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-s390x-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpcre2-8-0 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 150 upgraded, 13 newly installed, 4 to remove and 5 not upgraded. Need to get 103 MB of archives. After this operation, 75.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu2 [1629 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu2 [20.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt1 s390x 1:4.4.36-4 [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main s390x linux-libc-dev s390x 6.8.0-11.11 [1590 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnss-nisplus s390x 1.3-0ubuntu7 [23.7 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu2 [2847 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu2 [654 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc-14-base s390x 14-20240221-2.1ubuntu1 [46.9 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgcc-s1 s390x 14-20240221-2.1ubuntu1 [35.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main s390x base-files s390x 13ubuntu7 [74.2 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.16 [94.6 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main s390x bash s390x 5.2.21-2ubuntu2 [845 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main s390x bsdutils s390x 1:2.39.3-6ubuntu2 [95.7 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main s390x coreutils s390x 9.4-3ubuntu2 [1482 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main s390x bzip2 s390x 1.0.8-5ubuntu1 [35.5 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-1.0 s390x 1.0.8-5ubuntu1 [40.1 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libgpg-error-l10n all 1.47-3build1 [8024 B] Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libgpg-error0 s390x 1.47-3build1 [75.6 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libgcrypt20 s390x 1.10.3-2 [499 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblzma5 s390x 5.6.0-0.2 [137 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libstdc++6 s390x 14-20240221-2.1ubuntu1 [908 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libacl1 s390x 2.3.2-1 [18.0 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main s390x libapparmor1 s390x 4.0.0~alpha4-0ubuntu1 [50.2 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libaudit-common all 1:3.1.2-2.1 [5674 B] Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libcap-ng0 s390x 0.8.4-2 [15.7 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libaudit1 s390x 1:3.1.2-2.1 [48.9 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libblkid1 s390x 2.39.3-6ubuntu2 [127 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libcap2 s390x 1:2.66-5ubuntu1 [31.7 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libssl3 s390x 3.0.10-1ubuntu4 [1648 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main s390x libzstd1 s390x 1.5.5+dfsg2-2 [336 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libkmod2 s390x 30+20230601-2ubuntu1 [54.5 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-8-0 s390x 10.42-4ubuntu1 [243 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libselinux1 s390x 3.5-2build2 [84.3 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libmount1 s390x 2.39.3-6ubuntu2 [138 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main s390x util-linux s390x 2.39.3-6ubuntu2 [1142 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsemanage-common all 3.5-1build3 [10.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libsepol2 s390x 3.5-2 [308 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsemanage2 s390x 3.5-1build3 [96.7 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libdebconfclient0 s390x 0.271ubuntu1 [11.3 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main s390x base-passwd s390x 3.6.3 [51.1 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g s390x 1:1.3.dfsg-3ubuntu1 [75.3 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gpgv s390x 2.4.4-2ubuntu8 [165 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libffi8 s390x 3.4.6-1 [23.0 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libp11-kit0 s390x 0.25.3-4ubuntu1 [318 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libunistring5 s390x 1.1-2 [544 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libidn2-0 s390x 2.3.7-2 [67.2 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libgnutls30 s390x 3.8.3-1ubuntu1 [944 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libseccomp2 s390x 2.5.5-1ubuntu1 [53.3 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main s390x passwd s390x 1:4.13+dfsg1-4ubuntu1 [857 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main s390x login s390x 1:4.13+dfsg1-4ubuntu1 [202 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsystemd0 s390x 255.4-1ubuntu1 [443 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd-dev all 255.4-1ubuntu1 [103 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd-sysv s390x 255.4-1ubuntu1 [11.9 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd s390x 255.4-1ubuntu1 [3534 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsystemd-shared s390x 255.4-1ubuntu1 [2131 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpam0t64 s390x 1.5.3-4ubuntu1 [69.4 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpam-modules-bin s390x 1.5.3-4ubuntu1 [57.2 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdb5.3t64 s390x 5.3.28+dfsg2-5 [763 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpam-modules s390x 1.5.3-4ubuntu1 [294 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main s390x apt-utils s390x 2.7.13 [214 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libapt-pkg6.0t64 s390x 2.7.13 [1014 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main s390x apt s390x 2.7.13 [1389 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl-modules-5.38 all 5.38.2-3ubuntu1 [3110 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libperl5.38 s390x 5.38.2-3ubuntu1 [4998 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl s390x 5.38.2-3ubuntu1 [231 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl-base s390x 5.38.2-3ubuntu1 [1961 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main s390x liblocale-gettext-perl s390x 1.07-6build1 [15.6 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libtext-iconv-perl s390x 1.7-8build1 [13.7 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libtext-charwidth-perl s390x 0.04-11build1 [9432 B] Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libgdbm6 s390x 1.23-5 [35.5 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libgdbm-compat4 s390x 1.23-5 [6538 B] Get:74 http://ftpmaster.internal/ubuntu noble/main s390x debconf-i18n all 1.5.86 [205 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main s390x debconf all 1.5.86 [124 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libargon2-1 s390x 0~20190702+dfsg-4 [53.1 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libudev1 s390x 255.4-1ubuntu1 [178 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdevmapper1.02.1 s390x 2:1.02.185-3ubuntu1 [141 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libuuid1 s390x 2.39.3-6ubuntu2 [35.2 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libcryptsetup12 s390x 2:2.6.1-6ubuntu1 [243 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libfdisk1 s390x 2.39.3-6ubuntu2 [151 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main s390x mount s390x 2.39.3-6ubuntu2 [119 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libxxhash0 s390x 0.8.2-2 [23.6 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main s390x tar s390x 1.35+dfsg-3 [269 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main s390x dpkg s390x 1.22.5ubuntu2 [1279 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main s390x dash s390x 0.5.12-6ubuntu4 [94.9 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main s390x diffutils s390x 1:3.10-1 [187 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main s390x grep s390x 3.11-4 [189 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main s390x gzip s390x 1.12-1ubuntu2 [106 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main s390x hostname s390x 3.23+nmu2ubuntu1 [11.1 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main s390x ncurses-bin s390x 6.4+20240113-1ubuntu1 [198 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main s390x sed s390x 4.9-2 [207 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main s390x init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main s390x ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main s390x sysvinit-utils s390x 3.08-6ubuntu2 [34.7 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main s390x init s390x 1.66ubuntu1 [6188 B] Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libsmartcols1 s390x 2.39.3-6ubuntu2 [67.5 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main s390x uuid-runtime s390x 2.39.3-6ubuntu2 [33.4 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libattr1 s390x 1:2.5.2-1 [11.7 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libmd0 s390x 1.1.0-2 [24.7 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpam-runtime all 1.5.3-4ubuntu1 [40.8 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libncursesw6 s390x 6.4+20240113-1ubuntu1 [161 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libtinfo6 s390x 6.4+20240113-1ubuntu1 [117 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main s390x g++-13 s390x 13.2.0-16ubuntu1 [14.5 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc-13 s390x 13.2.0-16ubuntu1 [465 kB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main s390x cpp-13 s390x 13.2.0-16ubuntu1 [1030 B] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-16ubuntu1 [9928 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcc1-0 s390x 14-20240221-2.1ubuntu1 [49.8 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libctf0 s390x 2.42-3ubuntu1 [98.4 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libctf-nobfd0 s390x 2.42-3ubuntu1 [100 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libsframe1 s390x 2.42-3ubuntu1 [14.3 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main s390x binutils-s390x-linux-gnu s390x 2.42-3ubuntu1 [2270 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main s390x libbinutils s390x 2.42-3ubuntu1 [477 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main s390x binutils s390x 2.42-3ubuntu1 [3058 B] Get:115 http://ftpmaster.internal/ubuntu noble/main s390x binutils-common s390x 2.42-3ubuntu1 [217 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libstdc++-13-dev s390x 13.2.0-16ubuntu1 [2429 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgomp1 s390x 14-20240221-2.1ubuntu1 [151 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libitm1 s390x 14-20240221-2.1ubuntu1 [31.1 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libatomic1 s390x 14-20240221-2.1ubuntu1 [9380 B] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libasan8 s390x 14-20240221-2.1ubuntu1 [2995 kB] Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libubsan1 s390x 14-20240221-2.1ubuntu1 [1185 kB] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgcc-13-dev s390x 13.2.0-16ubuntu1 [1004 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-16ubuntu1 [19.1 MB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-16ubuntu1 [11.3 MB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc-13-base s390x 13.2.0-16ubuntu1 [47.2 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libproc2-0 s390x 2:4.0.4-4ubuntu1 [60.0 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main s390x mawk s390x 1.3.4.20240123-1 [133 kB] Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main s390x procps s390x 2:4.0.4-4ubuntu1 [724 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main s390x sensible-utils all 0.0.22 [22.5 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main s390x openssl s390x 3.0.10-1ubuntu4 [1005 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main s390x ca-certificates all 20240203 [159 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main s390x krb5-locales all 1.20.1-5build1 [13.7 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libgssapi-krb5-2 s390x 1.20.1-5build1 [146 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main s390x libkrb5-3 s390x 1.20.1-5build1 [354 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main s390x libk5crypto3 s390x 1.20.1-5build1 [89.1 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main s390x libkrb5support0 s390x 1.20.1-5build1 [34.1 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main s390x libkeyutils1 s390x 1.6.3-3 [9448 B] Get:138 http://ftpmaster.internal/ubuntu noble/main s390x libip4tc2 s390x 1.8.10-3ubuntu1 [24.2 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main s390x readline-common all 8.2-3 [56.2 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main s390x libreadline8 s390x 8.2-3 [167 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main s390x libsqlite3-0 s390x 3.45.1-1 [747 kB] Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtirpc-common all 1.3.4+ds-1.1 [8018 B] Get:143 http://ftpmaster.internal/ubuntu noble/main s390x tzdata all 2024a-1ubuntu1 [273 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main s390x bash-completion all 1:2.11-8 [180 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main s390x bsdextrautils s390x 2.39.3-6ubuntu2 [76.3 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main s390x libpng16-16 s390x 1.6.43-1 [200 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main s390x psmisc s390x 23.6-2 [178 kB] Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main s390x xz-utils s390x 5.6.0-0.2 [274 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] Get:150 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] Get:151 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] Get:153 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] Get:154 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main s390x dpkg-dev all 1.22.5ubuntu2 [1061 kB] Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdpkg-perl all 1.22.5ubuntu2 [269 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main s390x lto-disabled-list all 47 [12.4 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main s390x libfakeroot s390x 1.33-1 [31.9 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main s390x fakeroot s390x 1.33-1 [67.5 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main s390x pinentry-curses s390x 1.2.1-3ubuntu1 [37.1 kB] Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gpg s390x 2.4.4-2ubuntu8 [589 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gpgconf s390x 2.4.4-2ubuntu8 [110 kB] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gpg-agent s390x 2.4.4-2ubuntu8 [240 kB] Preconfiguring packages ... 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Unpacking systemd (255.4-1ubuntu1) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd-shared_255.4-1ubuntu1_s390x.deb ... Unpacking libsystemd-shared:s390x (255.4-1ubuntu1) over (253.5-1ubuntu6) ... dpkg: libpam0g:s390x: dependency problems, but removing anyway as you requested: util-linux depends on libpam0g (>= 0.99.7.1). systemd depends on libpam0g (>= 0.99.7.1). passwd depends on libpam0g (>= 0.99.7.1). login depends on libpam0g (>= 0.99.7.1). libsystemd-shared:s390x depends on libpam0g (>= 0.99.7.1). libpam-modules-bin depends on libpam0g (>= 0.99.7.1). libpam-modules:s390x depends on libpam0g (>= 1.4.1). (Reading database ... 13550 files and directories currently installed.) Removing libpam0g:s390x (1.5.2-6ubuntu1) ... Selecting previously unselected package libpam0t64:s390x. (Reading database ... 13535 files and directories currently installed.) Preparing to unpack .../libpam0t64_1.5.3-4ubuntu1_s390x.deb ... Adding 'diversion of /lib/s390x-linux-gnu/libpam.so.0 to /lib/s390x-linux-gnu/libpam.so.0.usr-is-merged by libpam0t64' Adding 'diversion of /lib/s390x-linux-gnu/libpam.so.0.85.1 to /lib/s390x-linux-gnu/libpam.so.0.85.1.usr-is-merged by libpam0t64' Adding 'diversion of /lib/s390x-linux-gnu/libpam_misc.so.0 to /lib/s390x-linux-gnu/libpam_misc.so.0.usr-is-merged by libpam0t64' Adding 'diversion of /lib/s390x-linux-gnu/libpam_misc.so.0.82.1 to /lib/s390x-linux-gnu/libpam_misc.so.0.82.1.usr-is-merged by libpam0t64' Adding 'diversion of /lib/s390x-linux-gnu/libpamc.so.0 to /lib/s390x-linux-gnu/libpamc.so.0.usr-is-merged by libpam0t64' Adding 'diversion of /lib/s390x-linux-gnu/libpamc.so.0.82.1 to /lib/s390x-linux-gnu/libpamc.so.0.82.1.usr-is-merged by libpam0t64' Unpacking libpam0t64:s390x (1.5.3-4ubuntu1) ... Setting up libpam0t64:s390x (1.5.3-4ubuntu1) ... (Reading database ... 13561 files and directories currently installed.) 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Preparing to unpack .../56-pinentry-curses_1.2.1-3ubuntu1_s390x.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu1) over (1.2.1-1ubuntu1) ... Preparing to unpack .../57-gpg_2.4.4-2ubuntu8_s390x.deb ... Unpacking gpg (2.4.4-2ubuntu8) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../58-gpgconf_2.4.4-2ubuntu8_s390x.deb ... Unpacking gpgconf (2.4.4-2ubuntu8) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../59-gpg-agent_2.4.4-2ubuntu8_s390x.deb ... Unpacking gpg-agent (2.4.4-2ubuntu8) over (2.2.40-1.1ubuntu1) ... Setting up libip4tc2:s390x (1.8.10-3ubuntu1) ... Setting up libtext-iconv-perl:s390x (1.7-8build1) ... Setting up libtext-charwidth-perl:s390x (0.04-11build1) ... Setting up libkeyutils1:s390x (1.6.3-3) ... Setting up lto-disabled-list (47) ... Setting up apt-utils (2.7.13) ... Setting up bsdextrautils (2.39.3-6ubuntu2) ... Setting up init (1.66ubuntu1) ... Setting up psmisc (23.6-2) ... Setting up libtirpc-common (1.3.4+ds-1.1) ... Setting up libsqlite3-0:s390x (3.45.1-1) ... Setting up binutils-common:s390x (2.42-3ubuntu1) ... Setting up linux-libc-dev:s390x (6.8.0-11.11) ... Setting up libctf-nobfd0:s390x (2.42-3ubuntu1) ... Setting up krb5-locales (1.20.1-5build1) ... Setting up libgomp1:s390x (14-20240221-2.1ubuntu1) ... Setting up bzip2 (1.0.8-5ubuntu1) ... Setting up libnss-nisplus:s390x (1.3-0ubuntu7) ... Setting up libsframe1:s390x (2.42-3ubuntu1) ... Setting up libfakeroot:s390x (1.33-1) ... Setting up libkrb5support0:s390x (1.20.1-5build1) ... Setting up tzdata (2024a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Feb 29 12:04:54 UTC 2024. Universal Time is now: Thu Feb 29 12:04:54 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up gcc-13-base:s390x (13.2.0-16ubuntu1) ... Setting up cpp-13-s390x-linux-gnu (13.2.0-16ubuntu1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.0-0.2) ... Setting up perl-modules-5.38 (5.38.2-3ubuntu1) ... Setting up libproc2-0:s390x (2:4.0.4-4ubuntu1) ... Setting up libpng16-16:s390x (1.6.43-1) ... Setting up libatomic1:s390x (14-20240221-2.1ubuntu1) ... Setting up libncursesw6:s390x (6.4+20240113-1ubuntu1) ... Setting up libk5crypto3:s390x (1.20.1-5build1) ... Setting up libubsan1:s390x (14-20240221-2.1ubuntu1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-6ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:s390x (1:4.4.36-4) ... Setting up libasan8:s390x (14-20240221-2.1ubuntu1) ... Setting up procps (2:4.0.4-4ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:s390x (1.20.1-5build1) ... Setting up libbinutils:s390x (2.42-3ubuntu1) ... Setting up libc-dev-bin (2.39-0ubuntu2) ... Setting up openssl (3.0.10-1ubuntu4) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-3) ... Setting up libcc1-0:s390x (14-20240221-2.1ubuntu1) ... Setting up liblocale-gettext-perl (1.07-6build1) ... Setting up libitm1:s390x (14-20240221-2.1ubuntu1) ... Setting up libgdbm6:s390x (1.23-5) ... Setting up libctf0:s390x (2.42-3ubuntu1) ... Setting up pinentry-curses (1.2.1-3ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.42-3ubuntu1) ... Setting up cpp-13 (13.2.0-16ubuntu1) ... Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libreadline8:s390x (8.2-3) ... Setting up debconf-i18n (1.5.86) ... Setting up binutils (2.42-3ubuntu1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up libgssapi-krb5-2:s390x (1.20.1-5build1) ... Setting up libgdbm-compat4:s390x (1.23-5) ... Setting up libgcc-13-dev:s390x (13.2.0-16ubuntu1) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up gpgconf (2.4.4-2ubuntu8) ... Setting up libc6-dev:s390x (2.39-0ubuntu2) ... Setting up gpg (2.4.4-2ubuntu8) ... Setting up libstdc++-13-dev:s390x (13.2.0-16ubuntu1) ... Setting up gpg-agent (2.4.4-2ubuntu8) ... Setting up libperl5.38:s390x (5.38.2-3ubuntu1) ... Setting up perl (5.38.2-3ubuntu1) ... Setting up gcc-13-s390x-linux-gnu (13.2.0-16ubuntu1) ... Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++-13-s390x-linux-gnu (13.2.0-16ubuntu1) ... Setting up gcc-13 (13.2.0-16ubuntu1) ... Setting up libdpkg-perl (1.22.5ubuntu2) ... Setting up g++-13 (13.2.0-16ubuntu1) ... Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up dpkg-dev (1.22.5ubuntu2) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Processing triggers for libc-bin (2.39-0ubuntu2) ... Processing triggers for debianutils (5.16) ... (Reading database ... 15473 files and directories currently installed.) Purging configuration files for libpam0g:s390x (1.5.2-6ubuntu1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27846873 s390x noble-proposed -c chroot:build-PACKAGEBUILD-27846873 --arch=s390x --dist=noble-proposed --nolog libpwiz_3.0.18342-4.1.dsc Initiating build PACKAGEBUILD-27846873 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-172-generic #190-Ubuntu SMP Fri Feb 2 23:26:50 UTC 2024 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-s390x-015.buildd +==============================================================================+ | libpwiz 3.0.18342-4.1 (s390x) Thu, 29 Feb 2024 12:05:13 +0000 | +==============================================================================+ Package: libpwiz Version: 3.0.18342-4.1 Source Version: 3.0.18342-4.1 Distribution: noble-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27846873/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libpwiz-QYZv85/resolver-iKRLlP' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libpwiz_3.0.18342-4.1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libpwiz-QYZv85/libpwiz-3.0.18342' with '<>' I: NOTICE: Log filtering will replace 'build/libpwiz-QYZv85' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 12), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev, build-essential, fakeroot Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 12), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [521 B] Get:5 copy:/<>/apt_archive ./ Packages [602 B] Fetched 2086 B in 0s (58.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev chrpath debhelper debugedit dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0 libboost-date-time-dev libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex-dev libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost-tools-dev libboost1.83-dev libboost1.83-tools-dev libbrotli-dev libbrotli1 libbsd0 libbz2-dev libclang-cpp18 libclang1-18 libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libedit2 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfmt9 libfontconfig-dev libfontconfig1 libfreetype-dev libfreetype6 libgd-dev libgd3 libicu-dev libicu74 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libllvm18 liblzma-dev libmagic-mgc libmagic1 libosp5 libpipeline1 libpkgconf3 libpng-dev libpng16-16t64 libpthread-stubs0-dev libsharpyuv-dev libsharpyuv0 libsub-override-perl libtiff-dev libtiff6 libtiffxx6 libtool libuchardet0 libvpx-dev libvpx8 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libxapian30 libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libzstd-dev m4 man-db opensp pkgconf pkgconf-bin po-debconf sgml-base sgml-data uuid-dev x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make docbook-defguide docbook-dsssl docbook-xml psgml doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.83-doc libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libmpfrc++-dev libntl-dev xsltproc docbook-xsl default-jdk fop libeigen3-doc libfftw3-doc freetype2-doc libgd-tools icu-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc xapian-tools libxcb-doc m4-doc apparmor less www-browser doc-base libmail-box-perl sgml-base-doc perlsgml w3-recs libxml2-utils Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl javascript-common libpng-tools libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: libpng16-16* The following NEW packages will be installed: autoconf automake autopoint autotools-dev chrpath debhelper debugedit dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man doxygen dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0 libboost-date-time-dev libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex-dev libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost-tools-dev libboost1.83-dev libboost1.83-tools-dev libbrotli-dev libbrotli1 libbsd0 libbz2-dev libclang-cpp18 libclang1-18 libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libedit2 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfmt9 libfontconfig-dev libfontconfig1 libfreetype-dev libfreetype6 libgd-dev libgd3 libicu-dev libicu74 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libllvm18 liblzma-dev libmagic-mgc libmagic1 libosp5 libpipeline1 libpkgconf3 libpng-dev libpng16-16t64 libpthread-stubs0-dev libsharpyuv-dev libsharpyuv0 libsub-override-perl libtiff-dev libtiff6 libtiffxx6 libtool libuchardet0 libvpx-dev libvpx8 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libxapian30 libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libzstd-dev m4 man-db opensp pkgconf pkgconf-bin po-debconf sbuild-build-depends-main-dummy sgml-base sgml-data uuid-dev x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 147 newly installed, 1 to remove and 5 not upgraded. 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1:5.45-2 [22.2 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main s390x gettext-base s390x 0.21-14ubuntu1 [39.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libuchardet0 s390x 0.0.8-1 [76.1 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main s390x groff-base s390x 1.23.0-3 [1047 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libedit2 s390x 3.1-20230828-1 [106 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libpipeline1 s390x 1.5.7-1 [23.4 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libxau6 s390x 1:1.0.9-1build5 [7522 B] Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu5 [10.8 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libxcb1 s390x 1.15-1 [48.3 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libx11-data all 2:1.8.7-1 [115 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libx11-6 s390x 2:1.8.7-1 [672 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main s390x man-db s390x 2.12.0-3 [1246 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main s390x autopoint all 0.21-14ubuntu1 [422 kB] Get:28 http://ftpmaster.internal/ubuntu noble/universe s390x chrpath s390x 0.16-2build1 [13.2 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libdebhelper-perl all 13.14.1ubuntu1 [89.5 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libtool all 2.4.7-7 [166 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main s390x dh-autoreconf all 20 [16.1 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libsub-override-perl all 0.10-1 [10.0 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main s390x dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libdw1 s390x 0.190-1 [282 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main s390x debugedit s390x 1:5.0-5 [47.5 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main s390x dwz s390x 0.15-1 [108 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main s390x gettext s390x 0.21-14ubuntu1 [917 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main s390x debhelper all 13.14.1ubuntu1 [869 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main s390x xml-core all 0.19 [20.3 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main s390x sgml-data all 2.0.11+nmu1 [171 kB] Get:45 http://ftpmaster.internal/ubuntu noble/universe s390x docbook all 4.5-10 [120 kB] Get:46 http://ftpmaster.internal/ubuntu noble/universe s390x libosp5 s390x 1.5.2-13ubuntu3 [611 kB] Get:47 http://ftpmaster.internal/ubuntu noble/universe s390x opensp s390x 1.5.2-13ubuntu3 [137 kB] Get:48 http://ftpmaster.internal/ubuntu noble/universe s390x docbook-to-man s390x 1:2.0.0-45 [80.7 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libllvm18 s390x 1:18.1.0~rc2-4 [33.5 MB] Get:50 http://ftpmaster.internal/ubuntu noble/universe s390x libclang-cpp18 s390x 1:18.1.0~rc2-4 [16.1 MB] Get:51 http://ftpmaster.internal/ubuntu noble/universe s390x libclang1-18 s390x 1:18.1.0~rc2-4 [9350 kB] Get:52 http://ftpmaster.internal/ubuntu noble/universe s390x libfmt9 s390x 9.1.0+ds1-2 [62.4 kB] Get:53 http://ftpmaster.internal/ubuntu noble/universe s390x libxapian30 s390x 1.4.22-1 [656 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x doxygen s390x 1.9.8+ds-2build1 [5447 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.15.0-1ubuntu1 [37.0 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2ubuntu1 [15.3 MB] Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libboost-atomic1.83.0 s390x 1.83.0-2ubuntu1 [316 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libboost-atomic1.83-dev s390x 1.83.0-2ubuntu1 [312 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libboost-chrono1.83.0 s390x 1.83.0-2ubuntu1 [323 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libboost-chrono1.83-dev s390x 1.83.0-2ubuntu1 [328 kB] Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-chrono-dev s390x 1.83.0.1ubuntu2 [4672 B] Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libboost-date-time1.83.0 s390x 1.83.0-2ubuntu1 [312 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libboost-serialization1.83.0 s390x 1.83.0-2ubuntu1 [453 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libboost-serialization1.83-dev s390x 1.83.0-2ubuntu1 [553 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libboost-date-time1.83-dev s390x 1.83.0-2ubuntu1 [316 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-date-time-dev s390x 1.83.0.1ubuntu2 [4062 B] Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B] Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libboost-filesystem1.83.0 s390x 1.83.0-2ubuntu1 [372 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main s390x libboost-system1.83.0 s390x 1.83.0-2ubuntu1 [312 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libboost-system1.83-dev s390x 1.83.0-2ubuntu1 [308 kB] Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-filesystem1.83-dev s390x 1.83.0-2ubuntu1 [400 kB] Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-filesystem-dev s390x 1.83.0.1ubuntu2 [4096 B] Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex1.83.0 s390x 1.83.0-2ubuntu1 [449 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB] Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex1.83-dev s390x 1.83.0-2ubuntu1 [486 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libboost-iostreams1.83.0 s390x 1.83.0-2ubuntu1 [340 kB] Get:80 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-iostreams1.83-dev s390x 1.83.0-2ubuntu1 [351 kB] Get:81 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-iostreams-dev s390x 1.83.0.1ubuntu2 [4048 B] Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libboost-program-options1.83.0 s390x 1.83.0-2ubuntu1 [418 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main s390x libboost-program-options1.83-dev s390x 1.83.0-2ubuntu1 [526 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libboost-program-options-dev s390x 1.83.0.1ubuntu2 [4088 B] Get:85 http://ftpmaster.internal/ubuntu noble/main s390x libboost-regex-dev s390x 1.83.0.1ubuntu2 [4324 B] Get:86 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-system-dev s390x 1.83.0.1ubuntu2 [4206 B] Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libboost-thread1.83.0 s390x 1.83.0-2ubuntu1 [362 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main s390x libboost-thread1.83-dev s390x 1.83.0-2ubuntu1 [376 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libboost-thread-dev s390x 1.83.0.1ubuntu2 [4086 B] Get:90 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-tools-dev s390x 1.83.0-2ubuntu1 [1863 kB] Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-tools-dev s390x 1.83.0.1ubuntu2 [4240 B] Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libbrotli1 s390x 1.1.0-2 [374 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main s390x libbrotli-dev s390x 1.1.0-2 [393 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate-dev s390x 1.19-1 [52.4 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main s390x libexpat1-dev s390x 2.6.0-1 [1013 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu1 [465 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-long3 s390x 3.3.10-1ubuntu1 [506 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-single3 s390x 3.3.10-1ubuntu1 [449 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-bin s390x 3.3.10-1ubuntu1 [33.3 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libfftw3-dev s390x 3.3.10-1ubuntu1 [1242 kB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libfreetype6 s390x 2.13.2+dfsg-1build1 [437 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.15.0-1ubuntu1 [150 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3ubuntu1 [905 kB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpng-dev s390x 1.6.43-2 [277 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libfreetype-dev s390x 2.13.2+dfsg-1build1 [611 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main s390x uuid-dev s390x 2.39.3-6ubuntu2 [34.2 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig-dev s390x 2.15.0-1ubuntu1 [172 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] Get:115 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsharpyuv0 s390x 1.3.2-0.4build1 [14.9 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libwebp7 s390x 1.3.2-0.4build1 [207 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu1 [218 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main s390x libxpm4 s390x 1:3.5.17-1 [40.9 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgd3 s390x 2.3.3-9ubuntu2 [141 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] Get:123 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libjbig-dev s390x 2.1-6.1ubuntu1 [28.3 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblzma-dev s390x 5.6.0-0.2 [185 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libzstd-dev s390x 1.5.5+dfsg2-2 [408 kB] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libwebpdemux2 s390x 1.3.2-0.4build1 [12.5 kB] Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libwebpmux3 s390x 1.3.2-0.4build1 [25.4 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libwebpdecoder3 s390x 1.3.2-0.4build1 [90.9 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsharpyuv-dev s390x 1.3.2-0.4build1 [14.6 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libwebp-dev s390x 1.3.2-0.4build1 [335 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtiffxx6 s390x 4.5.1+git230720-4ubuntu1 [5878 B] Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtiff-dev s390x 4.5.1+git230720-4ubuntu1 [358 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main s390x libvpx8 s390x 1.13.1-2ubuntu1 [1448 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main s390x libvpx-dev s390x 1.13.1-2ubuntu1 [1578 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main s390x xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main s390x x11proto-dev all 2023.2-1 [602 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main s390x libxau-dev s390x 1:1.0.9-1build5 [9702 B] Get:139 http://ftpmaster.internal/ubuntu noble/main s390x libxdmcp-dev s390x 1:1.1.3-0ubuntu5 [26.5 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main s390x xtrans-dev all 1.4.0-1 [68.9 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main s390x libpthread-stubs0-dev s390x 0.4-1build2 [5508 B] Get:142 http://ftpmaster.internal/ubuntu noble/main s390x libxcb1-dev s390x 1.15-1 [86.5 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main s390x libx11-dev s390x 2:1.8.7-1 [758 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main s390x libxpm-dev s390x 1:3.5.17-1 [113 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libgd-dev s390x 2.3.3-9ubuntu2 [270 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:147 http://ftpmaster.internal/ubuntu noble/universe s390x libeigen3-dev all 3.4.0-4 [1056 kB] Preconfiguring packages ... Fetched 141 MB in 11s (12.7 MB/s) dpkg: libpng16-16:s390x: dependency problems, but removing anyway as you requested: optipng depends on libpng16-16 (>= 1.6.2-1). (Reading database ... 15473 files and directories currently installed.) Removing libpng16-16:s390x (1.6.43-1) ... Selecting previously unselected package libpng16-16t64:s390x. (Reading database ... 15463 files and directories currently installed.) Preparing to unpack .../000-libpng16-16t64_1.6.43-2_s390x.deb ... Unpacking libpng16-16t64:s390x (1.6.43-2) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../002-libbsd0_0.12.1-1_s390x.deb ... Unpacking libbsd0:s390x (0.12.1-1) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../003-libelf1_0.190-1_s390x.deb ... Unpacking libelf1:s390x (0.190-1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../004-libexpat1_2.6.0-1_s390x.deb ... Unpacking libexpat1:s390x (2.6.0-1) ... Selecting previously unselected package libicu74:s390x. Preparing to unpack .../005-libicu74_74.2-1ubuntu1_s390x.deb ... Unpacking libicu74:s390x (74.2-1ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../006-libxml2_2.9.14+dfsg-1.3ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.14+dfsg-1.3ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-2_s390x.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../008-libmagic1_1%3a5.45-2_s390x.deb ... Unpacking libmagic1:s390x (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-2_s390x.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.21-14ubuntu1_s390x.deb ... Unpacking gettext-base (0.21-14ubuntu1) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../011-libuchardet0_0.0.8-1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.8-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-3_s390x.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package libedit2:s390x. Preparing to unpack .../013-libedit2_3.1-20230828-1_s390x.deb ... Unpacking libedit2:s390x (3.1-20230828-1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../014-libpipeline1_1.5.7-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.7-1) ... Selecting previously unselected package libxau6:s390x. Preparing to unpack .../015-libxau6_1%3a1.0.9-1build5_s390x.deb ... Unpacking libxau6:s390x (1:1.0.9-1build5) ... Selecting previously unselected package libxdmcp6:s390x. Preparing to unpack .../016-libxdmcp6_1%3a1.1.3-0ubuntu5_s390x.deb ... Unpacking libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Selecting previously unselected package libxcb1:s390x. Preparing to unpack .../017-libxcb1_1.15-1_s390x.deb ... Unpacking libxcb1:s390x (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../018-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:s390x. Preparing to unpack .../019-libx11-6_2%3a1.8.7-1_s390x.deb ... Unpacking libx11-6:s390x (2:1.8.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../020-man-db_2.12.0-3_s390x.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../021-m4_1.4.19-4_s390x.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../022-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../023-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../024-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... Unpacking automake (1:1.16.5-1.3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../025-autopoint_0.21-14ubuntu1_all.deb ... Unpacking autopoint (0.21-14ubuntu1) ... Selecting previously unselected package chrpath. Preparing to unpack .../026-chrpath_0.16-2build1_s390x.deb ... Unpacking chrpath (0.16-2build1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../027-libdebhelper-perl_13.14.1ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.14.1ubuntu1) ... Selecting previously unselected package libtool. 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Selecting previously unselected package libeigen3-dev. Preparing to unpack .../145-libeigen3-dev_3.4.0-4_all.deb ... Unpacking libeigen3-dev (3.4.0-4) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../146-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:s390x (2.6.0-1) ... Setting up libpipeline1:s390x (1.5.7-1) ... Setting up libboost-program-options1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up libxapian30:s390x (1.4.22-1) ... Setting up libsharpyuv0:s390x (1.3.2-0.4build1) ... Setting up libxau6:s390x (1:1.0.9-1build5) ... Setting up libboost1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up libfftw3-single3:s390x (3.3.10-1ubuntu1) ... Setting up libzstd-dev:s390x (1.5.5+dfsg2-2) ... Setting up libboost-date-time1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up libdebhelper-perl (13.14.1ubuntu1) ... Setting up libbrotli1:s390x (1.1.0-2) ... Setting up libboost-system1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up libboost-program-options1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up libmagic1:s390x (1:5.45-2) ... Setting up libdeflate0:s390x (1.19-1) ... Setting up libwebpdecoder3:s390x (1.3.2-0.4build1) ... Setting up libboost-thread1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up libfftw3-long3:s390x (3.3.10-1ubuntu1) ... Setting up gettext-base (0.21-14ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up libboost-filesystem1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up libpthread-stubs0-dev:s390x (0.4-1build2) ... Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... Setting up libosp5 (1.5.2-13ubuntu3) ... Setting up libboost-atomic1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up libboost-serialization1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:s390x (1.8.1-2) ... Setting up libexpat1-dev:s390x (2.6.0-1) ... Setting up libboost-program-options-dev:s390x (1.83.0.1ubuntu2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libboost-iostreams1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up uuid-dev:s390x (2.39.3-6ubuntu2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:s390x (1.6.43-2) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libvpx8:s390x (1.13.1-2ubuntu1) ... Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... Setting up libfftw3-double3:s390x (3.3.10-1ubuntu1) ... Setting up libboost-atomic1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:s390x (1.3.2-0.4build1) ... Setting up libfmt9:s390x (9.1.0+ds1-2) ... Setting up liblzma-dev:s390x (5.6.0-0.2) ... Setting up libicu74:s390x (74.2-1ubuntu1) ... Setting up zlib1g-dev:s390x (1:1.3.dfsg-3ubuntu1) ... Setting up libboost-chrono1.83.0:s390x (1.83.0-2ubuntu1) ... Setting up libuchardet0:s390x (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ... Setting up libboost-system1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libsharpyuv-dev:s390x (1.3.2-0.4build1) ... Setting up libwebpmux3:s390x (1.3.2-0.4build1) ... Setting up libbsd0:s390x (0.12.1-1) ... Setting up libdeflate-dev:s390x (1.19-1) ... Setting up libelf1:s390x (0.190-1) ... Setting up libxml2:s390x (2.9.14+dfsg-1.3ubuntu1) ... Setting up libbrotli-dev:s390x (1.1.0-2) ... Setting up libboost1.83-tools-dev (1.83.0-2ubuntu1) ... Setting up chrpath (0.16-2build1) ... Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ... Setting up libjpeg8:s390x (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2023.2-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:s390x (0.190-1) ... Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Setting up libxcb1:s390x (1.15-1) ... Setting up gettext (0.21-14ubuntu1) ... Setting up libxau-dev:s390x (1:1.0.9-1build5) ... Setting up libboost-chrono1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up libtool (2.4.7-7) ... Setting up libboost-chrono-dev:s390x (1.83.0.1ubuntu2) ... Setting up libfftw3-bin (3.3.10-1ubuntu1) ... Setting up fontconfig-config (2.15.0-1ubuntu1) ... Setting up libwebpdemux2:s390x (1.3.2-0.4build1) ... Setting up libedit2:s390x (3.1-20230828-1) ... Setting up libboost-system-dev:s390x (1.83.0.1ubuntu2) ... Setting up libpng-dev:s390x (1.6.43-2) ... Setting up libboost-serialization1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up libjbig-dev:s390x (2.1-6.1ubuntu1) ... Setting up libboost-tools-dev (1.83.0.1ubuntu2) ... Setting up libboost-filesystem1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up opensp (1.5.2-13ubuntu3) ... Setting up pkgconf:s390x (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:s390x (1:1.1.3-0ubuntu5) ... Setting up libwebp-dev:s390x (1.3.2-0.4build1) ... Setting up libfreetype6:s390x (2.13.2+dfsg-1build1) ... Setting up libvpx-dev:s390x (1.13.1-2ubuntu1) ... Setting up libboost-date-time1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up icu-devtools (74.2-1ubuntu1) ... Setting up libboost-date-time-dev:s390x (1.83.0.1ubuntu2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu1) ... Setting up xml-core (0.19) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:s390x (2:1.8.7-1) ... Setting up libfontconfig1:s390x (2.15.0-1ubuntu1) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... Setting up libtiffxx6:s390x (4.5.1+git230720-4ubuntu1) ... Setting up libfftw3-dev:s390x (3.3.10-1ubuntu1) ... Setting up libicu-dev:s390x (74.2-1ubuntu1) ... Setting up libboost-filesystem-dev:s390x (1.83.0.1ubuntu2) ... Setting up libllvm18:s390x (1:18.1.0~rc2-4) ... Setting up libboost-thread1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up libclang1-18 (1:18.1.0~rc2-4) ... Setting up libxcb1-dev:s390x (1.15-1) ... Setting up libxpm4:s390x (1:3.5.17-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... Setting up libx11-dev:s390x (2:1.8.7-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libfreetype-dev:s390x (2.13.2+dfsg-1build1) ... Setting up libtiff-dev:s390x (4.5.1+git230720-4ubuntu1) ... Setting up libxpm-dev:s390x (1:3.5.17-1) ... Setting up libgd3:s390x (2.3.3-9ubuntu2) ... Setting up libboost-regex1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up libboost-regex-dev:s390x (1.83.0.1ubuntu2) ... Setting up libclang-cpp18 (1:18.1.0~rc2-4) ... Setting up libboost-thread-dev:s390x (1.83.0.1ubuntu2) ... Setting up libfontconfig-dev:s390x (2.15.0-1ubuntu1) ... Setting up libboost-iostreams1.83-dev:s390x (1.83.0-2ubuntu1) ... Setting up debhelper (13.14.1ubuntu1) ... Setting up libboost-iostreams-dev:s390x (1.83.0.1ubuntu2) ... Setting up doxygen (1.9.8+ds-2build1) ... Setting up libgd-dev:s390x (2.3.3-9ubuntu2) ... Processing triggers for libc-bin (2.39-0ubuntu2) ... Processing triggers for sgml-base (1.31) ... Setting up sgml-data (2.0.11+nmu1) ... Processing triggers for sgml-base (1.31) ... Setting up docbook (4.5-10) ... Processing triggers for sgml-base (1.31) ... Setting up docbook-to-man (1:2.0.0-45) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-172-generic #190-Ubuntu SMP Fri Feb 2 23:26:50 UTC 2024 s390x (s390x) Toolchain package versions: binutils_2.42-3ubuntu1 dpkg-dev_1.22.5ubuntu2 g++-13_13.2.0-16ubuntu1 gcc-13_13.2.0-16ubuntu1 libc6-dev_2.39-0ubuntu2 libstdc++-13-dev_13.2.0-16ubuntu1 libstdc++6_14-20240221-2.1ubuntu1 linux-libc-dev_6.8.0-11.11 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.13 apt-utils_2.7.13 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu7 base-passwd_3.6.3 bash_5.2.21-2ubuntu2 bash-completion_1:2.11-8 binutils_2.42-3ubuntu1 binutils-common_2.42-3ubuntu1 binutils-s390x-linux-gnu_2.42-3ubuntu1 bsdextrautils_2.39.3-6ubuntu2 bsdutils_1:2.39.3-6ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5ubuntu1 ca-certificates_20240203 chrpath_0.16-2build1 coreutils_9.4-3ubuntu2 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-16ubuntu1 cpp-13-s390x-linux-gnu_13.2.0-16ubuntu1 cpp-s390x-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu4 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu1 debianutils_5.16 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 docbook_4.5-10 docbook-to-man_1:2.0.0-45 doxygen_1.9.8+ds-2build1 dpkg_1.22.5ubuntu2 dpkg-dev_1.22.5ubuntu2 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.15.0-1ubuntu1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-16ubuntu1 g++-13-s390x-linux-gnu_13.2.0-16ubuntu1 g++-s390x-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-16ubuntu1 gcc-13-base_13.2.0-16ubuntu1 gcc-13-s390x-linux-gnu_13.2.0-16ubuntu1 gcc-14-base_14-20240221-2.1ubuntu1 gcc-s390x-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu1 gettext-base_0.21-14ubuntu1 gpg_2.4.4-2ubuntu8 gpg-agent_2.4.4-2ubuntu8 gpgconf_2.4.4-2ubuntu8 gpgv_2.4.4-2ubuntu8 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1ubuntu2 hostname_3.23+nmu2ubuntu1 icu-devtools_74.2-1ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-5build1 libacl1_2.3.2-1 libapparmor1_4.0.0~alpha4-0ubuntu1 libapt-pkg6.0t64_2.7.13 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_14-20240221-2.1ubuntu1 libassuan0_2.5.6-1 libatomic1_14-20240221-2.1ubuntu1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-3ubuntu1 libblkid1_2.39.3-6ubuntu2 libboost-atomic1.83-dev_1.83.0-2ubuntu1 libboost-atomic1.83.0_1.83.0-2ubuntu1 libboost-chrono-dev_1.83.0.1ubuntu2 libboost-chrono1.83-dev_1.83.0-2ubuntu1 libboost-chrono1.83.0_1.83.0-2ubuntu1 libboost-date-time-dev_1.83.0.1ubuntu2 libboost-date-time1.83-dev_1.83.0-2ubuntu1 libboost-date-time1.83.0_1.83.0-2ubuntu1 libboost-dev_1.83.0.1ubuntu2 libboost-filesystem-dev_1.83.0.1ubuntu2 libboost-filesystem1.83-dev_1.83.0-2ubuntu1 libboost-filesystem1.83.0_1.83.0-2ubuntu1 libboost-iostreams-dev_1.83.0.1ubuntu2 libboost-iostreams1.83-dev_1.83.0-2ubuntu1 libboost-iostreams1.83.0_1.83.0-2ubuntu1 libboost-program-options-dev_1.83.0.1ubuntu2 libboost-program-options1.83-dev_1.83.0-2ubuntu1 libboost-program-options1.83.0_1.83.0-2ubuntu1 libboost-regex-dev_1.83.0.1ubuntu2 libboost-regex1.83-dev_1.83.0-2ubuntu1 libboost-regex1.83.0_1.83.0-2ubuntu1 libboost-serialization1.83-dev_1.83.0-2ubuntu1 libboost-serialization1.83.0_1.83.0-2ubuntu1 libboost-system-dev_1.83.0.1ubuntu2 libboost-system1.83-dev_1.83.0-2ubuntu1 libboost-system1.83.0_1.83.0-2ubuntu1 libboost-thread-dev_1.83.0.1ubuntu2 libboost-thread1.83-dev_1.83.0-2ubuntu1 libboost-thread1.83.0_1.83.0-2ubuntu1 libboost-tools-dev_1.83.0.1ubuntu2 libboost1.83-dev_1.83.0-2ubuntu1 libboost1.83-tools-dev_1.83.0-2ubuntu1 libbrotli-dev_1.1.0-2 libbrotli1_1.1.0-2 libbsd0_0.12.1-1 libbz2-1.0_1.0.8-5ubuntu1 libbz2-dev_1.0.8-5ubuntu1 libc-bin_2.39-0ubuntu2 libc-dev-bin_2.39-0ubuntu2 libc6_2.39-0ubuntu2 libc6-dev_2.39-0ubuntu2 libcap-ng0_0.8.4-2 libcap2_1:2.66-5ubuntu1 libcc1-0_14-20240221-2.1ubuntu1 libclang-cpp18_1:18.1.0~rc2-4 libclang1-18_1:18.1.0~rc2-4 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libcryptsetup12_2:2.6.1-6ubuntu1 libctf-nobfd0_2.42-3ubuntu1 libctf0_2.42-3ubuntu1 libdb5.3t64_5.3.28+dfsg2-5 libdebconfclient0_0.271ubuntu1 libdebhelper-perl_13.14.1ubuntu1 libdeflate-dev_1.19-1 libdeflate0_1.19-1 libdevmapper1.02.1_2:1.02.185-3ubuntu1 libdpkg-perl_1.22.5ubuntu2 libdw1_0.190-1 libedit2_3.1-20230828-1 libeigen3-dev_3.4.0-4 libelf1_0.190-1 libexpat1_2.6.0-1 libexpat1-dev_2.6.0-1 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.33-1 libfdisk1_2.39.3-6ubuntu2 libffi8_3.4.6-1 libfftw3-bin_3.3.10-1ubuntu1 libfftw3-dev_3.3.10-1ubuntu1 libfftw3-double3_3.3.10-1ubuntu1 libfftw3-long3_3.3.10-1ubuntu1 libfftw3-single3_3.3.10-1ubuntu1 libfile-stripnondeterminism-perl_1.13.1-1 libfmt9_9.1.0+ds1-2 libfontconfig-dev_2.15.0-1ubuntu1 libfontconfig1_2.15.0-1ubuntu1 libfreetype-dev_2.13.2+dfsg-1build1 libfreetype6_2.13.2+dfsg-1build1 libgcc-13-dev_13.2.0-16ubuntu1 libgcc-s1_14-20240221-2.1ubuntu1 libgcrypt20_1.10.3-2 libgd-dev_2.3.3-9ubuntu2 libgd3_2.3.3-9ubuntu2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.3-1ubuntu1 libgomp1_14-20240221-2.1ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgssapi-krb5-2_1.20.1-5build1 libhogweed6_3.9.1-2 libicu-dev_74.2-1ubuntu1 libicu74_74.2-1ubuntu1 libidn2-0_2.3.7-2 libip4tc2_1.8.10-3ubuntu1 libisl23_0.26-3 libitm1_14-20240221-2.1ubuntu1 libjansson4_2.14-2 libjbig-dev_2.1-6.1ubuntu1 libjbig0_2.1-6.1ubuntu1 libjpeg-dev_8c-2ubuntu11 libjpeg-turbo8_2.1.5-2ubuntu1 libjpeg-turbo8-dev_2.1.5-2ubuntu1 libjpeg8_8c-2ubuntu11 libjpeg8-dev_8c-2ubuntu11 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjson-c5_0.17-1 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-3 libkmod2_30+20230601-2ubuntu1 libkrb5-3_1.20.1-5build1 libkrb5support0_1.20.1-5build1 libllvm18_1:18.1.0~rc2-4 liblocale-gettext-perl_1.07-6build1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma-dev_5.6.0-0.2 liblzma5_5.6.0-0.2 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-2 libmount1_2.39.3-6ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20240113-1ubuntu1 libnettle8_3.9.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-0ubuntu7 libosp5_1.5.2-13ubuntu3 libp11-kit0_0.25.3-4ubuntu1 libpam-modules_1.5.3-4ubuntu1 libpam-modules-bin_1.5.3-4ubuntu1 libpam-runtime_1.5.3-4ubuntu1 libpam0t64_1.5.3-4ubuntu1 libpcre2-8-0_10.42-4ubuntu1 libperl5.36_5.36.0-9ubuntu1 libperl5.38_5.38.2-3ubuntu1 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-2 libpng-dev_1.6.43-2 libpng16-16t64_1.6.43-2 libproc2-0_2:4.0.4-4ubuntu1 libpthread-stubs0-dev_0.4-1build2 libreadline8_8.2-3 libseccomp2_2.5.5-1ubuntu1 libselinux1_3.5-2build2 libsemanage-common_3.5-1build3 libsemanage2_3.5-1build3 libsepol2_3.5-2 libsframe1_2.42-3ubuntu1 libsharpyuv-dev_1.3.2-0.4build1 libsharpyuv0_1.3.2-0.4build1 libsmartcols1_2.39.3-6ubuntu2 libsqlite3-0_3.45.1-1 libss2_1.47.0-2ubuntu1 libssl3_3.0.10-1ubuntu4 libstdc++-13-dev_13.2.0-16ubuntu1 libstdc++6_14-20240221-2.1ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu1 libsystemd0_255.4-1ubuntu1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11build1 libtext-iconv-perl_1.7-8build1 libtext-wrapi18n-perl_0.06-10 libtiff-dev_4.5.1+git230720-4ubuntu1 libtiff6_4.5.1+git230720-4ubuntu1 libtiffxx6_4.5.1+git230720-4ubuntu1 libtinfo6_6.4+20240113-1ubuntu1 libtirpc-common_1.3.4+ds-1.1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_14-20240221-2.1ubuntu1 libuchardet0_0.0.8-1 libudev1_255.4-1ubuntu1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6ubuntu2 libvpx-dev_1.13.1-2ubuntu1 libvpx8_1.13.1-2ubuntu1 libwebp-dev_1.3.2-0.4build1 libwebp7_1.3.2-0.4build1 libwebpdecoder3_1.3.2-0.4build1 libwebpdemux2_1.3.2-0.4build1 libwebpmux3_1.3.2-0.4build1 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libx11-dev_2:1.8.7-1 libxapian30_1.4.22-1 libxau-dev_1:1.0.9-1build5 libxau6_1:1.0.9-1build5 libxcb1_1.15-1 libxcb1-dev_1.15-1 libxdmcp-dev_1:1.1.3-0ubuntu5 libxdmcp6_1:1.1.3-0ubuntu5 libxml2_2.9.14+dfsg-1.3ubuntu1 libxpm-dev_1:3.5.17-1 libxpm4_1:3.5.17-1 libxxhash0_0.8.2-2 libzstd-dev_1.5.5+dfsg2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.0-11.11 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-4ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_47 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 mount_2.39.3-6ubuntu2 ncurses-base_6.4+20240113-1ubuntu1 ncurses-bin_6.4+20240113-1ubuntu1 opensp_1.5.2-13ubuntu3 openssl_3.0.10-1ubuntu4 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-4ubuntu1 patch_2.7.6-7build2 perl_5.38.2-3ubuntu1 perl-base_5.38.2-3ubuntu1 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3ubuntu1 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 pkgconf_1.8.1-2 pkgconf-bin_1.8.1-2 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu1 psmisc_23.6-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sgml-base_1.31 sgml-data_2.0.11+nmu1 systemd_255.4-1ubuntu1 systemd-dev_255.4-1ubuntu1 systemd-sysv_255.4-1ubuntu1 sysvinit-utils_3.08-6ubuntu2 tar_1.35+dfsg-3 tzdata_2024a-1ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-6ubuntu2 uuid-dev_2.39.3-6ubuntu2 uuid-runtime_2.39.3-6ubuntu2 x11proto-dev_2023.2-1 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.6.0-0.2 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libpwiz Binary: libpwiz-dev, libpwiz3t64, libpwiz-tools, libpwiz-doc Architecture: any all Version: 3.0.18342-4.1 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: http://proteowizard.sourceforge.net/downloads.shtml Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/libpwiz Vcs-Git: https://salsa.debian.org/debichem-team/libpwiz.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 12), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev Package-List: libpwiz-dev deb libdevel optional arch=any libpwiz-doc deb doc optional arch=all libpwiz-tools deb science optional arch=any libpwiz3t64 deb libs optional arch=any Checksums-Sha1: d653a9eefc8b97ba6c2a0a57ef2235dab10d7e7d 3196944 libpwiz_3.0.18342.orig.tar.gz b2f4a5290ac46a04fc27cea9167df6f7ef342113 20184 libpwiz_3.0.18342-4.1.debian.tar.xz Checksums-Sha256: c43f94529fd4de8e6928befbd522308a6a965fef8970e6bc84613aa0a1338c98 3196944 libpwiz_3.0.18342.orig.tar.gz be16198663c966ee86920cc8332501c95e65f9c57733a893664ba85e220ddfc6 20184 libpwiz_3.0.18342-4.1.debian.tar.xz Files: 7b23d6a4f20bc577f23fa74880729e2d 3196944 libpwiz_3.0.18342.orig.tar.gz 1224621bcfcb8dbc3d43458dbabf9c8f 20184 libpwiz_3.0.18342-4.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEpi0s+9ULm1vzYNVLFZ61xO/Id0wFAmXfZsMACgkQFZ61xO/I d0x3Sg//aywNXwZDm/M0Y4pFmCxc97BROORiEFp6FII6/eoC9eOvR4tCAC98GmST Lva990X7vM3j6V/g2IWXSp99zA6IzE5mltNjlmaKlTadY9KSZpKyWOnQ27VeUJ4P GpxYXJuMdrqyd3CEtinLM0ZWvTh5uxkxmkkvSZN4jYXDqgKXyXxzPPYYDleMnx9I JXwleJGQempDOUTT7z8PmA8Xc0hsabVfo7DuK5hYci7IpT3A+lWEb06OrPRBJLWO GvRD/0MI1kyL/OAsrqE7694el1rrytRobbRo9CQQsf+x2pHugHp1VB+2faaLGqZw ISjgX214jpREEJCty89TaL8/J1QxBvPrTd9WkW014Bdk28+BoCuNOm94/LJn9c77 bwqkr91CkcNRgtFRTgWdXWGXO0RZLZu6+9DzOnv2/P+AaNrqszfEwuloqde4eR7T r1B8uWBQX+md7BlKytbG9VsPS3Qlp2BBtVlPmjwzVSQjlRUBvvFiQGR6acMCcGFB OxCeQOE/OZXfuFyjAboAyU2g+9CiX+yMaRqQN7IQ07DcofqgJBnF0rj4HHVHkqFe rZUFtij1ewBS8jvpcw/ir8X7p6kW1bbjY3h7qN8uFe9CzQW1bFsMtsdGfWfxMxMI fZ0o7y/t8rbOM4fvcUl08rvqo2Q4ZJPmTR8EtRRQziPgyw6DPXo= =/5Iq -----END PGP SIGNATURE----- gpgv: Signature made Wed Feb 28 17:00:51 2024 UTC gpgv: using RSA key A62D2CFBD50B9B5BF360D54B159EB5C4EFC8774C gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libpwiz_3.0.18342-4.1.dsc: no acceptable signature found dpkg-source: info: extracting libpwiz in /<> dpkg-source: info: unpacking libpwiz_3.0.18342.orig.tar.gz dpkg-source: info: unpacking libpwiz_3.0.18342-4.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-boost-fail-cast-tribool-to-bool-force-it.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27846873 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27846873 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27846873 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libpwiz dpkg-buildpackage: info: source version 3.0.18342-4.1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean "---------------------------------------" DEB_HOST_GNU_TYPE: s390x-linux-gnu DEB_BUILD_GNU_TYPE s390x-linux-gnu DEB_BUILD_OPTIONS: parallel=4 DEB_HOST_MULTIARCH: s390x-linux-gnu "---------------------------------------" entering the clean target dh_testdir dh_testroot rm -f debian/msconvert.1 rm -f debian/idconvert.1 rm -f debian/mscat.1 rm -f debian/txt2mzml.1 rm -f autools/conf.log autools/config.status rm -rf /<>/debian/build rm -rf debian/includes rm -rf doc/dox/html rm -f configure-stamp rm -f build-arch-stamp rm -f build-indep-stamp dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3t64.substvars debian/libpwiz-tools.substvars debian/libpwiz-doc.substvars debian/files rm -fr -- debian/libpwiz-dev/ debian/tmp/ debian/libpwiz3t64/ debian/libpwiz-tools/ debian/libpwiz-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules build-arch "---------------------------------------" DEB_HOST_GNU_TYPE: s390x-linux-gnu DEB_BUILD_GNU_TYPE s390x-linux-gnu DEB_BUILD_OPTIONS: parallel=4 DEB_HOST_MULTIARCH: s390x-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3t64.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3t64/ debian/libpwiz3t64/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /<>/debian/build cp -rpf autotools libraries pwiz pwiz_tools /<>/debian/build echo "BOOST_LDPATH = /usr/lib/s390x-linux-gnu" > /<>/debian/build/autotools/Makefile.am-tmp cat /<>/debian/build/autotools/Makefile.am >> /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/libsvm-3.0"|' /<>/debian/build/autotools/Makefile.am-tmp mv /<>/debian/build/autotools/Makefile.am-tmp /<>/debian/build/autotools/Makefile.am rm -f /<>/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /<>/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr --build=s390x-linux-gnu --host=s390x-linux-gnu libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:11: You should run autoupdate. libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:11: the top level configure.ac:42: warning: The macro `BOOST_THREADS' is obsolete. configure.ac:42: You should run autoupdate. boost.m4:1306: BOOST_THREADS is expanded from... configure.ac:42: the top level configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C11 features... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by s390x-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/s390x-linux-gnu-nm -B checking the name lister (/usr/bin/s390x-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for s390x-linux-gnu-file... no checking for file... file checking for s390x-linux-gnu-objdump... s390x-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for s390x-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking for archiver @FILE support... @ checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking command to parse /usr/bin/s390x-linux-gnu-nm -B output from s390x-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for s390x-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if s390x-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for s390x-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-gcc static flag -static works... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking for s390x-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of s390x-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... s390x-linux-gnu-g++ -E checking for ld used by s390x-linux-gnu-g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the s390x-linux-gnu-g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for s390x-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-g++ static flag -static works... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for s390x-linux-gnu-gcc... (cached) s390x-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether s390x-linux-gnu-gcc accepts -g... (cached) yes checking for s390x-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of s390x-linux-gnu-gcc... (cached) gcc3 checking for fcntl.h... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for memory.h... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/ioctl.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int32_t... yes checking for int64_t... yes checking for off_t... yes checking for C/C++ restrict keyword... __restrict__ checking for size_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for ptrdiff_t... yes checking for error_at_line... yes checking for GNU libc compatible malloc... yes checking for alarm... yes checking for working mktime... yes checking for GNU libc compatible realloc... yes checking for atexit... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for modf... yes checking for pow... no checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for strtoull... yes checking for Boost headers version >= 1.43.0... yes checking for Boost's header version... 1_83 checking for the flags needed to use pthreads... conftest.cpp: In function 'int main()': conftest.cpp:62:22: warning: argument 1 null where non-null expected [-Wnonnull] 62 | pthread_attr_init(0); pthread_cleanup_push(0, 0); | ~~~~~~~~~~~~~~~~~^~~ In file included from conftest.cpp:57: /usr/include/pthread.h:285:12: note: in a call to function 'int pthread_attr_init(pthread_attr_t*)' declared 'nonnull' 285 | extern int pthread_attr_init (pthread_attr_t *__attr) __THROW __nonnull ((1)); | ^~~~~~~~~~~~~~~~~ conftest.cpp:63:19: warning: argument 1 null where non-null expected [-Wnonnull] 63 | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/pthread.h:202:12: note: in a call to function 'int pthread_create(pthread_t*, const pthread_attr_t*, void* (*)(void*), void*)' declared 'nonnull' 202 | extern int pthread_create (pthread_t *__restrict __newthread, | ^~~~~~~~~~~~~~ conftest.cpp:63:19: warning: argument 3 null where non-null expected [-Wnonnull] 63 | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/pthread.h:202:12: note: in a call to function 'int pthread_create(pthread_t*, const pthread_attr_t*, void* (*)(void*), void*)' declared 'nonnull' 202 | extern int pthread_create (pthread_t *__restrict __newthread, | ^~~~~~~~~~~~~~ -pthread checking for the toolset name used by Boost for s390x-linux-gnu-g++... configure: WARNING: could not figure out which toolset name to use for s390x-linux-gnu-g++ checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking for boost/thread.hpp... yes checking for the Boost thread library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/filesystem/path.hpp... yes checking for the Boost filesystem library... (cached) yes checking for boost/regex.hpp... yes checking for the Boost regex library... (cached) yes checking for boost/archive/text_oarchive.hpp... yes checking for the Boost serialization library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/chrono.hpp... yes checking for the Boost chrono library... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /<>/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/s390x-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/<>/debian/build /usr/bin/make install make[1]: Entering directory '/<>/debian/build' depbase=`echo pwiz_tools/examples/txt2mzml.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/txt2mzml.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/txt2mzml.o pwiz_tools/examples/txt2mzml.cpp &&\ mv -f $depbase.Tpo $depbase.Po In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/MSDataFile.hpp:29, from pwiz_tools/examples/txt2mzml.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from pwiz_tools/examples/txt2mzml.cpp:26: pwiz_tools/examples/txt2mzml.cpp: In function ‘void txt2mzml(const char*, const char*)’: pwiz_tools/examples/txt2mzml.cpp:68:41: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 68 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ ./pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ./pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz_tools/examples/txt2mzml.cpp:69:74: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 69 | sourceFile->location = string("file://") + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ depbase=`echo libraries/boost_aux/libs/nowide/src/iostream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 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libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF $depbase.Tpo -c -o libraries/boost_aux/libs/nowide/src/iostream.lo libraries/boost_aux/libs/nowide/src/iostream.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -fPIC -DPIC -o libraries/boost_aux/libs/nowide/src/.libs/iostream.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -o libraries/boost_aux/libs/nowide/src/iostream.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/erf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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-c pwiz/data/tradata/Reader.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/Reader.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/Reader.lo -MD -MP -MF pwiz/data/tradata/.deps/Reader.Tpo -c pwiz/data/tradata/Reader.cpp -o pwiz/data/tradata/Reader.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Diff.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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-Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Diff.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Diff.lo pwiz/data/msdata/Diff.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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pwiz/data/msdata/Diff.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Diff.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/Diff.hpp:29, from pwiz/data/msdata/Diff.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Diff.lo -MD -MP -MF pwiz/data/msdata/.deps/Diff.Tpo -c pwiz/data/msdata/Diff.cpp -o pwiz/data/msdata/Diff.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/SpectrumList_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Thermo/.libs/SpectrumList_Thermo.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp:29, from pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp:27: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/SpectrumList_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp -o pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFitter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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-I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFitter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFitter.lo pwiz/analysis/peakdetect/PeakFitter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFitter.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFitter.Tpo -c pwiz/analysis/peakdetect/PeakFitter.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFitter.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFitter.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFitter.Tpo -c pwiz/analysis/peakdetect/PeakFitter.cpp -o pwiz/analysis/peakdetect/PeakFitter.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo -MD -MP -MF pwiz/data/vendor_readers/UNIFI/.deps/SpectrumList_UNIFI.Tpo -c pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UNIFI/.libs/SpectrumList_UNIFI.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp:24, from pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo -MD -MP -MF pwiz/data/vendor_readers/UNIFI/.deps/SpectrumList_UNIFI.Tpo -c pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.cpp -o pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.o >/dev/null 2>&1 depbase=`echo pwiz/utility/minimxml/XMLWriter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/DefaultReaderList.lo -MD -MP -MF pwiz/data/tradata/.deps/DefaultReaderList.Tpo -c pwiz/data/tradata/DefaultReaderList.cpp -o pwiz/data/tradata/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxDebugWriter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxDebugWriter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxDebugWriter.lo pwiz/analysis/demux/DemuxDebugWriter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxDebugWriter.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxDebugWriter.Tpo -c pwiz/analysis/demux/DemuxDebugWriter.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxDebugWriter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/DemuxTypes.hpp:23, from pwiz/analysis/demux/DemuxDebugWriter.hpp:23, from pwiz/analysis/demux/DemuxDebugWriter.cpp:20: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxDebugWriter.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxDebugWriter.Tpo -c pwiz/analysis/demux/DemuxDebugWriter.cpp -o pwiz/analysis/demux/DemuxDebugWriter.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/BinaryDataEncoder.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/BinaryDataEncoder.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/BinaryDataEncoder.lo pwiz/data/msdata/BinaryDataEncoder.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/BinaryDataEncoder.lo -MD -MP -MF pwiz/data/msdata/.deps/BinaryDataEncoder.Tpo -c pwiz/data/msdata/BinaryDataEncoder.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/BinaryDataEncoder.o In file included from pwiz/data/msdata/BinaryDataEncoder.hpp:29, from pwiz/data/msdata/BinaryDataEncoder.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/BinaryDataEncoder.lo -MD -MP -MF pwiz/data/msdata/.deps/BinaryDataEncoder.Tpo -c pwiz/data/msdata/BinaryDataEncoder.cpp -o pwiz/data/msdata/BinaryDataEncoder.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_3D.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_3D.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_3D.lo pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_3D.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_3D.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_3D.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /usr/include/boost/move/algorithm.hpp:31, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/icl/impl_config.hpp:57, from /usr/include/boost/icl/interval_base_set.hpp:12, from /usr/include/boost/icl/interval_set.hpp:14, from pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_3D.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_3D.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_3D.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionSlice.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionSlice.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/RegionSlice.lo pwiz/analysis/passive/RegionSlice.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionSlice.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSlice.Tpo -c pwiz/analysis/passive/RegionSlice.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionSlice.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/RegionSlice.hpp:29, from pwiz/analysis/passive/RegionSlice.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionSlice.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSlice.Tpo -c pwiz/analysis/passive/RegionSlice.cpp -o pwiz/analysis/passive/RegionSlice.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideIDMap.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" 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"/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peptideid/PeptideIDMap.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peptideid/PeptideIDMap.lo pwiz/analysis/peptideid/PeptideIDMap.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:30, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/numeric/ublas/fwd.hpp:18, from /usr/include/boost/numeric/ublas/detail/config.hpp:299, from /usr/include/boost/numeric/ublas/exception.hpp:19, from /usr/include/boost/numeric/ublas/storage.hpp:26, from /usr/include/boost/numeric/ublas/vector.hpp:21, from pwiz/analysis/frequency/ParametrizedFunction.hpp:32, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 43 | static std::auto_ptr create(); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:27: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | static std::auto_ptr create(const Function& function, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:62:15: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | PWIZ_API_DECL auto_ptr TruncatedLorentzianEstimator::create() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::TruncatedLorentzianEstimator::create()’: pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:64:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 64 | return auto_ptr(new TruncatedLorentzianEstimatorImpl); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In member function ‘virtual pwiz::frequency::TruncatedLorentzianParameters pwiz::frequency::TruncatedLorentzianEstimatorImpl::iteratedEstimate(const pwiz::data::FrequencyData&, const pwiz::frequency::TruncatedLorentzianParameters&, int) const’: pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:146:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 146 | auto_ptr pe = | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorRecalculatorDefault.Tpo -c pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/PrecursorRecalculatorDefault.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp:28, from pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp:28, from pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorRecalculatorDefault.Tpo -c pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp -o pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.o >/dev/null 2>&1 depbase=`echo pwiz/utility/proteome/IPIFASTADatabase.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/proteome/IPIFASTADatabase.lo pwiz/utility/proteome/IPIFASTADatabase.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -fPIC -DPIC -o pwiz/utility/proteome/.libs/IPIFASTADatabase.o In file included from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: pwiz/utility/proteome/IPIFASTADatabase.hpp:72:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from pwiz/utility/proteome/IPIFASTADatabase.hpp:29: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/Version.lo -MD -MP -MF pwiz/.deps/Version.Tpo -c pwiz/Version.cpp -o pwiz/Version.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.lo pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.lo -MD -MP -MF pwiz/data/vendor_readers/UNIFI/.deps/Reader_UNIFI_Detail.Tpo -c pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UNIFI/.libs/Reader_UNIFI_Detail.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp:27, from pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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pwiz/data/vendor_readers/UNIFI/.deps/Reader_UNIFI_Detail.Tpo -c pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.cpp -o pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/IdentData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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pwiz/analysis/peakdetect/PeakelPicker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakelPicker.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakelPicker.Tpo -c pwiz/analysis/peakdetect/PeakelPicker.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakelPicker.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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-ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakelPicker.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakelPicker.Tpo -c pwiz/analysis/peakdetect/PeakelPicker.cpp -o pwiz/analysis/peakdetect/PeakelPicker.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_TitleMaker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_TitleMaker.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp: In function ‘std::string pwiz::analysis::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)’: pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp:69:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 69 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from ./pwiz/utility/misc/Filesystem.hpp:37, from pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp:28: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp:70:65: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 70 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_TitleMaker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/T2D/.deps/SpectrumList_ABI_T2D.Tpo -c pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/T2D/.libs/SpectrumList_ABI_T2D.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp:24, from pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/T2D/.deps/SpectrumList_ABI_T2D.Tpo -c pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp -o pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumListCache.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumListCache.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumListCache.lo pwiz/data/msdata/SpectrumListCache.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumListCache.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumListCache.Tpo -c pwiz/data/msdata/SpectrumListCache.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumListCache.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/SpectrumListCache.hpp:27, from pwiz/data/msdata/SpectrumListCache.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumListCache.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumListCache.Tpo -c pwiz/data/msdata/SpectrumListCache.cpp -o pwiz/data/msdata/SpectrumListCache.o >/dev/null 2>&1 depbase=`echo pwiz_tools/common/MSDataAnalyzerApplication.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/common/MSDataAnalyzerApplication.lo pwiz_tools/common/MSDataAnalyzerApplication.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF pwiz_tools/common/.deps/MSDataAnalyzerApplication.Tpo -c pwiz_tools/common/MSDataAnalyzerApplication.cpp -fPIC -DPIC -o pwiz_tools/common/.libs/MSDataAnalyzerApplication.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz_tools/common/MSDataAnalyzerApplication.hpp:29, from pwiz_tools/common/MSDataAnalyzerApplication.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from pwiz_tools/common/MSDataAnalyzerApplication.cpp:30: pwiz_tools/common/MSDataAnalyzerApplication.cpp: In member function ‘void pwiz::analysis::MSDataAnalyzerApplication::run(pwiz::analysis::MSDataAnalyzer&, std::ostream*) const’: pwiz_tools/common/MSDataAnalyzerApplication.cpp:185:74: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 185 | dataInfo.sourceFilename = BFS_STRING(bfs::path(filename).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ ./pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ./pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF pwiz_tools/common/.deps/MSDataAnalyzerApplication.Tpo -c pwiz_tools/common/MSDataAnalyzerApplication.cpp -o pwiz_tools/common/MSDataAnalyzerApplication.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/CubicHermiteSpline.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/CubicHermiteSpline.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/CubicHermiteSpline.lo pwiz/analysis/demux/CubicHermiteSpline.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/CubicHermiteSpline.lo -MD -MP -MF pwiz/analysis/demux/.deps/CubicHermiteSpline.Tpo -c pwiz/analysis/demux/CubicHermiteSpline.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/CubicHermiteSpline.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/CubicHermiteSpline.lo -MD -MP -MF pwiz/analysis/demux/.deps/CubicHermiteSpline.Tpo -c pwiz/analysis/demux/CubicHermiteSpline.cpp -o pwiz/analysis/demux/CubicHermiteSpline.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ScanSummer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ScanSummer.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp:31, from pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp:30: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ScanSummer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/TabReader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/TabReader.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/TabReader.lo pwiz/utility/misc/TabReader.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/TabReader.lo -MD -MP -MF pwiz/utility/misc/.deps/TabReader.Tpo -c pwiz/utility/misc/TabReader.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/TabReader.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/TabReader.lo -MD -MP -MF pwiz/utility/misc/.deps/TabReader.Tpo -c pwiz/utility/misc/TabReader.cpp -o pwiz/utility/misc/TabReader.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureModeler.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureModeler.lo pwiz/analysis/peakdetect/FeatureModeler.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureModeler.Tpo -c pwiz/analysis/peakdetect/FeatureModeler.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureModeler.o In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureModeler.Tpo -c pwiz/analysis/peakdetect/FeatureModeler.cpp -o pwiz/analysis/peakdetect/FeatureModeler.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_MSn.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_MSn.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_MSn.lo pwiz/data/msdata/Serializer_MSn.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_MSn.Tpo -c pwiz/data/msdata/Serializer_MSn.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_MSn.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/Serializer_MSn.hpp:26, from pwiz/data/msdata/Serializer_MSn.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 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--mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/diff_std.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/common/diff_std.lo pwiz/data/common/diff_std.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/diff_std.lo -MD -MP -MF pwiz/data/common/.deps/diff_std.Tpo -c pwiz/data/common/diff_std.cpp -fPIC -DPIC -o pwiz/data/common/.libs/diff_std.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/diff_std.lo -MD -MP -MF pwiz/data/common/.deps/diff_std.Tpo -c pwiz/data/common/diff_std.cpp -o pwiz/data/common/diff_std.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/ChromatogramList_ABI.Tpo -c pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/.libs/ChromatogramList_ABI.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/ChromatogramListBase.hpp:28, from pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp:24, from pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/ChromatogramList_ABI.Tpo -c pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.cpp -o pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakelGrower.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/AminoAcid.lo -MD -MP -MF pwiz/data/proteome/.deps/AminoAcid.Tpo -c pwiz/data/proteome/AminoAcid.cpp -o pwiz/data/proteome/AminoAcid.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/DefaultReaderList.lo pwiz/data/proteome/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF pwiz/data/proteome/.deps/DefaultReaderList.Tpo -c pwiz/data/proteome/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/DefaultReaderList.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF pwiz/data/proteome/.deps/DefaultReaderList.Tpo -c pwiz/data/proteome/DefaultReaderList.cpp -o pwiz/data/proteome/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_pepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peptideid/PeptideID_pepXML.lo pwiz/analysis/peptideid/PeptideID_pepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o pwiz/analysis/peptideid/PeptideID_pepXML.cpp: In constructor ‘pwiz::peptideid::PeptideID_pepXml::Impl::Impl(std::istream*)’: pwiz/analysis/peptideid/PeptideID_pepXML.cpp:110:23: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 110 | filename.empty(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/string:54, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/analysis/peptideid/PeptideID_pepXML.cpp:25: /usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here 1220 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -o pwiz/analysis/peptideid/PeptideID_pepXML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakExtractor.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakExtractor.Tpo -c pwiz/analysis/peakdetect/PeakExtractor.cpp -o pwiz/analysis/peakdetect/PeakExtractor.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/Base64.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/utility/misc/Base64.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/Base64.lo -MD -MP -MF pwiz/utility/misc/.deps/Base64.Tpo -c pwiz/utility/misc/Base64.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/Base64.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/Base64.lo -MD -MP -MF pwiz/utility/misc/.deps/Base64.Tpo -c pwiz/utility/misc/Base64.cpp -o pwiz/utility/misc/Base64.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_BTDX.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_BTDX.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_BTDX.lo pwiz/data/msdata/SpectrumList_BTDX.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_BTDX.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_BTDX.Tpo -c pwiz/data/msdata/SpectrumList_BTDX.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_BTDX.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_BTDX.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_BTDX.Tpo -c pwiz/data/msdata/SpectrumList_BTDX.cpp -o pwiz/data/msdata/SpectrumList_BTDX.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSDataFile.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSDataFile.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/MSDataFile.lo pwiz/data/msdata/MSDataFile.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSDataFile.lo -MD -MP -MF pwiz/data/msdata/.deps/MSDataFile.Tpo -c pwiz/data/msdata/MSDataFile.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/MSDataFile.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/MSDataFile.hpp:29, from pwiz/data/msdata/MSDataFile.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSDataFile.lo -MD -MP -MF pwiz/data/msdata/.deps/MSDataFile.Tpo -c pwiz/data/msdata/MSDataFile.cpp -o pwiz/data/msdata/MSDataFile.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Reader_FASTA.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Reader_FASTA.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Reader_FASTA.lo pwiz/data/proteome/Reader_FASTA.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Reader_FASTA.lo -MD -MP -MF pwiz/data/proteome/.deps/Reader_FASTA.Tpo -c pwiz/data/proteome/Reader_FASTA.cpp -o pwiz/data/proteome/Reader_FASTA.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/IO.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" 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-fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/IO.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/IO.lo pwiz/data/msdata/IO.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/IO.lo -MD -MP -MF pwiz/data/msdata/.deps/IO.Tpo -c pwiz/data/msdata/IO.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/IO.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/IO.hpp:29, from pwiz/data/msdata/IO.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/IO.lo -MD -MP -MF pwiz/data/msdata/.deps/IO.Tpo -c pwiz/data/msdata/IO.cpp -o pwiz/data/msdata/IO.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/CwtPeakDetector.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/CwtPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/CwtPeakDetector.Tpo -c pwiz/analysis/common/CwtPeakDetector.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/CwtPeakDetector.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/CwtPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/CwtPeakDetector.Tpo -c pwiz/analysis/common/CwtPeakDetector.cpp -o pwiz/analysis/common/CwtPeakDetector.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureDetectorSimple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 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-mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorSimple.lo pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/FeatureDetector.hpp:29, from pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp:26, from pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from ./pwiz/data/misc/CalibrationParameters.hpp:29, from ./pwiz/data/misc/PeakData.hpp:28, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureDetector.hpp:27: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ which has internal linkage [-Wsubobject-linkage] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ which has internal linkage [-Wsubobject-linkage] libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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>/dev/null 2>&1 depbase=`echo pwiz/utility/misc/SHA1.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/SHA1.lo pwiz/utility/misc/SHA1.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1.Tpo -c pwiz/utility/misc/SHA1.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/SHA1.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1.Tpo -c pwiz/utility/misc/SHA1.cpp -o pwiz/utility/misc/SHA1.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/VendorReaderTestHarness.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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-I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/VendorReaderTestHarness.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/VendorReaderTestHarness.lo pwiz/utility/misc/VendorReaderTestHarness.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/VendorReaderTestHarness.lo -MD -MP -MF pwiz/utility/misc/.deps/VendorReaderTestHarness.Tpo -c pwiz/utility/misc/VendorReaderTestHarness.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/VendorReaderTestHarness.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/utility/misc/VendorReaderTestHarness.hpp:24, from pwiz/utility/misc/VendorReaderTestHarness.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/VendorReaderTestHarness.lo -MD -MP -MF pwiz/utility/misc/.deps/VendorReaderTestHarness.Tpo -c pwiz/utility/misc/VendorReaderTestHarness.cpp -o pwiz/utility/misc/VendorReaderTestHarness.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxSolver.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxSolver.lo pwiz/analysis/demux/DemuxSolver.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxSolver.Tpo -c pwiz/analysis/demux/DemuxSolver.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxSolver.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/DemuxTypes.hpp:23, from pwiz/analysis/demux/DemuxSolver.hpp:23, from pwiz/analysis/demux/DemuxSolver.cpp:22: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxSolver.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxSolver.Tpo -c pwiz/analysis/demux/DemuxSolver.cpp -o pwiz/analysis/demux/DemuxSolver.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumWorkerThreads.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumWorkerThreads.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumWorkerThreads.lo pwiz/data/msdata/SpectrumWorkerThreads.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 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pwiz/data/msdata/SpectrumWorkerThreads.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumWorkerThreads.Tpo -c pwiz/data/msdata/SpectrumWorkerThreads.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumWorkerThreads.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from pwiz/data/msdata/SpectrumWorkerThreads.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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>/dev/null 2>&1 depbase=`echo pwiz/data/identdata/DelimWriter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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pwiz/data/identdata/.deps/DelimWriter.Tpo -c pwiz/data/identdata/DelimWriter.cpp -o pwiz/data/identdata/DelimWriter.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/IO.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/TraData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/tradata/TraData.lo pwiz/data/tradata/TraData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 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-Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/TraData.lo -MD -MP -MF pwiz/data/tradata/.deps/TraData.Tpo -c pwiz/data/tradata/TraData.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/TraData.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/TraData.lo -MD -MP -MF pwiz/data/tradata/.deps/TraData.Tpo -c pwiz/data/tradata/TraData.cpp -o pwiz/data/tradata/TraData.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_MSn.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_MSn.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_MSn.lo pwiz/data/msdata/SpectrumList_MSn.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_MSn.Tpo -c pwiz/data/msdata/SpectrumList_MSn.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_MSn.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/msdata/SpectrumList_MSn.hpp:29, from pwiz/data/msdata/SpectrumList_MSn.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_MSn.Tpo -c pwiz/data/msdata/SpectrumList_MSn.cpp -o pwiz/data/msdata/SpectrumList_MSn.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_DecoyGenerator.Tpo -c pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinList_DecoyGenerator.o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp: In member function ‘virtual pwiz::proteome::ProteinPtr pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled::generate(const pwiz::proteome::Protein&) const’: pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp:152:24: warning: ‘void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator >; _Generator = boost::random::variate_generator, boost::uniform_int<> >&]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 152 | std::random_shuffle(shuffledSequence.begin(), shuffledSequence.end(), impl_->rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:67, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:37, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/chemistry/Chemistry.hpp:33, from ./pwiz/data/proteome/Peptide.hpp:29, from ./pwiz/data/proteome/ProteomeData.hpp:28, from ./pwiz/data/proteome/ProteinListWrapper.hpp:28, from pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp:28, from pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp:25: /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_DecoyGenerator.Tpo -c pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp -o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/MatrixIO.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/MatrixIO.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/MatrixIO.lo pwiz/analysis/demux/MatrixIO.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/MatrixIO.lo -MD -MP -MF pwiz/analysis/demux/.deps/MatrixIO.Tpo -c pwiz/analysis/demux/MatrixIO.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/MatrixIO.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/DemuxTypes.hpp:23, from pwiz/analysis/demux/MatrixIO.hpp:23, from pwiz/analysis/demux/MatrixIO.cpp:20: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/MatrixIO.lo -MD -MP -MF pwiz/analysis/demux/.deps/MatrixIO.Tpo -c pwiz/analysis/demux/MatrixIO.cpp -o pwiz/analysis/demux/MatrixIO.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/ChromatogramList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Waters/.libs/ChromatogramList_Waters.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/ChromatogramListBase.hpp:28, from pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp:24, from pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/ChromatogramList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp -o pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/WhittakerSmoother.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/WhittakerSmoother.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/WhittakerSmoother.lo pwiz/analysis/common/WhittakerSmoother.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" 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-D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/WhittakerSmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/WhittakerSmoother.Tpo -c pwiz/analysis/common/WhittakerSmoother.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/WhittakerSmoother.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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pwiz/analysis/common/WhittakerSmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/WhittakerSmoother.Tpo -c pwiz/analysis/common/WhittakerSmoother.cpp -o pwiz/analysis/common/WhittakerSmoother.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/OverlapDemultiplexer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/OverlapDemultiplexer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/OverlapDemultiplexer.lo pwiz/analysis/demux/OverlapDemultiplexer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/OverlapDemultiplexer.lo -MD -MP -MF pwiz/analysis/demux/.deps/OverlapDemultiplexer.Tpo -c pwiz/analysis/demux/OverlapDemultiplexer.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/OverlapDemultiplexer.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/DemuxTypes.hpp:23, from pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from pwiz/analysis/demux/IDemultiplexer.hpp:23, from pwiz/analysis/demux/OverlapDemultiplexer.hpp:23, from pwiz/analysis/demux/OverlapDemultiplexer.cpp:20: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/OverlapDemultiplexer.lo -MD -MP -MF pwiz/analysis/demux/.deps/OverlapDemultiplexer.Tpo -c pwiz/analysis/demux/OverlapDemultiplexer.cpp -o pwiz/analysis/demux/OverlapDemultiplexer.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/cv.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/cv.lo -MD -MP -MF pwiz/data/common/.deps/cv.Tpo -c pwiz/data/common/cv.cpp -o pwiz/data/common/cv.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxDebugReader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxDebugReader.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxDebugReader.lo pwiz/analysis/demux/DemuxDebugReader.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxDebugReader.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxDebugReader.Tpo -c pwiz/analysis/demux/DemuxDebugReader.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxDebugReader.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/DemuxTypes.hpp:23, from pwiz/analysis/demux/DemuxDebugReader.hpp:23, from pwiz/analysis/demux/DemuxDebugReader.cpp:20: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxDebugReader.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxDebugReader.Tpo -c pwiz/analysis/demux/DemuxDebugReader.cpp -o pwiz/analysis/demux/DemuxDebugReader.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSNumpress.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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pwiz/data/msdata/.libs/MSNumpress.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 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-Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSNumpress.lo -MD -MP -MF pwiz/data/msdata/.deps/MSNumpress.Tpo -c pwiz/data/msdata/MSNumpress.cpp -o pwiz/data/msdata/MSNumpress.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/examples.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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-Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/examples.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/examples.lo pwiz/data/msdata/examples.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/examples.lo -MD -MP -MF pwiz/data/msdata/.deps/examples.Tpo -c pwiz/data/msdata/examples.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/examples.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/examples.hpp:29, from pwiz/data/msdata/examples.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/examples.lo -MD -MP -MF pwiz/data/msdata/.deps/examples.Tpo -c pwiz/data/msdata/examples.cpp -o pwiz/data/msdata/examples.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZWindow.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZWindow.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZWindow.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/PrecursorMaskCodec.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/PrecursorMaskCodec.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/PrecursorMaskCodec.lo pwiz/analysis/demux/PrecursorMaskCodec.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/PrecursorMaskCodec.lo -MD -MP -MF pwiz/analysis/demux/.deps/PrecursorMaskCodec.Tpo -c pwiz/analysis/demux/PrecursorMaskCodec.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/PrecursorMaskCodec.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/DemuxTypes.hpp:23, from pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from pwiz/analysis/demux/PrecursorMaskCodec.cpp:20: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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pwiz/data/tradata/Diff.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/tradata/Diff.lo pwiz/data/tradata/Diff.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 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-DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/Diff.lo -MD -MP -MF pwiz/data/tradata/.deps/Diff.Tpo -c pwiz/data/tradata/Diff.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/Diff.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" 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-D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/Diff.lo -MD -MP -MF pwiz/data/tradata/.deps/Diff.Tpo -c pwiz/data/tradata/Diff.cpp -o pwiz/data/tradata/Diff.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Smoother.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Smoother.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_Smoother.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/list:62, from ./pwiz/utility/misc/IntegerSet.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ 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's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Digestion.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Digestion.lo pwiz/data/proteome/Digestion.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Digestion.lo -MD -MP -MF pwiz/data/proteome/.deps/Digestion.Tpo -c pwiz/data/proteome/Digestion.cpp -o pwiz/data/proteome/Digestion.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp:28, from pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp:30: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/Reader_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/ChromatogramList_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/ChromatogramList_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/ChromatogramList_mzML.lo pwiz/data/msdata/ChromatogramList_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/ChromatogramList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/ChromatogramList_mzML.Tpo -c pwiz/data/msdata/ChromatogramList_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/ChromatogramList_mzML.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/ChromatogramListBase.hpp:28, from pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from pwiz/data/msdata/ChromatogramList_mzML.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/ChromatogramList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/ChromatogramList_mzML.Tpo -c pwiz/data/msdata/ChromatogramList_mzML.cpp -o pwiz/data/msdata/ChromatogramList_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/MinimumPepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/MinimumPepXML.lo pwiz/data/misc/MinimumPepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/MinimumPepXML.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -o pwiz/data/misc/MinimumPepXML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/SavitzkyGolaySmoother.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/SavitzkyGolaySmoother.lo pwiz/analysis/common/SavitzkyGolaySmoother.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/SavitzkyGolaySmoother.Tpo -c pwiz/analysis/common/SavitzkyGolaySmoother.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/SavitzkyGolaySmoother.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/SavitzkyGolaySmoother.Tpo -c pwiz/analysis/common/SavitzkyGolaySmoother.cpp -o pwiz/analysis/common/SavitzkyGolaySmoother.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 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-MP -MF $depbase.Tpo -c -o pwiz/analysis/proteome_processing/ProteinListFactory.lo pwiz/analysis/proteome_processing/ProteinListFactory.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -o pwiz/analysis/proteome_processing/ProteinListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/Stats.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/math/Stats.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/math/Stats.lo pwiz/utility/math/Stats.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -fPIC -DPIC -o pwiz/utility/math/.libs/Stats.o In file included from pwiz/utility/math/Stats.cpp:26: pwiz/utility/math/Stats.hpp:57:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 57 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/numeric/ublas/fwd.hpp:18, from /usr/include/boost/numeric/ublas/detail/config.hpp:299, from /usr/include/boost/numeric/ublas/exception.hpp:19, from /usr/include/boost/numeric/ublas/storage.hpp:26, from /usr/include/boost/numeric/ublas/vector.hpp:21, from pwiz/utility/math/Stats.hpp:29: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -o pwiz/utility/math/Stats.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionAnalyzer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionAnalyzer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/RegionAnalyzer.lo pwiz/analysis/passive/RegionAnalyzer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionAnalyzer.Tpo -c pwiz/analysis/passive/RegionAnalyzer.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionAnalyzer.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/RegionAnalyzer.hpp:29, from pwiz/analysis/passive/RegionAnalyzer.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionAnalyzer.Tpo -c pwiz/analysis/passive/RegionAnalyzer.cpp -o pwiz/analysis/passive/RegionAnalyzer.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Serializer_Text.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_Text.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Serializer_Text.lo pwiz/data/identdata/Serializer_Text.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_Text.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_Text.Tpo -c pwiz/data/identdata/Serializer_Text.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Serializer_Text.o In file included from pwiz/data/identdata/Serializer_Text.cpp:27: pwiz/data/identdata/TextWriter.hpp: In member function ‘pwiz::identdata::TextWriter& pwiz::identdata::TextWriter::operator()(const pwiz::identdata::IdentData&)’: pwiz/data/identdata/TextWriter.hpp:887:46: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Allocator> std::operator+(const _CharT*, const __cxx11::basic_string<_CharT, _Traits, _Allocator>&) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 887 | ("version: " + mzid.version()); | ^ In file included from /usr/include/c++/13/string:54, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/data/identdata/Serializer_Text.cpp:25: /usr/include/c++/13/bits/basic_string.h:3571:5: note: declared here 3571 | operator+(const _CharT* __lhs, | ^~~~~~~~ pwiz/data/identdata/Serializer_Text.cpp: In member function ‘void pwiz::identdata::Serializer_Text::Impl::setHeaders(const std::vector >&) const’: pwiz/data/identdata/Serializer_Text.cpp:596:36: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 596 | std::bind2nd(std::equal_to(),f)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/string:49: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_Text.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_Text.Tpo -c pwiz/data/identdata/Serializer_Text.cpp -o pwiz/data/identdata/Serializer_Text.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionTIC.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionTIC.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/RegionTIC.lo pwiz/analysis/passive/RegionTIC.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionTIC.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionTIC.Tpo -c pwiz/analysis/passive/RegionTIC.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionTIC.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/RegionTIC.hpp:29, from pwiz/analysis/passive/RegionTIC.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionTIC.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionTIC.Tpo -c pwiz/analysis/passive/RegionTIC.cpp -o pwiz/analysis/passive/RegionTIC.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Serializer_FASTA.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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pwiz/data/proteome/.deps/Serializer_FASTA.Tpo -c pwiz/data/proteome/Serializer_FASTA.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Serializer_FASTA.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 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-DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Serializer_FASTA.lo -MD -MP -MF pwiz/data/proteome/.deps/Serializer_FASTA.Tpo -c pwiz/data/proteome/Serializer_FASTA.cpp -o pwiz/data/proteome/Serializer_FASTA.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Modification.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" 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-DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF pwiz/data/proteome/.deps/Modification.Tpo -c pwiz/data/proteome/Modification.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Modification.o pwiz/data/proteome/Modification.cpp:89:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 89 | auto_ptr formula_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/data/proteome/Peptide.hpp:29, from pwiz/data/proteome/Modification.hpp:30, from pwiz/data/proteome/Modification.cpp:27: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF pwiz/data/proteome/.deps/Modification.Tpo -c pwiz/data/proteome/Modification.cpp -o pwiz/data/proteome/Modification.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeStateCalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/list:62, from ./pwiz/utility/misc/IntegerSet.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeStateCalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/ThresholdFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/ThresholdFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/ThresholdFilter.lo pwiz/analysis/spectrum_processing/ThresholdFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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pwiz/analysis/spectrum_processing/.libs/ThresholdFilter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/spectrum_processing/ThresholdFilter.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/analysis/spectrum_processing/ThresholdFilter.cpp:25: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/misc/FrequencyDataTestData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyDataTestData.Tpo -c pwiz/data/misc/FrequencyDataTestData.cpp -o pwiz/data/misc/FrequencyDataTestData.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_MGF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_MGF.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_MGF.lo pwiz/data/msdata/SpectrumList_MGF.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_MGF.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_MGF.Tpo -c pwiz/data/msdata/SpectrumList_MGF.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_MGF.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/msdata/SpectrumList_MGF.hpp:30, from pwiz/data/msdata/SpectrumList_MGF.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_MGF.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_MGF.Tpo -c pwiz/data/msdata/SpectrumList_MGF.cpp -o pwiz/data/msdata/SpectrumList_MGF.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/ChromatogramList_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Thermo/.libs/ChromatogramList_Thermo.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/ChromatogramListBase.hpp:28, from pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp:29, from pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp:27: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/ChromatogramList_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp -o pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Serializer_pepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_pepXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Serializer_pepXML.lo pwiz/data/identdata/Serializer_pepXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_pepXML.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_pepXML.Tpo -c pwiz/data/identdata/Serializer_pepXML.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Serializer_pepXML.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/identdata/Serializer_pepXML.cpp:33: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from pwiz/data/identdata/IdentData.hpp:29, from pwiz/data/identdata/Serializer_pepXML.hpp:27, from pwiz/data/identdata/Serializer_pepXML.cpp:25: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_pepXML.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_pepXML.Tpo -c pwiz/data/identdata/Serializer_pepXML.cpp -o pwiz/data/identdata/Serializer_pepXML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/MZRTField.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/MZRTField.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/MZRTField.lo pwiz/analysis/peakdetect/MZRTField.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/Chemistry.lo -MD -MP -MF pwiz/utility/chemistry/.deps/Chemistry.Tpo -c pwiz/utility/chemistry/Chemistry.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/Chemistry.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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pwiz/utility/chemistry/Chemistry.lo -MD -MP -MF pwiz/utility/chemistry/.deps/Chemistry.Tpo -c pwiz/utility/chemistry/Chemistry.cpp -o pwiz/utility/chemistry/Chemistry.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Diff.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Diff.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Diff.lo pwiz/data/identdata/Diff.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Diff.lo -MD -MP -MF pwiz/data/identdata/.deps/Diff.Tpo -c pwiz/data/identdata/Diff.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Diff.o In file included from pwiz/data/identdata/Diff.cpp:26: pwiz/data/identdata/TextWriter.hpp: In member function ‘pwiz::identdata::TextWriter& pwiz::identdata::TextWriter::operator()(const pwiz::identdata::IdentData&)’: pwiz/data/identdata/TextWriter.hpp:887:46: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Allocator> std::operator+(const _CharT*, const __cxx11::basic_string<_CharT, _Traits, _Allocator>&) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 887 | ("version: " + mzid.version()); | ^ In file included from /usr/include/c++/13/string:54, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from pwiz/data/identdata/IdentData.hpp:29, from pwiz/data/identdata/Diff.hpp:28, from pwiz/data/identdata/Diff.cpp:25: /usr/include/c++/13/bits/basic_string.h:3571:5: note: declared here 3571 | operator+(const _CharT* __lhs, | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Diff.lo -MD -MP -MF pwiz/data/identdata/.deps/Diff.Tpo -c pwiz/data/identdata/Diff.cpp -o pwiz/data/identdata/Diff.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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$depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Filter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Filter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp:27: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from ./pwiz/data/common/cv.hpp:35, from pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Index_mzML.Tpo -c pwiz/data/msdata/Index_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Index_mzML.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/Index_mzML.hpp:28, from pwiz/data/msdata/Index_mzML.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/ParameterEstimator.lo pwiz/analysis/frequency/ParameterEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/ParameterEstimator.o In file included from pwiz/analysis/frequency/ParameterEstimator.cpp:24: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | static std::auto_ptr create(const Function& function, | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/numeric/ublas/fwd.hpp:18, from /usr/include/boost/numeric/ublas/detail/config.hpp:299, from /usr/include/boost/numeric/ublas/exception.hpp:19, from /usr/include/boost/numeric/ublas/storage.hpp:26, from /usr/include/boost/numeric/ublas/vector.hpp:21, from pwiz/analysis/frequency/ParametrizedFunction.hpp:32, from pwiz/analysis/frequency/ParameterEstimator.hpp:29: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp:65:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr ParameterEstimator::create(const Function& function, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::ParameterEstimator::create(const Function&, const Data&, const Parameters&)’: pwiz/analysis/frequency/ParameterEstimator.cpp:69:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | return auto_ptr(new ParameterEstimatorImpl(function, data, initialEstimate)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -o pwiz/analysis/frequency/ParameterEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorSimple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorSimple.lo pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./pwiz/data/misc/FrequencyData.hpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:45:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 45 | static std::auto_ptr create(Type type = Parabola, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:63:15: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | PWIZ_API_DECL auto_ptr FrequencyEstimatorSimple::create(Type type, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::FrequencyEstimatorSimple::create(Type, unsigned int)’: pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:66:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 66 | return auto_ptr( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -o pwiz/analysis/frequency/FrequencyEstimatorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_Filter.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_Filter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp:27: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from ./pwiz/data/common/cv.hpp:35, from pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_Filter.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/PepXMLCat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/PepXMLCat.lo pwiz/analysis/passive/PepXMLCat.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/PepXMLCat.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -o pwiz/analysis/passive/PepXMLCat.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/FeatureDetector.hpp:29, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp:28, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from ./pwiz/data/misc/CalibrationParameters.hpp:29, from ./pwiz/data/misc/PeakData.hpp:28, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureDetector.hpp:27: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ which has internal linkage [-Wsubobject-linkage] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of ‘struct pwiz::analysis::MZRTField’: ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: ‘pwiz::analysis::MZRTField’ has a base ‘std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >’ which has internal linkage [-Wsubobject-linkage] libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/MS2Deisotoper.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/MS2Deisotoper.lo pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2Deisotoper.Tpo -c pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/MS2Deisotoper.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/analysis/common/DataFilter.hpp:28, from pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp:27, from pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp: In member function ‘void pwiz::analysis::{anonymous}::FilterSpectrum::DeIsotopeLowRes()’: pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp:187:83: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 187 | intensities_.erase(remove_if(intensities_.begin(), intensities_.end(), bind2nd(less(), 0)), intensities_.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from ./pwiz/utility/misc/BinaryData.hpp:30: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp:188:74: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 188 | massList_.erase(remove_if(massList_.begin(), massList_.end(), bind2nd(less(), 0)), massList_.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/MS2Deisotoper.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2Deisotoper.Tpo -c pwiz/analysis/spectrum_processing/MS2Deisotoper.cpp -o pwiz/analysis/spectrum_processing/MS2Deisotoper.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MetadataFixer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_MetadataFixer.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MetadataFixer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/Reader_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/Reader_Waters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Waters/Reader_Waters.lo pwiz/data/vendor_readers/Waters/Reader_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/Reader_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/Reader_Waters.Tpo -c pwiz/data/vendor_readers/Waters/Reader_Waters.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Waters/.libs/Reader_Waters.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/Waters/Reader_Waters.hpp:28, from pwiz/data/vendor_readers/Waters/Reader_Waters.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/Reader_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/Reader_Waters.Tpo -c pwiz/data/vendor_readers/Waters/Reader_Waters.cpp -o pwiz/data/vendor_readers/Waters/Reader_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumInfo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumInfo.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumInfo.lo pwiz/data/msdata/SpectrumInfo.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumInfo.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumInfo.Tpo -c pwiz/data/msdata/SpectrumInfo.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumInfo.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/SpectrumInfo.hpp:29, from pwiz/data/msdata/SpectrumInfo.cpp:27: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumInfo.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumInfo.Tpo -c pwiz/data/msdata/SpectrumInfo.cpp -o pwiz/data/msdata/SpectrumInfo.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_flat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peptideid/PeptideID_flat.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peptideid/PeptideID_flat.lo pwiz/analysis/peptideid/PeptideID_flat.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 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pwiz/analysis/peptideid/PeptideID_flat.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_flat.Tpo -c pwiz/analysis/peptideid/PeptideID_flat.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideID_flat.o pwiz/analysis/peptideid/PeptideID_flat.cpp: In constructor ‘pwiz::peptideid::PeptideID_flat::Impl::Impl(std::istream*, boost::shared_ptr)’: pwiz/analysis/peptideid/PeptideID_flat.cpp:117:23: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 117 | filename.empty(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/string:54, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/analysis/peptideid/PeptideID_flat.cpp:25: /usr/include/c++/13/bits/basic_string.h:1220:7: note: declared here 1220 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peptideid/PeptideID_flat.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_flat.Tpo -c pwiz/analysis/peptideid/PeptideID_flat.cpp -o pwiz/analysis/peptideid/PeptideID_flat.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/examples.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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-Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/examples.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/examples.lo pwiz/data/identdata/examples.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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pwiz/data/identdata/.deps/examples.Tpo -c pwiz/data/identdata/examples.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/examples.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/examples.lo -MD -MP -MF pwiz/data/identdata/.deps/examples.Tpo -c pwiz/data/identdata/examples.cpp -o pwiz/data/identdata/examples.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./pwiz/data/misc/FrequencyData.hpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:53:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 53 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:27: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 43 | static std::auto_ptr create(); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:60:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 60 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::FrequencyEstimatorPhysicalModel::create(const Config&)’: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:63:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 63 | return auto_ptr( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In member function ‘virtual pwiz::data::peakdata::Peak FrequencyEstimatorPhysicalModelImpl::estimate(const pwiz::frequency::FrequencyEstimator::FrequencyData&, const pwiz::frequency::FrequencyEstimator::Peak&) const’: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:100:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 100 | auto_ptr estimator = TruncatedLorentzianEstimator::create(); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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>/dev/null 2>&1 depbase=`echo pwiz/utility/misc/IntegerSet.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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-I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/IntegerSet.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/IntegerSet.lo pwiz/utility/misc/IntegerSet.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/IntegerSet.lo -MD -MP -MF pwiz/utility/misc/.deps/IntegerSet.Tpo -c pwiz/utility/misc/IntegerSet.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/IntegerSet.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/IntegerSet.lo -MD -MP -MF pwiz/utility/misc/.deps/IntegerSet.Tpo -c pwiz/utility/misc/IntegerSet.cpp -o pwiz/utility/misc/IntegerSet.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.lo pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_SavitzkyGolaySmoother.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_SavitzkyGolaySmoother.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp:30, from pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.cpp:27: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/list:62, from ./pwiz/utility/misc/IntegerSet.hpp:28, from pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_SavitzkyGolaySmoother.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/MSXDemultiplexer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/MSXDemultiplexer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/MSXDemultiplexer.lo pwiz/analysis/demux/MSXDemultiplexer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/MSXDemultiplexer.lo -MD -MP -MF pwiz/analysis/demux/.deps/MSXDemultiplexer.Tpo -c pwiz/analysis/demux/MSXDemultiplexer.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/MSXDemultiplexer.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/DemuxTypes.hpp:23, from pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from pwiz/analysis/demux/IDemultiplexer.hpp:23, from pwiz/analysis/demux/MSXDemultiplexer.hpp:23, from pwiz/analysis/demux/MSXDemultiplexer.cpp:20: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/MSXDemultiplexer.lo -MD -MP -MF pwiz/analysis/demux/.deps/MSXDemultiplexer.Tpo -c pwiz/analysis/demux/MSXDemultiplexer.cpp -o pwiz/analysis/demux/MSXDemultiplexer.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/Version.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/Version.lo pwiz/analysis/Version.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/Version.lo -MD -MP -MF pwiz/analysis/.deps/Version.Tpo -c pwiz/analysis/Version.cpp -fPIC -DPIC -o pwiz/analysis/.libs/Version.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-D_FORTIFY_SOURCE=3 -MT pwiz/analysis/Version.lo -MD -MP -MF pwiz/analysis/.deps/Version.Tpo -c pwiz/analysis/Version.cpp -o pwiz/analysis/Version.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/MemoryIndex.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/MemoryIndex.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/common/MemoryIndex.lo pwiz/data/common/MemoryIndex.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/MemoryIndex.lo -MD -MP -MF pwiz/data/common/.deps/MemoryIndex.Tpo -c pwiz/data/common/MemoryIndex.cpp -fPIC -DPIC -o pwiz/data/common/.libs/MemoryIndex.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/MemoryIndex.lo -MD -MP -MF pwiz/data/common/.deps/MemoryIndex.Tpo -c pwiz/data/common/MemoryIndex.cpp -o pwiz/data/common/MemoryIndex.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorMassFilter.Tpo -c pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/PrecursorMassFilter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorMassFilter.Tpo -c pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp -o pwiz/analysis/spectrum_processing/PrecursorMassFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/Reader_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Thermo/.libs/Reader_Thermo.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp:29, from pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo -MD -MP -MF pwiz/data/vendor_readers/Thermo/.deps/Reader_Thermo.Tpo -c pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp -o pwiz/data/vendor_readers/Thermo/Reader_Thermo.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/SHA1Calculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/SHA1Calculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/SHA1Calculator.lo pwiz/utility/misc/SHA1Calculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/SHA1Calculator.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1Calculator.Tpo -c pwiz/utility/misc/SHA1Calculator.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/SHA1Calculator.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/SHA1Calculator.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1Calculator.Tpo -c pwiz/utility/misc/SHA1Calculator.cpp -o pwiz/utility/misc/SHA1Calculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetector.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFamilyDetector.lo pwiz/analysis/peakdetect/PeakFamilyDetector.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetector.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetector.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetector.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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/usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFamilyDetector.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetector.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetector.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetector.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/DelimReader.lo -MD -MP -MF pwiz/data/identdata/.deps/DelimReader.Tpo -c pwiz/data/identdata/DelimReader.cpp -o pwiz/data/identdata/DelimReader.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/References.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/References.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/References.lo pwiz/data/msdata/References.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/References.lo -MD -MP -MF pwiz/data/msdata/.deps/References.Tpo -c pwiz/data/msdata/References.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/References.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/References.hpp:29, from pwiz/data/msdata/References.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/References.lo -MD -MP -MF pwiz/data/msdata/.deps/References.Tpo -c pwiz/data/msdata/References.cpp -o pwiz/data/msdata/References.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/MetadataReporter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MetadataReporter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/MetadataReporter.lo pwiz/analysis/passive/MetadataReporter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MetadataReporter.lo -MD -MP -MF pwiz/analysis/passive/.deps/MetadataReporter.Tpo -c pwiz/analysis/passive/MetadataReporter.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/MetadataReporter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/MetadataReporter.hpp:29, from pwiz/analysis/passive/MetadataReporter.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MetadataReporter.lo -MD -MP -MF pwiz/analysis/passive/.deps/MetadataReporter.Tpo -c pwiz/analysis/passive/MetadataReporter.cpp -o pwiz/analysis/passive/MetadataReporter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumListFactory.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumListFactory.lo pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumListFactory.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumListFactory.Tpo -c pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumListFactory.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumListFactory.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumListFactory.Tpo -c pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp -o pwiz/analysis/spectrum_processing/SpectrumListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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"/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/proteome_processing/ProteinList_Filter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/proteome_processing/ProteinList_Filter.lo pwiz/analysis/proteome_processing/ProteinList_Filter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/proteome_processing/ProteinList_Filter.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_Filter.Tpo -c pwiz/analysis/proteome_processing/ProteinList_Filter.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinList_Filter.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/proteome_processing/ProteinList_Filter.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_Filter.Tpo -c pwiz/analysis/proteome_processing/ProteinList_Filter.cpp -o pwiz/analysis/proteome_processing/ProteinList_Filter.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/SpectrumList_ABI.Tpo -c pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/.libs/SpectrumList_ABI.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp:24, from pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/SpectrumList_ABI.Tpo -c pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp -o pwiz/data/vendor_readers/ABI/SpectrumList_ABI.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/MSDataCache.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MSDataCache.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/MSDataCache.lo pwiz/analysis/passive/MSDataCache.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MSDataCache.lo -MD -MP -MF pwiz/analysis/passive/.deps/MSDataCache.Tpo -c pwiz/analysis/passive/MSDataCache.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/MSDataCache.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumInfo.hpp:29, from pwiz/analysis/passive/MSDataCache.hpp:29, from pwiz/analysis/passive/MSDataCache.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MSDataCache.lo -MD -MP -MF pwiz/analysis/passive/.deps/MSDataCache.Tpo -c pwiz/analysis/passive/MSDataCache.cpp -o pwiz/analysis/passive/MSDataCache.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/SpectrumTable.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/SpectrumTable.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/SpectrumTable.lo pwiz/analysis/passive/SpectrumTable.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/SpectrumTable.lo -MD -MP -MF pwiz/analysis/passive/.deps/SpectrumTable.Tpo -c pwiz/analysis/passive/SpectrumTable.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/SpectrumTable.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/SpectrumTable.hpp:29, from pwiz/analysis/passive/SpectrumTable.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/SpectrumTable.lo -MD -MP -MF pwiz/analysis/passive/.deps/SpectrumTable.Tpo -c pwiz/analysis/passive/SpectrumTable.cpp -o pwiz/analysis/passive/SpectrumTable.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/Reader_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UIMF/.libs/Reader_UIMF.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp:28, from pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/Reader_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp -o pwiz/data/vendor_readers/UIMF/Reader_UIMF.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFinder.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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$depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFinder.lo pwiz/analysis/peakdetect/PeakFinder.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFinder.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFinder.Tpo -c pwiz/analysis/peakdetect/PeakFinder.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFinder.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFinder.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFinder.Tpo -c pwiz/analysis/peakdetect/PeakFinder.cpp -o pwiz/analysis/peakdetect/PeakFinder.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/examples.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/examples.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/examples.lo pwiz/data/proteome/examples.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/examples.lo -MD -MP -MF pwiz/data/proteome/.deps/examples.Tpo -c pwiz/data/proteome/examples.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/examples.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/examples.lo -MD -MP -MF pwiz/data/proteome/.deps/examples.Tpo -c pwiz/data/proteome/examples.cpp -o pwiz/data/proteome/examples.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 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-Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/MSData.lo pwiz/data/msdata/MSData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSData.lo -MD -MP -MF pwiz/data/msdata/.deps/MSData.Tpo -c pwiz/data/msdata/MSData.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/MSData.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/MSData.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSData.lo -MD -MP -MF pwiz/data/msdata/.deps/MSData.Tpo -c pwiz/data/msdata/MSData.cpp -o pwiz/data/msdata/MSData.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeCalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeCalculator.lo pwiz/utility/chemistry/IsotopeCalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeCalculator.Tpo -c pwiz/utility/chemistry/IsotopeCalculator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeCalculator.o In file included from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeCalculator.hpp:29: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/utility/chemistry/IsotopeCalculator.cpp:27: pwiz/utility/chemistry/IsotopeTable.hpp:50:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 50 | std::auto_ptr impl_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeCalculator.Tpo -c pwiz/utility/chemistry/IsotopeCalculator.cpp -o pwiz/utility/chemistry/IsotopeCalculator.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ExtendedReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ExtendedReaderList.lo pwiz/data/vendor_readers/ExtendedReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF pwiz/data/vendor_readers/.deps/ExtendedReaderList.Tpo -c pwiz/data/vendor_readers/ExtendedReaderList.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/.libs/ExtendedReaderList.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from ./pwiz/data/msdata/DefaultReaderList.hpp:29, from pwiz/data/vendor_readers/ExtendedReaderList.hpp:29, from pwiz/data/vendor_readers/ExtendedReaderList.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF pwiz/data/vendor_readers/.deps/ExtendedReaderList.Tpo -c pwiz/data/vendor_readers/ExtendedReaderList.cpp -o pwiz/data/vendor_readers/ExtendedReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorNaive.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorNaive.lo pwiz/analysis/frequency/PeakDetectorNaive.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorNaive.Tpo -c pwiz/analysis/frequency/PeakDetectorNaive.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorNaive.o In file included from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./pwiz/data/misc/FrequencyData.hpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.hpp:50:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 50 | static std::auto_ptr create(double noiseFactor = 5, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.cpp:56:15: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 56 | PWIZ_API_DECL auto_ptr PeakDetectorNaive::create(double noiseFactor, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::PeakDetectorNaive::create(double, unsigned int)’: pwiz/analysis/frequency/PeakDetectorNaive.cpp:59:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 59 | return auto_ptr(new PeakDetectorNaiveImpl(noiseFactor, detectionRadius)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorNaive.Tpo -c pwiz/analysis/frequency/PeakDetectorNaive.cpp -o pwiz/analysis/frequency/PeakDetectorNaive.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Reader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Reader.lo -MD -MP -MF pwiz/data/proteome/.deps/Reader.Tpo -c pwiz/data/proteome/Reader.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Reader.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Reader.lo -MD -MP -MF pwiz/data/proteome/.deps/Reader.Tpo -c pwiz/data/proteome/Reader.cpp -o pwiz/data/proteome/Reader.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/FrequencyData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/FrequencyData.lo pwiz/data/misc/FrequencyData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyData.Tpo -c pwiz/data/misc/FrequencyData.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/FrequencyData.o In file included from pwiz/data/misc/FrequencyData.cpp:26: pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from pwiz/data/misc/FrequencyData.hpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyData.Tpo -c pwiz/data/misc/FrequencyData.cpp -o pwiz/data/misc/FrequencyData.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ZeroSamplesFilter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ZeroSamplesFilter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp:30, from pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp:27: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/list:62, from ./pwiz/utility/misc/IntegerSet.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ZeroSamplesFilter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/BinaryData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/BinaryData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/BinaryData.lo pwiz/utility/misc/BinaryData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/BinaryData.lo -MD -MP -MF pwiz/utility/misc/.deps/BinaryData.Tpo -c pwiz/utility/misc/BinaryData.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/BinaryData.o In file included from pwiz/utility/misc/BinaryData.cpp:24: pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/BinaryData.lo -MD -MP -MF pwiz/utility/misc/.deps/BinaryData.Tpo -c pwiz/utility/misc/BinaryData.cpp -o pwiz/utility/misc/BinaryData.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Serializer_protXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_protXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Serializer_protXML.lo pwiz/data/identdata/Serializer_protXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_protXML.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_protXML.Tpo -c pwiz/data/identdata/Serializer_protXML.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Serializer_protXML.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/identdata/Serializer_protXML.cpp:36: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from pwiz/data/identdata/IdentData.hpp:29, from pwiz/data/identdata/Serializer_protXML.hpp:29, from pwiz/data/identdata/Serializer_protXML.cpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_protXML.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_protXML.Tpo -c pwiz/data/identdata/Serializer_protXML.cpp -o pwiz/data/identdata/Serializer_protXML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/MZTolerance.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/MZTolerance.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/MZTolerance.lo pwiz/utility/chemistry/MZTolerance.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/MZTolerance.lo -MD -MP -MF pwiz/utility/chemistry/.deps/MZTolerance.Tpo -c pwiz/utility/chemistry/MZTolerance.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/MZTolerance.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/MZTolerance.lo -MD -MP -MF pwiz/utility/chemistry/.deps/MZTolerance.Tpo -c pwiz/utility/chemistry/MZTolerance.cpp -o pwiz/utility/chemistry/MZTolerance.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.lo pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.lo -MD -MP -MF pwiz/data/vendor_readers/UNIFI/.deps/Reader_UNIFI.Tpo -c pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UNIFI/.libs/Reader_UNIFI.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp:28, from pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.lo -MD -MP -MF pwiz/data/vendor_readers/UNIFI/.deps/Reader_UNIFI.Tpo -c pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.cpp -o pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/ChromatogramList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Agilent/.libs/ChromatogramList_Agilent.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/ChromatogramListBase.hpp:28, from pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp:28, from pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/ChromatogramList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp -o pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2NoiseFilter.Tpo -c pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/MS2NoiseFilter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp:28, from pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp: In constructor ‘pwiz::analysis::{anonymous}::FilterSpectrum::FilterSpectrum(const pwiz::analysis::MS2NoiseFilter::Config&, pwiz::msdata::SpectrumPtr)’: pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp:222:83: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 222 | intensities_.erase(remove_if(intensities_.begin(), intensities_.end(), bind2nd(less(), 0)), intensities_.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from ./pwiz/utility/misc/BinaryData.hpp:30: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp:223:74: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 223 | massList_.erase(remove_if(massList_.begin(), massList_.end(), bind2nd(less(), 0)), massList_.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/CVTranslator.lo -MD -MP -MF pwiz/data/common/.deps/CVTranslator.Tpo -c pwiz/data/common/CVTranslator.cpp -fPIC -DPIC -o pwiz/data/common/.libs/CVTranslator.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/CVTranslator.lo -MD -MP -MF pwiz/data/common/.deps/CVTranslator.Tpo -c pwiz/data/common/CVTranslator.cpp -o pwiz/data/common/CVTranslator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakPicker.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakPicker.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/list:62, from ./pwiz/utility/misc/IntegerSet.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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--tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/IO.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/IO.lo pwiz/data/identdata/IO.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/IO.lo -MD -MP -MF pwiz/data/identdata/.deps/IO.Tpo -c pwiz/data/identdata/IO.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/IO.o In file included from pwiz/data/identdata/IO.cpp:28: pwiz/data/identdata/TextWriter.hpp: In member function ‘pwiz::identdata::TextWriter& pwiz::identdata::TextWriter::operator()(const pwiz::identdata::IdentData&)’: pwiz/data/identdata/TextWriter.hpp:887:46: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Allocator> std::operator+(const _CharT*, const __cxx11::basic_string<_CharT, _Traits, _Allocator>&) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 887 | ("version: " + mzid.version()); | ^ In file included from /usr/include/c++/13/string:54, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from pwiz/data/identdata/IdentData.hpp:29, from pwiz/data/identdata/IO.hpp:27, from pwiz/data/identdata/IO.cpp:26: /usr/include/c++/13/bits/basic_string.h:3571:5: note: declared here 3571 | operator+(const _CharT* __lhs, | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/IO.lo -MD -MP -MF pwiz/data/identdata/.deps/IO.Tpo -c pwiz/data/identdata/IO.cpp -o pwiz/data/identdata/IO.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_mzXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_mzXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_mzXML.lo pwiz/data/msdata/Serializer_mzXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_mzXML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzXML.Tpo -c pwiz/data/msdata/Serializer_mzXML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_mzXML.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/Serializer_mzXML.hpp:29, from pwiz/data/msdata/Serializer_mzXML.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)’: pwiz/data/msdata/Serializer_mzXML.cpp:127:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 127 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name)); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from ./pwiz/utility/misc/Filesystem.hpp:37, from pwiz/data/msdata/Serializer_mzXML.cpp:33: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:128:65: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 128 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:135:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 135 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:142:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 142 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ./pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/msdata/Serializer_mzXML.cpp:142:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 142 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:144:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 144 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 150 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/msdata/Serializer_mzXML.cpp:150:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 150 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:156:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 156 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/msdata/Serializer_mzXML.cpp:156:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 156 | return bfs::basename(bfs::path(sf.location).leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:161:44: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 161 | if (bfs::path(sf.location).leaf() == "AcqData" && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/msdata/Serializer_mzXML.cpp:165:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 165 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/msdata/Serializer_mzXML.cpp:165:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 165 | return bfs::basename(bfs::path(sf.location).parent_path().leaf()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:173:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 173 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:182:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 182 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:188:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 188 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp:194:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 194 | return bfs::basename(sf.name); | ~~~~~~~~~~~~~^~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)’: pwiz/data/msdata/Serializer_mzXML.cpp:836:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 836 | string fileExtension = bal::to_lower_copy(bfs::extension(name)); | ~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)’: pwiz/data/msdata/Serializer_mzXML.cpp:1091:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1091 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf()); | ~~~~~~~~~~~~~~~~~~~^~ ./pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/msdata/Serializer_mzXML.cpp:1093:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 1093 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 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pwiz/data/msdata/Serializer_mzXML.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/DefaultReaderList.lo pwiz/data/identdata/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/identdata/.deps/DefaultReaderList.Tpo -c pwiz/data/identdata/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/DefaultReaderList.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/identdata/.deps/DefaultReaderList.Tpo -c pwiz/data/identdata/DefaultReaderList.cpp -o pwiz/data/identdata/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilter.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilter.o In file included from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./pwiz/data/misc/FrequencyData.hpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:109:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 109 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:116:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 116 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp: In static member function ‘static std::auto_ptr pwiz::frequency::PeakDetectorMatchedFilter::create(const Config&)’: pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:119:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 119 | return auto_ptr(new PeakDetectorMatchedFilterImpl(config)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp -o pwiz/analysis/frequency/PeakDetectorMatchedFilter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/ExtraZeroSamplesFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/ExtraZeroSamplesFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/ExtraZeroSamplesFilter.lo pwiz/analysis/common/ExtraZeroSamplesFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/ExtraZeroSamplesFilter.lo -MD -MP -MF pwiz/analysis/common/.deps/ExtraZeroSamplesFilter.Tpo -c pwiz/analysis/common/ExtraZeroSamplesFilter.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/ExtraZeroSamplesFilter.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/ExtraZeroSamplesFilter.lo -MD -MP -MF pwiz/analysis/common/.deps/ExtraZeroSamplesFilter.Tpo -c pwiz/analysis/common/ExtraZeroSamplesFilter.cpp -o pwiz/analysis/common/ExtraZeroSamplesFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/SpectrumList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Bruker/.libs/SpectrumList_Bruker.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp:27, from pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/SpectrumList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/utility/minimxml/SAXParser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 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3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/minimxml/SAXParser.lo -MD -MP -MF pwiz/utility/minimxml/.deps/SAXParser.Tpo -c pwiz/utility/minimxml/SAXParser.cpp -fPIC -DPIC -o pwiz/utility/minimxml/.libs/SAXParser.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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pwiz/utility/minimxml/SAXParser.lo -MD -MP -MF pwiz/utility/minimxml/.deps/SAXParser.Tpo -c pwiz/utility/minimxml/SAXParser.cpp -o pwiz/utility/minimxml/SAXParser.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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-Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_IonMobility.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_IonMobility.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_IonMobility.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/IdentDataFile.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/IdentDataFile.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/IdentDataFile.lo pwiz/data/identdata/IdentDataFile.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/IdentDataFile.lo -MD -MP -MF pwiz/data/identdata/.deps/IdentDataFile.Tpo -c pwiz/data/identdata/IdentDataFile.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/IdentDataFile.o In file included from pwiz/data/identdata/IdentDataFile.cpp:26: pwiz/data/identdata/TextWriter.hpp: In member function ‘pwiz::identdata::TextWriter& pwiz::identdata::TextWriter::operator()(const pwiz::identdata::IdentData&)’: pwiz/data/identdata/TextWriter.hpp:887:46: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Allocator> std::operator+(const _CharT*, const __cxx11::basic_string<_CharT, _Traits, _Allocator>&) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 887 | ("version: " + mzid.version()); | ^ In file included from /usr/include/c++/13/string:54, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from pwiz/data/identdata/IdentData.hpp:29, from pwiz/data/identdata/IdentDataFile.hpp:29, from pwiz/data/identdata/IdentDataFile.cpp:25: /usr/include/c++/13/bits/basic_string.h:3571:5: note: declared here 3571 | operator+(const _CharT* __lhs, | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/IdentDataFile.lo -MD -MP -MF pwiz/data/identdata/.deps/IdentDataFile.Tpo -c pwiz/data/identdata/IdentDataFile.cpp -o pwiz/data/identdata/IdentDataFile.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Demux.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Demux.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp:23, from pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:23: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:22: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp: In function ‘pwiz::analysis::SpectrumList_Demux::Params::optimizationToString[abi:cxx11](pwiz::analysis::SpectrumList_Demux::Params::Optimization)’: pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:96: warning: function may return address of local variable [-Wreturn-local-addr] 200 | return enumToString(opt, kOptimizationStrings); | ^ pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:70: note: declared here 200 | return enumToString(opt, kOptimizationStrings); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Demux.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_Demux.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_mzML.lo pwiz/data/msdata/Serializer_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzML.Tpo -c pwiz/data/msdata/Serializer_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_mzML.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/Serializer_mzML.hpp:29, from pwiz/data/msdata/Serializer_mzML.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzML.Tpo -c pwiz/data/msdata/Serializer_mzML.cpp -o pwiz/data/msdata/Serializer_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Pep2MzIdent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Pep2MzIdent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Pep2MzIdent.lo pwiz/data/identdata/Pep2MzIdent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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/<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Pep2MzIdent.lo -MD -MP -MF pwiz/data/identdata/.deps/Pep2MzIdent.Tpo -c pwiz/data/identdata/Pep2MzIdent.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Pep2MzIdent.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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pwiz/data/identdata/Pep2MzIdent.lo -MD -MP -MF pwiz/data/identdata/.deps/Pep2MzIdent.Tpo -c pwiz/data/identdata/Pep2MzIdent.cpp -o pwiz/data/identdata/Pep2MzIdent.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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$depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/Reader_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Shimadzu/.libs/Reader_Shimadzu.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp:28, from pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/Reader_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp -o pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionSIC.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionSIC.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/RegionSIC.lo pwiz/analysis/passive/RegionSIC.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionSIC.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSIC.Tpo -c pwiz/analysis/passive/RegionSIC.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionSIC.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/RegionSIC.hpp:29, from pwiz/analysis/passive/RegionSIC.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RegionSIC.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSIC.Tpo -c pwiz/analysis/passive/RegionSIC.cpp -o pwiz/analysis/passive/RegionSIC.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_LockmassRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_LockmassRefiner.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_LockmassRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RunSummary.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RunSummary.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/RunSummary.lo pwiz/analysis/passive/RunSummary.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RunSummary.lo -MD -MP -MF pwiz/analysis/passive/.deps/RunSummary.Tpo -c pwiz/analysis/passive/RunSummary.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RunSummary.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/RunSummary.hpp:28, from pwiz/analysis/passive/RunSummary.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/RunSummary.lo -MD -MP -MF pwiz/analysis/passive/.deps/RunSummary.Tpo -c pwiz/analysis/passive/RunSummary.cpp -o pwiz/analysis/passive/RunSummary.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRefine.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRefine.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp:29: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/ChromatogramList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Shimadzu/.libs/ChromatogramList_Shimadzu.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/ChromatogramListBase.hpp:28, from pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp:28, from pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/ChromatogramList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp -o pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/ZeroSampleFiller.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/ZeroSampleFiller.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/ZeroSampleFiller.lo pwiz/analysis/common/ZeroSampleFiller.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/ZeroSampleFiller.lo -MD -MP -MF pwiz/analysis/common/.deps/ZeroSampleFiller.Tpo -c pwiz/analysis/common/ZeroSampleFiller.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/ZeroSampleFiller.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/ZeroSampleFiller.lo -MD -MP -MF pwiz/analysis/common/.deps/ZeroSampleFiller.Tpo -c pwiz/analysis/common/ZeroSampleFiller.cpp -o pwiz/analysis/common/ZeroSampleFiller.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/MSIHandler.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/utility/misc/MSIHandler.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/MSIHandler.lo -MD -MP -MF pwiz/utility/misc/.deps/MSIHandler.Tpo -c pwiz/utility/misc/MSIHandler.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/MSIHandler.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" 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-fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/MSIHandler.lo -MD -MP -MF pwiz/utility/misc/.deps/MSIHandler.Tpo -c pwiz/utility/misc/MSIHandler.cpp -o pwiz/utility/misc/MSIHandler.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/LegacyAdapter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/LegacyAdapter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/LegacyAdapter.lo pwiz/data/msdata/LegacyAdapter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/LegacyAdapter.lo -MD -MP -MF pwiz/data/msdata/.deps/LegacyAdapter.Tpo -c pwiz/data/msdata/LegacyAdapter.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/LegacyAdapter.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/LegacyAdapter.hpp:30, from pwiz/data/msdata/LegacyAdapter.cpp:27: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/LegacyAdapter.lo -MD -MP -MF pwiz/data/msdata/.deps/LegacyAdapter.Tpo -c pwiz/data/msdata/LegacyAdapter.cpp -o pwiz/data/msdata/LegacyAdapter.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/MSDataMerger.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSDataMerger.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/MSDataMerger.lo pwiz/data/msdata/MSDataMerger.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSDataMerger.lo -MD -MP -MF pwiz/data/msdata/.deps/MSDataMerger.Tpo -c pwiz/data/msdata/MSDataMerger.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/MSDataMerger.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/MSDataMerger.hpp:27, from pwiz/data/msdata/MSDataMerger.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/MSDataMerger.lo -MD -MP -MF pwiz/data/msdata/.deps/MSDataMerger.Tpo -c pwiz/data/msdata/MSDataMerger.cpp -o pwiz/data/msdata/MSDataMerger.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker_Detail.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker_Detail.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp:27, from pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp:23: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp:25: pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp: In function ‘pwiz::msdata::detail::Bruker::Reader_Bruker_Format pwiz::msdata::detail::Bruker::format(const std::string&)’: pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp:50:54: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 50 | std::string leaf = BFS_STRING(sourcePath.leaf()); | ~~~~~~~~~~~~~~~^~ ./pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ./pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp:52:65: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 52 | if (leaf == "fid" && !bfs::exists(sourcePath.branch_path() / "analysis.baf")) | ~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp:54:26: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 54 | else if(extension(sourcePath) == ".u2") | ~~~~~~~~~^~~~~~~~~~~~ In file included from ./pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp:85:44: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 85 | if (BFS_STRING(itr->path().leaf())[0] == '.') // HACK: skip ".svn" | ~~~~~~~~~~~~~~~~^~ ./pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp -o pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/ProteomeData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/ProteomeData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/ProteomeData.lo pwiz/data/proteome/ProteomeData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/ProteomeData.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteomeData.Tpo -c pwiz/data/proteome/ProteomeData.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/ProteomeData.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 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pwiz/analysis/common/LocalMaximumPeakDetector.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/LocalMaximumPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/LocalMaximumPeakDetector.Tpo -c pwiz/analysis/common/LocalMaximumPeakDetector.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/LocalMaximumPeakDetector.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/common/LocalMaximumPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/LocalMaximumPeakDetector.Tpo -c pwiz/analysis/common/LocalMaximumPeakDetector.cpp -o pwiz/analysis/common/LocalMaximumPeakDetector.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/SpectrumList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Agilent/.libs/SpectrumList_Agilent.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp:28, from pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/SpectrumList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp -o pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/MSDataAnalyzer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MSDataAnalyzer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/MSDataAnalyzer.lo pwiz/analysis/passive/MSDataAnalyzer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MSDataAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/MSDataAnalyzer.Tpo -c pwiz/analysis/passive/MSDataAnalyzer.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/MSDataAnalyzer.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/MSDataAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/MSDataAnalyzer.Tpo -c pwiz/analysis/passive/MSDataAnalyzer.cpp -o pwiz/analysis/passive/MSDataAnalyzer.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZRefiner.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp:53, from pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_XICGenerator.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_XICGenerator.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp:31, from pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp:28: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp:27: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_XICGenerator.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/Parabola.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/math/Parabola.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/math/Parabola.lo pwiz/utility/math/Parabola.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/math/Parabola.lo -MD -MP -MF pwiz/utility/math/.deps/Parabola.Tpo -c pwiz/utility/math/Parabola.cpp -fPIC -DPIC -o pwiz/utility/math/.libs/Parabola.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/math/Parabola.lo -MD -MP -MF pwiz/utility/math/.deps/Parabola.Tpo -c pwiz/utility/math/Parabola.cpp -o pwiz/utility/math/Parabola.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_MGF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_MGF.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_MGF.lo pwiz/data/msdata/Serializer_MGF.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_MGF.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_MGF.Tpo -c pwiz/data/msdata/Serializer_MGF.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_MGF.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/Serializer_MGF.hpp:27, from pwiz/data/msdata/Serializer_MGF.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz/data/msdata/Serializer_MGF.cpp: In member function ‘void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*) const’: pwiz/data/msdata/Serializer_MGF.cpp:71:61: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 71 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : ""; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from ./pwiz/utility/misc/Filesystem.hpp:37, from pwiz/data/msdata/Serializer_MGF.cpp:27: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Serializer_MGF.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_MGF.Tpo -c pwiz/data/msdata/Serializer_MGF.cpp -o pwiz/data/msdata/Serializer_MGF.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/ChromatogramList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Bruker/.libs/ChromatogramList_Bruker.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/ChromatogramListBase.hpp:28, from pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp:24, from pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/ChromatogramList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/Reader_ABI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/Reader_ABI.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/Reader_ABI.lo pwiz/data/vendor_readers/ABI/Reader_ABI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/Reader_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/Reader_ABI.Tpo -c pwiz/data/vendor_readers/ABI/Reader_ABI.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/.libs/Reader_ABI.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/ABI/Reader_ABI.hpp:28, from pwiz/data/vendor_readers/ABI/Reader_ABI.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/Reader_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/Reader_ABI.Tpo -c pwiz/data/vendor_readers/ABI/Reader_ABI.cpp -o pwiz/data/vendor_readers/ABI/Reader_ABI.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/T2D/.deps/Reader_ABI_T2D.Tpo -c pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/T2D/.libs/Reader_ABI_T2D.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp:28, from pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/T2D/.deps/Reader_ABI_T2D.Tpo -c pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp -o pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/BinaryIndexStream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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-I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/BinaryIndexStream.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/common/BinaryIndexStream.lo pwiz/data/common/BinaryIndexStream.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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-D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/BinaryIndexStream.lo -MD -MP -MF pwiz/data/common/.deps/BinaryIndexStream.Tpo -c pwiz/data/common/BinaryIndexStream.cpp -fPIC -DPIC -o pwiz/data/common/.libs/BinaryIndexStream.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 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pwiz/data/common/.deps/BinaryIndexStream.Tpo -c pwiz/data/common/BinaryIndexStream.cpp -o pwiz/data/common/BinaryIndexStream.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/SpectrumBinaryData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/SpectrumBinaryData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/SpectrumBinaryData.lo pwiz/analysis/passive/SpectrumBinaryData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/SpectrumBinaryData.lo -MD -MP -MF pwiz/analysis/passive/.deps/SpectrumBinaryData.Tpo -c pwiz/analysis/passive/SpectrumBinaryData.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/SpectrumBinaryData.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from pwiz/analysis/passive/SpectrumBinaryData.hpp:29, from pwiz/analysis/passive/SpectrumBinaryData.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 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-Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/SpectrumBinaryData.lo -MD -MP -MF pwiz/analysis/passive/.deps/SpectrumBinaryData.Tpo -c pwiz/analysis/passive/SpectrumBinaryData.cpp -o pwiz/analysis/passive/SpectrumBinaryData.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/obo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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pwiz/data/common/obo.lo pwiz/data/common/obo.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 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-Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/obo.lo -MD -MP -MF pwiz/data/common/.deps/obo.Tpo -c pwiz/data/common/obo.cpp -fPIC -DPIC -o pwiz/data/common/.libs/obo.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" 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-fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/obo.lo -MD -MP -MF pwiz/data/common/.deps/obo.Tpo -c pwiz/data/common/obo.cpp -o pwiz/data/common/obo.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/SpectrumList_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UIMF/.libs/SpectrumList_UIMF.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp:28, from pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/SpectrumList_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp -o pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeFromIsotope.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeFromIsotope.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/list:62, from ./pwiz/utility/misc/IntegerSet.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp:27: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeFromIsotope.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeTable.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeTable.lo pwiz/utility/chemistry/IsotopeTable.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeTable.Tpo -c pwiz/utility/chemistry/IsotopeTable.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeTable.o In file included from pwiz/utility/chemistry/IsotopeTable.cpp:26: pwiz/utility/chemistry/IsotopeTable.hpp:50:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 50 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeTable.hpp:29: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeTable.Tpo -c pwiz/utility/chemistry/IsotopeTable.cpp -o pwiz/utility/chemistry/IsotopeTable.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxHelpers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxHelpers.lo pwiz/analysis/demux/DemuxHelpers.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxHelpers.Tpo -c pwiz/analysis/demux/DemuxHelpers.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxHelpers.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/DemuxTypes.hpp:23, from pwiz/analysis/demux/DemuxHelpers.hpp:29, from pwiz/analysis/demux/DemuxHelpers.cpp:20: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxHelpers.Tpo -c pwiz/analysis/demux/DemuxHelpers.cpp -o pwiz/analysis/demux/DemuxHelpers.o >/dev/null 2>&1 depbase=`echo libraries/libsvm-3.0/svm.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF $depbase.Tpo -c -o libraries/libsvm-3.0/svm.lo libraries/libsvm-3.0/svm.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF libraries/libsvm-3.0/.deps/svm.Tpo -c libraries/libsvm-3.0/svm.cpp -fPIC -DPIC -o libraries/libsvm-3.0/.libs/svm.o libraries/libsvm-3.0/svm.cpp: In function ‘svm_model* svm_load_model(const char*)’: libraries/libsvm-3.0/svm.cpp:2707:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2707 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2711:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2711 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2733:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2733 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2754:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2754 | fscanf(fp,"%d",¶m.degree); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2756:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2756 | fscanf(fp,"%lf",¶m.gamma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2758:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2758 | fscanf(fp,"%lf",¶m.coef0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2760:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2760 | fscanf(fp,"%d",&model->nr_class); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2762:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2762 | fscanf(fp,"%d",&model->l); | ~~~~~~^~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2768:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2768 | fscanf(fp,"%lf",&model->rho[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2775:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2775 | fscanf(fp,"%d",&model->label[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2782:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2782 | fscanf(fp,"%lf",&model->probA[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2789:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2789 | fscanf(fp,"%lf",&model->probB[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2796:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2796 | fscanf(fp,"%d",&model->nSV[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp: In function ‘svm_train’: libraries/libsvm-3.0/svm.cpp:38:38: warning: argument 1 range [18446744056529682432, 18446744073709551608] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 38 | #define Malloc(type,n) (type *)malloc((n)*sizeof(type)) | ~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/std_abs.h:38, from /usr/include/c++/13/cmath:49, from /usr/include/c++/13/math.h:36, from libraries/libsvm-3.0/svm.cpp:2: /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF libraries/libsvm-3.0/.deps/svm.Tpo -c libraries/libsvm-3.0/svm.cpp -o libraries/libsvm-3.0/svm.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/SpectrumPeakExtractor.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/SpectrumPeakExtractor.lo pwiz/analysis/demux/SpectrumPeakExtractor.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF pwiz/analysis/demux/.deps/SpectrumPeakExtractor.Tpo -c pwiz/analysis/demux/SpectrumPeakExtractor.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/SpectrumPeakExtractor.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/demux/SpectrumPeakExtractor.hpp:24, from pwiz/analysis/demux/SpectrumPeakExtractor.cpp:22: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from pwiz/analysis/demux/SpectrumPeakExtractor.hpp:23: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF pwiz/analysis/demux/.deps/SpectrumPeakExtractor.Tpo -c pwiz/analysis/demux/SpectrumPeakExtractor.cpp -o pwiz/analysis/demux/SpectrumPeakExtractor.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_mzXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_mzXML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_mzXML.lo pwiz/data/msdata/SpectrumList_mzXML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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-o pwiz/data/msdata/.libs/SpectrumList_mzXML.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_mzXML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzXML.Tpo -c pwiz/data/msdata/SpectrumList_mzXML.cpp -o pwiz/data/msdata/SpectrumList_mzXML.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/ParamTypes.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 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"/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/common/ParamTypes.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/common/ParamTypes.lo pwiz/data/common/ParamTypes.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 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-I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFT.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFT.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ./pwiz/analysis/frequency/PeakDetector.hpp:29, from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./pwiz/utility/misc/BinaryData.hpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:109:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 109 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:61:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 61 | auto_ptr isotopeEnvelopeEstimator_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:62:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | auto_ptr pdmf_; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:64:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 64 | auto_ptr createFrequencyData(const MZIntensityPair* begin, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:130:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 130 | auto_ptr createIsotopeEnvelopeEstimator() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In function ‘std::auto_ptr pwiz::analysis::{anonymous}::createIsotopeEnvelopeEstimator()’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:139:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 139 | return auto_ptr(new IsotopeEnvelopeEstimator(config)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In member function ‘void pwiz::analysis::PeakFamilyDetectorFT::Impl::detect(const pwiz::analysis::PeakFamilyDetector::MZIntensityPair*, const pwiz::analysis::PeakFamilyDetector::MZIntensityPair*, std::vector&)’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:169:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 169 | auto_ptr fd = createFrequencyData(begin, end); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: At global scope: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:181:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 181 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In member function ‘std::auto_ptr pwiz::analysis::PeakFamilyDetectorFT::Impl::createFrequencyData(const pwiz::analysis::PeakFamilyDetector::MZIntensityPair*, const pwiz::analysis::PeakFamilyDetector::MZIntensityPair*) const’: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:185:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 185 | auto_ptr fd(new FrequencyData); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFT.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/DefaultReaderList.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/DefaultReaderList.lo pwiz/data/msdata/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/msdata/.deps/DefaultReaderList.Tpo -c pwiz/data/msdata/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/DefaultReaderList.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/Reader.hpp:29, from pwiz/data/msdata/DefaultReaderList.hpp:29, from pwiz/data/msdata/DefaultReaderList.cpp:29: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from ./pwiz/utility/misc/Std.hpp:28, from pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from pwiz/data/msdata/DefaultReaderList.cpp:27: pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)’: pwiz/data/msdata/DefaultReaderList.cpp:61:58: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 61 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ ./pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ./pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/msdata/DefaultReaderList.cpp:62:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 62 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)’: pwiz/data/msdata/DefaultReaderList.cpp:103:44: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 103 | msd.id = msd.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from ./pwiz/utility/misc/Filesystem.hpp:37: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const’: pwiz/data/msdata/DefaultReaderList.cpp:265:59: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 265 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():""); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’: pwiz/data/msdata/DefaultReaderList.cpp:396:41: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 396 | sourceFile->name = BFS_STRING(p.leaf()); | ~~~~~~^~ ./pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’ 64 | #define BFS_STRING(p) (p).string() | ^ /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ pwiz/data/msdata/DefaultReaderList.cpp:397:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations] 397 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string(); | ~~~~~~~~~~~~~^~ /usr/include/boost/filesystem/path.hpp:1129:10: note: declared here 1129 | path branch_path() const { return parent_path(); } | ^~~~~~~~~~~ pwiz/data/msdata/DefaultReaderList.cpp:400:46: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 400 | result.id = result.run.id = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 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-fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/TabularConfig.lo -MD -MP -MF pwiz/analysis/passive/.deps/TabularConfig.Tpo -c pwiz/analysis/passive/TabularConfig.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/TabularConfig.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/passive/TabularConfig.lo -MD -MP -MF pwiz/analysis/passive/.deps/TabularConfig.Tpo -c pwiz/analysis/passive/TabularConfig.cpp -o pwiz/analysis/passive/TabularConfig.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/SpectrumList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Waters/.libs/SpectrumList_Waters.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp:24, from pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/SpectrumList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp -o pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 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pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo pwiz/analysis/chromatogram_processing/ChromatogramListFactory.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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pwiz/analysis/chromatogram_processing/.libs/ChromatogramListFactory.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp:28, from pwiz/analysis/chromatogram_processing/ChromatogramListFactory.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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pwiz/analysis/frequency/.deps/MagnitudeLorentzian.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzian.cpp -o pwiz/analysis/frequency/MagnitudeLorentzian.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Peptide.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Peptide.lo pwiz/data/proteome/Peptide.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF pwiz/data/proteome/.deps/Peptide.Tpo -c pwiz/data/proteome/Peptide.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Peptide.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF pwiz/data/proteome/.deps/Peptide.Tpo -c pwiz/data/proteome/Peptide.cpp -o pwiz/data/proteome/Peptide.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_mzML.lo pwiz/data/msdata/SpectrumList_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzML.Tpo -c pwiz/data/msdata/SpectrumList_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_mzML.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/msdata/SpectrumList_mzML.hpp:29, from pwiz/data/msdata/SpectrumList_mzML.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29, from ./pwiz/data/common/ParamTypes.hpp:29, from ./pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzML.Tpo -c pwiz/data/msdata/SpectrumList_mzML.cpp -o pwiz/data/msdata/SpectrumList_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/SpectrumList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Shimadzu/.libs/SpectrumList_Shimadzu.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp:24, from pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/SpectrumList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.cpp -o pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Reader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Reader.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Reader.lo pwiz/data/msdata/Reader.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Reader.lo -MD -MP -MF pwiz/data/msdata/.deps/Reader.Tpo -c pwiz/data/msdata/Reader.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Reader.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/Reader.hpp:29, from pwiz/data/msdata/Reader.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/Reader.lo -MD -MP -MF pwiz/data/msdata/.deps/Reader.Tpo -c pwiz/data/msdata/Reader.cpp -o pwiz/data/msdata/Reader.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Sorter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Sorter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28, from pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp:30, from pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Sorter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Sorter.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_Sorter.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/Filesystem.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/Filesystem.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/Filesystem.lo pwiz/utility/misc/Filesystem.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/Filesystem.lo -MD -MP -MF pwiz/utility/misc/.deps/Filesystem.Tpo -c pwiz/utility/misc/Filesystem.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/Filesystem.o pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)’: pwiz/utility/misc/Filesystem.cpp:481:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 481 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from pwiz/utility/misc/Filesystem.hpp:36, from pwiz/utility/misc/Filesystem.cpp:26: /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)’: pwiz/utility/misc/Filesystem.cpp:497:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 497 | bfs::copy_directory(from, to, ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)’: pwiz/utility/misc/Filesystem.cpp:537:32: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 537 | bfs::copy_directory(from, to, *ec); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:443:13: note: declared here 443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT | ^~~~~~~~~~~~~~ pwiz/utility/misc/Filesystem.cpp:539:32: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations] 539 | bfs::copy_directory(from, to); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:437:13: note: declared here 437 | inline void copy_directory(path const& from, path const& to) | ^~~~~~~~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/Filesystem.lo -MD -MP -MF pwiz/utility/misc/.deps/Filesystem.Tpo -c pwiz/utility/misc/Filesystem.cpp -o pwiz/utility/misc/Filesystem.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakFilter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakFilter.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PeakFilter.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/TruncatedLorentzianParameters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash 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-DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/TruncatedLorentzianParameters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzianParameters.lo pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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pwiz/analysis/frequency/TruncatedLorentzianParameters.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianParameters.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp -o pwiz/analysis/frequency/TruncatedLorentzianParameters.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/random_access_compressed_ifstream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/utility/misc/random_access_compressed_ifstream.lo pwiz/utility/misc/random_access_compressed_ifstream.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 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-DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/random_access_compressed_ifstream.lo -MD -MP -MF pwiz/utility/misc/.deps/random_access_compressed_ifstream.Tpo -c pwiz/utility/misc/random_access_compressed_ifstream.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/random_access_compressed_ifstream.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/utility/misc/random_access_compressed_ifstream.lo -MD -MP -MF pwiz/utility/misc/.deps/random_access_compressed_ifstream.Tpo -c pwiz/utility/misc/random_access_compressed_ifstream.cpp -o pwiz/utility/misc/random_access_compressed_ifstream.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_LockmassRefiner.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_LockmassRefiner.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp:29, from pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp:28, from pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_LockmassRefiner.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/Reader_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Agilent/.libs/Reader_Agilent.o In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp:28, from pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp:25: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/Reader_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp -o pwiz/data/vendor_readers/Agilent/Reader_Agilent.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/TraDataFile.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/TraDataFile.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/tradata/TraDataFile.lo pwiz/data/tradata/TraDataFile.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/tradata/TraDataFile.lo -MD -MP -MF pwiz/data/tradata/.deps/TraDataFile.Tpo -c pwiz/data/tradata/TraDataFile.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/TraDataFile.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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pwiz/data/tradata/.deps/TraDataFile.Tpo -c pwiz/data/tradata/TraDataFile.cpp -o pwiz/data/tradata/TraDataFile.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/ProteomeDataFile.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_mzid.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/Serializer_mzid.lo pwiz/data/identdata/Serializer_mzid.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_mzid.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_mzid.Tpo -c pwiz/data/identdata/Serializer_mzid.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Serializer_mzid.o libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/Serializer_mzid.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_mzid.Tpo -c pwiz/data/identdata/Serializer_mzid.cpp -o pwiz/data/identdata/Serializer_mzid.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/References.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/References.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/References.lo pwiz/data/identdata/References.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/References.lo -MD -MP -MF pwiz/data/identdata/.deps/References.Tpo -c pwiz/data/identdata/References.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/References.o In file included from pwiz/data/identdata/References.cpp:26: pwiz/data/identdata/TextWriter.hpp: In member function ‘pwiz::identdata::TextWriter& pwiz::identdata::TextWriter::operator()(const pwiz::identdata::IdentData&)’: pwiz/data/identdata/TextWriter.hpp:887:46: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Allocator> std::operator+(const _CharT*, const __cxx11::basic_string<_CharT, _Traits, _Allocator>&) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 887 | ("version: " + mzid.version()); | ^ In file included from /usr/include/c++/13/string:54, from /usr/include/c++/13/stdexcept:39, from ./pwiz/utility/misc/Exception.hpp:28, from pwiz/data/identdata/IdentData.hpp:29, from pwiz/data/identdata/References.hpp:29, from pwiz/data/identdata/References.cpp:25: /usr/include/c++/13/bits/basic_string.h:3571:5: note: declared here 3571 | operator+(const _CharT* __lhs, | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/identdata/References.lo -MD -MP -MF pwiz/data/identdata/.deps/References.Tpo -c pwiz/data/identdata/References.cpp -o pwiz/data/identdata/References.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzianTestData.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/MagnitudeLorentzianTestData.o pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp:28:20: warning: ‘sampleData_’ initialized and declared ‘extern’ 28 | extern const char* sampleData_ = | ^~~~~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzianTestData.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp -o pwiz/analysis/frequency/MagnitudeLorentzianTestData.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumIterator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumIterator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumIterator.lo pwiz/data/msdata/SpectrumIterator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumIterator.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumIterator.Tpo -c pwiz/data/msdata/SpectrumIterator.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumIterator.o In file included from pwiz/data/msdata/MSData.hpp:29, from pwiz/data/msdata/SpectrumIterator.hpp:29, from pwiz/data/msdata/SpectrumIterator.cpp:26: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ libtool: compile: s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /<>/debian/build/libraries/Eigen -I /<>/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz/data/msdata/SpectrumIterator.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumIterator.Tpo -c pwiz/data/msdata/SpectrumIterator.cpp -o pwiz/data/msdata/SpectrumIterator.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -version-info 3:0:0 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o libpwiz.la -rpath /usr/lib ./libraries/boost_aux/libs/nowide/src/iostream.lo ./pwiz/utility/math/erf.lo ./pwiz/data/identdata/Version.lo pwiz/data/tradata/Reader.lo ./pwiz/data/msdata/Diff.lo ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo ./pwiz/analysis/peakdetect/PeakFitter.lo ./pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo ./pwiz/utility/minimxml/XMLWriter.lo pwiz/data/tradata/DefaultReaderList.lo ./pwiz/analysis/demux/DemuxDebugWriter.lo ./pwiz/data/msdata/BinaryDataEncoder.lo ./pwiz/analysis/spectrum_processing/SpectrumList_3D.lo ./pwiz/analysis/passive/RegionSlice.lo ./pwiz/analysis/peptideid/PeptideIDMap.lo ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo ./pwiz/utility/proteome/IPIFASTADatabase.lo pwiz/Version.lo ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.lo ./pwiz/data/identdata/IdentData.lo ./pwiz/data/msdata/Version.lo ./pwiz/analysis/peakdetect/PeakelPicker.lo ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo ./pwiz/data/msdata/SpectrumListCache.lo pwiz_tools/common/MSDataAnalyzerApplication.lo ./pwiz/analysis/demux/CubicHermiteSpline.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo ./pwiz/utility/misc/TabReader.lo ./pwiz/analysis/peakdetect/FeatureModeler.lo ./pwiz/data/msdata/Serializer_MSn.lo ./pwiz/data/common/diff_std.lo ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo ./pwiz/analysis/peakdetect/PeakelGrower.lo ./pwiz/data/proteome/AminoAcid.lo ./pwiz/data/proteome/DefaultReaderList.lo ./pwiz/analysis/peptideid/PeptideID_pepXML.lo ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo ./pwiz/analysis/peakdetect/PeakExtractor.lo ./pwiz/utility/misc/Base64.lo ./pwiz/data/msdata/SpectrumList_BTDX.lo ./pwiz/data/msdata/MSDataFile.lo ./pwiz/data/proteome/Reader_FASTA.lo ./pwiz/data/msdata/IO.lo ./pwiz/analysis/common/CwtPeakDetector.lo ./pwiz/analysis/peakdetect/FeatureDetectorSimple.lo ./pwiz/utility/misc/SHA1.lo ./pwiz/utility/misc/VendorReaderTestHarness.lo ./pwiz/analysis/demux/DemuxSolver.lo ./pwiz/data/msdata/SpectrumWorkerThreads.lo ./pwiz/data/identdata/DelimWriter.lo pwiz/data/tradata/IO.lo ./pwiz/analysis/frequency/TruncatedLorentzian.lo pwiz/data/tradata/TraData.lo ./pwiz/data/msdata/SpectrumList_MSn.lo pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo ./pwiz/analysis/demux/MatrixIO.lo ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo ./pwiz/analysis/common/WhittakerSmoother.lo ./pwiz/analysis/demux/OverlapDemultiplexer.lo ./pwiz/data/common/cv.lo ./pwiz/analysis/demux/DemuxDebugReader.lo ./pwiz/data/msdata/MSNumpress.lo ./pwiz/data/msdata/examples.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo ./pwiz/analysis/demux/PrecursorMaskCodec.lo pwiz/data/tradata/Diff.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo ./pwiz/data/proteome/Digestion.lo ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo ./pwiz/data/msdata/ChromatogramList_mzML.lo ./pwiz/data/misc/MinimumPepXML.lo ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo ./pwiz/analysis/common/SavitzkyGolaySmoother.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo pwiz/analysis/proteome_processing/ProteinListFactory.lo ./pwiz/utility/math/Stats.lo ./pwiz/analysis/passive/RegionAnalyzer.lo ./pwiz/data/identdata/Serializer_Text.lo ./pwiz/analysis/passive/RegionTIC.lo ./pwiz/data/proteome/Serializer_FASTA.lo ./pwiz/data/proteome/Modification.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo ./pwiz/analysis/spectrum_processing/ThresholdFilter.lo ./pwiz/data/misc/FrequencyDataTestData.lo ./pwiz/data/msdata/SpectrumList_MGF.lo ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo ./pwiz/data/identdata/Serializer_pepXML.lo ./pwiz/analysis/peakdetect/MZRTField.lo ./pwiz/data/proteome/Diff.lo ./pwiz/utility/chemistry/Chemistry.lo ./pwiz/data/identdata/Diff.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo ./pwiz/data/proteome/ProteinListCache.lo ./pwiz/analysis/peakdetect/Noise.lo pwiz/data/tradata/Version.lo ./pwiz/utility/chemistry/ChemistryData.lo ./libraries/CSpline/CSpline.lo ./pwiz/data/msdata/Index_mzML.lo ./pwiz/analysis/frequency/ParameterEstimator.lo ./pwiz/analysis/frequency/FrequencyEstimatorSimple.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo ./pwiz/analysis/passive/PepXMLCat.lo ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo ./pwiz/analysis/spectrum_processing/MS2Deisotoper.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo ./pwiz/data/vendor_readers/Waters/Reader_Waters.lo ./pwiz/data/msdata/SpectrumInfo.lo ./pwiz/analysis/peptideid/PeptideID_flat.lo ./pwiz/data/identdata/examples.lo ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo ./pwiz/utility/misc/IntegerSet.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.lo ./pwiz/analysis/demux/MSXDemultiplexer.lo ./pwiz/analysis/Version.lo ./pwiz/data/common/MemoryIndex.lo ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo ./pwiz/utility/misc/SHA1Calculator.lo ./pwiz/analysis/peakdetect/PeakFamilyDetector.lo ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.lo ./pwiz/data/identdata/DelimReader.lo ./pwiz/data/msdata/References.lo ./pwiz/analysis/passive/MetadataReporter.lo ./pwiz/analysis/spectrum_processing/SpectrumListFactory.lo pwiz/analysis/proteome_processing/ProteinList_Filter.lo ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo ./pwiz/analysis/passive/MSDataCache.lo ./pwiz/analysis/passive/SpectrumTable.lo ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo ./pwiz/analysis/peakdetect/PeakFinder.lo ./pwiz/data/proteome/examples.lo ./pwiz/data/msdata/MSData.lo ./pwiz/utility/chemistry/IsotopeCalculator.lo ./pwiz/data/vendor_readers/ExtendedReaderList.lo ./pwiz/analysis/frequency/PeakDetectorNaive.lo ./pwiz/data/proteome/Reader.lo ./pwiz/data/misc/FrequencyData.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo ./pwiz/utility/misc/BinaryData.lo ./pwiz/data/identdata/Serializer_protXML.lo ./pwiz/utility/chemistry/MZTolerance.lo ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.lo ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo ./pwiz/data/identdata/Reader.lo ./pwiz/utility/misc/IterationListener.lo pwiz/data/tradata/examples.lo ./pwiz/data/common/CVTranslator.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo ./pwiz/data/common/Unimod.lo ./pwiz/data/proteome/Version.lo ./pwiz/data/identdata/IO.lo ./pwiz/data/msdata/Serializer_mzXML.lo ./pwiz/data/identdata/DefaultReaderList.lo ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo ./pwiz/analysis/common/ExtraZeroSamplesFilter.lo ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo ./pwiz/utility/minimxml/SAXParser.lo ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo ./pwiz/data/identdata/IdentDataFile.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo ./pwiz/data/msdata/Serializer_mzML.lo ./pwiz/data/identdata/Pep2MzIdent.lo ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo ./pwiz/analysis/passive/RegionSIC.lo ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo ./pwiz/analysis/passive/RunSummary.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo pwiz/data/tradata/References.lo ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo ./pwiz/analysis/common/ZeroSampleFiller.lo ./pwiz/utility/misc/MSIHandler.lo ./pwiz/data/msdata/LegacyAdapter.lo ./pwiz/data/msdata/MSDataMerger.lo ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo ./pwiz/data/proteome/ProteomeData.lo ./pwiz/analysis/common/LocalMaximumPeakDetector.lo ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo ./pwiz/analysis/passive/MSDataAnalyzer.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo ./pwiz/utility/math/Parabola.lo ./pwiz/data/msdata/Serializer_MGF.lo ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo ./pwiz/data/vendor_readers/ABI/Reader_ABI.lo ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo ./pwiz/data/common/BinaryIndexStream.lo ./pwiz/analysis/passive/SpectrumBinaryData.lo ./pwiz/data/common/obo.lo ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo ./pwiz/utility/chemistry/IsotopeTable.lo ./pwiz/analysis/demux/DemuxHelpers.lo ./libraries/libsvm-3.0/svm.lo ./pwiz/analysis/demux/SpectrumPeakExtractor.lo ./pwiz/data/msdata/SpectrumList_mzXML.lo ./pwiz/data/common/ParamTypes.lo pwiz/data/tradata/Serializer_traML.lo ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo ./pwiz/data/msdata/DefaultReaderList.lo ./pwiz/data/misc/PeakData.lo ./pwiz/analysis/passive/TabularConfig.lo ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo ./pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo ./pwiz/analysis/frequency/MagnitudeLorentzian.lo ./pwiz/data/proteome/Peptide.lo ./pwiz/data/msdata/SpectrumList_mzML.lo ./pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo ./pwiz/data/msdata/Reader.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo ./pwiz/utility/misc/Filesystem.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo ./pwiz/analysis/frequency/TruncatedLorentzianParameters.lo ./pwiz/utility/misc/random_access_compressed_ifstream.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo pwiz/data/tradata/TraDataFile.lo ./pwiz/data/proteome/ProteomeDataFile.lo ./pwiz/data/identdata/KwCVMap.lo ./pwiz/data/identdata/Serializer_mzid.lo ./pwiz/data/identdata/References.lo ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo ./pwiz/data/msdata/SpectrumIterator.lo -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/s390x-linux-gnu/13/../../../s390x-linux-gnu/crti.o /usr/lib/gcc/s390x-linux-gnu/13/crtbeginS.o ./libraries/boost_aux/libs/nowide/src/.libs/iostream.o ./pwiz/utility/math/.libs/erf.o ./pwiz/data/identdata/.libs/Version.o pwiz/data/tradata/.libs/Reader.o ./pwiz/data/msdata/.libs/Diff.o ./pwiz/data/vendor_readers/Thermo/.libs/SpectrumList_Thermo.o ./pwiz/analysis/peakdetect/.libs/PeakFitter.o ./pwiz/data/vendor_readers/UNIFI/.libs/SpectrumList_UNIFI.o ./pwiz/utility/minimxml/.libs/XMLWriter.o pwiz/data/tradata/.libs/DefaultReaderList.o ./pwiz/analysis/demux/.libs/DemuxDebugWriter.o ./pwiz/data/msdata/.libs/BinaryDataEncoder.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_3D.o ./pwiz/analysis/passive/.libs/RegionSlice.o ./pwiz/analysis/peptideid/.libs/PeptideIDMap.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o ./pwiz/analysis/spectrum_processing/.libs/PrecursorRecalculatorDefault.o ./pwiz/utility/proteome/.libs/IPIFASTADatabase.o pwiz/.libs/Version.o ./pwiz/data/vendor_readers/UNIFI/.libs/Reader_UNIFI_Detail.o ./pwiz/data/identdata/.libs/IdentData.o ./pwiz/data/msdata/.libs/Version.o ./pwiz/analysis/peakdetect/.libs/PeakelPicker.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_TitleMaker.o ./pwiz/data/vendor_readers/ABI/T2D/.libs/SpectrumList_ABI_T2D.o ./pwiz/data/msdata/.libs/SpectrumListCache.o pwiz_tools/common/.libs/MSDataAnalyzerApplication.o ./pwiz/analysis/demux/.libs/CubicHermiteSpline.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ScanSummer.o ./pwiz/utility/misc/.libs/TabReader.o ./pwiz/analysis/peakdetect/.libs/FeatureModeler.o ./pwiz/data/msdata/.libs/Serializer_MSn.o ./pwiz/data/common/.libs/diff_std.o ./pwiz/data/vendor_readers/ABI/.libs/ChromatogramList_ABI.o ./pwiz/analysis/peakdetect/.libs/PeakelGrower.o ./pwiz/data/proteome/.libs/AminoAcid.o ./pwiz/data/proteome/.libs/DefaultReaderList.o ./pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o ./pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilterTestData.o ./pwiz/analysis/peakdetect/.libs/PeakExtractor.o ./pwiz/utility/misc/.libs/Base64.o ./pwiz/data/msdata/.libs/SpectrumList_BTDX.o ./pwiz/data/msdata/.libs/MSDataFile.o ./pwiz/data/proteome/.libs/Reader_FASTA.o ./pwiz/data/msdata/.libs/IO.o ./pwiz/analysis/common/.libs/CwtPeakDetector.o ./pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o ./pwiz/utility/misc/.libs/SHA1.o ./pwiz/utility/misc/.libs/VendorReaderTestHarness.o ./pwiz/analysis/demux/.libs/DemuxSolver.o ./pwiz/data/msdata/.libs/SpectrumWorkerThreads.o ./pwiz/data/identdata/.libs/DelimWriter.o pwiz/data/tradata/.libs/IO.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzian.o pwiz/data/tradata/.libs/TraData.o ./pwiz/data/msdata/.libs/SpectrumList_MSn.o pwiz/analysis/proteome_processing/.libs/ProteinList_DecoyGenerator.o ./pwiz/analysis/demux/.libs/MatrixIO.o ./pwiz/data/vendor_readers/Waters/.libs/ChromatogramList_Waters.o ./pwiz/analysis/common/.libs/WhittakerSmoother.o ./pwiz/analysis/demux/.libs/OverlapDemultiplexer.o ./pwiz/data/common/.libs/cv.o ./pwiz/analysis/demux/.libs/DemuxDebugReader.o ./pwiz/data/msdata/.libs/MSNumpress.o ./pwiz/data/msdata/.libs/examples.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZWindow.o ./pwiz/analysis/demux/.libs/PrecursorMaskCodec.o pwiz/data/tradata/.libs/Diff.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Smoother.o ./pwiz/data/proteome/.libs/Digestion.o ./pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker.o ./pwiz/data/msdata/.libs/ChromatogramList_mzML.o ./pwiz/data/misc/.libs/MinimumPepXML.o ./pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o ./pwiz/analysis/common/.libs/SavitzkyGolaySmoother.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o ./pwiz/utility/math/.libs/Stats.o ./pwiz/analysis/passive/.libs/RegionAnalyzer.o ./pwiz/data/identdata/.libs/Serializer_Text.o ./pwiz/analysis/passive/.libs/RegionTIC.o ./pwiz/data/proteome/.libs/Serializer_FASTA.o ./pwiz/data/proteome/.libs/Modification.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o ./pwiz/analysis/spectrum_processing/.libs/ThresholdFilter.o ./pwiz/data/misc/.libs/FrequencyDataTestData.o ./pwiz/data/msdata/.libs/SpectrumList_MGF.o ./pwiz/data/vendor_readers/Thermo/.libs/ChromatogramList_Thermo.o ./pwiz/data/identdata/.libs/Serializer_pepXML.o ./pwiz/analysis/peakdetect/.libs/MZRTField.o ./pwiz/data/proteome/.libs/Diff.o ./pwiz/utility/chemistry/.libs/Chemistry.o ./pwiz/data/identdata/.libs/Diff.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Filter.o ./pwiz/data/proteome/.libs/ProteinListCache.o ./pwiz/analysis/peakdetect/.libs/Noise.o pwiz/data/tradata/.libs/Version.o ./pwiz/utility/chemistry/.libs/ChemistryData.o ./libraries/CSpline/.libs/CSpline.o ./pwiz/data/msdata/.libs/Index_mzML.o ./pwiz/analysis/frequency/.libs/ParameterEstimator.o ./pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_Filter.o ./pwiz/analysis/passive/.libs/PepXMLCat.o ./pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o ./pwiz/analysis/spectrum_processing/.libs/MS2Deisotoper.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MetadataFixer.o ./pwiz/data/vendor_readers/Waters/.libs/Reader_Waters.o ./pwiz/data/msdata/.libs/SpectrumInfo.o ./pwiz/analysis/peptideid/.libs/PeptideID_flat.o ./pwiz/data/identdata/.libs/examples.o ./pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o ./pwiz/utility/misc/.libs/IntegerSet.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_SavitzkyGolaySmoother.o ./pwiz/analysis/demux/.libs/MSXDemultiplexer.o ./pwiz/analysis/.libs/Version.o ./pwiz/data/common/.libs/MemoryIndex.o ./pwiz/analysis/spectrum_processing/.libs/PrecursorMassFilter.o ./pwiz/data/vendor_readers/Thermo/.libs/Reader_Thermo.o ./pwiz/utility/misc/.libs/SHA1Calculator.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetector.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFTTestData.o ./pwiz/data/identdata/.libs/DelimReader.o ./pwiz/data/msdata/.libs/References.o ./pwiz/analysis/passive/.libs/MetadataReporter.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumListFactory.o pwiz/analysis/proteome_processing/.libs/ProteinList_Filter.o ./pwiz/data/vendor_readers/ABI/.libs/SpectrumList_ABI.o ./pwiz/analysis/passive/.libs/MSDataCache.o ./pwiz/analysis/passive/.libs/SpectrumTable.o ./pwiz/data/vendor_readers/UIMF/.libs/Reader_UIMF.o ./pwiz/analysis/peakdetect/.libs/PeakFinder.o ./pwiz/data/proteome/.libs/examples.o ./pwiz/data/msdata/.libs/MSData.o ./pwiz/utility/chemistry/.libs/IsotopeCalculator.o ./pwiz/data/vendor_readers/.libs/ExtendedReaderList.o ./pwiz/analysis/frequency/.libs/PeakDetectorNaive.o ./pwiz/data/proteome/.libs/Reader.o ./pwiz/data/misc/.libs/FrequencyData.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ZeroSamplesFilter.o ./pwiz/utility/misc/.libs/BinaryData.o ./pwiz/data/identdata/.libs/Serializer_protXML.o ./pwiz/utility/chemistry/.libs/MZTolerance.o ./pwiz/data/vendor_readers/UNIFI/.libs/Reader_UNIFI.o ./pwiz/data/vendor_readers/Agilent/.libs/ChromatogramList_Agilent.o ./pwiz/analysis/spectrum_processing/.libs/MS2NoiseFilter.o ./pwiz/data/identdata/.libs/Reader.o ./pwiz/utility/misc/.libs/IterationListener.o pwiz/data/tradata/.libs/examples.o ./pwiz/data/common/.libs/CVTranslator.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakPicker.o ./pwiz/data/common/.libs/Unimod.o ./pwiz/data/proteome/.libs/Version.o ./pwiz/data/identdata/.libs/IO.o ./pwiz/data/msdata/.libs/Serializer_mzXML.o ./pwiz/data/identdata/.libs/DefaultReaderList.o ./pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilter.o ./pwiz/analysis/common/.libs/ExtraZeroSamplesFilter.o ./pwiz/data/vendor_readers/Bruker/.libs/SpectrumList_Bruker.o ./pwiz/utility/minimxml/.libs/SAXParser.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_IonMobility.o ./pwiz/data/identdata/.libs/IdentDataFile.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Demux.o ./pwiz/data/msdata/.libs/Serializer_mzML.o ./pwiz/data/identdata/.libs/Pep2MzIdent.o ./pwiz/data/vendor_readers/Shimadzu/.libs/Reader_Shimadzu.o ./pwiz/analysis/passive/.libs/RegionSIC.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_LockmassRefiner.o ./pwiz/analysis/passive/.libs/RunSummary.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRefine.o pwiz/data/tradata/.libs/References.o ./pwiz/data/vendor_readers/Shimadzu/.libs/ChromatogramList_Shimadzu.o ./pwiz/analysis/common/.libs/ZeroSampleFiller.o ./pwiz/utility/misc/.libs/MSIHandler.o ./pwiz/data/msdata/.libs/LegacyAdapter.o ./pwiz/data/msdata/.libs/MSDataMerger.o ./pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker_Detail.o ./pwiz/data/proteome/.libs/ProteomeData.o ./pwiz/analysis/common/.libs/LocalMaximumPeakDetector.o ./pwiz/data/vendor_readers/Agilent/.libs/SpectrumList_Agilent.o ./pwiz/analysis/passive/.libs/MSDataAnalyzer.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZRefiner.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_XICGenerator.o ./pwiz/utility/math/.libs/Parabola.o ./pwiz/data/msdata/.libs/Serializer_MGF.o ./pwiz/data/vendor_readers/Bruker/.libs/ChromatogramList_Bruker.o ./pwiz/data/vendor_readers/ABI/.libs/Reader_ABI.o ./pwiz/data/vendor_readers/ABI/T2D/.libs/Reader_ABI_T2D.o ./pwiz/data/common/.libs/BinaryIndexStream.o ./pwiz/analysis/passive/.libs/SpectrumBinaryData.o ./pwiz/data/common/.libs/obo.o ./pwiz/data/vendor_readers/UIMF/.libs/SpectrumList_UIMF.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeFromIsotope.o ./pwiz/utility/chemistry/.libs/IsotopeTable.o ./pwiz/analysis/demux/.libs/DemuxHelpers.o ./libraries/libsvm-3.0/.libs/svm.o ./pwiz/analysis/demux/.libs/SpectrumPeakExtractor.o ./pwiz/data/msdata/.libs/SpectrumList_mzXML.o ./pwiz/data/common/.libs/ParamTypes.o pwiz/data/tradata/.libs/Serializer_traML.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFT.o ./pwiz/data/msdata/.libs/DefaultReaderList.o ./pwiz/data/misc/.libs/PeakData.o ./pwiz/analysis/passive/.libs/TabularConfig.o ./pwiz/data/vendor_readers/Waters/.libs/SpectrumList_Waters.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramListFactory.o ./pwiz/analysis/frequency/.libs/MagnitudeLorentzian.o ./pwiz/data/proteome/.libs/Peptide.o ./pwiz/data/msdata/.libs/SpectrumList_mzML.o ./pwiz/data/vendor_readers/Shimadzu/.libs/SpectrumList_Shimadzu.o ./pwiz/data/msdata/.libs/Reader.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Sorter.o ./pwiz/utility/misc/.libs/Filesystem.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakFilter.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzianParameters.o ./pwiz/utility/misc/.libs/random_access_compressed_ifstream.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_LockmassRefiner.o ./pwiz/data/vendor_readers/Agilent/.libs/Reader_Agilent.o pwiz/data/tradata/.libs/TraDataFile.o ./pwiz/data/proteome/.libs/ProteomeDataFile.o ./pwiz/data/identdata/.libs/KwCVMap.o ./pwiz/data/identdata/.libs/Serializer_mzid.o ./pwiz/data/identdata/.libs/References.o ./pwiz/analysis/frequency/.libs/MagnitudeLorentzianTestData.o ./pwiz/data/msdata/.libs/SpectrumIterator.o -L/usr/lib/s390x-linux-gnu -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -L/usr/lib/gcc/s390x-linux-gnu/13 -L/usr/lib/gcc/s390x-linux-gnu/13/../../../s390x-linux-gnu -L/usr/lib/gcc/s390x-linux-gnu/13/../../../../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/s390x-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/s390x-linux-gnu/13/crtendS.o /usr/lib/gcc/s390x-linux-gnu/13/../../../s390x-linux-gnu/crtn.o -g -O2 -mbackchain -flto=auto -fstack-protector-strong -Wl,-Bsymbolic-functions -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libpwiz.so.3 -o .libs/libpwiz.so.3.0.0 pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: type 'struct MZRTField' violates the C++ One Definition Rule [-Wodr] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^ pwiz/analysis/peakdetect/MZRTField.hpp:94:8: note: a type with different bases is defined in another translation unit 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^ pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: type 'struct MZRTField' violates the C++ One Definition Rule [-Wodr] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^ pwiz/analysis/peakdetect/MZRTField.hpp:94:8: note: a type with different bases is defined in another translation unit 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^ libraries/libsvm-3.0/svm.cpp: In function 'svm_train': libraries/libsvm-3.0/svm.cpp:2248:34: warning: argument 1 range [18446744056529682432, 18446744073709551608] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2248 | model->sv_coef = Malloc(double *,nr_class-1); | ^ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'malloc' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp: In function 'optimizationToString': pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:96: warning: function may return address of local variable [-Wreturn-local-addr] 200 | return enumToString(opt, kOptimizationStrings); | ^ pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:70: note: declared here 200 | return enumToString(opt, kOptimizationStrings); | ^ libtool: link: (cd ".libs" && rm -f "libpwiz.so.3" && ln -s "libpwiz.so.3.0.0" "libpwiz.so.3") libtool: link: (cd ".libs" && rm -f "libpwiz.so" && ln -s "libpwiz.so.3.0.0" "libpwiz.so") copying selected object files to avoid basename conflicts... libtool: link: ln pwiz/Version.o .libs/libpwiz.lax/lt1-Version.o || cp pwiz/Version.o .libs/libpwiz.lax/lt1-Version.o libtool: link: ln ./pwiz/data/msdata/Version.o .libs/libpwiz.lax/lt2-Version.o || cp ./pwiz/data/msdata/Version.o .libs/libpwiz.lax/lt2-Version.o libtool: link: ln ./pwiz/data/proteome/DefaultReaderList.o .libs/libpwiz.lax/lt3-DefaultReaderList.o || cp ./pwiz/data/proteome/DefaultReaderList.o .libs/libpwiz.lax/lt3-DefaultReaderList.o libtool: link: ln pwiz/data/tradata/IO.o .libs/libpwiz.lax/lt4-IO.o || cp pwiz/data/tradata/IO.o .libs/libpwiz.lax/lt4-IO.o libtool: link: ln pwiz/data/tradata/Diff.o .libs/libpwiz.lax/lt5-Diff.o || cp pwiz/data/tradata/Diff.o .libs/libpwiz.lax/lt5-Diff.o libtool: link: ln ./pwiz/data/proteome/Diff.o .libs/libpwiz.lax/lt6-Diff.o || cp ./pwiz/data/proteome/Diff.o .libs/libpwiz.lax/lt6-Diff.o libtool: link: ln ./pwiz/data/identdata/Diff.o .libs/libpwiz.lax/lt7-Diff.o || cp ./pwiz/data/identdata/Diff.o .libs/libpwiz.lax/lt7-Diff.o libtool: link: ln pwiz/data/tradata/Version.o .libs/libpwiz.lax/lt8-Version.o || cp pwiz/data/tradata/Version.o .libs/libpwiz.lax/lt8-Version.o libtool: link: ln ./pwiz/data/identdata/examples.o .libs/libpwiz.lax/lt9-examples.o || cp ./pwiz/data/identdata/examples.o .libs/libpwiz.lax/lt9-examples.o libtool: link: ln ./pwiz/analysis/Version.o .libs/libpwiz.lax/lt10-Version.o || cp ./pwiz/analysis/Version.o .libs/libpwiz.lax/lt10-Version.o libtool: link: ln ./pwiz/data/proteome/examples.o .libs/libpwiz.lax/lt11-examples.o || cp ./pwiz/data/proteome/examples.o .libs/libpwiz.lax/lt11-examples.o libtool: link: ln ./pwiz/data/proteome/Reader.o .libs/libpwiz.lax/lt12-Reader.o || cp ./pwiz/data/proteome/Reader.o .libs/libpwiz.lax/lt12-Reader.o libtool: link: ln ./pwiz/data/identdata/Reader.o .libs/libpwiz.lax/lt13-Reader.o || cp ./pwiz/data/identdata/Reader.o .libs/libpwiz.lax/lt13-Reader.o libtool: link: ln pwiz/data/tradata/examples.o .libs/libpwiz.lax/lt14-examples.o || cp pwiz/data/tradata/examples.o .libs/libpwiz.lax/lt14-examples.o libtool: link: ln ./pwiz/data/proteome/Version.o .libs/libpwiz.lax/lt15-Version.o || cp ./pwiz/data/proteome/Version.o .libs/libpwiz.lax/lt15-Version.o libtool: link: ln ./pwiz/data/identdata/IO.o .libs/libpwiz.lax/lt16-IO.o || cp ./pwiz/data/identdata/IO.o .libs/libpwiz.lax/lt16-IO.o libtool: link: ln ./pwiz/data/identdata/DefaultReaderList.o .libs/libpwiz.lax/lt17-DefaultReaderList.o || cp ./pwiz/data/identdata/DefaultReaderList.o .libs/libpwiz.lax/lt17-DefaultReaderList.o libtool: link: ln pwiz/data/tradata/References.o .libs/libpwiz.lax/lt18-References.o || cp pwiz/data/tradata/References.o .libs/libpwiz.lax/lt18-References.o libtool: link: ln ./pwiz/data/msdata/DefaultReaderList.o .libs/libpwiz.lax/lt19-DefaultReaderList.o || cp ./pwiz/data/msdata/DefaultReaderList.o .libs/libpwiz.lax/lt19-DefaultReaderList.o libtool: link: ln ./pwiz/data/msdata/Reader.o .libs/libpwiz.lax/lt20-Reader.o || cp ./pwiz/data/msdata/Reader.o .libs/libpwiz.lax/lt20-Reader.o libtool: link: ln ./pwiz/data/identdata/References.o .libs/libpwiz.lax/lt21-References.o || cp ./pwiz/data/identdata/References.o .libs/libpwiz.lax/lt21-References.o libtool: link: s390x-linux-gnu-ar cr .libs/libpwiz.a ./libraries/boost_aux/libs/nowide/src/iostream.o ./pwiz/utility/math/erf.o ./pwiz/data/identdata/Version.o pwiz/data/tradata/Reader.o ./pwiz/data/msdata/Diff.o ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.o ./pwiz/analysis/peakdetect/PeakFitter.o ./pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.o ./pwiz/utility/minimxml/XMLWriter.o pwiz/data/tradata/DefaultReaderList.o ./pwiz/analysis/demux/DemuxDebugWriter.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/analysis/spectrum_processing/SpectrumList_3D.o ./pwiz/analysis/passive/RegionSlice.o ./pwiz/analysis/peptideid/PeptideIDMap.o ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.o ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.o ./pwiz/utility/proteome/IPIFASTADatabase.o .libs/libpwiz.lax/lt1-Version.o ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.o ./pwiz/data/identdata/IdentData.o .libs/libpwiz.lax/lt2-Version.o ./pwiz/analysis/peakdetect/PeakelPicker.o ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.o ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.o ./pwiz/data/msdata/SpectrumListCache.o pwiz_tools/common/MSDataAnalyzerApplication.o ./pwiz/analysis/demux/CubicHermiteSpline.o ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.o ./pwiz/utility/misc/TabReader.o ./pwiz/analysis/peakdetect/FeatureModeler.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/common/diff_std.o ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.o ./pwiz/analysis/peakdetect/PeakelGrower.o ./pwiz/data/proteome/AminoAcid.o .libs/libpwiz.lax/lt3-DefaultReaderList.o ./pwiz/analysis/peptideid/PeptideID_pepXML.o ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.o ./pwiz/analysis/peakdetect/PeakExtractor.o ./pwiz/utility/misc/Base64.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/proteome/Reader_FASTA.o ./pwiz/data/msdata/IO.o ./pwiz/analysis/common/CwtPeakDetector.o ./pwiz/analysis/peakdetect/FeatureDetectorSimple.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/VendorReaderTestHarness.o ./pwiz/analysis/demux/DemuxSolver.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/DelimWriter.o .libs/libpwiz.lax/lt4-IO.o ./pwiz/analysis/frequency/TruncatedLorentzian.o pwiz/data/tradata/TraData.o ./pwiz/data/msdata/SpectrumList_MSn.o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.o ./pwiz/analysis/demux/MatrixIO.o ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.o ./pwiz/analysis/common/WhittakerSmoother.o ./pwiz/analysis/demux/OverlapDemultiplexer.o ./pwiz/data/common/cv.o ./pwiz/analysis/demux/DemuxDebugReader.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/examples.o ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.o ./pwiz/analysis/demux/PrecursorMaskCodec.o .libs/libpwiz.lax/lt5-Diff.o ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/misc/MinimumPepXML.o ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o ./pwiz/analysis/common/SavitzkyGolaySmoother.o ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o pwiz/analysis/proteome_processing/ProteinListFactory.o ./pwiz/utility/math/Stats.o ./pwiz/analysis/passive/RegionAnalyzer.o ./pwiz/data/identdata/Serializer_Text.o ./pwiz/analysis/passive/RegionTIC.o ./pwiz/data/proteome/Serializer_FASTA.o ./pwiz/data/proteome/Modification.o ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.o ./pwiz/analysis/spectrum_processing/ThresholdFilter.o ./pwiz/data/misc/FrequencyDataTestData.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/analysis/peakdetect/MZRTField.o .libs/libpwiz.lax/lt6-Diff.o ./pwiz/utility/chemistry/Chemistry.o .libs/libpwiz.lax/lt7-Diff.o ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.o ./pwiz/data/proteome/ProteinListCache.o ./pwiz/analysis/peakdetect/Noise.o .libs/libpwiz.lax/lt8-Version.o ./pwiz/utility/chemistry/ChemistryData.o ./libraries/CSpline/CSpline.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/analysis/frequency/ParameterEstimator.o ./pwiz/analysis/frequency/FrequencyEstimatorSimple.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.o ./pwiz/analysis/passive/PepXMLCat.o ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.o ./pwiz/analysis/spectrum_processing/MS2Deisotoper.o ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.o ./pwiz/data/vendor_readers/Waters/Reader_Waters.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/analysis/peptideid/PeptideID_flat.o .libs/libpwiz.lax/lt9-examples.o ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.o ./pwiz/analysis/demux/MSXDemultiplexer.o .libs/libpwiz.lax/lt10-Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.o ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/analysis/peakdetect/PeakFamilyDetector.o ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.o ./pwiz/data/identdata/DelimReader.o ./pwiz/data/msdata/References.o ./pwiz/analysis/passive/MetadataReporter.o ./pwiz/analysis/spectrum_processing/SpectrumListFactory.o pwiz/analysis/proteome_processing/ProteinList_Filter.o ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.o ./pwiz/analysis/passive/MSDataCache.o ./pwiz/analysis/passive/SpectrumTable.o ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.o ./pwiz/analysis/peakdetect/PeakFinder.o .libs/libpwiz.lax/lt11-examples.o ./pwiz/data/msdata/MSData.o ./pwiz/utility/chemistry/IsotopeCalculator.o ./pwiz/data/vendor_readers/ExtendedReaderList.o ./pwiz/analysis/frequency/PeakDetectorNaive.o .libs/libpwiz.lax/lt12-Reader.o ./pwiz/data/misc/FrequencyData.o ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.o ./pwiz/utility/misc/BinaryData.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.o ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.o ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.o .libs/libpwiz.lax/lt13-Reader.o ./pwiz/utility/misc/IterationListener.o .libs/libpwiz.lax/lt14-examples.o ./pwiz/data/common/CVTranslator.o ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.o ./pwiz/data/common/Unimod.o .libs/libpwiz.lax/lt15-Version.o .libs/libpwiz.lax/lt16-IO.o ./pwiz/data/msdata/Serializer_mzXML.o .libs/libpwiz.lax/lt17-DefaultReaderList.o ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.o ./pwiz/analysis/common/ExtraZeroSamplesFilter.o ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/identdata/Pep2MzIdent.o ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.o ./pwiz/analysis/passive/RegionSIC.o ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.o ./pwiz/analysis/passive/RunSummary.o ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.o .libs/libpwiz.lax/lt18-References.o ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.o ./pwiz/analysis/common/ZeroSampleFiller.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/MSDataMerger.o ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.o ./pwiz/data/proteome/ProteomeData.o ./pwiz/analysis/common/LocalMaximumPeakDetector.o ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.o ./pwiz/analysis/passive/MSDataAnalyzer.o ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.o ./pwiz/utility/math/Parabola.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.o ./pwiz/data/vendor_readers/ABI/Reader_ABI.o ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/analysis/passive/SpectrumBinaryData.o ./pwiz/data/common/obo.o ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.o ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.o ./pwiz/utility/chemistry/IsotopeTable.o ./pwiz/analysis/demux/DemuxHelpers.o ./libraries/libsvm-3.0/svm.o ./pwiz/analysis/demux/SpectrumPeakExtractor.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/common/ParamTypes.o pwiz/data/tradata/Serializer_traML.o ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o .libs/libpwiz.lax/lt19-DefaultReaderList.o ./pwiz/data/misc/PeakData.o ./pwiz/analysis/passive/TabularConfig.o ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o ./pwiz/analysis/chromatogram_processing/ChromatogramListFactory.o ./pwiz/analysis/frequency/MagnitudeLorentzian.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.o .libs/libpwiz.lax/lt20-Reader.o ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.o ./pwiz/utility/misc/Filesystem.o ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.o ./pwiz/analysis/frequency/TruncatedLorentzianParameters.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.o ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.o pwiz/data/tradata/TraDataFile.o ./pwiz/data/proteome/ProteomeDataFile.o ./pwiz/data/identdata/KwCVMap.o ./pwiz/data/identdata/Serializer_mzid.o .libs/libpwiz.lax/lt21-References.o ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.o ./pwiz/data/msdata/SpectrumIterator.o libtool: link: s390x-linux-gnu-ranlib .libs/libpwiz.a libtool: link: rm -fr .libs/libpwiz.lax libtool: link: ( cd ".libs" && rm -f "libpwiz.la" && ln -s "../libpwiz.la" "libpwiz.la" ) /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o txt2mzml ./pwiz_tools/examples/txt2mzml.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/txt2mzml ./pwiz_tools/examples/txt2mzml.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/msconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/commandline/msconvert.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/msconvert.o pwiz_tools/commandline/msconvert.cpp &&\ mv -f $depbase.Tpo $depbase.Po pwiz_tools/commandline/msconvert.cpp:444:32: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 444 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:444:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 444 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:967:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 967 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:967:50: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 967 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/Reader.hpp:29, from ./pwiz/data/msdata/DefaultReaderList.hpp:29, from ./pwiz/data/vendor_readers/ExtendedReaderList.hpp:29, from ./pwiz_tools/common/FullReaderList.hpp:29, from pwiz_tools/commandline/msconvert.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_construct.h:61, from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/memory:66, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/IterationListener.hpp:29, from ./pwiz/data/msdata/Reader.hpp:28: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp: In member function ‘std::string Config::outputFilename(const std::string&, const pwiz::msdata::MSData&) const’: pwiz_tools/commandline/msconvert.cpp:89:30: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 89 | runId = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from ./pwiz/utility/misc/Filesystem.hpp:37, from pwiz_tools/commandline/msconvert.cpp:38: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:92:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 92 | string extension = bal::to_lower_copy(bfs::extension(runId)); | ~~~~~~~~~~~~~~^~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ pwiz_tools/commandline/msconvert.cpp:102:34: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 102 | runId = bfs::basename(runId); | ~~~~~~~~~~~~~^~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp: In function ‘void processFile(const std::string&, const Config&, const pwiz::msdata::ReaderList&)’: pwiz_tools/commandline/msconvert.cpp:873:88: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 873 | cerr << "Error writing run " << (i+1) << " in " << bfs::path(filename).leaf() << ":\n" << e.what() << endl; | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ./pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o msconvert pwiz_tools/commandline/msconvert.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/msconvert pwiz_tools/commandline/msconvert.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/mscat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/mscat.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/mscat.o pwiz_tools/examples/mscat.cpp &&\ mv -f $depbase.Tpo $depbase.Po In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/MSDataFile.hpp:29, from pwiz_tools/examples/mscat.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o mscat ./pwiz_tools/examples/mscat.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mscat ./pwiz_tools/examples/mscat.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_analyzer_2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/hello_analyzer_2.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/hello_analyzer_2.o pwiz_tools/examples/hello_analyzer_2.cpp &&\ mv -f $depbase.Tpo $depbase.Po In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from ./pwiz_tools/common/MSDataAnalyzerApplication.hpp:29, from pwiz_tools/examples/hello_analyzer_2.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o hello_analyzer_2 ./pwiz_tools/examples/hello_analyzer_2.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hello_analyzer_2 ./pwiz_tools/examples/hello_analyzer_2.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/idconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/commandline/idconvert.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/idconvert.o pwiz_tools/commandline/idconvert.cpp &&\ mv -f $depbase.Tpo $depbase.Po pwiz_tools/commandline/idconvert.cpp:204:32: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 204 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:204:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 204 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:543:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 543 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:543:50: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 543 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp: In member function ‘std::string Config::outputFilename(const std::string&, const pwiz::identdata::IdentData&, bool) const’: pwiz_tools/commandline/idconvert.cpp:66:35: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 66 | sourceName = bfs::basename(idd.dataCollection.inputs.spectraData[0]->name); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./pwiz/utility/misc/Filesystem.hpp:37, from pwiz_tools/commandline/idconvert.cpp:24: /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:68:35: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 68 | sourceName = bfs::basename(filename); | ~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp: In function ‘void processFile(const std::string&, const Config&, const pwiz::identdata::ReaderList&)’: pwiz_tools/commandline/idconvert.cpp:467:93: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 467 | cerr << "Error writing analysis " << (i+1) << " in " << bfs::path(filename).leaf() << ":\n" << e.what() << endl; | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/boost/filesystem/operations.hpp:20, from ./pwiz/utility/misc/Filesystem.hpp:36: /usr/include/boost/filesystem/path.hpp:1127:10: note: declared here 1127 | path leaf() const { return filename(); } | ^~~~ /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o idconvert pwiz_tools/commandline/idconvert.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/idconvert pwiz_tools/commandline/idconvert.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/write_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_example_files.o pwiz_tools/examples/write_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/MSDataFile.hpp:29, from pwiz_tools/examples/write_example_files.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o write_example_files ./pwiz_tools/examples/write_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_example_files ./pwiz_tools/examples/write_example_files.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_msdata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/hello_msdata.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/hello_msdata.o pwiz_tools/examples/hello_msdata.cpp &&\ mv -f $depbase.Tpo $depbase.Po In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/data/msdata/MSDataFile.hpp:29, from pwiz_tools/examples/hello_msdata.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o hello_msdata ./pwiz_tools/examples/hello_msdata.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hello_msdata ./pwiz_tools/examples/hello_msdata.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_mzid_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/write_mzid_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_mzid_example_files.o pwiz_tools/examples/write_mzid_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o write_mzid_example_files ./pwiz_tools/examples/write_mzid_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_mzid_example_files ./pwiz_tools/examples/write_mzid_example_files.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_analyzer.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/hello_analyzer.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/hello_analyzer.o pwiz_tools/examples/hello_analyzer.cpp &&\ mv -f $depbase.Tpo $depbase.Po In file included from ./pwiz/data/msdata/MSData.hpp:29, from ./pwiz/analysis/passive/MSDataAnalyzer.hpp:29, from ./pwiz_tools/common/MSDataAnalyzerApplication.hpp:29, from pwiz_tools/examples/hello_analyzer.cpp:24: ./pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from ./pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ./pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o hello_analyzer ./pwiz_tools/examples/hello_analyzer.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hello_analyzer ./pwiz_tools/examples/hello_analyzer.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_proteome_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/write_proteome_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_proteome_example_files.o pwiz_tools/examples/write_proteome_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o write_proteome_example_files ./pwiz_tools/examples/write_proteome_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_proteome_example_files ./pwiz_tools/examples/write_proteome_example_files.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/pepcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/commandline/pepcat.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/pepcat.o pwiz_tools/commandline/pepcat.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o pepcat pwiz_tools/commandline/pepcat.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/pepcat pwiz_tools/commandline/pepcat.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_traml_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ s390x-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ -DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/<>/debian/build/libraries/Eigen" -I "/<>/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/write_traml_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_traml_example_files.o pwiz_tools/examples/write_traml_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -L/usr/lib/s390x-linux-gnu -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o write_traml_example_files ./pwiz_tools/examples/write_traml_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: s390x-linux-gnu-g++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/libpwiz-3.0.18342-4.1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_traml_example_files ./pwiz_tools/examples/write_traml_example_files.o -L/usr/lib/s390x-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread make[1]: Leaving directory '/<>/debian/build' make[1]: Entering directory '/<>/debian/build' make[2]: Entering directory '/<>/debian/build' /usr/bin/mkdir -p '/<>/debian/build/usr/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libpwiz.la '/<>/debian/build/usr/lib' libtool: install: /usr/bin/install -c .libs/libpwiz.so.3.0.0 /<>/debian/build/usr/lib/libpwiz.so.3.0.0 libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so.3 || { rm -f libpwiz.so.3 && ln -s libpwiz.so.3.0.0 libpwiz.so.3; }; }) libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so || { rm -f libpwiz.so && ln -s libpwiz.so.3.0.0 libpwiz.so; }; }) libtool: install: /usr/bin/install -c .libs/libpwiz.lai /<>/debian/build/usr/lib/libpwiz.la libtool: install: /usr/bin/install -c .libs/libpwiz.a /<>/debian/build/usr/lib/libpwiz.a libtool: install: chmod 644 /<>/debian/build/usr/lib/libpwiz.a libtool: install: s390x-linux-gnu-ranlib /<>/debian/build/usr/lib/libpwiz.a libtool: warning: remember to run 'libtool --finish /usr/lib' /usr/bin/mkdir -p '/<>/debian/build/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c txt2mzml msconvert mscat hello_analyzer_2 idconvert write_example_files hello_msdata write_mzid_example_files hello_analyzer write_proteome_example_files pepcat write_traml_example_files '/<>/debian/build/usr/bin' libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/txt2mzml /<>/debian/build/usr/bin/txt2mzml libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/msconvert /<>/debian/build/usr/bin/msconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/mscat /<>/debian/build/usr/bin/mscat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer_2 /<>/debian/build/usr/bin/hello_analyzer_2 libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/idconvert /<>/debian/build/usr/bin/idconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_example_files /<>/debian/build/usr/bin/write_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_msdata /<>/debian/build/usr/bin/hello_msdata libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_mzid_example_files /<>/debian/build/usr/bin/write_mzid_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer /<>/debian/build/usr/bin/hello_analyzer libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_proteome_example_files /<>/debian/build/usr/bin/write_proteome_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/pepcat /<>/debian/build/usr/bin/pepcat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_traml_example_files /<>/debian/build/usr/bin/write_traml_example_files make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/<>/debian/build' make[1]: Leaving directory '/<>/debian/build' Removing the RPATH datum from the binaries. sh debian/remove-rpath-from-binaries.sh /<> sh debian/make-included-headers-hierarchy.sh debian/build/libraries/boost_aux/tools/bcp/bcp_imp.hpp debian/build/libraries/boost_aux/tools/bcp/fileview.hpp debian/build/libraries/boost_aux/tools/bcp/licence_info.hpp debian/build/libraries/boost_aux/tools/bcp/bcp.hpp debian/build/libraries/boost_aux/boost/nowide/windows.hpp debian/build/libraries/boost_aux/boost/nowide/cenv.hpp debian/build/libraries/boost_aux/boost/nowide/cstdlib.hpp debian/build/libraries/boost_aux/boost/nowide/cstdio.hpp debian/build/libraries/boost_aux/boost/nowide/config.hpp debian/build/libraries/boost_aux/boost/nowide/filebuf.hpp debian/build/libraries/boost_aux/boost/nowide/stackstring.hpp debian/build/libraries/boost_aux/boost/nowide/system.hpp debian/build/libraries/boost_aux/boost/nowide/iostream.hpp debian/build/libraries/boost_aux/boost/nowide/args.hpp debian/build/libraries/boost_aux/boost/nowide/convert.hpp debian/build/libraries/boost_aux/boost/nowide/fstream.hpp debian/build/libraries/boost_aux/boost/utility/detail/restricted.hpp debian/build/libraries/boost_aux/boost/utility/detail/member_dereference.hpp debian/build/libraries/boost_aux/boost/utility/detail/singleton_manager.hpp debian/build/libraries/boost_aux/boost/utility/singleton.hpp debian/build/libraries/boost_aux/boost/utility/thread_specific_singleton.hpp debian/build/libraries/boost_aux/boost/utility/mutexed_singleton.hpp debian/build/libraries/boost_aux/boost/iostreams/filter/base64.hpp debian/build/libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp debian/build/libraries/boost_aux/boost/enum.hpp debian/build/libraries/boost_aux/boost/enum/bitfield.hpp debian/build/libraries/boost_aux/boost/enum/iterator.hpp debian/build/libraries/boost_aux/boost/enum/macros.hpp debian/build/libraries/boost_aux/boost/enum/base.hpp debian/build/libraries/boost_aux/boost/foreach_field.hpp debian/build/libraries/CSpline/CSpline.h debian/build/libraries/doctest.h debian/build/libraries/libsvm-3.0/svm.h debian/build/libraries/Eigen/nnls.h debian/build/pwiz_tools/common/FullReaderList.hpp debian/build/pwiz_tools/common/MSDataAnalyzerApplication.hpp debian/build/pwiz/utility/proteome/IPIFASTADatabase.hpp debian/build/pwiz/utility/minimxml/SAXParser.hpp debian/build/pwiz/utility/minimxml/XMLWriter.hpp debian/build/pwiz/utility/math/round.hpp debian/build/pwiz/utility/math/Parabola.hpp debian/build/pwiz/utility/math/HouseholderQR.hpp debian/build/pwiz/utility/math/Types.hpp debian/build/pwiz/utility/math/OrderedPair.hpp debian/build/pwiz/utility/math/MatchedFilter.hpp debian/build/pwiz/utility/math/LinearLeastSquares.hpp debian/build/pwiz/utility/math/qr.hpp debian/build/pwiz/utility/math/Stats.hpp debian/build/pwiz/utility/math/erf.hpp debian/build/pwiz/utility/math/LinearSolver.hpp debian/build/pwiz/utility/math/MatrixInverse.hpp debian/build/pwiz/utility/chemistry/IsotopeCalculator.hpp debian/build/pwiz/utility/chemistry/IsotopeTable.hpp debian/build/pwiz/utility/chemistry/Ion.hpp debian/build/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp debian/build/pwiz/utility/chemistry/MZTolerance.hpp debian/build/pwiz/utility/chemistry/Chemistry.hpp debian/build/pwiz/utility/chemistry/ChemistryData.hpp debian/build/pwiz/utility/misc/unit.hpp debian/build/pwiz/utility/misc/Environment.hpp debian/build/pwiz/utility/misc/virtual_map.hpp debian/build/pwiz/utility/misc/Singleton.hpp debian/build/pwiz/utility/misc/mru_list.hpp debian/build/pwiz/utility/misc/SHA1.h debian/build/pwiz/utility/misc/IterationListener.hpp debian/build/pwiz/utility/misc/VendorReaderTestHarness.hpp debian/build/pwiz/utility/misc/pinned_gcroot.h debian/build/pwiz/utility/misc/Once.hpp debian/build/pwiz/utility/misc/Std.hpp debian/build/pwiz/utility/misc/MSIHandler.hpp debian/build/pwiz/utility/misc/BinaryData.hpp debian/build/pwiz/utility/misc/cpp_cli_utilities.hpp debian/build/pwiz/utility/misc/SHA1Calculator.hpp debian/build/pwiz/utility/misc/String.hpp debian/build/pwiz/utility/misc/optimized_lexical_cast.hpp debian/build/pwiz/utility/misc/Export.hpp debian/build/pwiz/utility/misc/Image.hpp debian/build/pwiz/utility/misc/random_access_compressed_ifstream.hpp debian/build/pwiz/utility/misc/CharIndexedVector.hpp debian/build/pwiz/utility/misc/IntegerSet.hpp debian/build/pwiz/utility/misc/TabReader.hpp debian/build/pwiz/utility/misc/ClickwrapPrompter.hpp debian/build/pwiz/utility/misc/Stream.hpp debian/build/pwiz/utility/misc/Timer.hpp debian/build/pwiz/utility/misc/Base64.hpp debian/build/pwiz/utility/misc/Exception.hpp debian/build/pwiz/utility/misc/SHA1_ostream.hpp debian/build/pwiz/utility/misc/Filesystem.hpp debian/build/pwiz/utility/misc/shared_map.hpp debian/build/pwiz/utility/misc/DateTime.hpp debian/build/pwiz/utility/misc/Container.hpp debian/build/pwiz/utility/misc/endian.hpp debian/build/pwiz/utility/misc/almost_equal.hpp debian/build/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp debian/build/pwiz/utility/findmf/base/ms/simplepicker.hpp debian/build/pwiz/utility/findmf/base/filter/filter.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/gauss.hpp debian/build/pwiz/utility/findmf/base/filter/gaussfilter.hpp debian/build/pwiz/utility/findmf/base/base/scale.hpp debian/build/pwiz/utility/findmf/base/base/constants.hpp debian/build/pwiz/utility/findmf/base/base/copyif.hpp debian/build/pwiz/utility/findmf/base/base/cumsum.hpp debian/build/pwiz/utility/findmf/base/base/diff.hpp debian/build/pwiz/utility/findmf/base/base/utilities/interpolation.hpp debian/build/pwiz/utility/findmf/base/base/utilities/base.hpp debian/build/pwiz/utility/findmf/base/base/base.hpp debian/build/pwiz/utility/findmf/base/base/interpolate.hpp debian/build/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp debian/build/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/breakspec.hpp debian/build/pwiz/utility/findmf/base/resample/bin1d.hpp debian/build/pwiz/utility/findmf/base/resample/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/convert2dense.hpp debian/build/pwiz/utility/findmf/base/resample/bucket1d.hpp debian/build/pwiz/Version.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp debian/build/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetector.hpp debian/build/pwiz/analysis/peakdetect/PeakelPicker.hpp debian/build/pwiz/analysis/peakdetect/MZRTField.hpp debian/build/pwiz/analysis/peakdetect/PeakExtractor.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp debian/build/pwiz/analysis/peakdetect/FeatureModeler.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp debian/build/pwiz/analysis/peakdetect/PeakFinder.hpp debian/build/pwiz/analysis/peakdetect/Noise.hpp debian/build/pwiz/analysis/peakdetect/PeakFitter.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp debian/build/pwiz/analysis/peakdetect/PeakelGrower.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp debian/build/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp debian/build/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp debian/build/pwiz/analysis/Version.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp debian/build/pwiz/analysis/frequency/ParameterEstimator.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp debian/build/pwiz/analysis/frequency/ParametrizedFunction.hpp debian/build/pwiz/analysis/frequency/DerivativeTest.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetectorNaive.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzian.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimator.hpp debian/build/pwiz/analysis/frequency/PeakDetector.hpp debian/build/pwiz/analysis/demux/DemuxDebugReader.hpp debian/build/pwiz/analysis/demux/DemuxHelpers.hpp debian/build/pwiz/analysis/demux/MatrixIO.hpp debian/build/pwiz/analysis/demux/IPrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/DemuxSolver.hpp debian/build/pwiz/analysis/demux/IDemultiplexer.hpp debian/build/pwiz/analysis/demux/DemuxTypes.hpp debian/build/pwiz/analysis/demux/DemuxDebugWriter.hpp debian/build/pwiz/analysis/demux/OverlapDemultiplexer.hpp debian/build/pwiz/analysis/demux/CubicHermiteSpline.hpp debian/build/pwiz/analysis/demux/EnumConstantNotPresentException.hpp debian/build/pwiz/analysis/demux/IInterpolation.hpp debian/build/pwiz/analysis/demux/PrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/SpectrumPeakExtractor.hpp debian/build/pwiz/analysis/demux/MSXDemultiplexer.hpp debian/build/pwiz/analysis/passive/SpectrumTable.hpp debian/build/pwiz/analysis/passive/MSDataAnalyzer.hpp debian/build/pwiz/analysis/passive/SpectrumBinaryData.hpp debian/build/pwiz/analysis/passive/MetadataReporter.hpp debian/build/pwiz/analysis/passive/PepXMLCat.hpp debian/build/pwiz/analysis/passive/RegionTIC.hpp debian/build/pwiz/analysis/passive/RegionAnalyzer.hpp debian/build/pwiz/analysis/passive/RegionSlice.hpp debian/build/pwiz/analysis/passive/MSDataCache.hpp debian/build/pwiz/analysis/passive/RegionSIC.hpp debian/build/pwiz/analysis/passive/RunSummary.hpp debian/build/pwiz/analysis/passive/TabularConfig.hpp debian/build/pwiz/analysis/common/CwtPeakDetector.hpp debian/build/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp debian/build/pwiz/analysis/common/LocalMaximumPeakDetector.hpp debian/build/pwiz/analysis/common/DataFilter.hpp debian/build/pwiz/analysis/common/WhittakerSmoother.hpp debian/build/pwiz/analysis/common/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/common/Smoother.hpp debian/build/pwiz/analysis/common/ZeroSampleFiller.hpp debian/build/pwiz/analysis/common/PeakDetector.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp debian/build/pwiz/analysis/proteome_processing/ProteinListFactory.hpp debian/build/pwiz/analysis/peptideid/PeptideID.hpp debian/build/pwiz/analysis/peptideid/PeptideID_flat.hpp debian/build/pwiz/analysis/peptideid/PeptideIDMap.hpp debian/build/pwiz/analysis/peptideid/PeptideID_pepXML.hpp debian/build/pwiz/data/tradata/examples.hpp debian/build/pwiz/data/tradata/Reader.hpp debian/build/pwiz/data/tradata/Diff.hpp debian/build/pwiz/data/tradata/Version.hpp debian/build/pwiz/data/tradata/TraDataFile.hpp debian/build/pwiz/data/tradata/IO.hpp debian/build/pwiz/data/tradata/TextWriter.hpp debian/build/pwiz/data/tradata/References.hpp debian/build/pwiz/data/tradata/TraData.hpp debian/build/pwiz/data/tradata/DefaultReaderList.hpp debian/build/pwiz/data/tradata/Serializer_traML.hpp debian/build/pwiz/data/identdata/examples.hpp debian/build/pwiz/data/identdata/Reader.hpp debian/build/pwiz/data/identdata/Diff.hpp debian/build/pwiz/data/identdata/Version.hpp debian/build/pwiz/data/identdata/Serializer_Text.hpp debian/build/pwiz/data/identdata/IdentDataFile.hpp debian/build/pwiz/data/identdata/IdentData.hpp debian/build/pwiz/data/identdata/MascotReader.hpp debian/build/pwiz/data/identdata/IO.hpp debian/build/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz/data/identdata/References.hpp debian/build/pwiz/data/identdata/Serializer_pepXML.hpp debian/build/pwiz/data/identdata/DelimReader.hpp debian/build/pwiz/data/identdata/Pep2MzIdent.hpp debian/build/pwiz/data/identdata/Serializer_protXML.hpp debian/build/pwiz/data/identdata/KwCVMap.hpp debian/build/pwiz/data/identdata/DelimWriter.hpp debian/build/pwiz/data/identdata/Serializer_mzid.hpp debian/build/pwiz/data/identdata/MzidPredicates.hpp debian/build/pwiz/data/identdata/DefaultReaderList.hpp debian/build/pwiz/data/proteome/examples.hpp debian/build/pwiz/data/proteome/ProteomeData.hpp debian/build/pwiz/data/proteome/AminoAcid.hpp debian/build/pwiz/data/proteome/Reader.hpp debian/build/pwiz/data/proteome/ProteinListCache.hpp debian/build/pwiz/data/proteome/Diff.hpp debian/build/pwiz/data/proteome/Modification.hpp debian/build/pwiz/data/proteome/Version.hpp debian/build/pwiz/data/proteome/Peptide.hpp debian/build/pwiz/data/proteome/Serializer_FASTA.hpp debian/build/pwiz/data/proteome/TextWriter.hpp debian/build/pwiz/data/proteome/ProteinListWrapper.hpp debian/build/pwiz/data/proteome/Reader_FASTA.hpp debian/build/pwiz/data/proteome/Digestion.hpp debian/build/pwiz/data/proteome/DefaultReaderList.hpp debian/build/pwiz/data/proteome/ProteomeDataFile.hpp debian/build/pwiz/data/msdata/SpectrumList_MGF.hpp debian/build/pwiz/data/msdata/examples.hpp debian/build/pwiz/data/msdata/SpectrumList_MSn.hpp debian/build/pwiz/data/msdata/SpectrumListBase.hpp debian/build/pwiz/data/msdata/Reader.hpp debian/build/pwiz/data/msdata/MSDataMerger.hpp debian/build/pwiz/data/msdata/LegacyAdapter.hpp debian/build/pwiz/data/msdata/Diff.hpp debian/build/pwiz/data/msdata/Version.hpp debian/build/pwiz/data/msdata/SpectrumWorkerThreads.hpp debian/build/pwiz/data/msdata/Index_mzML.hpp debian/build/pwiz/data/msdata/BinaryDataEncoder.hpp debian/build/pwiz/data/msdata/SpectrumIterator.hpp debian/build/pwiz/data/msdata/ChromatogramList_mzML.hpp debian/build/pwiz/data/msdata/Serializer_MGF.hpp debian/build/pwiz/data/msdata/Serializer_mzML.hpp debian/build/pwiz/data/msdata/IO.hpp debian/build/pwiz/data/msdata/Serializer_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumList_BTDX.hpp debian/build/pwiz/data/msdata/SpectrumList_mzXML.hpp debian/build/pwiz/data/msdata/TextWriter.hpp debian/build/pwiz/data/msdata/References.hpp debian/build/pwiz/data/msdata/Serializer_MSn.hpp debian/build/pwiz/data/msdata/SpectrumInfo.hpp debian/build/pwiz/data/msdata/MSData.hpp debian/build/pwiz/data/msdata/MSNumpress.hpp debian/build/pwiz/data/msdata/MSDataFile.hpp debian/build/pwiz/data/msdata/SpectrumList_mzML.hpp debian/build/pwiz/data/msdata/SpectrumListCache.hpp debian/build/pwiz/data/msdata/MemoryMRUCache.hpp debian/build/pwiz/data/msdata/DefaultReaderList.hpp debian/build/pwiz/data/msdata/ChromatogramListBase.hpp debian/build/pwiz/data/msdata/SpectrumListWrapper.hpp debian/build/pwiz/data/msdata/SHA1OutputObserver.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp debian/build/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp debian/build/pwiz/data/vendor_readers/ExtendedReaderList.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp debian/build/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp debian/build/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp debian/build/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp debian/build/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp debian/build/pwiz/data/misc/CalibrationParameters.hpp debian/build/pwiz/data/misc/FrequencyData.hpp debian/build/pwiz/data/misc/FrequencyDataTestData.hpp debian/build/pwiz/data/misc/MinimumPepXML.hpp debian/build/pwiz/data/misc/PeakData.hpp debian/build/pwiz/data/misc/SampleDatum.hpp debian/build/pwiz/data/common/Unimod.hpp debian/build/pwiz/data/common/MemoryIndex.hpp debian/build/pwiz/data/common/obo.hpp debian/build/pwiz/data/common/ParamTypes.hpp debian/build/pwiz/data/common/diff_std.hpp debian/build/pwiz/data/common/Index.hpp debian/build/pwiz/data/common/CVTranslator.hpp debian/build/pwiz/data/common/BinaryIndexStream.hpp debian/build/pwiz/data/common/cv.hpp doc/dox/mainpage.hpp .pc/gcc-boost-fail-cast-tribool-to-bool-force-it.patch/pwiz/data/identdata/TextWriter.hpp docbook-to-man debian/msconvert.sgml > debian/msconvert.1 docbook-to-man debian/idconvert.sgml > debian/idconvert.1 docbook-to-man debian/mscat.sgml > debian/mscat.1 docbook-to-man debian/txt2mzml.sgml > debian/txt2mzml.1 touch build-arch-stamp fakeroot debian/rules binary-arch "---------------------------------------" DEB_HOST_GNU_TYPE: s390x-linux-gnu DEB_BUILD_GNU_TYPE s390x-linux-gnu DEB_BUILD_OPTIONS: parallel=4 DEB_HOST_MULTIARCH: s390x-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3t64.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3t64/ debian/libpwiz3t64/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /<>/debian/build cp -rpf autotools libraries pwiz pwiz_tools /<>/debian/build echo "BOOST_LDPATH = /usr/lib/s390x-linux-gnu" > /<>/debian/build/autotools/Makefile.am-tmp cat /<>/debian/build/autotools/Makefile.am >> /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/Eigen"|' /<>/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/<>/debian/build/libraries/libsvm-3.0"|' /<>/debian/build/autotools/Makefile.am-tmp mv /<>/debian/build/autotools/Makefile.am-tmp /<>/debian/build/autotools/Makefile.am rm -f /<>/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /<>/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr --build=s390x-linux-gnu --host=s390x-linux-gnu libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:11: You should run autoupdate. libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:11: the top level configure.ac:42: warning: The macro `BOOST_THREADS' is obsolete. configure.ac:42: You should run autoupdate. boost.m4:1306: BOOST_THREADS is expanded from... configure.ac:42: the top level configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C11 features... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by s390x-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/s390x-linux-gnu-nm -B checking the name lister (/usr/bin/s390x-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for s390x-linux-gnu-file... no checking for file... file checking for s390x-linux-gnu-objdump... s390x-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for s390x-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking for archiver @FILE support... @ checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking command to parse /usr/bin/s390x-linux-gnu-nm -B output from s390x-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for s390x-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if s390x-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for s390x-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-gcc static flag -static works... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking for s390x-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of s390x-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... s390x-linux-gnu-g++ -E checking for ld used by s390x-linux-gnu-g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the s390x-linux-gnu-g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for s390x-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-g++ static flag -static works... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for s390x-linux-gnu-gcc... (cached) s390x-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether s390x-linux-gnu-gcc accepts -g... (cached) yes checking for s390x-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of s390x-linux-gnu-gcc... (cached) gcc3 checking for fcntl.h... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for memory.h... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/ioctl.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int32_t... yes checking for int64_t... yes checking for off_t... yes checking for C/C++ restrict keyword... __restrict__ checking for size_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for ptrdiff_t... yes checking for error_at_line... yes checking for GNU libc compatible malloc... yes checking for alarm... yes checking for working mktime... yes checking for GNU libc compatible realloc... yes checking for atexit... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for modf... yes checking for pow... no checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for strtoull... yes checking for Boost headers version >= 1.43.0... yes checking for Boost's header version... 1_83 checking for the flags needed to use pthreads... conftest.cpp: In function 'int main()': conftest.cpp:62:22: warning: argument 1 null where non-null expected [-Wnonnull] 62 | pthread_attr_init(0); pthread_cleanup_push(0, 0); | ~~~~~~~~~~~~~~~~~^~~ In file included from conftest.cpp:57: /usr/include/pthread.h:285:12: note: in a call to function 'int pthread_attr_init(pthread_attr_t*)' declared 'nonnull' 285 | extern int pthread_attr_init (pthread_attr_t *__attr) __THROW __nonnull ((1)); | ^~~~~~~~~~~~~~~~~ conftest.cpp:63:19: warning: argument 1 null where non-null expected [-Wnonnull] 63 | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/pthread.h:202:12: note: in a call to function 'int pthread_create(pthread_t*, const pthread_attr_t*, void* (*)(void*), void*)' declared 'nonnull' 202 | extern int pthread_create (pthread_t *__restrict __newthread, | ^~~~~~~~~~~~~~ conftest.cpp:63:19: warning: argument 3 null where non-null expected [-Wnonnull] 63 | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/pthread.h:202:12: note: in a call to function 'int pthread_create(pthread_t*, const pthread_attr_t*, void* (*)(void*), void*)' declared 'nonnull' 202 | extern int pthread_create (pthread_t *__restrict __newthread, | ^~~~~~~~~~~~~~ -pthread checking for the toolset name used by Boost for s390x-linux-gnu-g++... configure: WARNING: could not figure out which toolset name to use for s390x-linux-gnu-g++ checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking for boost/thread.hpp... yes checking for the Boost thread library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/filesystem/path.hpp... yes checking for the Boost filesystem library... (cached) yes checking for boost/regex.hpp... yes checking for the Boost regex library... (cached) yes checking for boost/archive/text_oarchive.hpp... yes checking for the Boost serialization library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking for boost/chrono.hpp... yes checking for the Boost chrono library... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /<>/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/s390x-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/<>/debian/build /usr/bin/make install make[1]: Entering directory '/<>/debian/build' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/debian/build' make[1]: Entering directory '/<>/debian/build' make[2]: Entering directory '/<>/debian/build' /usr/bin/mkdir -p '/<>/debian/build/usr/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libpwiz.la '/<>/debian/build/usr/lib' libtool: install: /usr/bin/install -c .libs/libpwiz.so.3.0.0 /<>/debian/build/usr/lib/libpwiz.so.3.0.0 libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so.3 || { rm -f libpwiz.so.3 && ln -s libpwiz.so.3.0.0 libpwiz.so.3; }; }) libtool: install: (cd /<>/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so || { rm -f libpwiz.so && ln -s libpwiz.so.3.0.0 libpwiz.so; }; }) libtool: install: /usr/bin/install -c .libs/libpwiz.lai /<>/debian/build/usr/lib/libpwiz.la libtool: install: /usr/bin/install -c .libs/libpwiz.a /<>/debian/build/usr/lib/libpwiz.a libtool: install: chmod 644 /<>/debian/build/usr/lib/libpwiz.a libtool: install: s390x-linux-gnu-ranlib /<>/debian/build/usr/lib/libpwiz.a libtool: warning: remember to run 'libtool --finish /usr/lib' /usr/bin/mkdir -p '/<>/debian/build/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c txt2mzml msconvert mscat hello_analyzer_2 idconvert write_example_files hello_msdata write_mzid_example_files hello_analyzer write_proteome_example_files pepcat write_traml_example_files '/<>/debian/build/usr/bin' libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/txt2mzml /<>/debian/build/usr/bin/txt2mzml libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/msconvert /<>/debian/build/usr/bin/msconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/mscat /<>/debian/build/usr/bin/mscat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer_2 /<>/debian/build/usr/bin/hello_analyzer_2 libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/idconvert /<>/debian/build/usr/bin/idconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_example_files /<>/debian/build/usr/bin/write_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_msdata /<>/debian/build/usr/bin/hello_msdata libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_mzid_example_files /<>/debian/build/usr/bin/write_mzid_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer /<>/debian/build/usr/bin/hello_analyzer libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_proteome_example_files /<>/debian/build/usr/bin/write_proteome_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/pepcat /<>/debian/build/usr/bin/pepcat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_traml_example_files /<>/debian/build/usr/bin/write_traml_example_files make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/<>/debian/build' make[1]: Leaving directory '/<>/debian/build' Removing the RPATH datum from the binaries. sh debian/remove-rpath-from-binaries.sh /<> sh debian/make-included-headers-hierarchy.sh debian/build/libraries/boost_aux/tools/bcp/bcp_imp.hpp debian/build/libraries/boost_aux/tools/bcp/fileview.hpp debian/build/libraries/boost_aux/tools/bcp/licence_info.hpp debian/build/libraries/boost_aux/tools/bcp/bcp.hpp debian/build/libraries/boost_aux/boost/nowide/windows.hpp debian/build/libraries/boost_aux/boost/nowide/cenv.hpp debian/build/libraries/boost_aux/boost/nowide/cstdlib.hpp debian/build/libraries/boost_aux/boost/nowide/cstdio.hpp debian/build/libraries/boost_aux/boost/nowide/config.hpp debian/build/libraries/boost_aux/boost/nowide/filebuf.hpp debian/build/libraries/boost_aux/boost/nowide/stackstring.hpp debian/build/libraries/boost_aux/boost/nowide/system.hpp debian/build/libraries/boost_aux/boost/nowide/iostream.hpp debian/build/libraries/boost_aux/boost/nowide/args.hpp debian/build/libraries/boost_aux/boost/nowide/convert.hpp debian/build/libraries/boost_aux/boost/nowide/fstream.hpp debian/build/libraries/boost_aux/boost/utility/detail/restricted.hpp debian/build/libraries/boost_aux/boost/utility/detail/member_dereference.hpp debian/build/libraries/boost_aux/boost/utility/detail/singleton_manager.hpp debian/build/libraries/boost_aux/boost/utility/singleton.hpp debian/build/libraries/boost_aux/boost/utility/thread_specific_singleton.hpp debian/build/libraries/boost_aux/boost/utility/mutexed_singleton.hpp debian/build/libraries/boost_aux/boost/iostreams/filter/base64.hpp debian/build/libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp debian/build/libraries/boost_aux/boost/enum.hpp debian/build/libraries/boost_aux/boost/enum/bitfield.hpp debian/build/libraries/boost_aux/boost/enum/iterator.hpp debian/build/libraries/boost_aux/boost/enum/macros.hpp debian/build/libraries/boost_aux/boost/enum/base.hpp debian/build/libraries/boost_aux/boost/foreach_field.hpp debian/build/libraries/CSpline/CSpline.h debian/build/libraries/doctest.h debian/build/libraries/libsvm-3.0/svm.h debian/build/libraries/Eigen/nnls.h debian/build/pwiz_tools/common/FullReaderList.hpp debian/build/pwiz_tools/common/MSDataAnalyzerApplication.hpp debian/build/pwiz/utility/proteome/IPIFASTADatabase.hpp debian/build/pwiz/utility/minimxml/SAXParser.hpp debian/build/pwiz/utility/minimxml/XMLWriter.hpp debian/build/pwiz/utility/math/round.hpp debian/build/pwiz/utility/math/Parabola.hpp debian/build/pwiz/utility/math/HouseholderQR.hpp debian/build/pwiz/utility/math/Types.hpp debian/build/pwiz/utility/math/OrderedPair.hpp debian/build/pwiz/utility/math/MatchedFilter.hpp debian/build/pwiz/utility/math/LinearLeastSquares.hpp debian/build/pwiz/utility/math/qr.hpp debian/build/pwiz/utility/math/Stats.hpp debian/build/pwiz/utility/math/erf.hpp debian/build/pwiz/utility/math/LinearSolver.hpp debian/build/pwiz/utility/math/MatrixInverse.hpp debian/build/pwiz/utility/chemistry/IsotopeCalculator.hpp debian/build/pwiz/utility/chemistry/IsotopeTable.hpp debian/build/pwiz/utility/chemistry/Ion.hpp debian/build/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp debian/build/pwiz/utility/chemistry/MZTolerance.hpp debian/build/pwiz/utility/chemistry/Chemistry.hpp debian/build/pwiz/utility/chemistry/ChemistryData.hpp debian/build/pwiz/utility/misc/unit.hpp debian/build/pwiz/utility/misc/Environment.hpp debian/build/pwiz/utility/misc/virtual_map.hpp debian/build/pwiz/utility/misc/Singleton.hpp debian/build/pwiz/utility/misc/mru_list.hpp debian/build/pwiz/utility/misc/SHA1.h debian/build/pwiz/utility/misc/IterationListener.hpp debian/build/pwiz/utility/misc/VendorReaderTestHarness.hpp debian/build/pwiz/utility/misc/pinned_gcroot.h debian/build/pwiz/utility/misc/Once.hpp debian/build/pwiz/utility/misc/Std.hpp debian/build/pwiz/utility/misc/MSIHandler.hpp debian/build/pwiz/utility/misc/BinaryData.hpp debian/build/pwiz/utility/misc/cpp_cli_utilities.hpp debian/build/pwiz/utility/misc/SHA1Calculator.hpp debian/build/pwiz/utility/misc/String.hpp debian/build/pwiz/utility/misc/optimized_lexical_cast.hpp debian/build/pwiz/utility/misc/Export.hpp debian/build/pwiz/utility/misc/Image.hpp debian/build/pwiz/utility/misc/random_access_compressed_ifstream.hpp debian/build/pwiz/utility/misc/CharIndexedVector.hpp debian/build/pwiz/utility/misc/IntegerSet.hpp debian/build/pwiz/utility/misc/TabReader.hpp debian/build/pwiz/utility/misc/ClickwrapPrompter.hpp debian/build/pwiz/utility/misc/Stream.hpp debian/build/pwiz/utility/misc/Timer.hpp debian/build/pwiz/utility/misc/Base64.hpp debian/build/pwiz/utility/misc/Exception.hpp debian/build/pwiz/utility/misc/SHA1_ostream.hpp debian/build/pwiz/utility/misc/Filesystem.hpp debian/build/pwiz/utility/misc/shared_map.hpp debian/build/pwiz/utility/misc/DateTime.hpp debian/build/pwiz/utility/misc/Container.hpp debian/build/pwiz/utility/misc/endian.hpp debian/build/pwiz/utility/misc/almost_equal.hpp debian/build/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp debian/build/pwiz/utility/findmf/base/ms/simplepicker.hpp debian/build/pwiz/utility/findmf/base/filter/filter.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/gauss.hpp debian/build/pwiz/utility/findmf/base/filter/gaussfilter.hpp debian/build/pwiz/utility/findmf/base/base/scale.hpp debian/build/pwiz/utility/findmf/base/base/constants.hpp debian/build/pwiz/utility/findmf/base/base/copyif.hpp debian/build/pwiz/utility/findmf/base/base/cumsum.hpp debian/build/pwiz/utility/findmf/base/base/diff.hpp debian/build/pwiz/utility/findmf/base/base/utilities/interpolation.hpp debian/build/pwiz/utility/findmf/base/base/utilities/base.hpp debian/build/pwiz/utility/findmf/base/base/base.hpp debian/build/pwiz/utility/findmf/base/base/interpolate.hpp debian/build/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp debian/build/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/breakspec.hpp debian/build/pwiz/utility/findmf/base/resample/bin1d.hpp debian/build/pwiz/utility/findmf/base/resample/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/convert2dense.hpp debian/build/pwiz/utility/findmf/base/resample/bucket1d.hpp debian/build/pwiz/Version.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp debian/build/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetector.hpp debian/build/pwiz/analysis/peakdetect/PeakelPicker.hpp debian/build/pwiz/analysis/peakdetect/MZRTField.hpp debian/build/pwiz/analysis/peakdetect/PeakExtractor.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp debian/build/pwiz/analysis/peakdetect/FeatureModeler.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp debian/build/pwiz/analysis/peakdetect/PeakFinder.hpp debian/build/pwiz/analysis/peakdetect/Noise.hpp debian/build/pwiz/analysis/peakdetect/PeakFitter.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp debian/build/pwiz/analysis/peakdetect/PeakelGrower.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp debian/build/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp debian/build/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp debian/build/pwiz/analysis/Version.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp debian/build/pwiz/analysis/frequency/ParameterEstimator.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp debian/build/pwiz/analysis/frequency/ParametrizedFunction.hpp debian/build/pwiz/analysis/frequency/DerivativeTest.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetectorNaive.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzian.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimator.hpp debian/build/pwiz/analysis/frequency/PeakDetector.hpp debian/build/pwiz/analysis/demux/DemuxDebugReader.hpp debian/build/pwiz/analysis/demux/DemuxHelpers.hpp debian/build/pwiz/analysis/demux/MatrixIO.hpp debian/build/pwiz/analysis/demux/IPrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/DemuxSolver.hpp debian/build/pwiz/analysis/demux/IDemultiplexer.hpp debian/build/pwiz/analysis/demux/DemuxTypes.hpp debian/build/pwiz/analysis/demux/DemuxDebugWriter.hpp debian/build/pwiz/analysis/demux/OverlapDemultiplexer.hpp debian/build/pwiz/analysis/demux/CubicHermiteSpline.hpp debian/build/pwiz/analysis/demux/EnumConstantNotPresentException.hpp debian/build/pwiz/analysis/demux/IInterpolation.hpp debian/build/pwiz/analysis/demux/PrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/SpectrumPeakExtractor.hpp debian/build/pwiz/analysis/demux/MSXDemultiplexer.hpp debian/build/pwiz/analysis/passive/SpectrumTable.hpp debian/build/pwiz/analysis/passive/MSDataAnalyzer.hpp debian/build/pwiz/analysis/passive/SpectrumBinaryData.hpp debian/build/pwiz/analysis/passive/MetadataReporter.hpp debian/build/pwiz/analysis/passive/PepXMLCat.hpp debian/build/pwiz/analysis/passive/RegionTIC.hpp debian/build/pwiz/analysis/passive/RegionAnalyzer.hpp debian/build/pwiz/analysis/passive/RegionSlice.hpp debian/build/pwiz/analysis/passive/MSDataCache.hpp debian/build/pwiz/analysis/passive/RegionSIC.hpp debian/build/pwiz/analysis/passive/RunSummary.hpp debian/build/pwiz/analysis/passive/TabularConfig.hpp debian/build/pwiz/analysis/common/CwtPeakDetector.hpp debian/build/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp debian/build/pwiz/analysis/common/LocalMaximumPeakDetector.hpp debian/build/pwiz/analysis/common/DataFilter.hpp debian/build/pwiz/analysis/common/WhittakerSmoother.hpp debian/build/pwiz/analysis/common/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/common/Smoother.hpp debian/build/pwiz/analysis/common/ZeroSampleFiller.hpp debian/build/pwiz/analysis/common/PeakDetector.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp debian/build/pwiz/analysis/proteome_processing/ProteinListFactory.hpp debian/build/pwiz/analysis/peptideid/PeptideID.hpp debian/build/pwiz/analysis/peptideid/PeptideID_flat.hpp debian/build/pwiz/analysis/peptideid/PeptideIDMap.hpp debian/build/pwiz/analysis/peptideid/PeptideID_pepXML.hpp debian/build/pwiz/data/tradata/examples.hpp debian/build/pwiz/data/tradata/Reader.hpp debian/build/pwiz/data/tradata/Diff.hpp debian/build/pwiz/data/tradata/Version.hpp debian/build/pwiz/data/tradata/TraDataFile.hpp debian/build/pwiz/data/tradata/IO.hpp debian/build/pwiz/data/tradata/TextWriter.hpp debian/build/pwiz/data/tradata/References.hpp debian/build/pwiz/data/tradata/TraData.hpp debian/build/pwiz/data/tradata/DefaultReaderList.hpp debian/build/pwiz/data/tradata/Serializer_traML.hpp debian/build/pwiz/data/identdata/examples.hpp debian/build/pwiz/data/identdata/Reader.hpp debian/build/pwiz/data/identdata/Diff.hpp debian/build/pwiz/data/identdata/Version.hpp debian/build/pwiz/data/identdata/Serializer_Text.hpp debian/build/pwiz/data/identdata/IdentDataFile.hpp debian/build/pwiz/data/identdata/IdentData.hpp debian/build/pwiz/data/identdata/MascotReader.hpp debian/build/pwiz/data/identdata/IO.hpp debian/build/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz/data/identdata/References.hpp debian/build/pwiz/data/identdata/Serializer_pepXML.hpp debian/build/pwiz/data/identdata/DelimReader.hpp debian/build/pwiz/data/identdata/Pep2MzIdent.hpp debian/build/pwiz/data/identdata/Serializer_protXML.hpp debian/build/pwiz/data/identdata/KwCVMap.hpp debian/build/pwiz/data/identdata/DelimWriter.hpp debian/build/pwiz/data/identdata/Serializer_mzid.hpp debian/build/pwiz/data/identdata/MzidPredicates.hpp debian/build/pwiz/data/identdata/DefaultReaderList.hpp debian/build/pwiz/data/proteome/examples.hpp debian/build/pwiz/data/proteome/ProteomeData.hpp debian/build/pwiz/data/proteome/AminoAcid.hpp debian/build/pwiz/data/proteome/Reader.hpp debian/build/pwiz/data/proteome/ProteinListCache.hpp debian/build/pwiz/data/proteome/Diff.hpp debian/build/pwiz/data/proteome/Modification.hpp debian/build/pwiz/data/proteome/Version.hpp debian/build/pwiz/data/proteome/Peptide.hpp debian/build/pwiz/data/proteome/Serializer_FASTA.hpp debian/build/pwiz/data/proteome/TextWriter.hpp debian/build/pwiz/data/proteome/ProteinListWrapper.hpp debian/build/pwiz/data/proteome/Reader_FASTA.hpp debian/build/pwiz/data/proteome/Digestion.hpp debian/build/pwiz/data/proteome/DefaultReaderList.hpp debian/build/pwiz/data/proteome/ProteomeDataFile.hpp debian/build/pwiz/data/msdata/SpectrumList_MGF.hpp debian/build/pwiz/data/msdata/examples.hpp debian/build/pwiz/data/msdata/SpectrumList_MSn.hpp debian/build/pwiz/data/msdata/SpectrumListBase.hpp debian/build/pwiz/data/msdata/Reader.hpp debian/build/pwiz/data/msdata/MSDataMerger.hpp debian/build/pwiz/data/msdata/LegacyAdapter.hpp debian/build/pwiz/data/msdata/Diff.hpp debian/build/pwiz/data/msdata/Version.hpp debian/build/pwiz/data/msdata/SpectrumWorkerThreads.hpp debian/build/pwiz/data/msdata/Index_mzML.hpp debian/build/pwiz/data/msdata/BinaryDataEncoder.hpp debian/build/pwiz/data/msdata/SpectrumIterator.hpp debian/build/pwiz/data/msdata/ChromatogramList_mzML.hpp debian/build/pwiz/data/msdata/Serializer_MGF.hpp debian/build/pwiz/data/msdata/Serializer_mzML.hpp debian/build/pwiz/data/msdata/IO.hpp debian/build/pwiz/data/msdata/Serializer_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumList_BTDX.hpp debian/build/pwiz/data/msdata/SpectrumList_mzXML.hpp debian/build/pwiz/data/msdata/TextWriter.hpp debian/build/pwiz/data/msdata/References.hpp debian/build/pwiz/data/msdata/Serializer_MSn.hpp debian/build/pwiz/data/msdata/SpectrumInfo.hpp debian/build/pwiz/data/msdata/MSData.hpp debian/build/pwiz/data/msdata/MSNumpress.hpp debian/build/pwiz/data/msdata/MSDataFile.hpp debian/build/pwiz/data/msdata/SpectrumList_mzML.hpp debian/build/pwiz/data/msdata/SpectrumListCache.hpp debian/build/pwiz/data/msdata/MemoryMRUCache.hpp debian/build/pwiz/data/msdata/DefaultReaderList.hpp debian/build/pwiz/data/msdata/ChromatogramListBase.hpp debian/build/pwiz/data/msdata/SpectrumListWrapper.hpp debian/build/pwiz/data/msdata/SHA1OutputObserver.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp debian/build/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp debian/build/pwiz/data/vendor_readers/ExtendedReaderList.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp debian/build/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp debian/build/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp debian/build/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp debian/build/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp debian/build/pwiz/data/misc/CalibrationParameters.hpp debian/build/pwiz/data/misc/FrequencyData.hpp debian/build/pwiz/data/misc/FrequencyDataTestData.hpp debian/build/pwiz/data/misc/MinimumPepXML.hpp debian/build/pwiz/data/misc/PeakData.hpp debian/build/pwiz/data/misc/SampleDatum.hpp debian/build/pwiz/data/common/Unimod.hpp debian/build/pwiz/data/common/MemoryIndex.hpp debian/build/pwiz/data/common/obo.hpp debian/build/pwiz/data/common/ParamTypes.hpp debian/build/pwiz/data/common/diff_std.hpp debian/build/pwiz/data/common/Index.hpp debian/build/pwiz/data/common/CVTranslator.hpp debian/build/pwiz/data/common/BinaryIndexStream.hpp debian/build/pwiz/data/common/cv.hpp doc/dox/mainpage.hpp .pc/gcc-boost-fail-cast-tribool-to-bool-force-it.patch/pwiz/data/identdata/TextWriter.hpp docbook-to-man debian/msconvert.sgml > debian/msconvert.1 docbook-to-man debian/idconvert.sgml > debian/idconvert.1 docbook-to-man debian/mscat.sgml > debian/mscat.1 docbook-to-man debian/txt2mzml.sgml > debian/txt2mzml.1 touch build-arch-stamp dh_testdir -a dh_testroot -a dh_link install -m0755 -d debian/libpwiz-dev/usr/lib rm -f debian/libpwiz-dev/usr/lib/libpwiz.so ln -s libpwiz.so.3.0.0 debian/libpwiz-dev/usr/lib/libpwiz.so install -m0755 -d debian/libpwiz3t64/usr/lib rm -f debian/libpwiz3t64/usr/lib/libpwiz.so.3 ln -s libpwiz.so.3.0.0 debian/libpwiz3t64/usr/lib/libpwiz.so.3 dh_installchangelogs -a install -m0755 -d debian/libpwiz-dev/usr/share/doc/libpwiz-dev install -p -m0644 debian/.debhelper/generated/libpwiz-dev/dh_installchangelogs.dch.trimmed debian/libpwiz-dev/usr/share/doc/libpwiz-dev/changelog.Debian install -m0755 -d debian/libpwiz3t64/usr/share/doc/libpwiz3t64 install -p -m0644 debian/.debhelper/generated/libpwiz3t64/dh_installchangelogs.dch.trimmed debian/libpwiz3t64/usr/share/doc/libpwiz3t64/changelog.Debian install -m0755 -d debian/libpwiz-tools/usr/share/doc/libpwiz-tools install -p -m0644 debian/.debhelper/generated/libpwiz-tools/dh_installchangelogs.dch.trimmed debian/libpwiz-tools/usr/share/doc/libpwiz-tools/changelog.Debian dh_installdocs -a install -p -m0644 debian/README.Debian debian/libpwiz-dev/usr/share/doc/libpwiz-dev/README.Debian install -p -m0644 debian/copyright debian/libpwiz-dev/usr/share/doc/libpwiz-dev/copyright install -p -m0644 debian/copyright debian/libpwiz3t64/usr/share/doc/libpwiz3t64/copyright install -p -m0644 debian/copyright debian/libpwiz-tools/usr/share/doc/libpwiz-tools/copyright dh_install -a install -m0755 -d debian/libpwiz-dev/usr/include/ cp --reflink=auto -a ./debian/includes/proteowizard debian/libpwiz-dev/usr/include// install -m0755 -d debian/libpwiz-dev/usr/lib cp --reflink=auto -a ./debian/build/usr/lib/libpwiz.a debian/libpwiz-dev/usr/lib/ install -m0755 -d debian/libpwiz3t64/usr/lib cp --reflink=auto -a ./debian/build/usr/lib/libpwiz.so.3.0.0 debian/libpwiz3t64/usr/lib/ install -m0755 -d debian/libpwiz3t64/usr/share/doc/libpwiz3/example-files cp --reflink=auto -a ./pwiz_tools/examples/hello_analyzer.cpp ./pwiz_tools/examples/hello_analyzer_2.cpp ./pwiz_tools/examples/hello_msdata.cpp ./pwiz_tools/examples/mscat.cpp ./pwiz_tools/examples/txt2mzml.cpp ./pwiz_tools/examples/write_example_files.cpp ./pwiz_tools/examples/write_mzid_example_files.cpp ./pwiz_tools/examples/write_proteome_example_files.cpp ./pwiz_tools/examples/write_traml_example_files.cpp debian/libpwiz3t64/usr/share/doc/libpwiz3/example-files/ install -m0755 -d debian/libpwiz-tools/usr/bin cp --reflink=auto -a ./debian/build/usr/bin/idconvert ./debian/build/usr/bin/mscat ./debian/build/usr/bin/msconvert ./debian/build/usr/bin/txt2mzml debian/libpwiz-tools/usr/bin/ dh_installmenu -a dh_installman -a install -m0755 -d debian/libpwiz3t64/usr/share/man/man3/ install -p -m0644 ./debian/libpwiz.3 debian/libpwiz3t64/usr/share/man/man3/libpwiz.3 install -m0755 -d debian/libpwiz-tools/usr/share/man/man1/ install -p -m0644 ./debian/msconvert.1 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 install -m0755 -d debian/libpwiz-tools/usr/share/man/man1/ install -p -m0644 ./debian/idconvert.1 debian/libpwiz-tools/usr/share/man/man1/idconvert.1 install -m0755 -d debian/libpwiz-tools/usr/share/man/man1/ install -p -m0644 ./debian/mscat.1 debian/libpwiz-tools/usr/share/man/man1/mscat.1 install -m0755 -d debian/libpwiz-tools/usr/share/man/man1/ install -p -m0644 ./debian/txt2mzml.1 debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz3t64/usr/share/man/man3/libpwiz.3 debian/libpwiz-tools/usr/share/man/man1/idconvert.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-tools/usr/share/man/man1/mscat.1 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 mv debian/libpwiz3t64/usr/share/man/man3/libpwiz.3.dh-new debian/libpwiz3t64/usr/share/man/man3/libpwiz.3 mv debian/libpwiz-tools/usr/share/man/man1/idconvert.1.dh-new debian/libpwiz-tools/usr/share/man/man1/idconvert.1 chmod 0644 -- debian/libpwiz3t64/usr/share/man/man3/libpwiz.3 debian/libpwiz-tools/usr/share/man/man1/idconvert.1 mv debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1.dh-new debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 mv debian/libpwiz-tools/usr/share/man/man1/mscat.1.dh-new debian/libpwiz-tools/usr/share/man/man1/mscat.1 mv debian/libpwiz-tools/usr/share/man/man1/msconvert.1.dh-new debian/libpwiz-tools/usr/share/man/man1/msconvert.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/mscat.1 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 dh_strip -a debugedit --build-id --build-id-seed=libpwiz-tools/3.0.18342-4.1 debian/libpwiz-tools/usr/bin/idconvert b5e3c324b048774c40ba4c2407350af233cb620c install -m0755 -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/idconvert debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/b5/e3c324b048774c40ba4c2407350af233cb620c.debug debugedit --build-id --build-id-seed=libpwiz3t64/3.0.18342-4.1 debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libpwiz-dev/usr/lib/libpwiz.a chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/b5/e3c324b048774c40ba4c2407350af233cb620c.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/b5/e3c324b048774c40ba4c2407350af233cb620c.debug strip --remove-section=.comment --remove-section=.note -o /tmp/guwQN0S1NY/strip_PAmqt debian/libpwiz-tools/usr/bin/idconvert chmod --reference debian/libpwiz-tools/usr/bin/idconvert /tmp/guwQN0S1NY/strip_PAmqt cat '/tmp/guwQN0S1NY/strip_PAmqt' > 'debian/libpwiz-tools/usr/bin/idconvert' chmod --reference /tmp/guwQN0S1NY/strip_PAmqt debian/libpwiz-tools/usr/bin/idconvert objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/b5/e3c324b048774c40ba4c2407350af233cb620c.debug debian/libpwiz-tools/usr/bin/idconvert /tmp/guwQN0S1NY/objcopyPxcXDn chmod --reference debian/libpwiz-tools/usr/bin/idconvert /tmp/guwQN0S1NY/objcopyPxcXDn cat '/tmp/guwQN0S1NY/objcopyPxcXDn' > 'debian/libpwiz-tools/usr/bin/idconvert' chmod --reference /tmp/guwQN0S1NY/objcopyPxcXDn debian/libpwiz-tools/usr/bin/idconvert debugedit --build-id --build-id-seed=libpwiz-tools/3.0.18342-4.1 debian/libpwiz-tools/usr/bin/mscat 6e8e8e4272a3fef33d95ae7524f974320b63d660 install -m0755 -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/mscat debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/6e/8e8e4272a3fef33d95ae7524f974320b63d660.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/6e/8e8e4272a3fef33d95ae7524f974320b63d660.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/6e/8e8e4272a3fef33d95ae7524f974320b63d660.debug strip --remove-section=.comment --remove-section=.note -o /tmp/guwQN0S1NY/stripuzXlUp debian/libpwiz-tools/usr/bin/mscat chmod --reference debian/libpwiz-tools/usr/bin/mscat /tmp/guwQN0S1NY/stripuzXlUp cat '/tmp/guwQN0S1NY/stripuzXlUp' > 'debian/libpwiz-tools/usr/bin/mscat' chmod --reference /tmp/guwQN0S1NY/stripuzXlUp debian/libpwiz-tools/usr/bin/mscat objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/6e/8e8e4272a3fef33d95ae7524f974320b63d660.debug debian/libpwiz-tools/usr/bin/mscat /tmp/guwQN0S1NY/objcopyaZ5QBO chmod --reference debian/libpwiz-tools/usr/bin/mscat /tmp/guwQN0S1NY/objcopyaZ5QBO cat '/tmp/guwQN0S1NY/objcopyaZ5QBO' > 'debian/libpwiz-tools/usr/bin/mscat' chmod --reference /tmp/guwQN0S1NY/objcopyaZ5QBO debian/libpwiz-tools/usr/bin/mscat debugedit --build-id --build-id-seed=libpwiz-tools/3.0.18342-4.1 debian/libpwiz-tools/usr/bin/txt2mzml 20e41cdf809119b62c0012ed8ba082633e8f6ea7 install -m0755 -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/20 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/txt2mzml debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/20/e41cdf809119b62c0012ed8ba082633e8f6ea7.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/20/e41cdf809119b62c0012ed8ba082633e8f6ea7.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/20/e41cdf809119b62c0012ed8ba082633e8f6ea7.debug strip --remove-section=.comment --remove-section=.note -o /tmp/guwQN0S1NY/stripJOZV73 debian/libpwiz-tools/usr/bin/txt2mzml chmod --reference debian/libpwiz-tools/usr/bin/txt2mzml /tmp/guwQN0S1NY/stripJOZV73 cat '/tmp/guwQN0S1NY/stripJOZV73' > 'debian/libpwiz-tools/usr/bin/txt2mzml' chmod --reference /tmp/guwQN0S1NY/stripJOZV73 debian/libpwiz-tools/usr/bin/txt2mzml objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/20/e41cdf809119b62c0012ed8ba082633e8f6ea7.debug debian/libpwiz-tools/usr/bin/txt2mzml /tmp/guwQN0S1NY/objcopyTQJ13c chmod --reference debian/libpwiz-tools/usr/bin/txt2mzml /tmp/guwQN0S1NY/objcopyTQJ13c cat '/tmp/guwQN0S1NY/objcopyTQJ13c' > 'debian/libpwiz-tools/usr/bin/txt2mzml' chmod --reference /tmp/guwQN0S1NY/objcopyTQJ13c debian/libpwiz-tools/usr/bin/txt2mzml debugedit --build-id --build-id-seed=libpwiz-tools/3.0.18342-4.1 debian/libpwiz-tools/usr/bin/msconvert 9901916bce1f20ca62944b52e69afc3f51083b09 install -m0755 -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/msconvert debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/99/01916bce1f20ca62944b52e69afc3f51083b09.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/99/01916bce1f20ca62944b52e69afc3f51083b09.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/99/01916bce1f20ca62944b52e69afc3f51083b09.debug strip --remove-section=.comment --remove-section=.note -o /tmp/guwQN0S1NY/stripmvUKdy debian/libpwiz-tools/usr/bin/msconvert chmod --reference debian/libpwiz-tools/usr/bin/msconvert /tmp/guwQN0S1NY/stripmvUKdy cat '/tmp/guwQN0S1NY/stripmvUKdy' > 'debian/libpwiz-tools/usr/bin/msconvert' chmod --reference /tmp/guwQN0S1NY/stripmvUKdy debian/libpwiz-tools/usr/bin/msconvert objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/99/01916bce1f20ca62944b52e69afc3f51083b09.debug debian/libpwiz-tools/usr/bin/msconvert /tmp/guwQN0S1NY/objcopy5D7y3a chmod --reference debian/libpwiz-tools/usr/bin/msconvert /tmp/guwQN0S1NY/objcopy5D7y3a cat '/tmp/guwQN0S1NY/objcopy5D7y3a' > 'debian/libpwiz-tools/usr/bin/msconvert' chmod --reference /tmp/guwQN0S1NY/objcopy5D7y3a debian/libpwiz-tools/usr/bin/msconvert install -m0755 -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/share/doc ln -s libpwiz-tools debian/.debhelper/libpwiz-tools/dbgsym-root/usr/share/doc/libpwiz-tools-dbgsym install -m0755 -d debian/.debhelper/libpwiz-tools readelf -W --section-headers debian/libpwiz-dev/usr/lib/libpwiz.a | sed -n '/^ *\[[ 0-9]*]/s/ *\[[ 0-9]*\] *//p' | awk 'BEGIN {rv=1} /^NULL/ {next} $1 ~ /^.(text|data|(preinit|init|fini)_array$)/ {if ($5 !~ /^0+$/) rv=0} END { exit rv}' 9a9c812737cddebd89f054308580e0e93ee01f6e install -m0755 -d debian/.debhelper/libpwiz3t64/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 debian/.debhelper/libpwiz3t64/dbgsym-root/usr/lib/debug/.build-id/9a/9c812737cddebd89f054308580e0e93ee01f6e.debug chmod 0644 -- debian/.debhelper/libpwiz3t64/dbgsym-root/usr/lib/debug/.build-id/9a/9c812737cddebd89f054308580e0e93ee01f6e.debug chown 0:0 -- debian/.debhelper/libpwiz3t64/dbgsym-root/usr/lib/debug/.build-id/9a/9c812737cddebd89f054308580e0e93ee01f6e.debug strip --remove-section=.comment --remove-section=.note -o /tmp/aKox3Ruylw/stripSWsB26 debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 chmod --reference debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 /tmp/aKox3Ruylw/stripSWsB26 cat '/tmp/aKox3Ruylw/stripSWsB26' > 'debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0' chmod --reference /tmp/aKox3Ruylw/stripSWsB26 debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libpwiz3t64/dbgsym-root/usr/lib/debug/.build-id/9a/9c812737cddebd89f054308580e0e93ee01f6e.debug debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 /tmp/aKox3Ruylw/objcopyZ2FPZH chmod --reference debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 /tmp/aKox3Ruylw/objcopyZ2FPZH cat '/tmp/aKox3Ruylw/objcopyZ2FPZH' > 'debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0' chmod --reference /tmp/aKox3Ruylw/objcopyZ2FPZH debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 install -m0755 -d debian/.debhelper/libpwiz3t64/dbgsym-root/usr/share/doc ln -s libpwiz3t64 debian/.debhelper/libpwiz3t64/dbgsym-root/usr/share/doc/libpwiz3t64-dbgsym install -m0755 -d debian/.debhelper/libpwiz3t64 dh_compress -av -Xexample-files cd debian/libpwiz-dev cd debian/libpwiz3t64 cd debian/libpwiz-tools chmod a-x usr/share/doc/libpwiz-dev/changelog.Debian chmod a-x usr/share/doc/libpwiz-tools/changelog.Debian usr/share/man/man1/idconvert.1 usr/share/man/man1/mscat.1 usr/share/man/man1/msconvert.1 usr/share/man/man1/txt2mzml.1 gzip -9nf usr/share/doc/libpwiz-dev/changelog.Debian gzip -9nf usr/share/doc/libpwiz-tools/changelog.Debian usr/share/man/man1/idconvert.1 usr/share/man/man1/mscat.1 usr/share/man/man1/msconvert.1 usr/share/man/man1/txt2mzml.1 cd '/<>' chmod a-x usr/share/doc/libpwiz3t64/changelog.Debian usr/share/man/man3/libpwiz.3 cd '/<>' gzip -9nf usr/share/doc/libpwiz3t64/changelog.Debian usr/share/man/man3/libpwiz.3 cd '/<>' dh_makeshlibs -a rm -f debian/libpwiz-dev/DEBIAN/shlibs rm -f debian/libpwiz3t64/DEBIAN/shlibs install -m0755 -d debian/libpwiz3t64/DEBIAN echo "libpwiz 3 libpwiz3t64 (>= 3.0.18342)" >> debian/libpwiz3t64/DEBIAN/shlibs chmod 0644 -- debian/libpwiz3t64/DEBIAN/shlibs chown 0:0 -- debian/libpwiz3t64/DEBIAN/shlibs mv debian/.debhelper/generated/libpwiz3t64/triggers.new debian/.debhelper/generated/libpwiz3t64/triggers mv debian/libpwiz3t64.substvars.new debian/libpwiz3t64.substvars rm -f debian/libpwiz-tools/DEBIAN/shlibs dh_installdeb -a install -m0755 -d debian/libpwiz-dev/DEBIAN install -m0755 -d debian/libpwiz3t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libpwiz3t64/triggers debian/libpwiz3t64/DEBIAN/triggers install -m0755 -d debian/libpwiz-tools/DEBIAN dpkg-gensymbols -P/<>/debian -plibpwiz3t64 \ -v3.0.0 -c2 -d \ -e/<>/debian/build/usr/lib/libpwiz.so.3.0.0 \ -O/<>/debian/libpwiz3t64/DEBIAN/symbols dpkg-gensymbols: debug: Scanning /<>/debian/build/usr/lib/libpwiz.so.3.0.0 for symbol information dpkg-gensymbols: warning: new libraries appeared in the symbols file: libpwiz.so.3 dpkg-gensymbols: warning: no debian/symbols file used as basis for generating /<>/debian/libpwiz3t64/DEBIAN/symbols dpkg-gensymbols: debug: Merging symbols from /<>/debian/build/usr/lib/libpwiz.so.3.0.0 as libpwiz.so.3 dpkg-gensymbols: debug: Storing symbols in /<>/debian/libpwiz3t64/DEBIAN/symbols. --- new_symbol_file (libpwiz3t64_3.0.0_s390x) +++ dpkg-gensymbolskwDXDZ 2024-02-29 13:49:41.460470458 +0000 @@ -0,0 +1,5089 @@ +libpwiz.so.3 libpwiz3t64 #MINVER# + PERSON_DOC_OWNER@Base 3.0.0 + _Z10getKLscore12isotopeChainRKSt6vectorIdSaIdEES4_@Base 3.0.0 + _Z11pairCompare8pairDatad@Base 3.0.0 + _Z12pairSortFunc8pairDataS_@Base 3.0.0 + _Z12setLogStreamRSo@Base 3.0.0 + _Z12sortFinalCol9ridgeLineS_@Base 3.0.0 + _Z14convertColToMZRKSt6vectorIdSaIdEEi@Base 3.0.0 + _Z14getColLowBoundRKSt6vectorIdSaIdEEd@Base 3.0.0 + _Z14sortScoresByMZ10scoreChainS_@Base 3.0.0 + _Z15getColHighBoundRKSt6vectorIdSaIdEEd@Base 3.0.0 + 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_ZTSN4pwiz6msdata6detail23ChromatogramList_WatersE@Base 3.0.0 + _ZTSN4pwiz6msdata6detail24ChromatogramList_AgilentE@Base 3.0.0 + _ZTSN4pwiz6msdata6detail25ChromatogramList_ShimadzuE@Base 3.0.0 + _ZTSN4pwiz6msdata8SoftwareE@Base 3.0.0 + _ZTSN4pwiz7tradata10InstrumentE@Base 3.0.0 + _ZTSN4pwiz7tradata10ReaderFailE@Base 3.0.0 + _ZTSN4pwiz7tradata10ReaderListE@Base 3.0.0 + _ZTSN4pwiz7tradata11TraDataFileE@Base 3.0.0 + _ZTSN4pwiz7tradata17DefaultReaderListE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO13HandlerTargetE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO14HandlerCVParamE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO14HandlerPeptideE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO14HandlerProteinE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO14HandlerTraDataE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO15HandlerCompoundE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO15HandlerSoftwareE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO16HandlerUserParamE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO17HandlerInstrumentE@Base 3.0.0 + _ZTSN4pwiz7tradata2IO17HandlerPredictionE@Base 3.0.0 + 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3.0.0 + _ZTSN4pwiz8analysis12PeakDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis12PeakelGrowerE@Base 3.0.0 + _ZTSN4pwiz8analysis12PeakelPickerE@Base 3.0.0 + _ZTSN4pwiz8analysis13MS2DeisotoperE@Base 3.0.0 + _ZTSN4pwiz8analysis13SpectrumTableE@Base 3.0.0 + _ZTSN4pwiz8analysis14FeatureModelerE@Base 3.0.0 + _ZTSN4pwiz8analysis14IDemultiplexerE@Base 3.0.0 + _ZTSN4pwiz8analysis14MS2NoiseFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis14MSDataAnalyzerE@Base 3.0.0 + _ZTSN4pwiz8analysis14PeakFinder_SNRE@Base 3.0.0 + _ZTSN4pwiz8analysis14RegionAnalyzerE@Base 3.0.0 + _ZTSN4pwiz8analysis15CwtPeakDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis15FeatureDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis15NoiseCalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis15SpectrumList_3DE@Base 3.0.0 + _ZTSN4pwiz8analysis15ThresholdFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis16AdjustByScanTimeE@Base 3.0.0 + _ZTSN4pwiz8analysis16AdjustmentObjectE@Base 3.0.0 + _ZTSN4pwiz8analysis16MSXDemultiplexerE@Base 3.0.0 + 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_ZTSN4pwiz8analysis22PeakelGrower_ProximityE@Base 3.0.0 + _ZTSN4pwiz8analysis22SpectrumList_MZRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramListWrapperE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramList_Filter9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramList_FilterE@Base 3.0.0 + _ZTSN4pwiz8analysis23FeatureModeler_GaussianE@Base 3.0.0 + _ZTSN4pwiz8analysis23MSDataAnalyzerContainerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_PeakFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_PeakPickerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_ScanSummerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_TitleMakerE@Base 3.0.0 + _ZTSN4pwiz8analysis24LocalMaximumPeakDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis24SpectrumList_IonMobilityE@Base 3.0.0 + _ZTSN4pwiz8analysis26ProteinList_DecoyGenerator9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis26ProteinList_DecoyGeneratorE@Base 3.0.0 + _ZTSN4pwiz8analysis26SpectrumList_MetadataFixerE@Base 3.0.0 + 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_ZTSN4pwiz8analysis37SpectrumList_FilterPredicate_PolarityE@Base 3.0.0 + _ZTSN4pwiz8analysis38ChromatogramList_SavitzkyGolaySmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis38SpectrumList_FilterPredicate_MzPresentE@Base 3.0.0 + _ZTSN4pwiz8analysis39SpectrumList_FilterPredicate_MSLevelSetE@Base 3.0.0 + _ZTSN4pwiz8analysis41ChromatogramList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis41SpectrumList_FilterPredicate_AnalyzerTypeE@Base 3.0.0 + _ZTSN4pwiz8analysis41SpectrumList_FilterPredicate_ScanEventSetE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_FilterPredicate_ScanNumberSetE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_FilterPredicate_ScanTimeRangeE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_SorterPredicate_ScanStartTimeE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_ActivationTypeE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_ChargeStateSetE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_PrecursorMzSetE@Base 3.0.0 + _ZTSN4pwiz8analysis44ProteinList_DecoyGeneratorPredicate_ReversedE@Base 3.0.0 + _ZTSN4pwiz8analysis44ProteinList_DecoyGeneratorPredicate_ShuffledE@Base 3.0.0 + _ZTSN4pwiz8analysis45SpectrumList_FilterPredicate_ThermoScanFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis50SpectrumList_FilterPredicate_DefaultArrayLengthSetE@Base 3.0.0 + _ZTSN4pwiz8analysis8SmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis9RegionSICE@Base 3.0.0 + _ZTSN4pwiz8analysis9RegionTICE@Base 3.0.0 + _ZTSN4pwiz8minimxml17basic_charcounterIcEE@Base 3.0.0 + _ZTSN4pwiz8minimxml9SAXParser7HandlerE@Base 3.0.0 + _ZTSN4pwiz8minimxml9SAXParser9saxstringE@Base 3.0.0 + _ZTSN4pwiz8minimxml9XMLWriter14OutputObserverE@Base 3.0.0 + _ZTSN4pwiz8minimxml9XMLWriterE@Base 3.0.0 + _ZTSN4pwiz8proteome10ReaderFailE@Base 3.0.0 + _ZTSN4pwiz8proteome10ReaderListE@Base 3.0.0 + _ZTSN4pwiz8proteome11ProteinListE@Base 3.0.0 + _ZTSN4pwiz8proteome12ProteomeDataE@Base 3.0.0 + _ZTSN4pwiz8proteome12Reader_FASTAE@Base 3.0.0 + _ZTSN4pwiz8proteome15DigestedPeptideE@Base 3.0.0 + _ZTSN4pwiz8proteome15ModificationMapE@Base 3.0.0 + _ZTSN4pwiz8proteome16ProteinListCacheE@Base 3.0.0 + _ZTSN4pwiz8proteome16ProteomeDataFileE@Base 3.0.0 + _ZTSN4pwiz8proteome17DefaultReaderListE@Base 3.0.0 + _ZTSN4pwiz8proteome17ProteinListSimpleE@Base 3.0.0 + _ZTSN4pwiz8proteome18ProteinListWrapperE@Base 3.0.0 + _ZTSN4pwiz8proteome6ReaderE@Base 3.0.0 + _ZTSN4pwiz8proteome7PeptideE@Base 3.0.0 + _ZTSN4pwiz8proteome7ProteinE@Base 3.0.0 + _ZTSN4pwiz9chemistry11MZToleranceE@Base 3.0.0 + _ZTSN4pwiz9frequency12PeakDetectorE@Base 3.0.0 + _ZTSN4pwiz9frequency17PeakDetectorNaiveE@Base 3.0.0 + _ZTSN4pwiz9frequency18FrequencyEstimatorE@Base 3.0.0 + _ZTSN4pwiz9frequency18ParameterEstimatorE@Base 3.0.0 + _ZTSN4pwiz9frequency19TruncatedLorentzianE@Base 3.0.0 + _ZTSN4pwiz9frequency20ParametrizedFunctionISt7complexIdEEE@Base 3.0.0 + _ZTSN4pwiz9frequency21PeakDetectorNaiveImplE@Base 3.0.0 + _ZTSN4pwiz9frequency22ParameterEstimatorImplE@Base 3.0.0 + 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_ZTSN4pwiz9identdata14SearchDatabaseE@Base 3.0.0 + _ZTSN4pwiz9identdata15PeptideEvidenceE@Base 3.0.0 + _ZTSN4pwiz9identdata16AnalysisSoftwareE@Base 3.0.0 + _ZTSN4pwiz9identdata16ProteinDetectionE@Base 3.0.0 + _ZTSN4pwiz9identdata16StringMatchCVMapE@Base 3.0.0 + _ZTSN4pwiz9identdata16TranslationTableE@Base 3.0.0 + _ZTSN4pwiz9identdata17DefaultReaderListE@Base 3.0.0 + _ZTSN4pwiz9identdata20ProteinDetectionListE@Base 3.0.0 + _ZTSN4pwiz9identdata21ProteinAmbiguityGroupE@Base 3.0.0 + _ZTSN4pwiz9identdata22BibliographicReferenceE@Base 3.0.0 + _ZTSN4pwiz9identdata22SpectrumIdentificationE@Base 3.0.0 + _ZTSN4pwiz9identdata24ProteinDetectionProtocolE@Base 3.0.0 + _ZTSN4pwiz9identdata26IdentifiableParamContainerE@Base 3.0.0 + _ZTSN4pwiz9identdata26ProteinDetectionHypothesisE@Base 3.0.0 + _ZTSN4pwiz9identdata26SpectrumIdentificationItemE@Base 3.0.0 + _ZTSN4pwiz9identdata26SpectrumIdentificationListE@Base 3.0.0 + _ZTSN4pwiz9identdata28SpectrumIdentificationResultE@Base 3.0.0 + 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_ZZN5boost9function2INS_14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEESB_SB_E9assign_toINS_9algorithm6detail13token_finderFINSG_10is_any_ofFIcEEEEEEvT_E13stored_vtable@Base 3.0.0 + _ZZN5boost9function2INS_14iterator_rangeIPKcEES3_S3_E9assign_toINS_9algorithm6detail13token_finderFINS8_10is_any_ofFIcEEEEEEvT_E13stored_vtable@Base 3.0.0 + _ZZN5boost9singletonI7ETD_SVMLi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9singletonIN4pwiz4data6unimod10UnimodDataELi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9singletonIN4pwiz8proteome13Fragmentation4Impl10StaticDataELi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9singletonIN4pwiz8proteome9AminoAcid4Info10RecordDataELi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9singletonIN4pwiz9chemistry7Element10RecordDataELi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE11invalid_ptrB5cxx11@Base 3.0.0 + _ZZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE11invalid_xprB5cxx11@Base 3.0.0 + _ZZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE17invalid_matchableB5cxx11@Base 3.0.0 + _ZZNK5boost9xpressive6detail16sub_match_vectorIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEixEmE6s_null@Base 3.0.0 + _log@Base 3.0.0 + libsvm_version@Base 3.0.0 + os_@Base 3.0.0 + peakFamilyDetectorFTTestDataSize_@Base 3.0.0 + peakFamilyDetectorFTTestData_@Base 3.0.0 + sampleData_@Base 3.0.0 + sampleFrequencyData_@Base 3.0.0 + sampleMassDataSize_@Base 3.0.0 + sampleMassData_@Base 3.0.0 + svm_check_parameter@Base 3.0.0 + svm_check_probability_model@Base 3.0.0 + svm_cross_validation@Base 3.0.0 + svm_destroy_model@Base 3.0.0 + svm_destroy_param@Base 3.0.0 + svm_free_and_destroy_model@Base 3.0.0 + svm_free_model_content@Base 3.0.0 + svm_get_labels@Base 3.0.0 + svm_get_nr_class@Base 3.0.0 + svm_get_svm_type@Base 3.0.0 + svm_get_svr_probability@Base 3.0.0 + svm_load_model@Base 3.0.0 + svm_predict@Base 3.0.0 + svm_predict_probability@Base 3.0.0 + svm_predict_values@Base 3.0.0 + svm_save_model@Base 3.0.0 + svm_set_print_string_function@Base 3.0.0 + svm_train@Base 3.0.0 + testDataSize_@Base 3.0.0 + testData_@Base 3.0.0 echo "libpwiz 3 libpwiz3t64 (>= 3.0.9393-1)" > \ /<>/debian/libpwiz3t64/DEBIAN/shlibs dh_fixperms -a find debian/libpwiz-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz3t64 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-tools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz3t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3t64/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libpwiz3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libpwiz-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_lintian -a install -m0755 -d debian/libpwiz3t64/usr/share/lintian/overrides install -p -m0644 debian/libpwiz3t64.lintian-overrides debian/libpwiz3t64/usr/share/lintian/overrides/libpwiz3t64 dh_shlibdeps -a install -m0755 -d debian/libpwiz3t64/DEBIAN dpkg-shlibdeps -Tdebian/libpwiz3t64.substvars debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 install -m0755 -d debian/libpwiz-tools/DEBIAN dpkg-shlibdeps -Tdebian/libpwiz-tools.substvars debian/libpwiz-tools/usr/bin/idconvert debian/libpwiz-tools/usr/bin/mscat debian/libpwiz-tools/usr/bin/txt2mzml debian/libpwiz-tools/usr/bin/msconvert dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: symbol inflateReset used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol uncompress used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol compress used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateCopy used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol compressBound used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol crc32 used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libpwiz3t64/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dh_gencontrol -a install -m0755 -d debian/libpwiz-tools/DEBIAN echo misc:Depends= >> debian/libpwiz-tools.substvars echo misc:Pre-Depends= >> debian/libpwiz-tools.substvars install -m0755 -d debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN dpkg-gencontrol -plibpwiz-tools -ldebian/changelog -Tdebian/libpwiz-tools.substvars -Pdebian/.debhelper/libpwiz-tools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libpwiz-tools-dbgsym "-DDepends=libpwiz-tools (= \${binary:Version})" "-DDescription=debug symbols for libpwiz-tools" "-DBuild-Ids=20e41cdf809119b62c0012ed8ba082633e8f6ea7 6e8e8e4272a3fef33d95ae7524f974320b63d660 9901916bce1f20ca62944b52e69afc3f51083b09 b5e3c324b048774c40ba4c2407350af233cb620c" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libpwiz-dev/DEBIAN echo misc:Depends= >> debian/libpwiz-dev.substvars echo misc:Pre-Depends= >> debian/libpwiz-dev.substvars dpkg-gencontrol -plibpwiz-dev -ldebian/changelog -Tdebian/libpwiz-dev.substvars -Pdebian/libpwiz-dev install -m0755 -d debian/libpwiz3t64/DEBIAN echo misc:Depends= >> debian/libpwiz3t64.substvars echo misc:Pre-Depends= >> debian/libpwiz3t64.substvars install -m0755 -d debian/.debhelper/libpwiz3t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibpwiz3t64 -ldebian/changelog -Tdebian/libpwiz3t64.substvars -Pdebian/.debhelper/libpwiz3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libpwiz3t64-dbgsym "-DDepends=libpwiz3t64 (= \${binary:Version})" "-DDescription=debug symbols for libpwiz3t64" -DBuild-Ids=9a9c812737cddebd89f054308580e0e93ee01f6e -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libpwiz-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/.debhelper/libpwiz3t64/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libpwiz3t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibpwiz3t64 -ldebian/changelog -Tdebian/libpwiz3t64.substvars -Pdebian/libpwiz3t64 chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibpwiz-tools -ldebian/changelog -Tdebian/libpwiz-tools.substvars -Pdebian/libpwiz-tools chmod 0644 -- debian/libpwiz-dev/DEBIAN/control chown 0:0 -- debian/libpwiz-dev/DEBIAN/control chmod 0644 -- debian/libpwiz-tools/DEBIAN/control chown 0:0 -- debian/libpwiz-tools/DEBIAN/control chmod 0644 -- debian/libpwiz3t64/DEBIAN/control chown 0:0 -- debian/libpwiz3t64/DEBIAN/control dh_md5sums -a install -m0755 -d debian/libpwiz3t64/DEBIAN cd debian/libpwiz3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libpwiz-dev/DEBIAN install -m0755 -d debian/libpwiz-tools/DEBIAN cd debian/libpwiz-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libpwiz-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libpwiz-tools/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-tools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN chmod 0644 -- debian/libpwiz3t64/DEBIAN/md5sums chown 0:0 -- debian/libpwiz3t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libpwiz3t64/dbgsym-root/DEBIAN cd debian/.debhelper/libpwiz3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/libpwiz-tools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libpwiz-dev/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libpwiz3t64/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libpwiz3t64/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/libpwiz-dev .. dpkg-deb --root-owner-group --build debian/.debhelper/libpwiz3t64/dbgsym-root debian/.debhelper/scratch-space/build-libpwiz3t64 dpkg-deb --root-owner-group --build debian/.debhelper/libpwiz-tools/dbgsym-root debian/.debhelper/scratch-space/build-libpwiz-tools INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libpwiz-tools-dbgsym (in debian/.debhelper/libpwiz-tools/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libpwiz3t64-dbgsym (in debian/.debhelper/libpwiz3t64/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libpwiz-dev (in debian/libpwiz-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz-dev/DEBIAN/control, package libpwiz-dev, directory debian/libpwiz-dev Searching for duplicated docs in dependency libpwiz3t64... symlinking changelog.Debian.gz in libpwiz-dev to file in libpwiz3t64 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz-dev ... pkgstripfiles: No PNG files. pkgstripfiles: processing control file: debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/control, package libpwiz-tools-dbgsym, directory debian/.debhelper/libpwiz-tools/dbgsym-root dpkg-deb: building package 'libpwiz-dev' in '../libpwiz-dev_3.0.18342-4.1_s390x.deb'. dpkg-deb: building package 'libpwiz-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-libpwiz-tools/libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.deb'. Renaming libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.deb to libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.ddeb mv debian/.debhelper/scratch-space/build-libpwiz-tools/libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.deb ../libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libpwiz3t64/dbgsym-root/DEBIAN/control, package libpwiz3t64-dbgsym, directory debian/.debhelper/libpwiz3t64/dbgsym-root dpkg-deb: building package 'libpwiz3t64-dbgsym' in 'debian/.debhelper/scratch-space/build-libpwiz3t64/libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.deb'. Renaming libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.deb to libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.ddeb mv debian/.debhelper/scratch-space/build-libpwiz3t64/libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.deb ../libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.ddeb dpkg-deb --build debian/libpwiz-tools .. INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libpwiz-tools (in debian/libpwiz-tools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz-tools/DEBIAN/control, package libpwiz-tools, directory debian/libpwiz-tools INFO: pkgstripfiles: waiting for lock (libpwiz-tools) ... dpkg-deb --build debian/libpwiz3t64 .. INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libpwiz3t64 (in debian/libpwiz3t64); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libpwiz-tools) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpwiz3t64/DEBIAN/control, package libpwiz3t64, directory debian/libpwiz3t64 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz3t64 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpwiz3t64' in '../libpwiz3t64_3.0.18342-4.1_s390x.deb'. Searching for duplicated docs in dependency libpwiz3t64... symlinking changelog.Debian.gz in libpwiz-tools to file in libpwiz3t64 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpwiz-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpwiz-tools' in '../libpwiz-tools_3.0.18342-4.1_s390x.deb'. dpkg-genbuildinfo --build=any -O../libpwiz_3.0.18342-4.1_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libpwiz_3.0.18342-4.1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-02-29T13:50:54Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libpwiz_3.0.18342-4.1_s390x.changes: ------------------------------------ Format: 1.8 Date: Wed, 28 Feb 2024 16:35:13 +0000 Source: libpwiz Binary: libpwiz-dev libpwiz-tools libpwiz3t64 Built-For-Profiles: noudeb Architecture: s390x Version: 3.0.18342-4.1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Benjamin Drung Description: libpwiz-dev - library to perform proteomics data analyses (devel files) libpwiz-tools - ProteoWizard command line tools libpwiz3t64 - library to perform proteomics data analyses (runtime) Closes: 1062580 Changes: libpwiz (3.0.18342-4.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062580 Checksums-Sha1: 64fc7c10c3e719f3871db10c5ca53d7b4d19e48d 5440188 libpwiz-dev_3.0.18342-4.1_s390x.deb 2c8381dc06ae3a0ee409d70f106d7d60858f58e5 1809108 libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.ddeb 8576ac09da7740201e5844c743ed138acc218d22 112836 libpwiz-tools_3.0.18342-4.1_s390x.deb e6e797c0b3082786356ee371b370260a855debf2 45536270 libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.ddeb 2610cf700b7e6ce0200c79969036bb390f6cc3bf 2908154 libpwiz3t64_3.0.18342-4.1_s390x.deb a0259da3968807178d620159f6cd209febac0a21 10997 libpwiz_3.0.18342-4.1_s390x.buildinfo Checksums-Sha256: b3cd07d4498cf61627fc6f0762e771213b17a82e834a9ef99948586292e3fdf1 5440188 libpwiz-dev_3.0.18342-4.1_s390x.deb d6cd6370076b14139408d4f5400bc7b4b7709fdaedc915b23994dd3826c25d3f 1809108 libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.ddeb 9e7b27693ad369810d321d7517870ee2bb3f68c246a1c4f6442252d1ee9142d1 112836 libpwiz-tools_3.0.18342-4.1_s390x.deb c6db9eb00aa124172bdf42326490176ee58f77f6300561833215f2ec455f60e6 45536270 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+------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libpwiz Binary: libpwiz-dev libpwiz-tools libpwiz-tools-dbgsym libpwiz3t64 libpwiz3t64-dbgsym Architecture: s390x Version: 3.0.18342-4.1 Checksums-Md5: 234bcb09445bc29774e908d0e0ce4f73 5440188 libpwiz-dev_3.0.18342-4.1_s390x.deb 74e7c32ff6d661860f297d6b377ce044 1809108 libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.ddeb cb739ca47ca94fa106b919e96f5d9801 112836 libpwiz-tools_3.0.18342-4.1_s390x.deb c4277ece3e40a7eaae4a96fd21539ed0 45536270 libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.ddeb 51cacadd7e5138866b2e42ee0908fd89 2908154 libpwiz3t64_3.0.18342-4.1_s390x.deb Checksums-Sha1: 64fc7c10c3e719f3871db10c5ca53d7b4d19e48d 5440188 libpwiz-dev_3.0.18342-4.1_s390x.deb 2c8381dc06ae3a0ee409d70f106d7d60858f58e5 1809108 libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.ddeb 8576ac09da7740201e5844c743ed138acc218d22 112836 libpwiz-tools_3.0.18342-4.1_s390x.deb e6e797c0b3082786356ee371b370260a855debf2 45536270 libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.ddeb 2610cf700b7e6ce0200c79969036bb390f6cc3bf 2908154 libpwiz3t64_3.0.18342-4.1_s390x.deb Checksums-Sha256: b3cd07d4498cf61627fc6f0762e771213b17a82e834a9ef99948586292e3fdf1 5440188 libpwiz-dev_3.0.18342-4.1_s390x.deb d6cd6370076b14139408d4f5400bc7b4b7709fdaedc915b23994dd3826c25d3f 1809108 libpwiz-tools-dbgsym_3.0.18342-4.1_s390x.ddeb 9e7b27693ad369810d321d7517870ee2bb3f68c246a1c4f6442252d1ee9142d1 112836 libpwiz-tools_3.0.18342-4.1_s390x.deb c6db9eb00aa124172bdf42326490176ee58f77f6300561833215f2ec455f60e6 45536270 libpwiz3t64-dbgsym_3.0.18342-4.1_s390x.ddeb e6481a106a4c5fa073b024263ea97dac0aea973ea9eef4bf5000a59c5328f9ae 2908154 libpwiz3t64_3.0.18342-4.1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Thu, 29 Feb 2024 13:50:51 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu7), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu2), binutils (= 2.42-3ubuntu1), binutils-common (= 2.42-3ubuntu1), binutils-s390x-linux-gnu (= 2.42-3ubuntu1), bsdextrautils (= 2.39.3-6ubuntu2), bsdutils (= 1:2.39.3-6ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5ubuntu1), chrpath (= 0.16-2build1), coreutils (= 9.4-3ubuntu2), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-16ubuntu1), cpp-13-s390x-linux-gnu (= 13.2.0-16ubuntu1), cpp-s390x-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu4), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu1), debianutils (= 5.16), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), docbook (= 4.5-10), docbook-to-man (= 1:2.0.0-45), doxygen (= 1.9.8+ds-2build1), dpkg (= 1.22.5ubuntu2), dpkg-dev (= 1.22.5ubuntu2), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig-config (= 2.15.0-1ubuntu1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-16ubuntu1), g++-13-s390x-linux-gnu (= 13.2.0-16ubuntu1), g++-s390x-linux-gnu (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-16ubuntu1), gcc-13-base (= 13.2.0-16ubuntu1), gcc-13-s390x-linux-gnu (= 13.2.0-16ubuntu1), gcc-14-base (= 14-20240221-2.1ubuntu1), gcc-s390x-linux-gnu (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu2), hostname (= 3.23+nmu2ubuntu1), icu-devtools (= 74.2-1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240221-2.1ubuntu1), libatomic1 (= 14-20240221-2.1ubuntu1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-3ubuntu1), libblkid1 (= 2.39.3-6ubuntu2), libboost-atomic1.83-dev (= 1.83.0-2ubuntu1), libboost-atomic1.83.0 (= 1.83.0-2ubuntu1), libboost-chrono-dev (= 1.83.0.1ubuntu2), libboost-chrono1.83-dev (= 1.83.0-2ubuntu1), libboost-chrono1.83.0 (= 1.83.0-2ubuntu1), libboost-date-time-dev (= 1.83.0.1ubuntu2), libboost-date-time1.83-dev (= 1.83.0-2ubuntu1), libboost-date-time1.83.0 (= 1.83.0-2ubuntu1), libboost-dev (= 1.83.0.1ubuntu2), libboost-filesystem-dev (= 1.83.0.1ubuntu2), libboost-filesystem1.83-dev (= 1.83.0-2ubuntu1), libboost-filesystem1.83.0 (= 1.83.0-2ubuntu1), libboost-iostreams-dev (= 1.83.0.1ubuntu2), libboost-iostreams1.83-dev (= 1.83.0-2ubuntu1), libboost-iostreams1.83.0 (= 1.83.0-2ubuntu1), libboost-program-options-dev (= 1.83.0.1ubuntu2), libboost-program-options1.83-dev (= 1.83.0-2ubuntu1), libboost-program-options1.83.0 (= 1.83.0-2ubuntu1), libboost-regex-dev (= 1.83.0.1ubuntu2), libboost-regex1.83-dev (= 1.83.0-2ubuntu1), libboost-regex1.83.0 (= 1.83.0-2ubuntu1), libboost-serialization1.83-dev (= 1.83.0-2ubuntu1), libboost-serialization1.83.0 (= 1.83.0-2ubuntu1), libboost-system-dev (= 1.83.0.1ubuntu2), libboost-system1.83-dev (= 1.83.0-2ubuntu1), libboost-system1.83.0 (= 1.83.0-2ubuntu1), libboost-thread-dev (= 1.83.0.1ubuntu2), libboost-thread1.83-dev (= 1.83.0-2ubuntu1), libboost-thread1.83.0 (= 1.83.0-2ubuntu1), libboost-tools-dev (= 1.83.0.1ubuntu2), libboost1.83-dev (= 1.83.0-2ubuntu1), libboost1.83-tools-dev (= 1.83.0-2ubuntu1), libbrotli-dev (= 1.1.0-2), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.12.1-1), libbz2-1.0 (= 1.0.8-5ubuntu1), libbz2-dev (= 1.0.8-5ubuntu1), libc-bin (= 2.39-0ubuntu2), libc-dev-bin (= 2.39-0ubuntu2), libc6 (= 2.39-0ubuntu2), libc6-dev (= 2.39-0ubuntu2), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5ubuntu1), libcc1-0 (= 14-20240221-2.1ubuntu1), libclang-cpp18 (= 1:18.1.0~rc2-4), libclang1-18 (= 1:18.1.0~rc2-4), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-3ubuntu1), libctf0 (= 2.42-3ubuntu1), libdb5.3t64 (= 5.3.28+dfsg2-5), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.14.1ubuntu1), libdeflate-dev (= 1.19-1), libdeflate0 (= 1.19-1), libdpkg-perl (= 1.22.5ubuntu2), libdw1 (= 0.190-1), libedit2 (= 3.1-20230828-1), libeigen3-dev (= 3.4.0-4), libelf1 (= 0.190-1), libexpat1 (= 2.6.0-1), libexpat1-dev (= 2.6.0-1), libffi8 (= 3.4.6-1), libfftw3-bin (= 3.3.10-1ubuntu1), libfftw3-dev (= 3.3.10-1ubuntu1), libfftw3-double3 (= 3.3.10-1ubuntu1), libfftw3-long3 (= 3.3.10-1ubuntu1), libfftw3-single3 (= 3.3.10-1ubuntu1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfmt9 (= 9.1.0+ds1-2), libfontconfig-dev (= 2.15.0-1ubuntu1), libfontconfig1 (= 2.15.0-1ubuntu1), libfreetype-dev (= 2.13.2+dfsg-1build1), libfreetype6 (= 2.13.2+dfsg-1build1), libgcc-13-dev (= 13.2.0-16ubuntu1), libgcc-s1 (= 14-20240221-2.1ubuntu1), libgcrypt20 (= 1.10.3-2), libgd-dev (= 2.3.3-9ubuntu2), libgd3 (= 2.3.3-9ubuntu2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 14-20240221-2.1ubuntu1), libgpg-error0 (= 1.47-3build1), libgssapi-krb5-2 (= 1.20.1-5build1), libicu-dev (= 74.2-1ubuntu1), libicu74 (= 74.2-1ubuntu1), libisl23 (= 0.26-3), libitm1 (= 14-20240221-2.1ubuntu1), libjansson4 (= 2.14-2), libjbig-dev (= 2.1-6.1ubuntu1), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg-turbo8-dev (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), libllvm18 (= 1:18.1.0~rc2-4), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.6.0-0.2), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-6ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libosp5 (= 1.5.2-13ubuntu3), libpam-modules (= 1.5.3-4ubuntu1), libpam-modules-bin (= 1.5.3-4ubuntu1), libpam-runtime (= 1.5.3-4ubuntu1), libpam0t64 (= 1.5.3-4ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38 (= 5.38.2-3ubuntu1), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-2), libpng-dev (= 1.6.43-2), libpng16-16t64 (= 1.6.43-2), libpthread-stubs0-dev (= 0.4-1build2), libseccomp2 (= 2.5.5-1ubuntu1), libselinux1 (= 3.5-2build2), libsframe1 (= 2.42-3ubuntu1), libsharpyuv-dev (= 1.3.2-0.4build1), libsharpyuv0 (= 1.3.2-0.4build1), libsmartcols1 (= 2.39.3-6ubuntu2), libsqlite3-0 (= 3.45.1-1), libssl3 (= 3.0.10-1ubuntu4), libstdc++-13-dev (= 13.2.0-16ubuntu1), libstdc++6 (= 14-20240221-2.1ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu1), libtiff-dev (= 4.5.1+git230720-4ubuntu1), libtiff6 (= 4.5.1+git230720-4ubuntu1), libtiffxx6 (= 4.5.1+git230720-4ubuntu1), libtinfo6 (= 6.4+20240113-1ubuntu1), libtirpc-common (= 1.3.4+ds-1.1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libubsan1 (= 14-20240221-2.1ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255.4-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6ubuntu2), libvpx-dev (= 1.13.1-2ubuntu1), libvpx8 (= 1.13.1-2ubuntu1), libwebp-dev (= 1.3.2-0.4build1), libwebp7 (= 1.3.2-0.4build1), libwebpdecoder3 (= 1.3.2-0.4build1), libwebpdemux2 (= 1.3.2-0.4build1), libwebpmux3 (= 1.3.2-0.4build1), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libx11-dev (= 2:1.8.7-1), libxapian30 (= 1.4.22-1), libxau-dev (= 1:1.0.9-1build5), libxau6 (= 1:1.0.9-1build5), libxcb1 (= 1.15-1), libxcb1-dev (= 1.15-1), libxdmcp-dev (= 1:1.1.3-0ubuntu5), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxml2 (= 2.9.14+dfsg-1.3ubuntu1), libxpm-dev (= 1:3.5.17-1), libxpm4 (= 1:3.5.17-1), libzstd-dev (= 1.5.5+dfsg2-2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-11.11), login (= 1:4.13+dfsg1-4ubuntu1), lto-disabled-list (= 47), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), opensp (= 1.5.2-13ubuntu3), patch (= 2.7.6-7build2), perl (= 5.38.2-3ubuntu1), perl-base (= 5.38.2-3ubuntu1), perl-modules-5.38 (= 5.38.2-3ubuntu1), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.22), sgml-base (= 1.31), sgml-data (= 2.0.11+nmu1), sysvinit-utils (= 3.08-6ubuntu2), tar (= 1.35+dfsg-3), util-linux (= 2.39.3-6ubuntu2), uuid-dev (= 2.39.3-6ubuntu2), x11proto-dev (= 2023.2-1), xml-core (= 0.19), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1709138113" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libpwiz-dev_3.0.18342-4.1_s390x.deb ----------------------------------- new Debian package, version 2.0. size 5440188 bytes: control archive=10527 bytes. 1234 bytes, 27 lines control 35855 bytes, 353 lines md5sums Package: libpwiz-dev Source: libpwiz Version: 3.0.18342-4.1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 43444 Depends: libpwiz3t64 (= 3.0.18342-4.1) Suggests: libpwiz-doc Section: libdevel Priority: optional Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: library to perform proteomics data analyses (devel files) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . This package ships the library development files. drwxr-xr-x root/root 0 2024-02-28 16:35 ./ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/include/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/include/proteowizard/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/include/proteowizard/libraries/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/include/proteowizard/libraries/CSpline/ -rw-r--r-- root/root 2921 2024-02-28 16:35 ./usr/include/proteowizard/libraries/CSpline/CSpline.h drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/include/proteowizard/libraries/Eigen/ -rw-r--r-- root/root 17633 2024-02-28 16:35 ./usr/include/proteowizard/libraries/Eigen/nnls.h drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/include/proteowizard/libraries/boost_aux/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/include/proteowizard/libraries/boost_aux/boost/ -rw-r--r-- root/root 643 2024-02-28 16:35 ./usr/include/proteowizard/libraries/boost_aux/boost/enum.hpp drwxr-xr-x 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16:35 ./usr/share/doc/libpwiz-dev/ -rw-r--r-- root/root 1279 2020-01-17 14:45 ./usr/share/doc/libpwiz-dev/README.Debian lrwxrwxrwx root/root 0 2024-02-28 16:35 ./usr/share/doc/libpwiz-dev/changelog.Debian.gz -> ../libpwiz3t64/changelog.Debian.gz -rw-r--r-- root/root 46931 2020-09-27 08:55 ./usr/share/doc/libpwiz-dev/copyright libpwiz-tools_3.0.18342-4.1_s390x.deb ------------------------------------- new Debian package, version 2.0. size 112836 bytes: control archive=1229 bytes. 1481 bytes, 29 lines control 542 bytes, 9 lines md5sums Package: libpwiz-tools Source: libpwiz Version: 3.0.18342-4.1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 417 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libpwiz3t64 (= 3.0.18342-4.1), libstdc++6 (>= 13.1) Suggests: libpwiz-doc Section: science Priority: optional Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: ProteoWizard command line tools The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. . This package ships command line tools that include _idconvert_ (conversion of MS identifications) and _msconvert_ (conversion of MS raw data files from/to any supported format). drwxr-xr-x root/root 0 2024-02-28 16:35 ./ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/bin/ -rwxr-xr-x root/root 108688 2024-02-28 16:35 ./usr/bin/idconvert -rwxr-xr-x root/root 18536 2024-02-28 16:35 ./usr/bin/mscat -rwxr-xr-x root/root 186520 2024-02-28 16:35 ./usr/bin/msconvert -rwxr-xr-x root/root 47208 2024-02-28 16:35 ./usr/bin/txt2mzml drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/doc/libpwiz-tools/ lrwxrwxrwx root/root 0 2024-02-28 16:35 ./usr/share/doc/libpwiz-tools/changelog.Debian.gz -> ../libpwiz3t64/changelog.Debian.gz -rw-r--r-- root/root 46931 2020-09-27 08:55 ./usr/share/doc/libpwiz-tools/copyright drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/man/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/man/man1/ -rw-r--r-- root/root 1003 2024-02-28 16:35 ./usr/share/man/man1/idconvert.1.gz -rw-r--r-- root/root 539 2024-02-28 16:35 ./usr/share/man/man1/mscat.1.gz -rw-r--r-- root/root 1597 2024-02-28 16:35 ./usr/share/man/man1/msconvert.1.gz -rw-r--r-- root/root 593 2024-02-28 16:35 ./usr/share/man/man1/txt2mzml.1.gz libpwiz3t64_3.0.18342-4.1_s390x.deb ----------------------------------- new Debian package, version 2.0. size 2908154 bytes: control archive=34882 bytes. 1524 bytes, 28 lines control 1184 bytes, 14 lines md5sums 38 bytes, 1 lines shlibs 426776 bytes, 5089 lines symbols 75 bytes, 2 lines triggers Package: libpwiz3t64 Source: libpwiz Version: 3.0.18342-4.1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 9081 Depends: libboost-chrono1.83.0 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libboost-serialization1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1) Suggests: libpwiz-doc Breaks: libpwiz3 (<< 3.0.18342-4.1) Replaces: libpwiz3 Provides: libpwiz3 (= 3.0.18342-4.1) Section: libs Priority: optional Homepage: http://proteowizard.sourceforge.net/downloads.shtml Description: library to perform proteomics data analyses (runtime) The libpwiz library from the ProteoWizard project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations. . The primary goal of ProteoWizard is to eliminate the existing barriers to proteomic software development so that researchers can focus on the development of new analytic approaches, rather than having to dedicate significant resources to mundane (if important) tasks, like reading data files. drwxr-xr-x root/root 0 2024-02-28 16:35 ./ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/lib/ lrwxrwxrwx root/root 0 2024-02-28 16:35 ./usr/lib/libpwiz.so.3 -> libpwiz.so.3.0.0 -rw-r--r-- root/root 8769336 2024-02-28 16:35 ./usr/lib/libpwiz.so.3.0.0 drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/doc/libpwiz3/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/doc/libpwiz3/example-files/ -rw-r--r-- root/root 2710 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/hello_analyzer.cpp -rw-r--r-- root/root 4112 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/hello_analyzer_2.cpp -rw-r--r-- root/root 2306 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/hello_msdata.cpp -rw-r--r-- root/root 6226 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/mscat.cpp -rw-r--r-- root/root 5133 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/txt2mzml.cpp -rw-r--r-- root/root 3467 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/write_example_files.cpp -rw-r--r-- root/root 1670 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/write_mzid_example_files.cpp -rw-r--r-- root/root 1486 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/write_proteome_example_files.cpp -rw-r--r-- root/root 1827 2018-12-08 03:15 ./usr/share/doc/libpwiz3/example-files/write_traml_example_files.cpp drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/doc/libpwiz3t64/ -rw-r--r-- root/root 656 2024-02-28 16:35 ./usr/share/doc/libpwiz3t64/changelog.Debian.gz -rw-r--r-- root/root 46931 2020-09-27 08:55 ./usr/share/doc/libpwiz3t64/copyright drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 56 2024-02-28 16:33 ./usr/share/lintian/overrides/libpwiz3t64 drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/man/ drwxr-xr-x root/root 0 2024-02-28 16:35 ./usr/share/man/man3/ -rw-r--r-- root/root 1503 2024-02-28 16:35 ./usr/share/man/man3/libpwiz.3.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 4451004 Build-Time: 6280 Distribution: noble-proposed Host Architecture: s390x Install-Time: 56 Job: libpwiz_3.0.18342-4.1.dsc Machine Architecture: s390x Package: libpwiz Package-Time: 6341 Source-Version: 3.0.18342-4.1 Space: 4451004 Status: successful Version: 3.0.18342-4.1 -------------------------------------------------------------------------------- Finished at 2024-02-29T13:50:54Z Build needed 01:45:41, 4451004k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27846873 Scanning for processes to kill in build PACKAGEBUILD-27846873