https://launchpad.net/ubuntu/+source/librostlab/1.0.20-10/+build/18762819 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-001 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:41:01 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 25 Feb 17:13:20 ntpdate[1932]: adjust time server 10.211.37.1 offset -0.001308 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18762819 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb Creating target for build PACKAGEBUILD-18762819 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18762819 Starting target for build PACKAGEBUILD-18762819 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18762819 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18762819 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18762819 Updating target for build PACKAGEBUILD-18762819 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [985 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8650 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5155 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 Packages [158 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [66.3 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 Packages [508 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [275 kB] Fetched 17.0 MB in 8s (2093 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base procps sensible-utils systemd systemd-sysv sysvinit-utils ubuntu-keyring util-linux zlib1g 114 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 68.6 MB of archives. After this operation, 48.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 libc6-dev amd64 2.30-0ubuntu3 [2549 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libc-dev-bin amd64 2.30-0ubuntu3 [71.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 linux-libc-dev amd64 5.4.0-15.18 [1146 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-10-base amd64 10-20200222-1ubuntu1 [18.7 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-s1 amd64 10-20200222-1ubuntu1 [41.8 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc1 amd64 1:10-20200222-1ubuntu1 [41.7 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libc6 amd64 2.30-0ubuntu3 [2725 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu2 [60.1 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9.1 [85.8 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 bash amd64 5.0-6ubuntu1 [638 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 bsdutils amd64 1:2.34-0.1ubuntu7 [63.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 findutils amd64 4.7.0-1ubuntu1 [329 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 grep amd64 3.4-1 [151 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 gzip amd64 1.10-0ubuntu4 [95.3 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 login amd64 1:4.8.1-1ubuntu1 [221 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.1+20191019-1ubuntu1 [172 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9 [3950 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9 [224 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9 [1511 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu1 [53.7 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 libblkid1 amd64 2.34-0.1ubuntu7 [137 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libuuid1 amd64 2.34-0.1ubuntu7 [20.4 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 libfdisk1 amd64 2.34-0.1ubuntu7 [175 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-8-0 amd64 10.34-7 [197 kB] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libselinux1 amd64 3.0-1build1 [68.8 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 libmount1 amd64 2.34-0.1ubuntu7 [149 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.1+20191019-1ubuntu1 [101 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.1+20191019-1ubuntu1 [85.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.1+20191019-1ubuntu1 [132 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 libsmartcols1 amd64 2.34-0.1ubuntu7 [101 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 fdisk amd64 2.34-0.1ubuntu7 [120 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 util-linux amd64 2.34-0.1ubuntu7 [1021 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 libdebconfclient0 amd64 0.251ubuntu1 [6160 B] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 base-passwd amd64 3.5.47 [47.7 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libc-bin amd64 2.30-0ubuntu3 [625 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-2.1ubuntu1 [20.6 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libgpg-error0 amd64 1.37-1 [58.0 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-5ubuntu1 [419 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++6 amd64 10-20200222-1ubuntu1 [502 kB] Get:47 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 systemd-sysv amd64 244.3-1ubuntu1 [9372 B] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-5ubuntu1 [18.7 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-7ubuntu2 [34.1 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1build1 [11.1 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu6 [38.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libcap2 amd64 1:2.32-1 [15.9 kB] Get:54 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libudev1 amd64 244.3-1ubuntu1 [76.9 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu1 [127 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-7 [29.2 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libssl1.1 amd64 1.1.1d-2ubuntu3 [1316 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-3ubuntu1 [182 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB] Get:60 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [240 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libffi7 amd64 3.3-3 [19.6 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libp11-kit0 amd64 0.23.20-1build1 [188 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libtasn1-6 amd64 4.16.0-2 [38.1 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.11.1-2ubuntu2 [793 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libip4tc2 amd64 1.8.4-3ubuntu1 [18.8 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 27-1ubuntu1 [44.2 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libpam0g amd64 1.3.1-5ubuntu4 [55.4 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libseccomp2 amd64 2.4.2-2ubuntu3 [39.9 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 mount amd64 2.34-0.1ubuntu7 [115 kB] Get:71 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 systemd amd64 244.3-1ubuntu1 [3682 kB] Get:72 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libsystemd0 amd64 244.3-1ubuntu1 [261 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libzstd1 amd64 1.4.4+dfsg-3 [237 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg5.90 amd64 1.9.10 [852 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.17-3ubuntu1 [200 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 apt amd64 1.9.10 [1281 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu4 [37.7 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules amd64 1.3.1-5ubuntu4 [250 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 logsave amd64 1.45.5-2ubuntu1 [10.2 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libext2fs2 amd64 1.45.5-2ubuntu1 [183 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 e2fsprogs amd64 1.45.5-2ubuntu1 [527 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 libsepol1 amd64 3.0-1 [252 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage-common all 3.0-1build1 [9876 B] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage1 amd64 3.0-1build1 [85.9 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 passwd amd64 1:4.8.1-1ubuntu1 [797 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main amd64 libgomp1 amd64 10-20200222-1ubuntu1 [101 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 libitm1 amd64 10-20200222-1ubuntu1 [26.2 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 libatomic1 amd64 10-20200222-1ubuntu1 [9300 B] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libasan5 amd64 9.2.1-30ubuntu1 [395 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 liblsan0 amd64 10-20200222-1ubuntu1 [145 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libtsan0 amd64 10-20200222-1ubuntu1 [321 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 libubsan1 amd64 10-20200222-1ubuntu1 [137 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main amd64 libquadmath0 amd64 10-20200222-1ubuntu1 [147 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 g++-9 amd64 9.2.1-30ubuntu1 [8393 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gcc-9 amd64 9.2.1-30ubuntu1 [8229 kB] Get:99 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libstdc++-9-dev amd64 9.2.1-30ubuntu1 [1710 kB] Get:100 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgcc-9-dev amd64 9.2.1-30ubuntu1 [2360 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main amd64 libisl22 amd64 0.22.1-1 [592 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 libcc1-0 amd64 10-20200222-1ubuntu1 [41.4 kB] Get:103 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.34-3ubuntu1 [1612 kB] Get:104 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libbinutils amd64 2.34-3ubuntu1 [475 kB] Get:105 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 binutils amd64 2.34-3ubuntu1 [3376 B] Get:106 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 binutils-common amd64 2.34-3ubuntu1 [207 kB] Get:107 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libctf-nobfd0 amd64 2.34-3ubuntu1 [46.9 kB] Get:108 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libctf0 amd64 2.34-3ubuntu1 [46.6 kB] Get:109 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 cpp-9 amd64 9.2.1-30ubuntu1 [7488 kB] Get:110 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gcc-9-base amd64 9.2.1-30ubuntu1 [19.1 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main amd64 libcom-err2 amd64 1.45.5-2ubuntu1 [9544 B] Get:112 http://ftpmaster.internal/ubuntu focal/main amd64 libss2 amd64 1.45.5-2ubuntu1 [11.3 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main amd64 mawk amd64 1.3.4.20200120-2 [96.0 kB] Get:114 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libprocps8 amd64 2:3.3.16-1ubuntu1 [33.3 kB] Get:115 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 procps amd64 2:3.3.16-1ubuntu1 [233 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main amd64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.31.1-1ubuntu1 [548 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main amd64 openssl amd64 1.1.1d-2ubuntu3 [617 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main amd64 libpng16-16 amd64 1.6.37-2 [179 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main amd64 libassuan0 amd64 2.5.3-7ubuntu2 [35.7 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.17-3ubuntu1 [479 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.17-3ubuntu1 [124 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.17-3ubuntu1 [232 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.6 MB in 4s (16.3 MB/s) (Reading database ... 12741 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_amd64.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-15.18_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.4.0-15.18) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:amd64. Preparing to unpack .../gcc-10-base_10-20200222-1ubuntu1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200222-1ubuntu1) ... Setting up gcc-10-base:amd64 (10-20200222-1ubuntu1) ... Selecting previously unselected package libgcc-s1:amd64. (Reading database ... 12751 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200222-1ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200222-1ubuntu1) ... Replacing files in old package libgcc1:amd64 (1:9.2.1-9ubuntu2) ... 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Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-3ubuntu1) ... Setting up libgcc-9-dev:amd64 (9.2.1-30ubuntu1) ... Setting up gcc-9 (9.2.1-30ubuntu1) ... Setting up systemd-sysv (244.3-1ubuntu1) ... Setting up libstdc++-9-dev:amd64 (9.2.1-30ubuntu1) ... Setting up g++-9 (9.2.1-30ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18762819 amd64 focal-proposed -c chroot:build-PACKAGEBUILD-18762819 --arch=amd64 --dist=focal-proposed --nolog -A librostlab_1.0.20-10.dsc Initiating build PACKAGEBUILD-18762819 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:41:01 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-001.buildd +==============================================================================+ | librostlab 1.0.20-10 (amd64) 25 Feb 2020 17:14 | +==============================================================================+ Package: librostlab Version: 1.0.20-10 Source Version: 1.0.20-10 Distribution: focal-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/librostlab-UH9kdv/librostlab-1.0.20' with '<>' I: NOTICE: Log filtering will replace 'build/librostlab-UH9kdv' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18762819/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- librostlab_1.0.20-10.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-nTlx1b/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-nTlx1b/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nTlx1b/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-nTlx1b/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nTlx1b/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-nTlx1b/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (57.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-nTlx1b/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (40.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-linktree, d-shlibs, doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, texlive-plain-generic, sphinx-common Filtered Build-Depends: debhelper-compat (= 12), dh-linktree, d-shlibs, doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, texlive-plain-generic, sphinx-common dpkg-deb: building package 'sbuild-build-depends-librostlab-dummy' in '/<>/resolver-YBM_I5/apt_archive/sbuild-build-depends-librostlab-dummy.deb'. Ign:1 copy:/<>/resolver-YBM_I5/apt_archive ./ InRelease Get:2 copy:/<>/resolver-YBM_I5/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-YBM_I5/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-YBM_I5/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-YBM_I5/apt_archive ./ Packages [616 B] Fetched 3039 B in 0s (109 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install librostlab build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base graphviz groff-base intltool-debian libann0 libapache-pom-java libarchive-zip-perl libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-9 libcommons-logging-java libcommons-parent-java libcroco3 libdatrie1 libdebhelper-perl libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu65 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libkpathsea6 liblab-gamut1 libllvm9 libltdl7 libmagic-mgc libmagic1 libmpdec2 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsm6 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf preview-latex-style python3 python3-minimal python3.8 python3.8-minimal sphinx-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex default-jre-headless Recommended packages: curl | wget | lynx fonts-liberation libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin javascript-common libltdl-dev libmail-sendmail-perl python-sphinx | python3-sphinx lmodern dvisvgm tex-gyre tipa ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base graphviz groff-base intltool-debian libann0 libapache-pom-java libarchive-zip-perl libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-9 libcommons-logging-java libcommons-parent-java libcroco3 libdatrie1 libdebhelper-perl libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu65 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libkpathsea6 liblab-gamut1 libllvm9 libltdl7 libmagic-mgc libmagic1 libmpdec2 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsm6 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf preview-latex-style python3 python3-minimal python3.8 python3.8-minimal sbuild-build-depends-librostlab-dummy sphinx-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. 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[897 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 po-debconf all 1.0.21 [233 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 debhelper all 12.9ubuntu1 [869 kB] Get:56 http://ftpmaster.internal/ubuntu focal/universe amd64 dh-linktree all 0.7 [11.0 kB] Get:57 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libllvm9 amd64 1:9.0.1-8build2 [14.8 MB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libclang1-9 amd64 1:9.0.1-8build2 [6682 kB] Get:59 http://ftpmaster.internal/ubuntu focal/universe amd64 libxapian30 amd64 1.4.14-2 [661 kB] Get:60 http://ftpmaster.internal/ubuntu focal/universe amd64 doxygen amd64 1.8.16-2build1 [9223 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libfreetype6 amd64 2.10.1-2 [341 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:63 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2019.20200218-1 [15.7 MB] Get:131 http://ftpmaster.internal/ubuntu focal/universe amd64 texlive-pictures all 2019.20200218-1 [4492 kB] Get:132 http://ftpmaster.internal/ubuntu focal/universe amd64 texlive-latex-extra all 2019.202000218-1 [12.5 MB] Get:133 http://ftpmaster.internal/ubuntu focal/universe amd64 texlive-plain-generic all 2019.202000218-1 [24.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 165 MB in 11s (15.3 MB/s) Selecting previously unselected package libpython3.8-minimal:amd64. (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.2~rc2-2_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.2~rc2-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.9-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.2~rc2-2_amd64.deb ... Unpacking python3.8-minimal (3.8.2~rc2-2) ... Setting up libpython3.8-minimal:amd64 (3.8.2~rc2-2) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up python3.8-minimal (3.8.2~rc2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14967 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.0-3ubuntu1_amd64.deb ... Unpacking python3-minimal (3.8.0-3ubuntu1) ... Selecting previously unselected package mime-support. 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Setting up python3-minimal (3.8.0-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Selecting previously unselected package python3. (Reading database ... 15369 files and directories currently installed.) Preparing to unpack .../000-python3_3.8.0-3ubuntu1_amd64.deb ... Unpacking python3 (3.8.0-3ubuntu1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../001-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../002-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../003-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... 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Setting up libkpathsea6:amd64 (2019.20190605.51237-3build1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:amd64 (2.6.4-1ubuntu2) ... Setting up libthai-data (0.1.28-3) ... Setting up libcdt5:amd64 (2.42.2-3build1) ... Setting up libcgraph6:amd64 (2.42.2-3build1) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libpython3.8-stdlib:amd64 (3.8.2~rc2-2) ... Setting up python3.8 (3.8.2~rc2-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1build1) ... Setting up libxml2:amd64 (2.9.10+dfsg-1ubuntu3) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libsynctex2:amd64 (2019.20190605.51237-3build1) ... Setting up libpython3-stdlib:amd64 (3.8.0-3ubuntu1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-0ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Setting up libxcb1:amd64 (1.13.1-5build1) ... Setting up libharfbuzz-icu0:amd64 (2.6.4-1ubuntu2) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libtool (2.4.6-13) ... Setting up libxcb-render0:amd64 (1.13.1-5build1) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.0-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libxcb-shm0:amd64 (1.13.1-5build1) ... Setting up libpaper-utils (1.1.28) ... Setting up tex-common (6.13) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libthai0:amd64 (0.1.28-3) ... Setting up libptexenc1:amd64 (2019.20190605.51237-3build1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libjs-sphinxdoc (1.8.5-5) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up libgvpr2:amd64 (2.42.2-3build1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu2) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libllvm9:amd64 (1:9.0.1-8build2) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libclang1-9 (1:9.0.1-8build2) ... Setting up preview-latex-style (11.91-2ubuntu1) ... Setting up libpango-1.0-0:amd64 (1.44.7-1ubuntu3) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:amd64 (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up doxygen (1.8.16-2build1) ... Setting up sphinx-common (1.8.5-5) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libpangoft2-1.0-0:amd64 (1.44.7-1ubuntu3) ... Setting up libpangocairo-1.0-0:amd64 (1.44.7-1ubuntu3) ... Setting up libxmu6:amd64 (2:1.1.3-0ubuntu1) ... Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libxaw7:amd64 (2:1.0.13-1) ... Setting up libgvc6 (2.42.2-3build1) ... Setting up texlive-binaries (2019.20190605.51237-3build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2019.20200218-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up graphviz (2.42.2-3build1) ... Setting up texlive-plain-generic (2019.202000218-1) ... Setting up texlive-latex-base (2019.20200218-1) ... Setting up texlive-latex-recommended (2019.20200218-1) ... Setting up texlive-pictures (2019.20200218-1) ... Setting up texlive-fonts-recommended (2019.20200218-1) ... Setting up texlive-latex-extra (2019.202000218-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9ubuntu1) ... Setting up dh-linktree (0.7) ... Setting up sbuild-build-depends-librostlab-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for systemd (244.3-1ubuntu1) ... Processing triggers for tex-common (6.13) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-174-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-3ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-30ubuntu1 gcc-9_9.2.1-30ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-30ubuntu1 libstdc++6_10-20200222-1ubuntu1 linux-libc-dev_5.4.0-15.18 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.10 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-3ubuntu1 binutils-common_2.34-3ubuntu1 binutils-x86-64-linux-gnu_2.34-3ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu7 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-30ubuntu1 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libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-jquery_3.3.1~dfsg-3 libjs-sphinxdoc_1.8.5-5 libjs-underscore_1.9.1~dfsg-1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu1 libkpathsea6_2019.20190605.51237-3build1 liblab-gamut1_2.42.2-3build1 libllvm9_1:9.0.1-8build2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200222-1ubuntu1 libltdl7_2.4.6-13 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu7 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpango-1.0-0_1.44.7-1ubuntu3 libpangocairo-1.0-0_1.44.7-1ubuntu3 libpangoft2-1.0-0_1.44.7-1ubuntu3 libpaper-utils_1.1.28 libpaper1_1.1.28 libpathplan4_2.42.2-3build1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libpdfbox-java_1:1.8.16-2 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2build1 libpixman-1-0_0.38.4-0ubuntu1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu1 libptexenc1_2019.20190605.51237-3build1 libpython3-stdlib_3.8.0-3ubuntu1 libpython3.8-minimal_3.8.2~rc2-2 libpython3.8-stdlib_3.8.2~rc2-2 libquadmath0_10-20200222-1ubuntu1 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu3 libselinux1_3.0-1build1 libsemanage-common_3.0-1build1 libsemanage1_3.0-1build1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1ubuntu7 libsqlite3-0_3.31.1-1ubuntu1 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu3 libstdc++-9-dev_9.2.1-30ubuntu1 libstdc++6_10-20200222-1ubuntu1 libsub-override-perl_0.09-2 libsynctex2_2019.20190605.51237-3build1 libsystemd0_244.3-1ubuntu1 libtasn1-6_4.16.0-2 libteckit0_2.5.8+ds2-5ubuntu1 libtexlua53_2019.20190605.51237-3build1 libtexluajit2_2019.20190605.51237-3build1 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ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 preview-latex-style_11.91-2ubuntu1 procps_2:3.3.16-1ubuntu1 python3_3.8.0-3ubuntu1 python3-minimal_3.8.0-3ubuntu1 python3.8_3.8.2~rc2-2 python3.8-minimal_3.8.2~rc2-2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sphinx-common_1.8.5-5 systemd_244.3-1ubuntu1 systemd-sysv_244.3-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 t1utils_1.41-3 tar_1.30+dfsg-6 tex-common_6.13 texlive-base_2019.20200218-1 texlive-binaries_2019.20190605.51237-3build1 texlive-fonts-recommended_2019.20200218-1 texlive-latex-base_2019.20200218-1 texlive-latex-extra_2019.202000218-1 texlive-latex-recommended_2019.20200218-1 texlive-pictures_2019.20200218-1 texlive-plain-generic_2019.202000218-1 tzdata_2019c-3 ubuntu-keyring_2020.02.11.1 ucf_3.0038+nmu1 util-linux_2.34-0.1ubuntu7 x11-common_1:7.7+19ubuntu14 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Feb 25 07:40:35 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./librostlab_1.0.20-10.dsc dpkg-source: info: extracting librostlab in librostlab-1.0.20 dpkg-source: info: unpacking librostlab_1.0.20.orig.tar.gz dpkg-source: info: unpacking librostlab_1.0.20-10.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18762819 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18762819 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18762819 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package librostlab dpkg-buildpackage: info: source version 1.0.20-10 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with linktree dh_clean debian/rules binary dh binary --with linktree dh_update_autotools_config dh_autoreconf configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG 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libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode 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PROJECT='librostlab' DOCDIR='../doxygen-doc' VERSION='1.0.20' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 847 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1032 of file './Doxyfile' has become obsolete. 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Otherwise you run the risk that the wrong font is being used for dot generated graphs. Notice: Output directory '../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /<>/lib/rostlab/aux_functions.h... Parsing file /<>/lib/rostlab/aux_functions.h... Preprocessing /<>/lib/rostlab/blosum62.h... Parsing file /<>/lib/rostlab/blosum62.h... Preprocessing /<>/lib/rostlab/cwd_resource.h... Parsing file /<>/lib/rostlab/cwd_resource.h... Preprocessing /<>/lib/rostlab/cxxgrp.h... Parsing file /<>/lib/rostlab/cxxgrp.h... Preprocessing /<>/lib/rostlab/cxxpwd.h... Parsing file /<>/lib/rostlab/cxxpwd.h... 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Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/aux_functions.h... Generating code for file rostlab/blosum62.h... Generating code for file rostlab/cwd_resource.h... Generating code for file rostlab/cxxgrp.h... Generating code for file rostlab/cxxpwd.h... Generating code for file rostlab/euid_egid_resource.h... Generating code for file rostlab/file_lock_resource.h... Generating code for file rostlab/mapAA2int.h... 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Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace rostlab Generating docs for compound rostlab::cwd_resource... Generating docs for compound rostlab::cxx_group... Generating docs for compound rostlab::cxx_passwd... Generating docs for compound rostlab::error_backtracer... Generating docs for compound rostlab::euid_egid_resource... Generating docs for compound rostlab::exception... Generating docs for compound rostlab::file_lock_resource... Generating docs for nested compound rostlab::file_lock_resource::wouldblock... Generating docs for compound rostlab::gid_not_found_error... Generating docs for compound rostlab::gname_not_found_error... Generating docs for compound rostlab::runtime_error... Generating docs for compound rostlab::uid_not_found_error... Generating docs for compound rostlab::umask_resource... Generating docs for compound rostlab::uname_not_found_error... 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] [11] [12] [13] [14] [15] [16]) (./namespacerostlab_1_1bio.tex [17]) (./namespacerostlab_1_1bio_1_1fmt.tex) [18] Chapter 6. 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Transcript written on refman.log. make[2]: Leaving directory '/<>/lib' make[1]: Leaving directory '/<>' dh_auto_build -Nlibrostlab-doc make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in lib make[3]: Entering directory '/<>/lib' make all-am make[4]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -fPIC -DPIC -o .libs/librostlab_la-blosum62.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -o librostlab_la-blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wall -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o librostlab.la -rpath /usr/lib/x86_64-linux-gnu librostlab_la-blosum62.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o .libs/librostlab_la-blosum62.o -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab.so.3 -o .libs/librostlab.so.3.0.0 libtool: link: (cd ".libs" && rm -f "librostlab.so.3" && ln -s "librostlab.so.3.0.0" "librostlab.so.3") libtool: link: (cd ".libs" && rm -f "librostlab.so" && ln -s "librostlab.so.3.0.0" "librostlab.so") libtool: link: ar cr .libs/librostlab.a librostlab_la-blosum62.o libtool: link: ranlib .libs/librostlab.a libtool: link: ( cd ".libs" && rm -f "librostlab.la" && ln -s "../librostlab.la" "librostlab.la" ) make[4]: Leaving directory '/<>/lib' make[3]: Leaving directory '/<>/lib' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in lib make[2]: Entering directory '/<>/lib' make check-am make[3]: Entering directory '/<>/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/lib' make[2]: Leaving directory '/<>/lib' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in lib make[2]: Entering directory '/<>/lib' make install-am make[3]: Entering directory '/<>/lib' make[4]: Entering directory '/<>/lib' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librostlab.so.3.0.0 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.so.3.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so.3 || { rm -f librostlab.so.3 && ln -s librostlab.so.3.0.0 librostlab.so.3; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so || { rm -f librostlab.so && ln -s librostlab.so.3.0.0 librostlab.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.la libtool: install: /usr/bin/install -c .libs/librostlab.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.a libtool: install: ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/aux_functions.h rostlab/blosum62.h rostlab/cwd_resource.h rostlab/cxxgrp.h rostlab/cxxpwd.h rostlab/euid_egid_resource.h rostlab/file_lock_resource.h rostlab/mapAA2int.h rostlab/readFasta.h rostlab/rostlab_stdexcept.h rostlab/rostlab_stdio.h rostlab/rostlab_stdlib.h rostlab/umask_resource.h '/<>/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/<>/lib' make[3]: Leaving directory '/<>/lib' make[2]: Leaving directory '/<>/lib' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab3-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/librostlab3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.a debian/librostlab3-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.so debian/librostlab3-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.so.3 debian/librostlab3/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.so.3.0.0 debian/librostlab3/usr/lib/x86_64-linux-gnu PKGDEV=librostlab3-dev PKGSHL=librostlab3 install -d -m 755 debian/librostlab3-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab3-dev/usr/include make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs dh_installdocs: warning: Cannot auto-detect main package for librostlab-doc. If the default is wrong, please use --doc-main-package find debian -name "*_*.md5" -delete make[1]: Leaving directory '/<>' dh_installchangelogs dh_installexamples dh_perl dh_link dh_linktree dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xlibrostlab.tag make[1]: Leaving directory '/<>' dh_fixperms dh_missing dh_missing: warning: usr/lib/x86_64-linux-gnu/librostlab.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: librostlab-doc (0), librostlab3 (0), librostlab3-dev (0) * dh_installdocs: librostlab-doc (3), librostlab3 (0), librostlab3-dev (2) * dh_installexamples: librostlab-doc (0), librostlab3 (0), librostlab3-dev (1) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${js:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing librostlab3 (in debian/librostlab3); do_strip: , oemstrip: pkgstriptranslations: processing librostlab3-dev (in debian/librostlab3-dev); do_strip: , oemstrip: INFO: pkgstriptranslations version 144 pkgstriptranslations: processing librostlab-doc (in debian/librostlab-doc); do_strip: , oemstrip: pkgstriptranslations: processing librostlab3-dbgsym (in debian/.debhelper/librostlab3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librostlab3-dev/DEBIAN/control, package librostlab3-dev, directory debian/librostlab3-dev INFO: pkgstripfiles: waiting for lock (librostlab3-dev) ... pkgstripfiles: processing control file: debian/librostlab-doc/DEBIAN/control, package librostlab-doc, directory debian/librostlab-doc INFO: pkgstripfiles: waiting for lock (librostlab-doc) ... pkgstripfiles: processing control file: debian/librostlab3/DEBIAN/control, package librostlab3, directory debian/librostlab3 pkgstripfiles: Truncating usr/share/doc/librostlab3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package librostlab3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librostlab3' in '../librostlab3_1.0.20-10_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/librostlab3/dbgsym-root/DEBIAN/control, package librostlab3-dbgsym, directory debian/.debhelper/librostlab3/dbgsym-root dpkg-deb: building package 'librostlab3-dbgsym' in 'debian/.debhelper/scratch-space/build-librostlab3/librostlab3-dbgsym_1.0.20-10_amd64.deb'. Renaming librostlab3-dbgsym_1.0.20-10_amd64.deb to librostlab3-dbgsym_1.0.20-10_amd64.ddeb Searching for duplicated docs in dependency librostlab3... symlinking changelog.Debian.gz in librostlab3-dev to file in librostlab3 INFO: pkgstripfiles: waiting for lock (librostlab-doc) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package librostlab3-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librostlab3-dev' in '../librostlab3-dev_1.0.20-10_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/librostlab-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package librostlab-doc (to save build time) dpkg-deb: building package 'librostlab-doc' in '../librostlab-doc_1.0.20-10_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../librostlab_1.0.20-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200225-1718 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ librostlab_1.0.20-10_amd64.changes: ----------------------------------- Format: 1.8 Date: Tue, 25 Feb 2020 08:30:40 +0100 Source: librostlab Binary: librostlab-doc librostlab3 librostlab3-dev Architecture: all amd64 Version: 1.0.20-10 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: librostlab-doc - C++ library for computational biology (documentation) librostlab3 - C++ library for computational biology librostlab3-dev - C++ library for computational biology (development) Changes: librostlab (1.0.20-10) unstable; urgency=medium . [ Nilesh Patra ] * Modify test to print values * Use AUTOPKGTEST_TMP * Add "Rules-Requires-Root:no" * Switch to https . [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Unique name run-unit-test for autopkgtest script Checksums-Sha1: 5f902247ccb4a5cff05f700cbc6328d54fad42c8 800644 librostlab-doc_1.0.20-10_all.deb 8c14c610577a9d34902d662d615bd62adc1ff709 2516 librostlab3-dbgsym_1.0.20-10_amd64.ddeb b0cdc58bc1c44f775ac842ccb5810deae432ad0b 11276 librostlab3-dev_1.0.20-10_amd64.deb 3e2189726d5d89ca75d6c1b4d5f379d654292c6c 5388 librostlab3_1.0.20-10_amd64.deb ca9dcd3bb5c31f9dc91ea6190bffb25dd61adbab 9568 librostlab_1.0.20-10_amd64.buildinfo Checksums-Sha256: 4b761e06b88ae5384aee1b8bb17144700fa0efa6eef4dafaf39008aa476c439a 800644 librostlab-doc_1.0.20-10_all.deb 471463bfb79281a56c6398aa75a574e771e001c51b04c85da24d9c0124a9dcab 2516 librostlab3-dbgsym_1.0.20-10_amd64.ddeb 2aa9303d0bdf5e031994ad2d8581e3b6516c3b6be9f6b204bc34920b09cd7f1c 11276 librostlab3-dev_1.0.20-10_amd64.deb 839ce25c1ef675519ceb557f26d4603f1996104a8dc651da09e84ff40c4acdcc 5388 librostlab3_1.0.20-10_amd64.deb f7d8945698ef4fb318241f0fd085d0983202f103373e34b84a16fd90608058db 9568 librostlab_1.0.20-10_amd64.buildinfo Files: 9189940fc32eb68886c2b9f915064bc3 800644 doc optional librostlab-doc_1.0.20-10_all.deb f37d11b8223d6514e4ef26bc53882539 2516 debug optional librostlab3-dbgsym_1.0.20-10_amd64.ddeb 1ca389c285791871edb711d9e41d9e18 11276 libdevel optional librostlab3-dev_1.0.20-10_amd64.deb a6f0ff734e6253885b7a7262241f6e06 5388 libs optional librostlab3_1.0.20-10_amd64.deb 84a15293a545c9b2694ce64b0dac998b 9568 science optional librostlab_1.0.20-10_amd64.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ librostlab-doc_1.0.20-10_all.deb -------------------------------- new debian package, version 2.0. size 800644 bytes: control archive=7516 bytes. 1040 bytes, 27 lines control 28170 bytes, 298 lines md5sums Package: librostlab-doc Source: librostlab Version: 1.0.20-10 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2002 Depends: sphinx-common (>= 1.8.5) Section: doc Priority: optional Homepage: https://rostlab.org/ Description: C++ library for computational biology (documentation) This library was developed by the Rost Lab. The lab's research is driven by a conviction that protein and DNA sequences encode a significant core of information about the ultimate structure and function of genetic material and its gene products. . The library provides the following facilities: * current working directory resource * exception with stack backtrace * file lock resource * passwd and group structures for C++ * effective uid and gid resource * rostlab::bio::seq class with stream input operator for FASTA format * umask resource . 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07:30 ./usr/share/doc/librostlab-doc/html/tabs.css -rw-r--r-- root/root 4854 2020-02-25 07:30 ./usr/share/doc/librostlab-doc/html/umask__resource_8h.html -rw-r--r-- root/root 289 2020-02-25 07:30 ./usr/share/doc/librostlab-doc/html/umask__resource_8h__incl.map -rw-r--r-- root/root 5581 2020-02-25 07:30 ./usr/share/doc/librostlab-doc/html/umask__resource_8h__incl.png -rw-r--r-- root/root 11501 2020-02-25 07:30 ./usr/share/doc/librostlab-doc/html/umask__resource_8h_source.html -rw-r--r-- root/root 370039 2020-02-25 07:30 ./usr/share/doc/librostlab-doc/librostlab.pdf.gz -rw-r--r-- root/root 41378 2020-02-25 07:30 ./usr/share/doc/librostlab-doc/librostlab.tag librostlab3-dev_1.0.20-10_amd64.deb ----------------------------------- new debian package, version 2.0. size 11276 bytes: control archive=1488 bytes. 1189 bytes, 32 lines control 1293 bytes, 18 lines md5sums Package: librostlab3-dev Source: librostlab Version: 1.0.20-10 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 73 Depends: librostlab3 (= 1.0.20-10) Suggests: librostlab-doc Conflicts: librostlab-dev Replaces: librostlab0-dev Provides: librostlab-dev Section: libdevel Priority: optional Homepage: https://rostlab.org/ Description: C++ library for computational biology (development) This library was developed by the Rost Lab. The lab's research is driven by a conviction that protein and DNA sequences encode a significant core of information about the ultimate structure and function of genetic material and its gene products. . The library provides the following facilities: * current working directory resource * exception with stack backtrace * file lock resource * passwd and group structures for C++ * effective uid and gid resource * rostlab::bio::seq class with stream input operator for FASTA format * umask resource . This package contains files necessary for developing applications with librostlab. drwxr-xr-x root/root 0 2020-02-25 07:30 ./ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/include/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/include/rostlab/ -rw-r--r-- root/root 5661 2020-02-25 07:30 ./usr/include/rostlab/aux_functions.h -rw-r--r-- root/root 1149 2020-02-25 07:30 ./usr/include/rostlab/blosum62.h -rw-r--r-- root/root 2243 2020-02-25 07:30 ./usr/include/rostlab/cwd_resource.h -rw-r--r-- root/root 5180 2020-02-25 07:30 ./usr/include/rostlab/cxxgrp.h -rw-r--r-- root/root 3803 2020-02-25 07:30 ./usr/include/rostlab/cxxpwd.h -rw-r--r-- root/root 3107 2020-02-25 07:30 ./usr/include/rostlab/euid_egid_resource.h -rw-r--r-- root/root 3601 2020-02-25 07:30 ./usr/include/rostlab/file_lock_resource.h -rw-r--r-- root/root 3450 2020-02-25 07:30 ./usr/include/rostlab/mapAA2int.h -rw-r--r-- root/root 3443 2020-02-25 07:30 ./usr/include/rostlab/readFasta.h -rw-r--r-- root/root 2268 2020-02-25 07:30 ./usr/include/rostlab/rostlab_stdexcept.h -rw-r--r-- root/root 3159 2020-02-25 07:30 ./usr/include/rostlab/rostlab_stdio.h -rw-r--r-- root/root 3193 2020-02-25 07:30 ./usr/include/rostlab/rostlab_stdlib.h -rw-r--r-- root/root 1430 2020-02-25 07:30 ./usr/include/rostlab/umask_resource.h drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 2020 2020-02-25 07:30 ./usr/lib/x86_64-linux-gnu/librostlab.a lrwxrwxrwx root/root 0 2020-02-25 07:30 ./usr/lib/x86_64-linux-gnu/librostlab.so -> librostlab.so.3.0.0 drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/share/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/share/doc/librostlab3-dev/ -rw-r--r-- root/root 749 2020-02-25 07:30 ./usr/share/doc/librostlab3-dev/README.test lrwxrwxrwx root/root 0 2020-02-25 07:30 ./usr/share/doc/librostlab3-dev/changelog.Debian.gz -> ../librostlab3/changelog.Debian.gz -rw-r--r-- root/root 2076 2020-02-25 07:30 ./usr/share/doc/librostlab3-dev/copyright drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/share/doc/librostlab3-dev/examples/ -rw-r--r-- root/root 517 2020-02-25 07:30 ./usr/share/doc/librostlab3-dev/examples/blosum62_test.cpp -rw-r--r-- root/root 689 2020-02-25 07:30 ./usr/share/doc/librostlab3-dev/installation-test librostlab3_1.0.20-10_amd64.deb ------------------------------- new debian package, version 2.0. size 5388 bytes: control archive=1120 bytes. 988 bytes, 26 lines control 229 bytes, 3 lines md5sums 37 bytes, 1 lines shlibs 72 bytes, 2 lines symbols 72 bytes, 2 lines triggers Package: librostlab3 Source: librostlab Version: 1.0.20-10 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 32 Section: libs Priority: optional Homepage: https://rostlab.org/ Description: C++ library for computational biology This library was developed by the Rost Lab. The lab's research is driven by a conviction that protein and DNA sequences encode a significant core of information about the ultimate structure and function of genetic material and its gene products. . The library provides the following facilities: * current working directory resource * exception with stack backtrace * file lock resource * passwd and group structures for C++ * effective uid and gid resource * rostlab::bio::seq class with stream input operator for FASTA format * umask resource . This package contains the shared library. drwxr-xr-x root/root 0 2020-02-25 07:30 ./ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2020-02-25 07:30 ./usr/lib/x86_64-linux-gnu/librostlab.so.3 -> librostlab.so.3.0.0 -rw-r--r-- root/root 13952 2020-02-25 07:30 ./usr/lib/x86_64-linux-gnu/librostlab.so.3.0.0 drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/share/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-25 07:30 ./usr/share/doc/librostlab3/ -rw-r--r-- root/root 1628 2020-02-25 07:30 ./usr/share/doc/librostlab3/changelog.Debian.gz -rw-r--r-- root/root 2076 2020-02-25 07:30 ./usr/share/doc/librostlab3/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 12684 Build-Time: 51 Distribution: focal-proposed Host Architecture: amd64 Install-Time: 128 Job: librostlab_1.0.20-10.dsc Machine Architecture: amd64 Package: librostlab Package-Time: 182 Source-Version: 1.0.20-10 Space: 12684 Status: successful Version: 1.0.20-10 -------------------------------------------------------------------------------- Finished at 20200225-1718 Build needed 00:03:02, 12684k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18762819 Scanning for processes to kill in build PACKAGEBUILD-18762819