Ubuntu
libseqlib package

libseqlib 1.1.1+dfsg-3 source package in Ubuntu

Changelog

libseqlib (1.1.1+dfsg-3) unstable; urgency=medium

  * Remove liblzma-dev again since it is only used for dist target
  * Build-Depends: libhts-private-dev since libhts-dev does not provide
    private cran headers any more (see bug #881170)
  * Explicitly use -I/usr/include/htslib instead of pkg-config in libhts-dev
    since upstream insisted that the cram headers are private
    (see bug #881359)
  * d/rules: do not parse d/changelog
  * Standards-Version: 4.1.2

 -- Andreas Tille <email address hidden>  Sun, 10 Dec 2017 14:24:34 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
libseqlib_1.1.1+dfsg-3.dsc 2.2 KiB 1cf7dc9c52eda99ccf6759e23a4a06b859c44795677a04a1fae7066401de8134
libseqlib_1.1.1+dfsg.orig.tar.xz 159.1 KiB 7c9a95a3ecb093e5eac5490d771871565f69bbfc50f62d3fe6d3802878753bd6
libseqlib_1.1.1+dfsg-3.debian.tar.xz 6.5 KiB f8a48f1a41cc5ae429a178c4932ee70707995172f897537fd800175b5ed8e95e

Available diffs

No changes file available.

Binary packages built by this source

libseqlib-dev: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.
 .
 This package contains the header files and static library.

libseqlib0: C++ htslib/bwa-mem/fermi interface for interrogating sequence data

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.

libseqlib0-dbgsym: debug symbols for libseqlib0