RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-033 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Dec 06:24:35 ntpdate[1783]: adjust time server 10.211.37.1 offset -0.007979 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13839779 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-13839779 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13839779 Starting target for build PACKAGEBUILD-13839779 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13839779 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13839779 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13839779 Updating target for build PACKAGEBUILD-13839779 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1009 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8363 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4915 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [48.3 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [24.4 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [246 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [121 kB] Fetched 15.7 MB in 3s (5121 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libnghttp2-14 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libnghttp2-14 The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libasn1-8-heimdal libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libffi6 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libidn2-0 libip4tc0 libitm1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblsan0 libmount1 libmpx2 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libquadmath0 libroken18-heimdal libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev lsb-base mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 116 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 63.2 MB of archives. After this operation, 1078 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdutils amd64 1:2.30.2-0.1ubuntu1 [60.1 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 coreutils amd64 8.26-3ubuntu4 [1213 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 debianutils amd64 4.8.3 [85.8 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg amd64 1.19.0.4ubuntu1 [1145 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6-dev amd64 2.26-0ubuntu2 [2524 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-dev-bin amd64 2.26-0ubuntu2 [69.6 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 linux-libc-dev amd64 4.14.0-13.15 [969 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 libquadmath0 amd64 7.2.0-18ubuntu2 [132 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 libitm1 amd64 7.2.0-18ubuntu2 [27.6 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7-base amd64 7.2.0-18ubuntu2 [19.0 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc1 amd64 1:7.2.0-18ubuntu2 [39.4 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpx2 amd64 7.2.0-18ubuntu2 [11.8 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libgomp1 amd64 7.2.0-18ubuntu2 [76.3 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 libatomic1 amd64 7.2.0-18ubuntu2 [8976 B] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 libasan4 amd64 7.2.0-18ubuntu2 [358 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 liblsan0 amd64 7.2.0-18ubuntu2 [134 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libtsan0 amd64 7.2.0-18ubuntu2 [281 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 libubsan0 amd64 7.2.0-18ubuntu2 [126 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 libcilkrts5 amd64 7.2.0-18ubuntu2 [42.4 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 cpp-7 amd64 7.2.0-18ubuntu2 [6730 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libcc1-0 amd64 7.2.0-18ubuntu2 [38.7 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 g++-7 amd64 7.2.0-18ubuntu2 [7555 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7 amd64 7.2.0-18ubuntu2 [7421 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc-7-dev amd64 7.2.0-18ubuntu2 [2372 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++-7-dev amd64 7.2.0-18ubuntu2 [1455 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++6 amd64 7.2.0-18ubuntu2 [397 kB] Get:28 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1.1 [241 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 libbinutils amd64 2.29.1-12ubuntu1 [503 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils amd64 2.29.1-12ubuntu1 [3408 B] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-common amd64 2.29.1-12ubuntu1 [190 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-x86-64-linux-gnu amd64 2.29.1-12ubuntu1 [1825 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6 amd64 2.26-0ubuntu2 [2778 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fslibs amd64 1.43.7-1 [157 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fsprogs amd64 1.43.7-1 [498 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 findutils amd64 4.6.0+git+20170828-2 [291 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-modules-5.26 all 5.26.1-3 [2761 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 libperl5.26 amd64 5.26.1-3 [3541 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 perl amd64 5.26.1-3 [201 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-base amd64 5.26.1-3 [1389 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 libuuid1 amd64 2.30.2-0.1ubuntu1 [14.8 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 libblkid1 amd64 2.30.2-0.1ubuntu1 [119 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 libsmartcols1 amd64 2.30.2-0.1ubuntu1 [78.8 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 libfdisk1 amd64 2.30.2-0.1ubuntu1 [157 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3 amd64 2:8.39-8 [229 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 libselinux1 amd64 2.7-2 [68.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 libmount1 amd64 2.30.2-0.1ubuntu1 [131 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 fdisk amd64 2.30.2-0.1ubuntu1 [105 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 util-linux amd64 2.30.2-0.1ubuntu1 [879 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 base-passwd amd64 3.5.44 [47.2 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.26-0ubuntu2 [593 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 sysvinit-utils amd64 2.88dsf-59.10ubuntu1 [18.6 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libudev1 amd64 235-3ubuntu3 [54.8 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 libapt-pkg5.0 amd64 1.6~alpha5 [778 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 debconf all 1.5.65 [124 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 adduser all 3.116ubuntu1 [163 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main amd64 libgpg-error0 amd64 1.27-5 [36.9 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcrypt20 amd64 1.8.1-4 [417 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.1.15-1ubuntu8 [186 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 apt amd64 1.6~alpha5 [1145 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 libapparmor1 amd64 2.11.0-2ubuntu18 [28.8 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.2 [13.0 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn11 amd64 1.33-2.1 [46.0 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 libip4tc0 amd64 1.6.1-2ubuntu2 [19.6 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 mount amd64 2.30.2-0.1ubuntu1 [110 kB] Get:67 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd amd64 235-3ubuntu3 [2834 kB] Get:68 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libsystemd0 amd64 235-3ubuntu3 [197 kB] Get:69 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd-sysv amd64 235-3ubuntu3 [13.1 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap-ng0 amd64 0.7.7-3.1 [11.1 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main amd64 libcomerr2 amd64 1.43.7-1 [11.4 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage-common all 2.7-2 [6916 B] Get:73 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage1 amd64 2.7-2 [84.6 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main amd64 libss2 amd64 1.43.7-1 [11.1 kB] Get:75 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libffi6 amd64 3.2.1-7 [18.0 kB] Get:76 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libnettle6 amd64 3.4-1 [109 kB] Get:77 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libhogweed4 amd64 3.4-1 [137 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 libp11-kit0 amd64 0.23.9-2 [187 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main amd64 libtasn1-6 amd64 4.12-3 [36.1 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main amd64 lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main amd64 sensible-utils all 0.0.11 [14.8 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main amd64 libassuan0 amd64 2.5.1-1 [35.0 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main amd64 pinentry-curses amd64 1.0.0-3 [34.7 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main amd64 libnpth0 amd64 1.5-3 [7668 B] Get:85 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg amd64 2.1.15-1ubuntu8 [780 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg-agent amd64 2.1.15-1ubuntu8 [255 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main amd64 libsqlite3-0 amd64 3.21.0-1 [492 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-1 [41.3 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-1 [175 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-1 [29.3 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-1 [85.9 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-1 [47.8 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-1 [107 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-1 [206 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-1 [14.8 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-1 [96.5 kB] Get:97 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu15 [1080 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main amd64 multiarch-support amd64 2.26-0ubuntu2 [6832 B] Get:99 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 openssl amd64 1.0.2g-1ubuntu15 [495 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main amd64 tzdata all 2017c-1 [188 kB] Get:101 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgssapi-krb5-2 amd64 1.15.2-2 [121 kB] Get:102 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libkrb5-3 amd64 1.15.2-2 [278 kB] Get:103 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libkrb5support0 amd64 1.15.2-2 [31.5 kB] Get:104 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libk5crypto3 amd64 1.15.2-2 [85.4 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu1 [9308 B] Get:106 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn2-0 amd64 2.0.4-1 [93.2 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/universe amd64 apt-transport-https all 1.6~alpha5 [1692 B] Get:109 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main amd64 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] Get:112 http://ftpmaster.internal/ubuntu bionic/main amd64 libnghttp2-14 amd64 1.28.0-1 [77.7 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/main amd64 libpsl5 amd64 0.19.1-4 [41.2 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main amd64 libcurl3-gnutls amd64 7.57.0-1ubuntu1 [210 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main amd64 liblockfile-bin amd64 1.14-1.1 [11.9 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main amd64 liblockfile1 amd64 1.14-1.1 [6804 B] Get:117 http://ftpmaster.internal/ubuntu bionic/main amd64 optipng amd64 0.7.6-1.1 [83.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 63.2 MB in 3s (21.0 MB/s) (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_amd64.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.30.2-0.1ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.30.2-0.1ubuntu1) over (1:2.30.1-0ubuntu4) ... Setting up bsdutils (1:2.30.2-0.1ubuntu1) ... (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_amd64.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12676 files and directories currently installed.) 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Universal Time is now: Thu Dec 21 06:25:06 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (235-3ubuntu3) ... Setting up libubsan0:amd64 (7.2.0-18ubuntu2) ... Setting up libtsan0:amd64 (7.2.0-18ubuntu2) ... Setting up liblockfile1:amd64 (1.14-1.1) ... Setting up linux-libc-dev:amd64 (4.14.0-13.15) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up perl-modules-5.26 (5.26.1-3) ... Setting up libkrb5support0:amd64 (1.15.2-2) ... Setting up optipng (0.7.6-1.1) ... Setting up cpp-7 (7.2.0-18ubuntu2) ... Setting up lsb-base (9.20170808ubuntu1) ... Setting up liblsan0:amd64 (7.2.0-18ubuntu2) ... Setting up binutils-common:amd64 (2.29.1-12ubuntu1) ... Setting up libmpx2:amd64 (7.2.0-18ubuntu2) ... Setting up sensible-utils (0.0.11) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:amd64 (5.26.1-3) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up openssl (1.0.2g-1ubuntu15) ... 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Setting up binutils-x86-64-linux-gnu (2.29.1-12ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up libgssapi-krb5-2:amd64 (1.15.2-2) ... Setting up binutils (2.29.1-12ubuntu1) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up gcc-7 (7.2.0-18ubuntu2) ... Setting up g++-7 (7.2.0-18ubuntu2) ... Setting up libcurl3-gnutls:amd64 (7.57.0-1ubuntu1) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13839779 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-13839779 --arch=amd64 --dist=bionic-proposed --nolog -A libseqlib_1.1.1+dfsg-3.dsc Initiating build PACKAGEBUILD-13839779 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-033.buildd +==============================================================================+ | libseqlib 1.1.1+dfsg-3 (amd64) 21 Dec 2017 06:25 | +==============================================================================+ Package: libseqlib Version: 1.1.1+dfsg-3 Source Version: 1.1.1+dfsg-3 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/libseqlib-u6DptX/libseqlib-1.1.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-u6DptX' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13839779/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libseqlib_1.1.1+dfsg-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-E7deGd/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-E7deGd/apt_archive ./ InRelease Get:2 copy:/<>/resolver-E7deGd/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-E7deGd/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-E7deGd/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-E7deGd/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (117 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libnghttp2-14 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-E7deGd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12688 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), d-shlibs, pkg-config, libhts-private-dev, libcurl4-openssl-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev Filtered Build-Depends: debhelper (>= 10), d-shlibs, pkg-config, libhts-private-dev, libcurl4-openssl-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev dpkg-deb: building package 'sbuild-build-depends-libseqlib-dummy' in '/<>/resolver-wYK2Ou/apt_archive/sbuild-build-depends-libseqlib-dummy.deb'. Ign:1 copy:/<>/resolver-wYK2Ou/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wYK2Ou/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-wYK2Ou/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wYK2Ou/apt_archive ./ Sources [295 B] Get:5 copy:/<>/resolver-wYK2Ou/apt_archive ./ Packages [617 B] Fetched 3031 B in 0s (117 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libseqlib build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libbwa-dev libcroco3 libcurl3 libcurl4-openssl-dev libfile-stripnondeterminism-perl libfml-dev libfml0 libfreetype6 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts-dev libhts-private-dev libhts2 libicu-le-hb0 libicu60 libjsoncpp-dev libjsoncpp1 liblzma-dev libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libssw-dev libssw0 libtimedate-perl libtool libxml2 m4 man-db pkg-config po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssl1.0-dev | libssl-dev liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser apparmor libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libbwa-dev libcroco3 libcurl3 libcurl4-openssl-dev libfile-stripnondeterminism-perl libfml-dev libfml0 libfreetype6 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts-dev libhts-private-dev libhts2 libicu-le-hb0 libicu60 libjsoncpp-dev libjsoncpp1 liblzma-dev libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libssw-dev libssw0 libtimedate-perl libtool libxml2 m4 man-db pkg-config po-debconf sbuild-build-depends-libseqlib-dummy zlib1g-dev 0 upgraded, 50 newly installed, 1 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After this operation, 71.8 MB of additional disk space will be used. 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bionic-proposed/main amd64 libfreetype6 amd64 2.8.1-0.1ubuntu2 [334 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libgraphite2-3 amd64 1.3.10-8 [77.9 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libharfbuzz0b amd64 1.7.2-1 [232 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libicu-le-hb0 amd64 1.0.3+git161113-4 [14.3 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 libicu60 amd64 60.2-1ubuntu1 [8064 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 libxml2 amd64 2.9.4+dfsg1-5.2ubuntu1 [668 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext-base amd64 0.19.8.1-4ubuntu2 [49.6 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libsigsegv2 amd64 2.11-1 [13.2 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 autoconf all 2.69-11 [322 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 autotools-dev all 20171216.1 [39.7 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 autopoint all 0.19.8.1-4ubuntu2 [412 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/universe amd64 d-shlibs all 0.81 [9722 B] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 libtool all 2.4.6-2 [194 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-autoreconf all 15 [15.8 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-strip-nondeterminism all 0.040-1 [5196 B] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext amd64 0.19.8.1-4ubuntu2 [1087 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 po-debconf all 1.0.20 [232 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 debhelper all 11ubuntu1 [887 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/universe amd64 libbwa-dev amd64 0.7.17-1 [112 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 libcurl3 amd64 7.57.0-1ubuntu1 [212 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 libcurl4-openssl-dev amd64 7.57.0-1ubuntu1 [292 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/universe amd64 libfml0 amd64 0.1-4 [68.6 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/universe amd64 libfml-dev amd64 0.1-4 [81.2 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libhts2 amd64 1.6-3 [289 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 liblzma-dev amd64 5.2.2-1.3 [145 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libhts-dev amd64 1.6-3 [368 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libhts-private-dev all 1.6-3 [29.1 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/universe amd64 libssw0 amd64 1.1-1 [16.2 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/universe amd64 libssw-dev amd64 1.1-1 [18.6 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 libjsoncpp1 amd64 1.7.4-3 [73.6 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 libjsoncpp-dev amd64 1.7.4-3 [85.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.3 MB in 0s (20.0 MB/s) 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Setting up libfreetype6:amd64 (2.8.1-0.1ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:amd64 (1:5.32-1) ... Setting up libgraphite2-3:amd64 (1.3.10-8) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20171216.1) ... Setting up libfml0 (0.1-4) ... Setting up libbwa-dev (0.7.17-1) ... Setting up liblzma-dev:amd64 (5.2.2-1.3) ... Setting up bsdmainutils (9.0.14ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libhts2:amd64 (1.6-3) ... Setting up libcurl4-openssl-dev:amd64 (7.57.0-1ubuntu1) ... Setting up autopoint (0.19.8.1-4ubuntu2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libjsoncpp-dev:amd64 (1.7.4-3) ... Setting up libhts-dev:amd64 (1.6-3) ... Setting up libharfbuzz0b:amd64 (1.7.2-1) ... Setting up libfml-dev (0.1-4) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-1) ... Setting up libhts-private-dev (1.6-3) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up libicu-le-hb0:amd64 (1.0.3+git161113-4) ... Setting up libicu60:amd64 (60.2-1ubuntu1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-5.2ubuntu1) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up gettext (0.19.8.1-4ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.20) ... Setting up debhelper (11ubuntu1) ... Setting up dh-autoreconf (15) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up sbuild-build-depends-libseqlib-dummy (0.invalid.0) ... (Reading database ... 14788 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic amd64 (x86_64) Toolchain package versions: binutils_2.29.1-12ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-18ubuntu2 gcc-7_7.2.0-18ubuntu2 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-18ubuntu2 libstdc++6_7.2.0-18ubuntu2 linux-libc-dev_4.14.0-13.15 Package versions: adduser_3.116ubuntu1 advancecomp_2.0-1 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu2 autotools-dev_20171216.1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-12ubuntu1 binutils-common_2.29.1-12ubuntu1 binutils-x86-64-linux-gnu_2.29.1-12ubuntu1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-18ubuntu2 d-shlibs_0.81 dash_0.5.8-2.3ubuntu1 debconf_1.5.65 debhelper_11ubuntu1 debianutils_4.8.3 dh-autoreconf_15 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.2-0.1ubuntu1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-18ubuntu2 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-18ubuntu2 gcc-7-base_7.2.0-18ubuntu2 gettext_0.19.8.1-4ubuntu2 gettext-base_0.19.8.1-4ubuntu2 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-18ubuntu2 libasn1-8-heimdal_7.5.0+dfsg-1 libassuan0_2.5.1-1 libatomic1_7.2.0-18ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbinutils_2.29.1-12ubuntu1 libblkid1_2.30.2-0.1ubuntu1 libbsd0_0.8.6-3 libbwa-dev_0.7.17-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-18ubuntu2 libcilkrts5_7.2.0-18ubuntu2 libcomerr2_1.43.7-1 libcroco3_0.6.12-2 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3_7.57.0-1ubuntu1 libcurl3-gnutls_7.57.0-1ubuntu1 libcurl4-openssl-dev_7.57.0-1ubuntu1 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.2-0.1ubuntu1 libffi6_3.2.1-7 libfile-stripnondeterminism-perl_0.040-1 libfml-dev_0.1-4 libfml0_0.1-4 libfreetype6_2.8.1-0.1ubuntu2 libgcc-7-dev_7.2.0-18ubuntu2 libgcc1_1:7.2.0-18ubuntu2 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libglib2.0-0_2.54.1-1ubuntu1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-18ubuntu2 libgpg-error0_1.27-5 libgraphite2-3_1.3.10-8 libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.5.0+dfsg-1 libharfbuzz0b_1.7.2-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhts-dev_1.6-3 libhts-private-dev_1.6-3 libhts2_1.6-3 libhx509-5-heimdal_7.5.0+dfsg-1 libicu-le-hb0_1.0.3+git161113-4 libicu60_60.2-1ubuntu1 libidn11_1.33-2.1 libidn2-0_2.0.4-1 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-1 libitm1_7.2.0-18ubuntu2 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_7.2.0-18ubuntu2 liblz4-1_0.0~r131-2ubuntu2 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1ubuntu1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmpx2_7.2.0-18ubuntu2 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.28.0-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-8 libperl5.26_5.26.1-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.19.1-4 libquadmath0_7.2.0-18ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.2-0.1ubuntu1 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu15 libssw-dev_1.1-1 libssw0_1.1-1 libstdc++-7-dev_7.2.0-18ubuntu2 libstdc++6_7.2.0-18ubuntu2 libsystemd0_235-3ubuntu3 libtasn1-6_4.12-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-18ubuntu2 libubsan0_7.2.0-18ubuntu2 libudev1_235-3ubuntu3 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1ubuntu1 libwind0-heimdal_7.5.0+dfsg-1 libxml2_2.9.4+dfsg1-5.2ubuntu1 linux-libc-dev_4.14.0-13.15 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-4 mawk_1.3.3-17ubuntu2 mount_2.30.2-0.1ubuntu1 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu15 optipng_0.7.6-1.1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libseqlib-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_235-3ubuntu3 systemd-sysv_235-3ubuntu3 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.2-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Dec 10 16:02:01 2017 UTC gpgv: using RSA key gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libseqlib_1.1.1+dfsg-3.dsc dpkg-source: info: extracting libseqlib in libseqlib-1.1.1+dfsg dpkg-source: info: unpacking libseqlib_1.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking libseqlib_1.1.1+dfsg-3.debian.tar.xz dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying adapt_to_debian_fermi-lite.patch dpkg-source: info: applying fix_fermi-lite_usage.patch dpkg-source: info: applying fix_htslib_usage.patch dpkg-source: info: applying fml_include_path.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying use_debian_packaged_jsoncpp.patch dpkg-source: info: applying use_debian_packaged_ssw.patch dpkg-source: info: applying pkg-config.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13839779 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13839779 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13839779 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libseqlib dpkg-buildpackage: info: source version 1.1.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build libseqlib-1.1.1+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:17: installing './compile' configure.ac:19: installing './config.guess' configure.ac:19: installing './config.sub' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... 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-DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/x86_64-linux-gnu libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo -lz -pthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lz -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libseqlib.so.0 -o .libs/libseqlib.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libseqlib.so.0" && ln -s "libseqlib.so.0.0.0" "libseqlib.so.0") libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.0.0.0" "libseqlib.so") libtool: link: ar cru .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libseqlib.a libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" ) make[3]: Leaving directory '/<>/libseqlib-1.1.1+dfsg/src' make[3]: Entering directory '/<>/libseqlib-1.1.1+dfsg' make[3]: Leaving directory '/<>/libseqlib-1.1.1+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.1+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.1+dfsg' dh_auto_test make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libseqlib-1.1.1+dfsg' Making check in src make[2]: Entering directory '/<>/libseqlib-1.1.1+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libseqlib-1.1.1+dfsg/src' make[2]: Entering directory '/<>/libseqlib-1.1.1+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.1+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.1+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/<>/libseqlib-1.1.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libseqlib-1.1.1+dfsg' echo "mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin" mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin make[1]: Leaving directory '/<>/libseqlib-1.1.1+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/libseqlib-1.1.1+dfsg' dh_install # Trick to get also headers moved by d-shlibmove cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/SeqLib usr/include \ src/.libs/libseqlib.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libseqlib-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libseqlib0/usr/lib/x86_64-linux-gnu mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/x86_64-linux-gnu mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/x86_64-linux-gnu mv /<>/libseqlib-1.1.1+dfsg/src/.libs/libseqlib.so.0 debian/libseqlib0/usr/lib/x86_64-linux-gnu mv /<>/libseqlib-1.1.1+dfsg/src/.libs/libseqlib.so.0.0.0 debian/libseqlib0/usr/lib/x86_64-linux-gnu PKGDEV=libseqlib-dev PKGSHL=libseqlib0 install -d -m 755 debian/libseqlib-dev/usr/include mv debian/SeqLib debian/libseqlib-dev/usr/include mkdir -p /<>/libseqlib-1.1.1+dfsg/debian/libseqlib-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv libseqlib.pc /<>/libseqlib-1.1.1+dfsg/debian/libseqlib-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/<>/libseqlib-1.1.1+dfsg' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: symbol hts_close used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_gen_cnt_table used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNK4Json5Value3getERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS0_ used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4Json18ValueConstIteratorC1ERKNS_13ValueIteratorE used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol kmer_correct used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol kseq_read used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sam_read1 used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sam_index_build used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sam_hdr_write used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bns_dump used by debian/libseqlib0/usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: 85 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libseqlib-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: package libseqlib-dev: unused substitution variable ${devlibs:Depends} dh_md5sums dh_builddeb INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libseqlib-dev (in debian/libseqlib-dev); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib0 (in debian/libseqlib0); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib0-dbgsym (in debian/.debhelper/libseqlib0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libseqlib-dev/DEBIAN/control, package libseqlib-dev, directory debian/libseqlib-dev pkgstripfiles: processing control file: debian/libseqlib0/DEBIAN/control, package libseqlib0, directory debian/libseqlib0 INFO: pkgstripfiles: waiting for lock (libseqlib-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib0' in '../libseqlib0_1.1.1+dfsg-3_amd64.deb'. Searching for duplicated docs in dependency libseqlib0... symlinking changelog.Debian.gz in libseqlib-dev to file in libseqlib0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.1.1+dfsg-3_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libseqlib0/dbgsym-root/DEBIAN/control, package libseqlib0-dbgsym, directory debian/.debhelper/libseqlib0/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib0-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib0-dbgsym' in 'debian/.debhelper/scratch-space/build-libseqlib0/libseqlib0-dbgsym_1.1.1+dfsg-3_amd64.deb'. Renaming libseqlib0-dbgsym_1.1.1+dfsg-3_amd64.deb to libseqlib0-dbgsym_1.1.1+dfsg-3_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../libseqlib_1.1.1+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build libseqlib-1.1.1+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171221-0625 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libseqlib_1.1.1+dfsg-3_amd64.changes: ------------------------------------- Format: 1.8 Date: Sun, 10 Dec 2017 14:24:34 +0100 Source: libseqlib Binary: libseqlib0 libseqlib-dev Architecture: amd64 Version: 1.1.1+dfsg-3 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat libseqlib0 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat Changes: libseqlib (1.1.1+dfsg-3) unstable; urgency=medium . * Remove liblzma-dev again since it is only used for dist target * Build-Depends: libhts-private-dev since libhts-dev does not provide private cran headers any more (see bug #881170) * Explicitly use -I/usr/include/htslib instead of pkg-config in libhts-dev since upstream insisted that the cram headers are private (see bug #881359) * d/rules: do not parse d/changelog * Standards-Version: 4.1.2 Checksums-Sha1: 5db48c208d23847e3d9517e977ecf7936b408cf8 165220 libseqlib-dev_1.1.1+dfsg-3_amd64.deb 5bf0a94f2b6a4b8bd0002a6b76a7238bb0d004d8 1298632 libseqlib0-dbgsym_1.1.1+dfsg-3_amd64.ddeb 97eb3615f41f8e49e44271e438a9690ea8490856 114068 libseqlib0_1.1.1+dfsg-3_amd64.deb 2a57bc799b7e1cfa705270a6fd82809bef0e0f93 7249 libseqlib_1.1.1+dfsg-3_amd64.buildinfo Checksums-Sha256: ddc4dfbf244818cf62d70b541e078f034f1dcbd52c9fea2a95759ef576e4bd82 165220 libseqlib-dev_1.1.1+dfsg-3_amd64.deb f394ac7d69e1f58ca994a29e416ace24cb30270eaeb7a1a3d21e54a815364ad0 1298632 libseqlib0-dbgsym_1.1.1+dfsg-3_amd64.ddeb 81bd4b35ff765c57af33f7c4bcefd984c4adfe05fb7c88b1e9b1df9be6efe082 114068 libseqlib0_1.1.1+dfsg-3_amd64.deb 027afa8cf1cba936bf4bf1477c925970f5cdd2b60aeac447d4e989e3d9b5b7ed 7249 libseqlib_1.1.1+dfsg-3_amd64.buildinfo Files: 7045462533d6f6e531043e975671bddd 165220 libdevel optional libseqlib-dev_1.1.1+dfsg-3_amd64.deb 70eac3519539d76d55cfced78c50db2f 1298632 debug optional libseqlib0-dbgsym_1.1.1+dfsg-3_amd64.ddeb ca8bfd26b5ac695267ce9dd745391d6c 114068 libs optional libseqlib0_1.1.1+dfsg-3_amd64.deb f014882c5d99a46f5fa034e6e2d11141 7249 science optional libseqlib_1.1.1+dfsg-3_amd64.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libseqlib-dev_1.1.1+dfsg-3_amd64.deb ------------------------------------ new debian package, version 2.0. size 165220 bytes: control archive=1712 bytes. 1384 bytes, 25 lines control 1581 bytes, 23 lines md5sums Package: libseqlib-dev Source: libseqlib Version: 1.1.1+dfsg-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 900 Depends: libseqlib0 (= 1.1.1+dfsg-3), libhts-dev (>= 1.3.2-3), libjsoncpp-dev, libbwa-dev, libfml-dev Section: libdevel Priority: optional Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev) C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. . This package contains the header files and static library. drwxr-xr-x root/root 0 2017-12-10 13:24 ./ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/include/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/include/SeqLib/ -rw-r--r-- root/root 4449 2017-12-10 13:24 ./usr/include/SeqLib/BFC.h -rw-r--r-- root/root 6285 2016-11-25 19:53 ./usr/include/SeqLib/BWAWrapper.h -rw-r--r-- root/root 3605 2017-12-10 13:24 ./usr/include/SeqLib/BamHeader.h -rw-r--r-- root/root 8435 2016-11-25 19:53 ./usr/include/SeqLib/BamReader.h -rw-r--r-- root/root 30359 2017-12-10 13:24 ./usr/include/SeqLib/BamRecord.h -rw-r--r-- root/root 2058 2016-11-25 19:53 ./usr/include/SeqLib/BamWalker.h -rw-r--r-- root/root 3096 2016-11-25 19:53 ./usr/include/SeqLib/BamWriter.h -rw-r--r-- root/root 1139 2016-11-25 19:53 ./usr/include/SeqLib/FastqReader.h -rw-r--r-- root/root 4022 2017-12-10 13:24 ./usr/include/SeqLib/FermiAssembler.h -rw-r--r-- root/root 6129 2016-11-25 19:53 ./usr/include/SeqLib/GenomicRegion.h -rw-r--r-- root/root 19701 2016-11-25 19:53 ./usr/include/SeqLib/GenomicRegionCollection.cpp -rw-r--r-- root/root 11804 2016-11-25 19:53 ./usr/include/SeqLib/GenomicRegionCollection.h -rw-r--r-- root/root 7320 2016-11-25 19:53 ./usr/include/SeqLib/IntervalTree.h -rw-r--r-- root/root 17397 2016-11-25 19:53 ./usr/include/SeqLib/ReadFilter.h -rw-r--r-- root/root 1387 2017-12-10 13:24 ./usr/include/SeqLib/RefGenome.h -rw-r--r-- root/root 3832 2016-11-25 19:53 ./usr/include/SeqLib/SeqLibCommon.h -rw-r--r-- root/root 4170 2016-11-25 19:53 ./usr/include/SeqLib/SeqLibUtils.h -rw-r--r-- root/root 2455 2016-11-25 19:53 ./usr/include/SeqLib/SeqPlot.h -rw-r--r-- root/root 1925 2016-11-25 19:53 ./usr/include/SeqLib/UnalignedSequence.h -rw-r--r-- root/root 17078 2016-11-25 19:53 ./usr/include/SeqLib/aho_corasick.hpp drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 735560 2017-12-10 13:24 ./usr/lib/x86_64-linux-gnu/libseqlib.a lrwxrwxrwx root/root 0 2017-12-10 13:24 ./usr/lib/x86_64-linux-gnu/libseqlib.so -> libseqlib.so.0.0.0 drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 276 2017-12-10 13:24 ./usr/lib/x86_64-linux-gnu/pkgconfig/libseqlib.pc drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/share/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/share/doc/libseqlib-dev/ lrwxrwxrwx root/root 0 2017-12-10 13:24 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz -> ../libseqlib0/changelog.Debian.gz -rw-r--r-- root/root 2441 2017-12-10 13:24 ./usr/share/doc/libseqlib-dev/copyright libseqlib0_1.1.1+dfsg-3_amd64.deb --------------------------------- new debian package, version 2.0. size 114068 bytes: control archive=1204 bytes. 1293 bytes, 23 lines control 226 bytes, 3 lines md5sums 23 bytes, 1 lines shlibs 70 bytes, 2 lines triggers Package: libseqlib0 Source: libseqlib Version: 1.1.1+dfsg-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 338 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. drwxr-xr-x root/root 0 2017-12-10 13:24 ./ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2017-12-10 13:24 ./usr/lib/x86_64-linux-gnu/libseqlib.so.0 -> libseqlib.so.0.0.0 -rw-r--r-- root/root 329736 2017-12-10 13:24 ./usr/lib/x86_64-linux-gnu/libseqlib.so.0.0.0 drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/share/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-10 13:24 ./usr/share/doc/libseqlib0/ -rw-r--r-- root/root 468 2017-12-10 13:24 ./usr/share/doc/libseqlib0/changelog.Debian.gz -rw-r--r-- root/root 2441 2017-12-10 13:24 ./usr/share/doc/libseqlib0/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 31520 Build-Time: 38 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 11 Job: libseqlib_1.1.1+dfsg-3.dsc Machine Architecture: amd64 Package: libseqlib Package-Time: 51 Source-Version: 1.1.1+dfsg-3 Space: 31520 Status: successful Version: 1.1.1+dfsg-3 -------------------------------------------------------------------------------- Finished at 20171221-0625 Build needed 00:00:51, 31520k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13839779 Scanning for processes to kill in build PACKAGEBUILD-13839779 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13839779 Stopping target for build PACKAGEBUILD-13839779 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13839779 Removing build PACKAGEBUILD-13839779