https://launchpad.net/ubuntu/+source/libseqlib/1.1.2+dfsg-6/+build/18712205 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-043 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 15 Feb 23:12:42 ntpdate[1911]: adjust time server 10.211.37.1 offset 0.007212 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18712205 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18712205 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18712205 Starting target for build PACKAGEBUILD-18712205 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18712205 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18712205 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18712205 Updating target for build PACKAGEBUILD-18712205 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [960 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8372 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5153 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [96.1 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [45.8 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [351 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [245 kB] Fetched 16.4 MB in 10s (1699 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base procps sensible-utils systemd systemd-sysv sysvinit-utils ubuntu-keyring util-linux 107 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 57.2 MB of archives. After this operation, 37.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf linux-libc-dev armhf 5.4.0-14.17 [1115 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf gcc-10-base armhf 10-20200211-1ubuntu1 [18.8 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-s1 armhf 10-20200211-1ubuntu1 [36.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libgcc1 armhf 1:10-20200211-1ubuntu1 [36.4 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-5ubuntu1 [576 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main armhf bsdutils armhf 1:2.34-0.1ubuntu6 [58.2 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf grep armhf 3.4-1 [141 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main armhf login armhf 1:4.8.1-1ubuntu1 [217 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.1+20191019-1ubuntu1 [163 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libblkid1 armhf 2.34-0.1ubuntu6 [124 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libuuid1 armhf 2.34-0.1ubuntu6 [19.6 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libfdisk1 armhf 2.34-0.1ubuntu6 [163 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libselinux1 armhf 3.0-1 [60.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libmount1 armhf 2.34-0.1ubuntu6 [135 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.1+20191019-1ubuntu1 [79.7 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.1+20191019-1ubuntu1 [72.8 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.1+20191019-1ubuntu1 [106 kB] Get:32 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsmartcols1 armhf 2.34-0.1ubuntu6 [88.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal-proposed/main armhf fdisk armhf 2.34-0.1ubuntu6 [109 kB] Get:34 http://ftpmaster.internal/ubuntu focal-proposed/main armhf util-linux armhf 2.34-0.1ubuntu6 [958 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libdebconfclient0 armhf 0.251ubuntu1 [5592 B] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.30-0ubuntu3 [496 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-2.1ubuntu1 [19.1 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libgpg-error0 armhf 1.37-1 [50.0 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++6 armhf 10-20200211-1ubuntu1 [440 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf systemd-sysv armhf 244.2-1ubuntu1 [9368 B] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu1 [29.4 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf libcap-ng0 armhf 0.7.9-2.1build1 [9688 B] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu5 [35.9 kB] Get:51 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcap2 armhf 1:2.31-1 [14.1 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf libudev1 armhf 244.2-1ubuntu1 [69.6 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu1 [118 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-6 [25.6 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libssl1.1 armhf 1.1.1d-2ubuntu3 [1080 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-3ubuntu1 [163 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgmp10 armhf 2:6.2.0+dfsg-3 [192 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libffi7 armhf 3.3-3 [16.5 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.20-1build1 [167 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.15.0-2 [33.0 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2ubuntu2 [733 kB] Get:64 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libip4tc2 armhf 1.8.4-3ubuntu1 [16.8 kB] Get:65 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libkmod2 armhf 26+20191223-1ubuntu1 [38.4 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libseccomp2 armhf 2.4.2-2ubuntu2 [32.5 kB] Get:68 http://ftpmaster.internal/ubuntu focal-proposed/main armhf mount armhf 2.34-0.1ubuntu6 [108 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf systemd armhf 244.2-1ubuntu1 [3535 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libsystemd0 armhf 244.2-1ubuntu1 [241 kB] Get:71 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libzstd1 armhf 1.4.4+dfsg-3 [207 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.9 [776 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 1.9.9 [1236 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:78 http://ftpmaster.internal/ubuntu focal-proposed/main armhf logsave armhf 1.45.5-2ubuntu1 [9568 B] Get:79 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libext2fs2 armhf 1.45.5-2ubuntu1 [170 kB] Get:80 http://ftpmaster.internal/ubuntu focal-proposed/main armhf e2fsprogs armhf 1.45.5-2ubuntu1 [508 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage-common all 3.0-1 [9880 B] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage1 armhf 3.0-1 [73.9 kB] Get:86 http://ftpmaster.internal/ubuntu focal-proposed/main armhf passwd armhf 1:4.8.1-1ubuntu1 [749 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf libgomp1 armhf 10-20200211-1ubuntu1 [86.5 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libatomic1 armhf 10-20200211-1ubuntu1 [7244 B] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libasan5 armhf 9.2.1-28ubuntu1 [387 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libubsan1 armhf 10-20200211-1ubuntu1 [121 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf g++-9 armhf 9.2.1-28ubuntu1 [6681 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9 armhf 9.2.1-28ubuntu1 [6537 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++-9-dev armhf 9.2.1-28ubuntu1 [1779 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-9-dev armhf 9.2.1-28ubuntu1 [690 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22-2 [460 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf libcc1-0 armhf 10-20200211-1ubuntu1 [34.3 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.34-1ubuntu1 [2093 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.34-1ubuntu1 [319 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main armhf binutils armhf 2.34-1ubuntu1 [3368 B] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf binutils-common armhf 2.34-1ubuntu1 [206 kB] Get:101 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3.31.1-1ubuntu1 [467 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main armhf openssl armhf 1.1.1d-2ubuntu3 [595 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main armhf libpng16-16 armhf 1.6.37-2 [162 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main armhf libassuan0 armhf 2.5.3-7ubuntu2 [29.1 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.2 MB in 11s (5421 kB/s) (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_armhf.deb ... Unpacking libc6-dev:armhf (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_armhf.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-14.17_armhf.deb ... Unpacking linux-libc-dev:armhf (5.4.0-14.17) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:armhf. Preparing to unpack .../gcc-10-base_10-20200211-1ubuntu1_armhf.deb ... Unpacking gcc-10-base:armhf (10-20200211-1ubuntu1) ... Setting up gcc-10-base:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package libgcc-s1:armhf. (Reading database ... 12497 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (10-20200211-1ubuntu1) ... Replacing files in old package libgcc1:armhf (1:9.2.1-9ubuntu2) ... 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Unpacking liblockfile1:armhf (1.16-1.1) over (1.15-1) ... Setting up libip4tc2:armhf (1.8.4-3ubuntu1) ... Setting up libapparmor1:armhf (2.13.3-7ubuntu1) ... Setting up liblockfile-bin (1.16-1.1) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libssl1.1:armhf (1.1.1d-2ubuntu3) ... Setting up libsqlite3-0:armhf (3.31.1-1ubuntu1) ... Setting up binutils-common:armhf (2.34-1ubuntu1) ... Setting up linux-libc-dev:armhf (5.4.0-14.17) ... Setting up libctf-nobfd0:armhf (2.34-1ubuntu1) ... Setting up libcom-err2:armhf (1.45.5-2ubuntu1) ... Setting up libassuan0:armhf (2.5.3-7ubuntu2) ... Setting up libgomp1:armhf (10-20200211-1ubuntu1) ... Setting up bzip2 (1.0.8-2) ... Setting up libcap2:armhf (1:2.31-1) ... Setting up libncurses6:armhf (6.1+20191019-1ubuntu1) ... Setting up libpng16-16:armhf (1.6.37-2) ... Setting up libatomic1:armhf (10-20200211-1ubuntu1) ... Setting up libss2:armhf (1.45.5-2ubuntu1) ... Setting up logsave (1.45.5-2ubuntu1) ... Setting up libubsan1:armhf (10-20200211-1ubuntu1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.167-1ubuntu1) ... Setting up mount (2.34-0.1ubuntu6) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:armhf (5.30.0-9) ... Setting up libisl22:armhf (0.22-2) ... Setting up liblockfile1:armhf (1.16-1.1) ... Setting up libjson-c4:armhf (0.13.1+dfsg-6) ... Setting up libbinutils:armhf (2.34-1ubuntu1) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up openssl (1.1.1d-2ubuntu3) ... Setting up libcc1-0:armhf (10-20200211-1ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up libprocps8:armhf (2:3.3.16-1ubuntu1) ... Setting up libkmod2:armhf (26+20191223-1ubuntu1) ... Setting up gcc-9-base:armhf (9.2.1-28ubuntu1) ... Setting up libctf0:armhf (2.34-1ubuntu1) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up e2fsprogs (1.45.5-2ubuntu1) ... Setting up libasan5:armhf (9.2.1-28ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up procps (2:3.3.16-1ubuntu1) ... Removing obsolete conffile /etc/sysctl.d/protect-links.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up cpp-9 (9.2.1-28ubuntu1) ... Setting up libc6-dev:armhf (2.30-0ubuntu3) ... Setting up libcryptsetup12:armhf (2:2.2.2-3ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.34-1ubuntu1) ... Setting up systemd (244.2-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-1ubuntu1) ... Setting up libgcc-9-dev:armhf (9.2.1-28ubuntu1) ... Setting up gcc-9 (9.2.1-28ubuntu1) ... Setting up systemd-sysv (244.2-1ubuntu1) ... Setting up libstdc++-9-dev:armhf (9.2.1-28ubuntu1) ... Setting up g++-9 (9.2.1-28ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18712205 armhf focal-proposed -c chroot:build-PACKAGEBUILD-18712205 --arch=armhf --dist=focal-proposed --nolog libseqlib_1.1.2+dfsg-6.dsc Initiating build PACKAGEBUILD-18712205 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-043.buildd +==============================================================================+ | libseqlib 1.1.2+dfsg-6 (armhf) 15 Feb 2020 23:13 | +==============================================================================+ Package: libseqlib Version: 1.1.2+dfsg-6 Source Version: 1.1.2+dfsg-6 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/libseqlib-CXy0WV/libseqlib-1.1.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-CXy0WV' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18712205/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libseqlib_1.1.2+dfsg-6.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-zEgHla/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-zEgHla/apt_archive ./ InRelease Get:2 copy:/<>/resolver-zEgHla/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-zEgHla/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-zEgHla/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-zEgHla/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (82.9 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-zEgHla/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (67.4 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14419 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-openssl-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-openssl-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev dpkg-deb: building package 'sbuild-build-depends-libseqlib-dummy' in '/<>/resolver-8Wbiy8/apt_archive/sbuild-build-depends-libseqlib-dummy.deb'. Ign:1 copy:/<>/resolver-8Wbiy8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8Wbiy8/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-8Wbiy8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8Wbiy8/apt_archive ./ Sources [300 B] Get:5 copy:/<>/resolver-8Wbiy8/apt_archive ./ Packages [622 B] Fetched 3041 B in 0s (90.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libseqlib build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism diffstat dwz file gettext gettext-base groff-base intltool-debian libapt-pkg-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libbsd0 libbwa-dev libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcroco3 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libelf1 libemail-valid-perl libexpat1 libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-stripnondeterminism-perl libfml-dev libfml0 libfont-ttf-perl libfuture-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhts-dev libhts3 libhx509-5-heimdal libicu65 libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libipc-system-simple-perl libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblzma-dev libmagic-mgc libmagic1 libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmpdec2 libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libpipeline1 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssw-dev libssw0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-override-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtool libtry-tiny-perl libtype-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwind0-heimdal libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libyaml-0-2 libyaml-libyaml-perl lintian m4 man-db mime-support netbase patchutils perl-openssl-defaults pkg-config pkg-kde-tools po-debconf python3 python3-minimal python3.8 python3.8-minimal t1utils ucf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libssl-dev libxml-parser-perl krb5-doc krb5-user libdata-dump-perl liblzma-doc libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl m4-doc apparmor less www-browser cdbs libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support Recommended packages: curl | wget | lynx libcgi-fast-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl krb5-locales libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl publicsuffix libsasl2-modules libltdl-dev libref-util-perl libtype-tiny-xs-perl libwww-perl libxml-sax-expat-perl libperlio-gzip-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism diffstat dwz file gettext gettext-base groff-base intltool-debian libapt-pkg-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libbsd0 libbwa-dev libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcroco3 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libelf1 libemail-valid-perl libexpat1 libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-stripnondeterminism-perl libfml-dev libfml0 libfont-ttf-perl libfuture-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhts-dev libhts3 libhx509-5-heimdal libicu65 libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libipc-system-simple-perl libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblzma-dev libmagic-mgc libmagic1 libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmpdec2 libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libpipeline1 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssw-dev libssw0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-override-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtool libtry-tiny-perl libtype-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwind0-heimdal libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libyaml-0-2 libyaml-libyaml-perl lintian m4 man-db mime-support netbase patchutils perl-openssl-defaults pkg-config pkg-kde-tools po-debconf python3 python3-minimal python3.8 python3.8-minimal sbuild-build-depends-libseqlib-dummy t1utils ucf zlib1g-dev 0 upgraded, 160 newly installed, 0 to remove and 0 not upgraded. Need to get 30.1 MB of archives. After this operation, 108 MB of additional disk space will be used. Get:1 copy:/<>/resolver-8Wbiy8/apt_archive ./ sbuild-build-depends-libseqlib-dummy 0.invalid.0 [948 B] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.8-minimal armhf 3.8.2~rc1-1ubuntu1 [697 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf libexpat1 armhf 2.2.9-1 [53.2 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf python3.8-minimal armhf 3.8.2~rc1-1ubuntu1 [1578 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf python3-minimal armhf 3.8.0-3 [23.4 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libmpdec2 armhf 2.4.2-2 [66.4 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf libpython3.8-stdlib armhf 3.8.2~rc1-1ubuntu1 [1613 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf python3.8 armhf 3.8.2~rc1-1ubuntu1 [363 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf libpython3-stdlib armhf 3.8.0-3 [6904 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0.176-1.1build1 [41.3 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libglib2.0-0 armhf 2.63.3-3 [1117 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libicu65 armhf 65.1-1ubuntu1 [8208 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libxml2 armhf 2.9.4+dfsg1-8ubuntu4 [554 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libyaml-0-2 armhf 0.2.2-1 [41.3 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf netbase all 6.0 [13.2 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf ucf all 3.0038+nmu1 [51.6 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10 [46.2 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5support0 armhf 1.17-6ubuntu4 [28.0 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libk5crypto3 armhf 1.17-6ubuntu4 [79.4 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libkeyutils1 armhf 1.6-6ubuntu1 [9172 B] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-3 armhf 1.17-6ubuntu4 [287 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi-krb5-2 armhf 1.17-6ubuntu4 [101 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf libpsl5 armhf 0.20.2-2 [48.7 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11.1 [321 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf automake all 1:1.16.1-4ubuntu6 [522 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10 [412 kB] Get:41 http://ftpmaster.internal/ubuntu focal/universe armhf d-shlibs all 0.88ubuntu2 [10.4 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-12 [195 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libdebhelper-perl all 12.9ubuntu1 [62.0 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-1 [90.4 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf dwz armhf 0.13-5 [153 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf gettext armhf 0.19.8.1-10 [836 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf debhelper all 12.9ubuntu1 [869 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf diffstat armhf 1.63-1 [25.1 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg-perl armhf 0.1.36build1 [63.7 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libroken18-heimdal armhf 7.7.0+dfsg-1 [34.7 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-1 [140 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libb-hooks-op-check-perl armhf 0.22-1build2 [9792 B] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libdynaloader-functions-perl all 0.003-1 [11.9 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libdevel-callchecker-perl armhf 0.008-1build1 [14.1 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libparams-classify-perl armhf 0.015-1build2 [19.8 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libtry-tiny-perl all 0.30-1 [20.5 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libmodule-implementation-perl all 0.09-1 [12.2 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libvariable-magic-perl armhf 0.62-1build2 [31.9 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libberkeleydb-perl armhf 0.62-1build1 [104 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libbrotli1 armhf 1.0.7-6 [268 kB] Get:71 http://ftpmaster.internal/ubuntu focal/universe armhf libbwa-dev armhf 0.7.17-4 [126 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libcapture-tiny-perl all 0.48-1 [20.4 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf libhtml-tagset-perl all 3.20-4 [12.5 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf liburi-perl all 1.76-2 [77.5 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf libhtml-parser-perl armhf 3.72-3build3 [82.6 kB] Get:76 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcgi-pm-perl all 4.46-1 [186 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libsub-name-perl armhf 0.26-1 [10.8 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libclass-accessor-perl all 0.51-1 [21.2 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf libclass-method-modifiers-perl all 2.13-1 [16.2 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf libclass-xsaccessor-perl armhf 1.19-3build3 [33.7 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf libclone-perl armhf 0.43-2 [10.2 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-1 [24.4 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-1 [78.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libwind0-heimdal armhf 7.7.0+dfsg-1 [46.9 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-1 [88.7 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-1 [170 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-1 [13.2 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-1 [80.0 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2 [13.4 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-2 armhf 2.1.27+dfsg-2 [42.7 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf libldap-common all 2.4.49+dfsg-1ubuntu1 [17.2 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf libldap-2.4-2 armhf 2.4.49+dfsg-1ubuntu1 [133 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf libnghttp2-14 armhf 1.40.0-1 [68.0 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build1 [49.1 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf libssh-4 armhf 0.9.3-2ubuntu1 [147 kB] Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcurl3-gnutls armhf 7.67.0-2ubuntu1 [199 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcurl4 armhf 7.67.0-2ubuntu1 [201 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcurl4-openssl-dev armhf 7.67.0-2ubuntu1 [292 kB] Get:99 http://ftpmaster.internal/ubuntu focal/universe armhf libdeflate0 armhf 1.5-3 [46.1 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] Get:101 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[11.1 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main armhf libfont-ttf-perl all 1.06-1 [313 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main armhf libfuture-perl all 0.43-1 [77.8 kB] Get:123 http://ftpmaster.internal/ubuntu focal/universe armhf libhts3 armhf 1.10.2-3 [307 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main armhf liblzma-dev armhf 5.2.4-1 [139 kB] Get:125 http://ftpmaster.internal/ubuntu focal/universe armhf libhts-dev armhf 1.10.2-3 [92.1 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main armhf libimport-into-perl all 1.002005-1 [11.0 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main armhf libstruct-dumb-perl all 0.09-1 [10.5 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main armhf libio-async-perl all 0.75-1 [254 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main armhf liblinux-epoll-perl armhf 0.017-1 [14.7 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main armhf libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main armhf libio-pty-perl armhf 1:1.12-1 [31.4 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main armhf libipc-run-perl all 20180523.0-2 [89.7 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main armhf liblist-compare-perl all 0.53-1 [65.6 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main armhf liblist-moreutils-perl armhf 0.416-1build5 [52.7 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main armhf libmldbm-perl all 2.05-2 [17.1 kB] Get:136 http://ftpmaster.internal/ubuntu focal/main armhf librole-tiny-perl all 2.001004-1 [16.5 kB] Get:137 http://ftpmaster.internal/ubuntu focal/main armhf libstrictures-perl all 2.000006-1 [16.3 kB] Get:138 http://ftpmaster.internal/ubuntu focal/main armhf libsub-quote-perl all 2.006006-1 [19.5 kB] Get:139 http://ftpmaster.internal/ubuntu focal/main armhf libmoo-perl all 2.003006-1 [46.3 kB] Get:140 http://ftpmaster.internal/ubuntu focal/main armhf libmoox-aliases-perl all 0.001006-1 [7176 B] 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[18.8 kB] Get:151 http://ftpmaster.internal/ubuntu focal/main armhf libxml-sax-perl all 1.02+dfsg-1 [56.2 kB] Get:152 http://ftpmaster.internal/ubuntu focal/main armhf libxml-libxml-perl armhf 2.0134+dfsg-1build1 [306 kB] Get:153 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libyaml-libyaml-perl armhf 0.81+repack-1 [26.1 kB] Get:154 http://ftpmaster.internal/ubuntu focal/main armhf patchutils armhf 0.3.4-2 [64.6 kB] Get:155 http://ftpmaster.internal/ubuntu focal/main armhf t1utils armhf 1.41-3 [48.2 kB] Get:156 http://ftpmaster.internal/ubuntu focal/main armhf lintian all 2.48.0 [1001 kB] Get:157 http://ftpmaster.internal/ubuntu focal/main armhf pkg-config armhf 0.29.1-0ubuntu4 [42.6 kB] Get:158 http://ftpmaster.internal/ubuntu focal/main armhf libjsoncpp1 armhf 1.7.4-3.1ubuntu1 [65.1 kB] Get:159 http://ftpmaster.internal/ubuntu focal/main armhf libjsoncpp-dev armhf 1.7.4-3.1ubuntu1 [83.0 kB] Get:160 http://ftpmaster.internal/ubuntu focal/universe armhf pkg-kde-tools all 0.15.31ubuntu1 [96.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.1 MB in 6s (5252 kB/s) Selecting previously unselected package libpython3.8-minimal:armhf. (Reading database ... 14419 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.2~rc1-1ubuntu1_armhf.deb ... Unpacking libpython3.8-minimal:armhf (3.8.2~rc1-1ubuntu1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.9-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.9-1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.2~rc1-1ubuntu1_armhf.deb ... Unpacking python3.8-minimal (3.8.2~rc1-1ubuntu1) ... Setting up libpython3.8-minimal:armhf (3.8.2~rc1-1ubuntu1) ... Setting up libexpat1:armhf (2.2.9-1) ... Setting up python3.8-minimal (3.8.2~rc1-1ubuntu1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14710 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.0-3_armhf.deb ... Unpacking python3-minimal (3.8.0-3) ... Selecting previously unselected package mime-support. 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Setting up python3-minimal (3.8.0-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Selecting previously unselected package python3. (Reading database ... 15112 files and directories currently installed.) Preparing to unpack .../000-python3_3.8.0-3_armhf.deb ... Unpacking python3 (3.8.0-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../001-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../002-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../003-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. 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Selecting previously unselected package pkg-config. Preparing to unpack .../146-pkg-config_0.29.1-0ubuntu4_armhf.deb ... Unpacking pkg-config (0.29.1-0ubuntu4) ... Selecting previously unselected package libjsoncpp1:armhf. Preparing to unpack .../147-libjsoncpp1_1.7.4-3.1ubuntu1_armhf.deb ... Unpacking libjsoncpp1:armhf (1.7.4-3.1ubuntu1) ... Selecting previously unselected package libjsoncpp-dev:armhf. Preparing to unpack .../148-libjsoncpp-dev_1.7.4-3.1ubuntu1_armhf.deb ... Unpacking libjsoncpp-dev:armhf (1.7.4-3.1ubuntu1) ... Selecting previously unselected package pkg-kde-tools. Preparing to unpack .../149-pkg-kde-tools_0.15.31ubuntu1_all.deb ... Unpacking pkg-kde-tools (0.15.31ubuntu1) ... Selecting previously unselected package sbuild-build-depends-libseqlib-dummy. Preparing to unpack .../150-sbuild-build-depends-libseqlib-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-libseqlib-dummy (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36build1) ... Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up libberkeleydb-perl:armhf (0.62-1build1) ... Setting up libkeyutils1:armhf (1.6-6ubuntu1) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up mime-support (3.64ubuntu1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.12-1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libclone-perl (0.43-2) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libyaml-0-2:armhf (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1build2) ... Setting up libglib2.0-0:armhf (2.63.3-3) ... No schema files found: doing nothing. Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdebhelper-perl (12.9ubuntu1) ... Setting up libbrotli1:armhf (1.0.7-6) ... Setting up libfuture-perl (0.43-1) ... Setting up libyaml-libyaml-perl (0.81+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libicu65:armhf (65.1-1ubuntu1) ... Setting up libnghttp2-14:armhf (1.40.0-1) ... Setting up libmagic1:armhf (1:5.38-4) ... Setting up libdeflate0 (1.5-3) ... Setting up perl-openssl-defaults:armhf (4) ... Setting up libmldbm-perl (2.05-2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-1ubuntu1) ... Setting up libfml0:armhf (0.1-9) ... Setting up libkrb5support0:armhf (1.17-6ubuntu4) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2) ... Setting up libio-async-perl (0.75-1) ... Setting up patchutils (0.3.4-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libipc-system-simple-perl (1.26-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up t1utils (1.41-3) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1build2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libb-hooks-op-check-perl (0.22-1build2) ... Setting up pkg-config (0.29.1-0ubuntu4) ... Setting up d-shlibs (0.88ubuntu2) ... Setting up libipc-run-perl (20180523.0-2) ... Setting up ucf (3.0038+nmu1) ... Setting up libk5crypto3:armhf (1.17-6ubuntu4) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libbwa-dev (0.7.17-4) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3100-1) ... Setting up liblzma-dev:armhf (5.2.4-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1ubuntu3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up netbase (6.0) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3build3) ... Setting up libkrb5-3:armhf (1.17-6ubuntu4) ... Setting up libmpdec2:armhf (2.4.2-2) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libpython3.8-stdlib:armhf (3.8.2~rc1-1ubuntu1) ... Setting up python3.8 (3.8.2~rc1-1ubuntu1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libssw0:armhf (1.1-7) ... Setting up libxml2:armhf (2.9.4+dfsg1-8ubuntu4) ... Setting up liburi-perl (1.76-2) ... Setting up libjsoncpp1:armhf (1.7.4-3.1ubuntu1) ... Setting up libpython3-stdlib:armhf (3.8.0-3) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libnet-ssleay-perl (1.88-2ubuntu1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libjsoncpp-dev:armhf (1.7.4-3.1ubuntu1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libfml-dev:armhf (0.1-9) ... Setting up libssw-dev:armhf (1.1-7) ... Setting up libtool (2.4.6-12) ... Setting up liblist-moreutils-perl (0.416-1build5) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libtype-tiny-perl (1.008001-2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.0-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libnet-dns-perl (1.21-1) ... Setting up libdevel-callchecker-perl (0.008-1build1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-6ubuntu4) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libssh-4:armhf (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1build1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libhtml-parser-perl (3.72-3build3) ... Setting up libio-socket-ssl-perl (2.066-0ubuntu4) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libparams-classify-perl (0.015-1build2) ... Setting up libcgi-pm-perl (4.46-1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003006-1) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libldap-2.4-2:armhf (2.4.49+dfsg-1ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.67.0-2ubuntu1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libcurl4:armhf (7.67.0-2ubuntu1) ... Setting up libhts3:armhf (1.10.2-3) ... Setting up libhts-dev:armhf (1.10.2-3) ... Setting up lintian (2.48.0) ... Setting up libcurl4-openssl-dev:armhf (7.67.0-2ubuntu1) ... Setting up pkg-kde-tools (0.15.31ubuntu1) ... Setting up debhelper (12.9ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-libseqlib-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-173-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-28ubuntu1 gcc-9_9.2.1-28ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 linux-libc-dev_5.4.0-14.17 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.9 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.34-1ubuntu1 binutils-arm-linux-gnueabihf_2.34-1ubuntu1 binutils-common_2.34-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu6 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-28ubuntu1 d-shlibs_0.88ubuntu2 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffstat_1.63-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu6 file_1:5.38-4 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-28ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200211-1ubuntu1 gcc-9_9.2.1-28ubuntu1 gcc-9-base_9.2.1-28ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg-perl_0.1.36build1 libapt-pkg5.90_1.9.9 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-28ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 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libsub-identify-perl_0.14-1build2 libsub-name-perl_0.26-1 libsub-override-perl_0.09-2 libsub-quote-perl_2.006006-1 libsystemd0_244.2-1ubuntu1 libtasn1-6_4.15.0-2 libtext-glob-perl_0.10-1 libtext-levenshtein-perl_0.13-1 libtimedate-perl_2.3100-1 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-12 libtry-tiny-perl_0.30-1 libtype-tiny-perl_1.008001-2 libubsan1_10-20200211-1ubuntu1 libuchardet0_0.0.6-3 libudev1_244.2-1ubuntu1 libunistring2_0.9.10-2 liburi-perl_1.76-2 libuuid1_2.34-0.1ubuntu6 libvariable-magic-perl_0.62-1build2 libwind0-heimdal_7.7.0+dfsg-1 libxml-libxml-perl_2.0134+dfsg-1build1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml2_2.9.4+dfsg1-8ubuntu4 libyaml-0-2_0.2.2-1 libyaml-libyaml-perl_0.81+repack-1 libzstd1_1.4.4+dfsg-3 lintian_2.48.0 linux-libc-dev_5.4.0-14.17 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu1 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu6 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 netbase_6.0 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu1 patch_2.7.6-6 patchutils_0.3.4-2 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 perl-openssl-defaults_4 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu4 pkg-kde-tools_0.15.31ubuntu1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu1 python3_3.8.0-3 python3-minimal_3.8.0-3 python3.8_3.8.2~rc1-1ubuntu1 python3.8-minimal_3.8.2~rc1-1ubuntu1 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libseqlib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244.2-1ubuntu1 systemd-sysv_244.2-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 t1utils_1.41-3 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2020.02.11.1 ucf_3.0038+nmu1 util-linux_2.34-0.1ubuntu6 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Feb 15 19:29:10 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libseqlib_1.1.2+dfsg-6.dsc dpkg-source: info: extracting libseqlib in libseqlib-1.1.2+dfsg dpkg-source: info: unpacking libseqlib_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking libseqlib_1.1.2+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying adapt_to_debian_fermi-lite.patch dpkg-source: info: applying fix_fermi-lite_usage.patch dpkg-source: info: applying fix_htslib_usage.patch dpkg-source: info: applying fml_include_path.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying use_debian_packaged_jsoncpp.patch dpkg-source: info: applying use_debian_packaged_ssw.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying fix_private_htslib_usage.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18712205 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18712205 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18712205 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libseqlib dpkg-buildpackage: info: source version 1.1.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with pkgkde_symbolshelper dh_clean debian/rules build-arch dh build-arch --with pkgkde_symbolshelper dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:17: installing './compile' configure.ac:19: installing './config.guess' configure.ac:19: installing './config.sub' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gzopen... -lz checking for library containing clock_gettime... none required checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for hts... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/seqtools/Makefile config.status: creating libseqlib.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make all-recursive make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg' Making all in src make[3]: Entering directory '/<>/libseqlib-1.1.2+dfsg/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-ReadFilter.lo `test -f 'ReadFilter.cpp' || echo './'`ReadFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-SeqPlot.lo `test -f 'SeqPlot.cpp' || echo './'`SeqPlot.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -fPIC -DPIC -o .libs/libseqlib_la-BFC.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-GenomicRegion.lo `test -f 'GenomicRegion.cpp' || echo './'`GenomicRegion.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-RefGenome.lo `test -f 'RefGenome.cpp' || echo './'`RefGenome.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -o libseqlib_la-RefGenome.o >/dev/null 2>&1 In file included from /usr/include/c++/9/vector:72, from ../SeqLib/ReadFilter.h:7, from ReadFilter.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SeqLib::Filter::AbstractRule&}; _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../SeqLib/ReadFilter.h:7, from ReadFilter.cpp:1: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void SeqLib::Filter::ReadFilter::AddRule(const SeqLib::Filter::AbstractRule&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamWriter.lo `test -f 'BamWriter.cpp' || echo './'`BamWriter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp /usr/include/c++/9/bits/stl_vector.h: In constructor ‘SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const string&, const SeqLib::BamHeader&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1 In file included from /usr/include/c++/9/vector:72, from ../SeqLib/BamRecord.h:6, from BamRecord.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -lfml `/usr/bin/pkg-config --libs htslib` `/usr/bin/pkg-config --libs jsoncpp` -lssw -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/arm-linux-gnueabihf libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo -lz -pthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/9/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lfml -lhts -ljsoncpp -lssw -lz -L/usr/lib/gcc/arm-linux-gnueabihf/9 -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/9/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libseqlib.so.1 -o .libs/libseqlib.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libseqlib.so.1" && ln -s "libseqlib.so.1.0.0" "libseqlib.so.1") libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.1.0.0" "libseqlib.so") libtool: link: ar cr .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o libtool: link: ranlib .libs/libseqlib.a libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" ) make[3]: Leaving directory '/<>/libseqlib-1.1.2+dfsg/src' make[3]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make[3]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' Making check in src make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg/src' make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with pkgkde_symbolshelper dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libseqlib-1.1.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' echo "mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin" mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' dh_install # Trick to get also headers moved by d-shlibmove cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/SeqLib usr/include \ --override s/libfml0-dev/libfml-dev/ \ --override s/libssw0-dev/libssw-dev/ \ src/.libs/libseqlib.so Library package automatic movement utility --> libfml-dev package exists. --> libhts-dev package exists. --> libjsoncpp-dev package exists. --> libssw-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libseqlib1/usr/lib/arm-linux-gnueabihf mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf mv /<>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1 debian/libseqlib1/usr/lib/arm-linux-gnueabihf mv /<>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1.0.0 debian/libseqlib1/usr/lib/arm-linux-gnueabihf PKGDEV=libseqlib-dev PKGSHL=libseqlib1 install -d -m 755 debian/libseqlib-dev/usr/include mv debian/SeqLib debian/libseqlib-dev/usr/include mkdir -p /<>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv libseqlib.pc /<>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol bwt_bwtupdate_core used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol err_fclose used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol kseq_init used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol is_bwt used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwa_fill_scmat used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_dump_sa used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol mem_align1 used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol nst_nt4_table used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_gen_cnt_table used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libseqlib-dev (in debian/libseqlib-dev); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib1 (in debian/libseqlib1); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib1-dbgsym (in debian/.debhelper/libseqlib1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libseqlib1/DEBIAN/control, package libseqlib1, directory debian/libseqlib1 pkgstripfiles: processing control file: debian/.debhelper/libseqlib1/dbgsym-root/DEBIAN/control, package libseqlib1-dbgsym, directory debian/.debhelper/libseqlib1/dbgsym-root dpkg-deb: building package 'libseqlib1-dbgsym' in 'debian/.debhelper/scratch-space/build-libseqlib1/libseqlib1-dbgsym_1.1.2+dfsg-6_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/libseqlib1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib1' in '../libseqlib1_1.1.2+dfsg-6_armhf.deb'. Renaming libseqlib1-dbgsym_1.1.2+dfsg-6_armhf.deb to libseqlib1-dbgsym_1.1.2+dfsg-6_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libseqlib-dev/DEBIAN/control, package libseqlib-dev, directory debian/libseqlib-dev Searching for duplicated docs in dependency libseqlib1... symlinking changelog.Debian.gz in libseqlib-dev to file in libseqlib1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.1.2+dfsg-6_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libseqlib_1.1.2+dfsg-6_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200215-2316 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libseqlib_1.1.2+dfsg-6_armhf.changes: ------------------------------------- Format: 1.8 Date: Sat, 15 Feb 2020 18:48:43 +0100 Source: libseqlib Binary: libseqlib-dev libseqlib1 Architecture: armhf Version: 1.1.2+dfsg-6 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat libseqlib1 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat Changes: libseqlib (1.1.2+dfsg-6) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Bug-Submit. * debian/control: use ${devlibs:Depends} for the -dev package * Properly link the shared library against libjsoncpp, libfml, ssw, & htslib * Modified use of pkg-config to be friendly for cross-building this package * Use pkg-kde-tools to manage the symbols Checksums-Sha1: 0666b432acee82525e25f287cdaf0158da57db06 163312 libseqlib-dev_1.1.2+dfsg-6_armhf.deb 5ee477bde677053ef5da4d71164f2dee2e4585c2 1617412 libseqlib1-dbgsym_1.1.2+dfsg-6_armhf.ddeb 437500526c239a5402d7f6adc676e55bc3fb9760 105596 libseqlib1_1.1.2+dfsg-6_armhf.deb f636b3fa6783e78e35b399d74973a7162883f2ff 10315 libseqlib_1.1.2+dfsg-6_armhf.buildinfo Checksums-Sha256: 032f09f06dd4ae03684f313c4cb3b7746147434e2f3c7599c80e99e29da42f64 163312 libseqlib-dev_1.1.2+dfsg-6_armhf.deb 00a09e8bc645fd1a20882acd8da6d30e6f9cb2600d9fbbddc69e7fc1297b38e3 1617412 libseqlib1-dbgsym_1.1.2+dfsg-6_armhf.ddeb 70445c1d2fd7d16ad61609e0fbd0f9ed436e5bd06b22f67f5f6a013850de8843 105596 libseqlib1_1.1.2+dfsg-6_armhf.deb 7ee079090353e1251f6df6cf9032bdfff541705e6a75809aab205208dfe50e86 10315 libseqlib_1.1.2+dfsg-6_armhf.buildinfo Files: b13f1f6198776c54eac6c120846dcdf6 163312 libdevel optional libseqlib-dev_1.1.2+dfsg-6_armhf.deb 431ebf5db81529dfefd74d33495ed06b 1617412 debug optional libseqlib1-dbgsym_1.1.2+dfsg-6_armhf.ddeb 3b4d0cbd139eb22e51741ae91c1fc0aa 105596 libs optional libseqlib1_1.1.2+dfsg-6_armhf.deb f216a03f0c206380fc0fc1895e9330d7 10315 science optional libseqlib_1.1.2+dfsg-6_armhf.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libseqlib-dev_1.1.2+dfsg-6_armhf.deb ------------------------------------ new debian package, version 2.0. size 163312 bytes: control archive=1752 bytes. 1395 bytes, 25 lines control 1663 bytes, 24 lines md5sums Package: libseqlib-dev Source: libseqlib Version: 1.1.2+dfsg-6 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 779 Depends: libseqlib1 (= 1.1.2+dfsg-6), libfml-dev, libhts-dev, libjsoncpp-dev, libssw-dev, zlib1g-dev, libbwa-dev Section: libdevel Priority: optional Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev) C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. . This package contains the header files and static library. drwxr-xr-x root/root 0 2020-02-15 17:48 ./ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/include/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/include/SeqLib/ -rw-r--r-- root/root 3874 2020-02-15 17:48 ./usr/include/SeqLib/BFC.h -rw-r--r-- root/root 6285 2017-05-12 20:31 ./usr/include/SeqLib/BWAWrapper.h -rw-r--r-- root/root 3605 2020-02-15 17:48 ./usr/include/SeqLib/BamHeader.h -rw-r--r-- root/root 8503 2017-05-12 20:31 ./usr/include/SeqLib/BamReader.h -rw-r--r-- root/root 31497 2020-02-15 17:48 ./usr/include/SeqLib/BamRecord.h -rw-r--r-- root/root 1979 2020-02-15 17:48 ./usr/include/SeqLib/BamWalker.h -rw-r--r-- root/root 3096 2017-05-12 20:31 ./usr/include/SeqLib/BamWriter.h -rw-r--r-- root/root 1139 2017-05-12 20:31 ./usr/include/SeqLib/FastqReader.h -rw-r--r-- root/root 4022 2020-02-15 17:48 ./usr/include/SeqLib/FermiAssembler.h -rw-r--r-- root/root 6129 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegion.h -rw-r--r-- root/root 19701 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegionCollection.cpp -rw-r--r-- root/root 11804 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegionCollection.h -rw-r--r-- root/root 7320 2017-05-12 20:31 ./usr/include/SeqLib/IntervalTree.h -rw-r--r-- root/root 17397 2017-05-12 20:31 ./usr/include/SeqLib/ReadFilter.h -rw-r--r-- root/root 1387 2020-02-15 17:48 ./usr/include/SeqLib/RefGenome.h -rw-r--r-- root/root 3832 2017-05-12 20:31 ./usr/include/SeqLib/SeqLibCommon.h -rw-r--r-- root/root 4176 2017-05-12 20:31 ./usr/include/SeqLib/SeqLibUtils.h -rw-r--r-- root/root 2455 2017-05-12 20:31 ./usr/include/SeqLib/SeqPlot.h -rw-r--r-- root/root 1932 2017-05-12 20:31 ./usr/include/SeqLib/UnalignedSequence.h -rw-r--r-- root/root 17078 2017-05-12 20:31 ./usr/include/SeqLib/aho_corasick.hpp drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 608728 2020-02-15 17:48 ./usr/lib/arm-linux-gnueabihf/libseqlib.a lrwxrwxrwx root/root 0 2020-02-15 17:48 ./usr/lib/arm-linux-gnueabihf/libseqlib.so -> libseqlib.so.1.0.0 drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 264 2020-02-15 17:48 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libseqlib.pc drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/share/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/share/doc/libseqlib-dev/ lrwxrwxrwx root/root 0 2020-02-15 17:48 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz -> ../libseqlib1/changelog.Debian.gz -rw-r--r-- root/root 2441 2020-02-15 14:21 ./usr/share/doc/libseqlib-dev/copyright drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 145 2020-02-15 16:39 ./usr/share/lintian/overrides/libseqlib-dev libseqlib1_1.1.2+dfsg-6_armhf.deb --------------------------------- new debian package, version 2.0. size 105596 bytes: control archive=5764 bytes. 1369 bytes, 23 lines control 229 bytes, 3 lines md5sums 39 bytes, 1 lines shlibs 44364 bytes, 441 lines symbols 72 bytes, 2 lines triggers Package: libseqlib1 Source: libseqlib Version: 1.1.2+dfsg-6 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 278 Depends: libc6 (>= 2.4), libfml0 (>= 0.1), libgcc-s1 (>= 3.5), libhts3 (>= 1.10), libjsoncpp1 (>= 1.7.4), libssw0 (>= 1.1), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. drwxr-xr-x root/root 0 2020-02-15 17:48 ./ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2020-02-15 17:48 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.1 -> libseqlib.so.1.0.0 -rw-r--r-- root/root 222628 2020-02-15 17:48 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/share/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-15 17:48 ./usr/share/doc/libseqlib1/ -rw-r--r-- root/root 1252 2020-02-15 17:48 ./usr/share/doc/libseqlib1/changelog.Debian.gz -rw-r--r-- root/root 2441 2020-02-15 14:21 ./usr/share/doc/libseqlib1/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 29760 Build-Time: 98 Distribution: focal-proposed Host Architecture: armhf Install-Time: 39 Job: libseqlib_1.1.2+dfsg-6.dsc Machine Architecture: arm64 Package: libseqlib Package-Time: 139 Source-Version: 1.1.2+dfsg-6 Space: 29760 Status: successful Version: 1.1.2+dfsg-6 -------------------------------------------------------------------------------- Finished at 20200215-2316 Build needed 00:02:19, 29760k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18712205 Scanning for processes to kill in build PACKAGEBUILD-18712205