https://launchpad.net/ubuntu/+source/libseqlib/1.1.2+dfsg-9ubuntu2/+build/20768850 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-018 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:57:27 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 5 Jan 11:03:03 ntpdate[1626]: adjust time server 10.211.37.1 offset -0.001058 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20768850 --image-type chroot /home/buildd/filecache-default/6663ab897c1b9684e4da3138ea2f806b3d40e7b1 Creating target for build PACKAGEBUILD-20768850 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20768850 Starting target for build PACKAGEBUILD-20768850 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20768850 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20768850 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20768850 Updating target for build PACKAGEBUILD-20768850 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main armhf Packages [1339 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe armhf Packages [12.4 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5390 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf Packages [157 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [63.1 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf Packages [704 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [343 kB] Fetched 21.5 MB in 8s (2626 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libisl23 libperl5.32 libxxhash0 perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libp11-kit0 libpcre2-8-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 101 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After this operation, 43.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt-dev armhf 1:4.4.17-1ubuntu1 [113 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc6-dev armhf 2.32-0ubuntu6 [1582 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc-dev-bin armhf 2.32-0ubuntu6 [29.6 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt1 armhf 1:4.4.17-1ubuntu1 [86.7 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf linux-libc-dev armhf 5.8.0-34.37+21.04.1 [1108 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc-common all 1.3.1-1 [7452 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf libk5crypto3 armhf 1.17-10ubuntu1 [75.2 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main armhf libgssapi-krb5-2 armhf 1.17-10ubuntu1 [100 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5-3 armhf 1.17-10ubuntu1 [286 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5support0 armhf 1.17-10ubuntu1 [27.8 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libssl1.1 armhf 1.1.1f-1ubuntu5 [1079 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc-dev armhf 1.3.1-1 [174 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc3 armhf 1.3.1-1 [65.6 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libisl23 armhf 0.23-1 [513 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libcc1-0 armhf 10.2.1-2ubuntu3 [41.9 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf0 armhf 2.35.50.20201218-1ubuntu3 [79.4 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf-nobfd0 armhf 2.35.50.20201218-1ubuntu3 [78.7 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.35.50.20201218-1ubuntu3 [2476 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libbinutils armhf 2.35.50.20201218-1ubuntu3 [416 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-common armhf 2.35.50.20201218-1ubuntu3 [216 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils armhf 2.35.50.20201218-1ubuntu3 [3376 B] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf gcc-10-base armhf 10.2.1-2ubuntu3 [19.3 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libgcc-s1 armhf 10.2.1-2ubuntu3 [36.2 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libgomp1 armhf 10.2.1-2ubuntu3 [87.2 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libatomic1 armhf 10.2.1-2ubuntu3 [7260 B] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libasan6 armhf 10.2.1-2ubuntu3 [2054 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libubsan1 armhf 10.2.1-2ubuntu3 [757 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf g++-10 armhf 10.2.1-2ubuntu3 [7613 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libstdc++-10-dev armhf 10.2.1-2ubuntu3 [1816 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libgcc-10-dev armhf 10.2.1-2ubuntu3 [716 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf gcc-10 armhf 10.2.1-2ubuntu3 [13.5 MB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf cpp-10 armhf 10.2.1-2ubuntu3 [6636 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libstdc++6 armhf 10.2.1-2ubuntu3 [441 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main armhf libmpc3 armhf 1.2.0-1 [36.1 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libzstd1 armhf 1.4.8+dfsg-1 [258 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc6 armhf 2.32-0ubuntu6 [2124 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main armhf base-files armhf 11ubuntu16 [60.2 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main armhf bash armhf 5.1-1ubuntu1 [606 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdutils armhf 1:2.36.1-1ubuntu2 [78.6 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main armhf coreutils armhf 8.32-4ubuntu2 [1207 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main armhf tar armhf 1.32+dfsg-1 [249 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main armhf dpkg armhf 1.20.5ubuntu3 [1127 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main armhf dash armhf 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [79.3 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main armhf grep armhf 3.6-1 [143 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf login armhf 1:4.8.1-1ubuntu7 [217 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main armhf libncursesw6 armhf 6.2+20201114-2 [106 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf libtinfo6 armhf 6.2+20201114-2 [74.0 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main armhf ncurses-bin armhf 6.2+20201114-2 [165 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl-modules-5.32 all 5.32.0-6 [2754 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libperl5.32 armhf 5.32.0-6 [3357 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl armhf 5.32.0-6 [225 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl-base armhf 5.32.0-6 [1423 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf util-linux armhf 2.36.1-1ubuntu2 [1005 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libdebconfclient0 armhf 0.255ubuntu1 [5692 B] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf base-passwd armhf 3.5.48 [46.0 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf init-system-helpers all 1.60 [37.8 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc-bin armhf 2.32-0ubuntu6 [505 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf ncurses-base all 6.2+20201114-2 [18.4 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf sysvinit-utils armhf 2.96-5ubuntu1 [19.2 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf libxxhash0 armhf 0.8.0-1 [21.6 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcrypt20 armhf 1.8.7-2ubuntu1 [364 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main armhf liblz4-1 armhf 1.9.3-0ubuntu1 [49.4 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf systemd-sysv armhf 247.1-4ubuntu1 [10.3 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:66 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap-ng0 armhf 0.7.9-2.2build1 [9672 B] Get:67 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit1 armhf 1:2.8.5-3ubuntu3 [36.1 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main armhf libpcre2-8-0 armhf 10.35-2ubuntu1 [169 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main armhf libselinux1 armhf 3.1-2build2 [61.0 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage-common all 3.1-1build2 [10.0 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage1 armhf 3.1-1build2 [75.6 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main armhf passwd armhf 1:4.8.1-1ubuntu7 [751 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf adduser all 3.118ubuntu4 [163 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf systemd-timesyncd armhf 247.1-4ubuntu1 [27.7 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libapparmor1 armhf 3.0.0-0ubuntu5 [30.4 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main armhf libblkid1 armhf 2.36.1-1ubuntu2 [117 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libudev1 armhf 247.1-4ubuntu1 [61.5 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu4 [120 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main armhf libuuid1 armhf 2.36.1-1ubuntu2 [20.4 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main armhf libcryptsetup12 armhf 2:2.3.4-1ubuntu1 [174 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main armhf libip4tc2 armhf 1.8.5-3ubuntu4 [16.7 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libseccomp2 armhf 2.4.3-1ubuntu6 [32.5 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main armhf mount armhf 2.36.1-1ubuntu2 [113 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf systemd armhf 247.1-4ubuntu1 [3806 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libsystemd0 armhf 247.1-4ubuntu1 [250 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main armhf libapt-pkg6.0 armhf 2.1.15 [777 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main armhf apt armhf 2.1.15 [1265 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf init armhf 1.60 [6040 B] Get:89 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libacl1 armhf 2.2.53-9 [14.9 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main armhf libattr1 armhf 1:2.4.48-6 [11.7 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main armhf libmount1 armhf 2.36.1-1ubuntu2 [131 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main armhf libsmartcols1 armhf 2.36.1-1ubuntu2 [82.3 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main armhf libidn2-0 armhf 2.3.0-4 [49.5 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libp11-kit0 armhf 0.23.22-1 [170 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap2 armhf 1:2.44-1 [14.7 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main armhf readline-common all 8.1-1 [54.1 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main armhf libreadline8 armhf 8.1-1 [115 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main armhf libsqlite3-0 armhf 3.34.0-1 [504 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf openssl armhf 1.1.1f-1ubuntu5 [597 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main armhf tzdata all 2020d-1ubuntu1 [293 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main armhf dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main armhf libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main armhf libfakeroot armhf 1.25.3-1.1 [23.2 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main armhf fakeroot armhf 1.25.3-1.1 [60.9 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main armhf libnpth0 armhf 1.6-3 [6980 B] debconf: delaying package configuration, since apt-utils is not installed 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Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu6_armhf.deb ... Unpacking libc6-dev:armhf (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu6_armhf.deb ... Unpacking libc-dev-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:armhf (1:4.4.17-1ubuntu1) ... (Reading database ... 12722 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.8.0-34.37+21.04.1_armhf.deb ... Unpacking linux-libc-dev:armhf (5.8.0-34.37+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../01-libtirpc-common_1.3.1-1_all.deb ... Unpacking libtirpc-common (1.3.1-1) over (1.2.6-1build1) ... 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Setting up libcc1-0:armhf (10.2.1-2ubuntu3) ... Setting up cpp-10 (10.2.1-2ubuntu3) ... Setting up libctf0:armhf (2.35.50.20201218-1ubuntu3) ... Setting up libgcc-10-dev:armhf (10.2.1-2ubuntu3) ... Setting up libreadline8:armhf (8.1-1) ... Setting up perl (5.32.0-6) ... Setting up libgssapi-krb5-2:armhf (1.17-10ubuntu1) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up binutils-arm-linux-gnueabihf (2.35.50.20201218-1ubuntu3) ... Setting up libtirpc3:armhf (1.3.1-1) ... Setting up binutils (2.35.50.20201218-1ubuntu3) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up libtirpc-dev:armhf (1.3.1-1) ... Setting up gcc-10 (10.2.1-2ubuntu3) ... Setting up libc6-dev:armhf (2.32-0ubuntu6) ... Setting up libstdc++-10-dev:armhf (10.2.1-2ubuntu3) ... Setting up g++-10 (10.2.1-2ubuntu3) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20768850 armhf hirsute-proposed -c chroot:build-PACKAGEBUILD-20768850 --arch=armhf --dist=hirsute-proposed --nolog libseqlib_1.1.2+dfsg-9ubuntu2.dsc Initiating build PACKAGEBUILD-20768850 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:57:27 UTC 2020 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-018.buildd +==============================================================================+ | libseqlib 1.1.2+dfsg-9ubuntu2 (armhf) Tue, 05 Jan 2021 11:04:26 +0000 | +==============================================================================+ Package: libseqlib Version: 1.1.2+dfsg-9ubuntu2 Source Version: 1.1.2+dfsg-9ubuntu2 Distribution: hirsute-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20768850/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libseqlib_1.1.2+dfsg-9ubuntu2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libseqlib-FrlMLr/libseqlib-1.1.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-FrlMLr' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Okr4Uh/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Okr4Uh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Okr4Uh/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Okr4Uh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Okr4Uh/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-Okr4Uh/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (24.8 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Okr4Uh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (52.3 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14667 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev dpkg-deb: building package 'sbuild-build-depends-libseqlib-dummy' in '/<>/resolver-Okr4Uh/apt_archive/sbuild-build-depends-libseqlib-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libseqlib-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Okr4Uh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Okr4Uh/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Okr4Uh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Okr4Uh/apt_archive ./ Sources [579 B] Get:5 copy:/<>/resolver-Okr4Uh/apt_archive ./ Packages [663 B] Fetched 2205 B in 0s (34.5 kB/s) Reading package lists... Reading package lists... Install libseqlib build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism diffstat dwz file gettext gettext-base groff-base intltool-debian libaliased-perl libapt-pkg-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libbrotli1 libbwa-dev libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libelf1 libemail-address-xs-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-stripnondeterminism-perl libfml-dev libfml0 libfont-ttf-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-html5-entities-perl libhts-dev libhts3 libhx509-5-heimdal libicu67 libimport-into-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libjsoncpp-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnghttp2-14 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libpipeline1 libproc-processtable-perl libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsigsegv2 libssh-4 libssw-dev libssw0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtool libtry-tiny-perl libtype-tiny-perl libuchardet0 libunicode-utf8-perl liburi-perl libvariable-magic-perl libwind0-heimdal libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop m4 mailcap man-db media-types mime-support patchutils pkg-config pkg-kde-tools po-debconf python3 python3-minimal python3.9 python3.9-minimal t1utils ucf unzip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libxml-parser-perl liblzma-doc libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl m4-doc apparmor less www-browser cdbs libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binfmt-support zip Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libpackage-stash-xs-perl publicsuffix libsasl2-modules libltdl-dev libref-util-perl libtype-tiny-xs-perl libwww-perl libxml-sax-expat-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism diffstat dwz file gettext gettext-base groff-base intltool-debian libaliased-perl libapt-pkg-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libbrotli1 libbwa-dev libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libelf1 libemail-address-xs-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-stripnondeterminism-perl libfml-dev libfml0 libfont-ttf-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-html5-entities-perl libhts-dev libhts3 libhx509-5-heimdal libicu67 libimport-into-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libjsoncpp-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnghttp2-14 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libpipeline1 libproc-processtable-perl libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsigsegv2 libssh-4 libssw-dev libssw0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtool libtry-tiny-perl libtype-tiny-perl libuchardet0 libunicode-utf8-perl liburi-perl libvariable-magic-perl libwind0-heimdal libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop m4 mailcap man-db media-types mime-support patchutils pkg-config pkg-kde-tools po-debconf python3 python3-minimal python3.9 python3.9-minimal sbuild-build-depends-libseqlib-dummy t1utils ucf unzip zlib1g-dev 0 upgraded, 168 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7 MB of archives. After this operation, 111 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Okr4Uh/apt_archive ./ sbuild-build-depends-libseqlib-dummy 0.invalid.0 [948 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main armhf libpython3.9-minimal armhf 3.9.1-1 [742 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main armhf libexpat1 armhf 2.2.10-1 [55.1 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main armhf python3.9-minimal armhf 3.9.1-1 [1579 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf python3-minimal armhf 3.9.1-1 [24.0 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main armhf media-types all 1.0.1ubuntu1 [10.9 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf mailcap all 3.67ubuntu1 [24.2 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main armhf mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf libpython3.9-stdlib armhf 3.9.1-1 [1653 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main armhf python3.9 armhf 3.9.1-1 [414 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libpython3-stdlib armhf 3.9.1-1 [7244 B] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf python3 armhf 3.9.1-1 [48.8 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdextrautils armhf 2.36.1-1ubuntu2 [70.7 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf groff-base armhf 1.22.4-5 [759 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf libpipeline1 armhf 1.5.3-1 [23.3 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf man-db armhf 2.9.3-2 [1082 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic-mgc armhf 1:5.39-3 [228 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic1 armhf 1:5.39-3 [71.7 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf file armhf 1:5.39-3 [22.7 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libelf1 armhf 0.182-2 [39.7 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libglib2.0-0 armhf 2.66.4-1 [1140 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf libicu67 armhf 67.1-5 [8312 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf libxml2 armhf 2.9.10+dfsg-6.3build1 [531 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main armhf libyaml-0-2 armhf 0.2.2-1 [41.3 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main armhf ucf all 3.0043 [56.1 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main armhf libpsl5 armhf 0.21.0-1.1ubuntu1 [51.1 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libsigsegv2 armhf 2.12-3 [13.1 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf m4 armhf 1.4.18-4 [187 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf autoconf all 2.69-14 [293 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main armhf autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf automake all 1:1.16.3-2ubuntu1 [552 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf autopoint all 0.21-3 [423 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/universe armhf d-shlibs all 0.98 [9592 B] Get:36 http://ftpmaster.internal/ubuntu hirsute/main armhf libtool all 2.4.6-14 [161 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-autoreconf all 19 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libdebhelper-perl all 13.3ubuntu4 [63.8 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:41 http://ftpmaster.internal/ubuntu hirsute/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:43 http://ftpmaster.internal/ubuntu hirsute/main armhf dwz armhf 0.13+20201015-2 [177 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf debhelper all 13.3ubuntu4 [881 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main armhf diffstat armhf 1.63-1 [25.1 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main armhf libaliased-perl all 0.34-1.1 [13.3 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf libapt-pkg-perl armhf 0.1.36build4 [63.8 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main armhf libroken18-heimdal armhf 7.7.0+dfsg-2 [34.5 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-2 [140 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf libb-hooks-op-check-perl armhf 0.22-1build3 [9860 B] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevel-callchecker-perl armhf 0.008-1ubuntu2 [14.2 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf libparams-classify-perl armhf 0.015-1build3 [19.8 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf libtry-tiny-perl all 0.30-1 [20.5 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf libvariable-magic-perl armhf 0.62-1build3 [31.4 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [17.0 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main armhf libbrotli1 armhf 1.0.9-2build2 [259 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbwa-dev armhf 0.7.17-5 [127 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main armhf libcapture-tiny-perl all 0.48-1 [20.4 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main armhf libclass-data-inheritable-perl all 0.08-3 [8084 B] Get:68 http://ftpmaster.internal/ubuntu hirsute/main armhf libclass-method-modifiers-perl all 2.13-1 [16.2 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main armhf libclass-xsaccessor-perl armhf 1.19-3build6 [32.6 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf libclone-perl armhf 0.45-1build1 [9908 B] Get:71 http://ftpmaster.internal/ubuntu hirsute/main armhf libconfig-tiny-perl all 2.24-1 [12.4 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main armhf libcpanel-json-xs-perl armhf 4.25-1build1 [109 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-2 [24.3 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-2 [78.5 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libwind0-heimdal armhf 7.7.0+dfsg-2 [47.2 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-2 [88.8 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-2 [170 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-2 [13.2 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-2 [79.9 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2ubuntu1 [13.2 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main armhf libsasl2-2 armhf 2.1.27+dfsg-2ubuntu1 [42.4 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libldap-2.4-2 armhf 2.4.56+dfsg-1ubuntu1 [134 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main armhf libnghttp2-14 armhf 1.42.0-1 [60.7 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build2 [48.9 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main armhf libssh-4 armhf 0.9.5-1 [147 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main armhf libcurl3-gnutls armhf 7.72.0-1ubuntu1 [204 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main armhf libcurl4-gnutls-dev armhf 7.72.0-1ubuntu1 [295 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main armhf libexception-class-perl all 1.44-1 [25.9 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main armhf libiterator-perl all 0.03+ds1-1.1 [18.2 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main armhf libiterator-util-perl all 0.02+ds1-1.1 [13.6 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main armhf libexporter-tiny-perl all 1.002002-1 [36.2 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/universe armhf liblist-moreutils-xs-perl armhf 0.430-2 [33.7 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf liblist-moreutils-perl all 0.430-2 [38.2 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main armhf libparams-util-perl armhf 1.102-1build1 [20.7 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-install-perl all 0.928-1.1 [9972 B] Get:97 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2.10-2 [44.4 kB] Get:126 http://ftpmaster.internal/ubuntu hirsute/universe armhf libmarkdown2 armhf 2.2.6-1ubuntu1 [29.1 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute/main armhf librole-tiny-perl all 2.001004-1 [16.5 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/main armhf libstrictures-perl all 2.000006-1 [16.3 kB] Get:129 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-quote-perl all 2.006006-1 [19.5 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/main armhf libmoo-perl all 2.004004-1 [46.9 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/main armhf libmoox-aliases-perl all 0.001006-1.1 [6632 B] Get:132 http://ftpmaster.internal/ubuntu hirsute/main armhf libmouse-perl armhf 2.5.10-1build2 [151 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/main armhf libpackage-stash-perl all 0.39-1 [19.1 kB] Get:134 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-identify-perl armhf 0.14-1build3 [10.1 kB] Get:135 http://ftpmaster.internal/ubuntu 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libtext-levenshteinxs-perl armhf 0.03-4build8 [8028 B] Get:145 http://ftpmaster.internal/ubuntu hirsute/universe armhf libtext-markdown-discount-perl armhf 0.12-1build1 [11.5 kB] Get:146 http://ftpmaster.internal/ubuntu hirsute/main armhf libtext-xslate-perl armhf 3.5.8-1build2 [177 kB] Get:147 http://ftpmaster.internal/ubuntu hirsute/main armhf libtime-duration-perl all 1.21-1 [13.1 kB] Get:148 http://ftpmaster.internal/ubuntu hirsute/main armhf libtime-moment-perl armhf 0.44-1build4 [69.3 kB] Get:149 http://ftpmaster.internal/ubuntu hirsute/main armhf libtimedate-perl all 2.3300-1 [33.9 kB] Get:150 http://ftpmaster.internal/ubuntu hirsute/main armhf libtype-tiny-perl all 1.012000-1 [316 kB] Get:151 http://ftpmaster.internal/ubuntu hirsute/main armhf libunicode-utf8-perl armhf 0.62-1build2 [17.1 kB] Get:152 http://ftpmaster.internal/ubuntu hirsute/main armhf liburi-perl all 5.05-1 [77.5 kB] Get:153 http://ftpmaster.internal/ubuntu hirsute/main armhf libxml-namespacesupport-perl all 1.12-1.1 [13.2 kB] Get:154 http://ftpmaster.internal/ubuntu hirsute/main armhf libxml-sax-base-perl all 1.09-1.1 [19.0 kB] Get:155 http://ftpmaster.internal/ubuntu hirsute/main armhf libxml-sax-perl all 1.02+dfsg-1 [56.2 kB] Get:156 http://ftpmaster.internal/ubuntu hirsute/main armhf libxml-libxml-perl armhf 2.0134+dfsg-2build1 [296 kB] Get:157 http://ftpmaster.internal/ubuntu hirsute/main armhf libyaml-libyaml-perl armhf 0.82+repack-1build1 [25.6 kB] Get:158 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevel-size-perl armhf 0.83-1build2 [19.3 kB] Get:159 http://ftpmaster.internal/ubuntu hirsute/main armhf libipc-run3-perl all 0.048-2 [31.4 kB] Get:160 http://ftpmaster.internal/ubuntu hirsute/main armhf lzip armhf 1.21-8 [71.7 kB] Get:161 http://ftpmaster.internal/ubuntu hirsute/main armhf lzop armhf 1.04-2 [81.2 kB] Get:162 http://ftpmaster.internal/ubuntu hirsute/main armhf patchutils armhf 0.4.2-1 [70.0 kB] Get:163 http://ftpmaster.internal/ubuntu hirsute/main armhf t1utils armhf 1.41-4 [48.4 kB] Get:164 http://ftpmaster.internal/ubuntu hirsute/main armhf unzip armhf 6.0-25ubuntu1 [155 kB] Get:165 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf lintian all 2.104.0 [940 kB] Get:166 http://ftpmaster.internal/ubuntu hirsute/main armhf pkg-config armhf 0.29.2-1ubuntu1 [43.4 kB] Get:167 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libjsoncpp-dev armhf 1.9.4-4 [22.0 kB] Get:168 http://ftpmaster.internal/ubuntu hirsute/universe armhf pkg-kde-tools armhf 0.15.32ubuntu4 [96.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.7 MB in 2s (14.0 MB/s) Selecting previously unselected package libpython3.9-minimal:armhf. (Reading database ... 14667 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.1-1_armhf.deb ... Unpacking libpython3.9-minimal:armhf (3.9.1-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.10-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.1-1_armhf.deb ... Unpacking python3.9-minimal (3.9.1-1) ... Setting up libpython3.9-minimal:armhf (3.9.1-1) ... Setting up libexpat1:armhf (2.2.10-1) ... Setting up python3.9-minimal (3.9.1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14960 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.1-1_armhf.deb ... Unpacking python3-minimal (3.9.1-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_1.0.1ubuntu1_all.deb ... 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Unpacking libjsoncpp-dev:armhf (1.9.4-4) ... Selecting previously unselected package pkg-kde-tools. Preparing to unpack .../156-pkg-kde-tools_0.15.32ubuntu4_armhf.deb ... Unpacking pkg-kde-tools (0.15.32ubuntu4) ... Selecting previously unselected package sbuild-build-depends-libseqlib-dummy. Preparing to unpack .../157-sbuild-build-depends-libseqlib-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-libseqlib-dummy (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36build4) ... Setting up media-types (1.0.1ubuntu1) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up libpsl5:armhf (0.21.0-1.1ubuntu1) ... Setting up libunicode-utf8-perl (0.62-1build2) ... Setting up libmouse-perl (2.5.10-1build2) ... Setting up bsdextrautils (2.36.1-1ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libdata-messagepack-perl (1.00-4build1) ... Setting up libicu67:armhf (67.1-5) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libclone-perl (0.45-1build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:armhf (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1build3) ... Setting up libglib2.0-0:armhf (2.66.4-1) ... No schema files found: doing nothing. Setting up libcpanel-json-xs-perl (4.25-1build1) ... Setting up libdevel-size-perl (0.83-1build2) ... Setting up unzip (6.0-25ubuntu1) ... Setting up libdebhelper-perl (13.3ubuntu4) ... Setting up libbrotli1:armhf (1.0.9-2build2) ... Setting up libyaml-libyaml-perl (0.82+repack-1build1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:armhf (1.42.0-1) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up libdeflate0:armhf (1.7-1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up liblzo2-2:armhf (2.10-2) ... Setting up libtime-moment-perl (0.44-1build4) ... Setting up file (1:5.39-3) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.018+ds-1build1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libfml0:armhf (0.1-13) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2ubuntu1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up lzip (1.21-8) ... Setting up libsigsegv2:armhf (2.12-3) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1build3) ... Setting up autopoint (0.21-3) ... Setting up libb-hooks-op-check-perl (0.22-1build3) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up d-shlibs (0.98) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up ucf (3.0043) ... Setting up libparams-util-perl (1.102-1build1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:armhf (0.9.5-1) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1build2) ... Setting up libbwa-dev (0.7.17-5) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libjsoncpp24:armhf (1.9.4-4) ... Setting up libtimedate-perl (2.3300-1) ... Setting up liblzma-dev:armhf (5.2.4-1ubuntu1) ... Setting up libsub-name-perl (0.26-1build1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu4) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl (0.59-2build1) ... Setting up libpath-tiny-perl (0.114-2) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3build6) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4build8) ... Setting up libdeflate-dev:armhf (1.7-1) ... Setting up libperlio-gzip-perl (0.19-1build6) ... Setting up mailcap (3.67ubuntu1) ... Setting up libelf1:armhf (0.182-2) ... Setting up libssw0:armhf (1.1-11) ... Setting up libxml2:armhf (2.9.10+dfsg-6.3build1) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1build1) ... Setting up libmarkdown2:armhf (2.2.6-1ubuntu1) ... Setting up liburi-perl (5.05-1) ... Setting up libpython3.9-stdlib:armhf (3.9.1-1) ... Setting up libpython3-stdlib:armhf (3.9.1-1) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libemail-address-xs-perl (1.04-1build4) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libjsoncpp-dev:armhf (1.9.4-4) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libfml-dev:armhf (0.1-13) ... Setting up mime-support (3.66) ... Setting up libssw-dev:armhf (1.1-11) ... Setting up libtool (2.4.6-14) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libtype-tiny-perl (1.012000-1) ... Setting up libtext-markdown-discount-perl:armhf (0.12-1build1) ... Setting up m4 (1.4.18-4) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu2) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-14) ... Setting up libxml-libxml-perl (2.0134+dfsg-2build1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up python3.9 (3.9.1-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libparams-classify-perl (0.015-1build3) ... Setting up python3 (3.9.1-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libldap-2.4-2:armhf (2.4.56+dfsg-1ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.72.0-1ubuntu1) ... Setting up libcurl4-gnutls-dev:armhf (7.72.0-1ubuntu1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libhts3:armhf (1.11-4) ... Setting up libhts-dev:armhf (1.11-4) ... Setting up lintian (2.104.0) ... Setting up pkg-kde-tools (0.15.32ubuntu4) ... Setting up debhelper (13.3ubuntu4) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-libseqlib-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-128-generic arm64 (armv7l) Toolchain package versions: binutils_2.35.50.20201218-1ubuntu3 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.1-2ubuntu3 gcc-10_10.2.1-2ubuntu3 libc6-dev_2.32-0ubuntu6 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 linux-libc-dev_5.8.0-34.37+21.04.1 Package versions: adduser_3.118ubuntu4 advancecomp_2.1-2.1build1 apt_2.1.15 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 binutils_2.35.50.20201218-1ubuntu3 binutils-arm-linux-gnueabihf_2.35.50.20201218-1ubuntu3 binutils-common_2.35.50.20201218-1ubuntu3 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 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perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkg-kde-tools_0.15.32ubuntu4 pkgbinarymangler_146 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.9.1-1 python3-minimal_3.9.1-1 python3.9_3.9.1-1 python3.9-minimal_3.9.1-1 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libseqlib-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 t1utils_1.41-4 tar_1.32+dfsg-1 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 ucf_3.0043 unzip_6.0-25ubuntu1 util-linux_2.36.1-1ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Jan 5 11:01:47 2021 UTC gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libseqlib_1.1.2+dfsg-9ubuntu2.dsc dpkg-source: info: extracting libseqlib in /<>/libseqlib-1.1.2+dfsg dpkg-source: info: unpacking libseqlib_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking libseqlib_1.1.2+dfsg-9ubuntu2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libjsoncpp_1_8_4_compat dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying adapt_to_debian_fermi-lite.patch dpkg-source: info: applying fix_fermi-lite_usage.patch dpkg-source: info: applying fix_htslib_usage.patch dpkg-source: info: applying fml_include_path.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying use_debian_packaged_jsoncpp.patch dpkg-source: info: applying use_debian_packaged_ssw.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying fix_private_htslib_usage.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20768850 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20768850 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20768850 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libseqlib dpkg-buildpackage: info: source version 1.1.2+dfsg-9ubuntu2 dpkg-buildpackage: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with pkgkde_symbolshelper dh_clean debian/rules binary-arch dh binary-arch --with pkgkde_symbolshelper dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:17: installing './compile' configure.ac:19: installing './config.guess' configure.ac:19: installing './config.sub' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gzopen... -lz checking for library containing clock_gettime... none required checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for htslib... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/seqtools/Makefile config.status: creating libseqlib.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make all-recursive make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg' Making all in src make[3]: Entering directory '/<>/libseqlib-1.1.2+dfsg/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-ReadFilter.lo `test -f 'ReadFilter.cpp' || echo './'`ReadFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-SeqPlot.lo `test -f 'SeqPlot.cpp' || echo './'`SeqPlot.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -fPIC -DPIC -o .libs/libseqlib_la-BFC.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1 ReadFilter.cpp: In constructor ‘SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const string&, const SeqLib::BamHeader&)’: ReadFilter.cpp:181:18: warning: ‘Reader’ is deprecated: Use CharReader and CharReaderBuilder instead. [-Wdeprecated-declarations] 181 | Json::Reader reader; | ^~~~~~ In file included from /usr/include/jsoncpp/json/json.h:11, from ../SeqLib/ReadFilter.h:10, from ReadFilter.cpp:1: /usr/include/jsoncpp/json/reader.h:37:63: note: declared here 37 | "Use CharReader and CharReaderBuilder instead.") JSON_API Reader { | ^~~~~~ ReadFilter.cpp:181:18: warning: ‘Json::Reader::Reader()’ is deprecated: Use CharReader and CharReaderBuilder instead [-Wdeprecated-declarations] 181 | Json::Reader reader; | ^~~~~~ In file included from /usr/include/jsoncpp/json/json.h:11, from ../SeqLib/ReadFilter.h:10, from ReadFilter.cpp:1: /usr/include/jsoncpp/json/reader.h:56:3: note: declared here 56 | Reader(); | ^~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-GenomicRegion.lo `test -f 'GenomicRegion.cpp' || echo './'`GenomicRegion.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-RefGenome.lo `test -f 'RefGenome.cpp' || echo './'`RefGenome.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -o libseqlib_la-RefGenome.o >/dev/null 2>&1 In file included from /usr/include/c++/10/vector:72, from ../SeqLib/ReadFilter.h:7, from ReadFilter.cpp:1: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SeqLib::Filter::AbstractRule&}; _Tp = SeqLib::Filter::AbstractRule; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from ../SeqLib/ReadFilter.h:7, from ReadFilter.cpp:1: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void SeqLib::Filter::ReadFilter::AddRule(const SeqLib::Filter::AbstractRule&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamWriter.lo `test -f 'BamWriter.cpp' || echo './'`BamWriter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1 /usr/include/c++/10/bits/stl_vector.h: In constructor ‘SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const string&, const SeqLib::BamHeader&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o In file included from /usr/include/c++/10/vector:72, from ../SeqLib/BamRecord.h:6, from BamRecord.cpp:1: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector SeqLib::BamRecord::GetSmartDoubleTag(const string&) const’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -lfml `/usr/bin/pkg-config --libs htslib` `/usr/bin/pkg-config --libs jsoncpp` -lssw -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/arm-linux-gnueabihf libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo -lz -pthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/10/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lfml -lhts -ljsoncpp -lssw -lz -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/10/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libseqlib.so.1 -o .libs/libseqlib.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libseqlib.so.1" && ln -s "libseqlib.so.1.0.0" "libseqlib.so.1") libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.1.0.0" "libseqlib.so") libtool: link: ar cr .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o libtool: link: ranlib .libs/libseqlib.a libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" ) make[3]: Leaving directory '/<>/libseqlib-1.1.2+dfsg/src' make[3]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make[3]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' Making check in src make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg/src' make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libseqlib-1.1.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' echo "mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin" mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' dh_install # Trick to get also headers moved by d-shlibmove cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/SeqLib usr/include \ --override s/libfml0-dev/libfml-dev/ \ --override s/libssw0-dev/libssw-dev/ \ src/.libs/libseqlib.so Library package automatic movement utility --> libfml-dev package exists. --> libhts-dev package exists. --> libjsoncpp-dev package exists. --> libssw-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libseqlib1/usr/lib/arm-linux-gnueabihf mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf mv /<>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1 debian/libseqlib1/usr/lib/arm-linux-gnueabihf mv /<>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1.0.0 debian/libseqlib1/usr/lib/arm-linux-gnueabihf PKGDEV=libseqlib-dev PKGSHL=libseqlib1 install -d -m 755 debian/libseqlib-dev/usr/include mv debian/SeqLib debian/libseqlib-dev/usr/include mkdir -p /<>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv libseqlib.pc /<>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libseqlib1/DEBIAN/symbols doesn't match completely debian/libseqlib1.symbols --- debian/libseqlib1.symbols (libseqlib1_1.1.2+dfsg-9ubuntu2_armhf) +++ dpkg-gensymbolstBYi3h 2021-01-05 11:07:20.947411283 +0000 @@ -65,7 +65,7 @@ (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CreateTreeMapEv@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE14CoordinateSortEv@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE25MergeOverlappingIntervalsEv@Base 1.1.2 - (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1Ev@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2 @@ -253,12 +253,12 @@ (optional=templinst)_ZNKSt5ctypeIcE8do_widenEc@Base 1.1.2 (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.1.2 (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.1.2 - (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.1.2 (optional=templinst|arch=kfreebsd-amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE10_M_emplaceIJS6_IS5_iEEEES6_INSA_14_Node_iteratorIS8_Lb0ELb1EEEbESt17integral_constantIbLb1EEDpOT_@Base 1.1.2 (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE5clearEv@Base 1.1.2 (optional=templinst|subst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2 - (optional=templinst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.1.2 - (optional=templinst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.1.2 (optional=templinst|arch=kfreebsd-amd64|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE10_M_emplaceIJS0_IiS4_EEEES0_INS7_14_Node_iteratorIS5_Lb0ELb0EEEbESt17integral_constantIbLb1EEDpOT_@Base 1.1.2 (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.1.2 (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.1.2 @@ -267,11 +267,11 @@ (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2 (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 1.1.2 (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2 - (optional=templinst)_ZNSt10unique_ptrIN12aho_corasick13interval_treeINS0_7ahoemitIcEEE4nodeESt14default_deleteIS5_EED1Ev@Base 1.1.2 - (optional=templinst)_ZNSt10unique_ptrIN12aho_corasick13interval_treeINS0_7ahoemitIcEEE4nodeESt14default_deleteIS5_EED2Ev@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZNSt10unique_ptrIN12aho_corasick13interval_treeINS0_7ahoemitIcEEE4nodeESt14default_deleteIS5_EED1Ev@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZNSt10unique_ptrIN12aho_corasick13interval_treeINS0_7ahoemitIcEEE4nodeESt14default_deleteIS5_EED2Ev@Base 1.1.2 (optional=templinst)_ZNSt11_Deque_baseIPN12aho_corasick5stateIcEESaIS3_EED1Ev@Base 1.1.2 (optional=templinst)_ZNSt11_Deque_baseIPN12aho_corasick5stateIcEESaIS3_EED2Ev@Base 1.1.2 - (optional=templinst)_ZNSt12_Destroy_auxILb0EE9__destroyIPN12aho_corasick7ahoemitIcEEEEvT_S6_@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZNSt12_Destroy_auxILb0EE9__destroyIPN12aho_corasick7ahoemitIcEEEEvT_S6_@Base 1.1.2 (optional=templinst)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev@Base 1.1.2 (optional=templinst)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev@Base 1.1.2 (optional=templinst)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED1Ev@Base 1.1.2 @@ -374,12 +374,12 @@ (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev@Base 1.1.2 (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev@Base 1.1.2 (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev@Base 1.1.2 - (optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.2 - (optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.2 - (optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.2 - (optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.2 - (optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.2 - (optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.2 + (optional=templinst)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.2 + (optional=templinst)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.2 + (optional=templinst)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.2 + (optional=templinst)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.2 + (optional=templinst)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.2 + (optional=templinst)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.2 (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.1.2 (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.1.2 (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info@Base 1.1.2 @@ -404,12 +404,13 @@ (optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.2 (optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.2 (optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.2 - (optional=templinst)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.2 - (optional=templinst)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu2# (optional=templinst)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.2 (optional=templinst)_ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 1.1.2 (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2 (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2 (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.1.2 + _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE9push_backERKS2_@Base 1.1.2+dfsg-9ubuntu2 (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EEC1ERKS4_@Base 1.1.2 (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EEC2ERKS4_@Base 1.1.2 (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev@Base 1.1.2 dh_shlibdeps -a -a dpkg-shlibdeps: warning: symbol nst_nt4_table used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bns_dump used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwa_fill_scmat used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_gen_cnt_table used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bns_destroy used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol err_xopen_core used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_cal_sa used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_dump_bwt used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_bwtupdate_core used by debian/libseqlib1/usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing libseqlib1 (in debian/libseqlib1); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib-dev (in debian/libseqlib-dev); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib1-dbgsym (in debian/.debhelper/libseqlib1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libseqlib1/DEBIAN/control, package libseqlib1, directory debian/libseqlib1 pkgstripfiles: Truncating usr/share/doc/libseqlib1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib1 ... pkgstripfiles: No PNG files. pkgstripfiles: processing control file: debian/.debhelper/libseqlib1/dbgsym-root/DEBIAN/control, package libseqlib1-dbgsym, directory debian/.debhelper/libseqlib1/dbgsym-root dpkg-deb: building package 'libseqlib1-dbgsym' in 'debian/.debhelper/scratch-space/build-libseqlib1/libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.deb'. pkgstripfiles: processing control file: debian/libseqlib-dev/DEBIAN/control, package libseqlib-dev, directory debian/libseqlib-dev dpkg-deb: building package 'libseqlib1' in '../libseqlib1_1.1.2+dfsg-9ubuntu2_armhf.deb'. Searching for duplicated docs in dependency libseqlib1... symlinking changelog.Debian.gz in libseqlib-dev to file in libseqlib1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.1.2+dfsg-9ubuntu2_armhf.deb'. Renaming libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.deb to libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libseqlib_1.1.2+dfsg-9ubuntu2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-01-05T11:07:31Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libseqlib_1.1.2+dfsg-9ubuntu2_armhf.changes: -------------------------------------------- Format: 1.8 Date: Tue, 05 Jan 2021 12:01:35 +0100 Source: libseqlib Binary: libseqlib-dev libseqlib1 Architecture: armhf Version: 1.1.2+dfsg-9ubuntu2 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Gianfranco Costamagna Description: libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat libseqlib1 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat Changes: libseqlib (1.1.2+dfsg-9ubuntu2) hirsute; urgency=medium . * Fixup symbols on ppc64el Checksums-Sha1: 6b8a46ab122c0aa28ad92c1c9e7d2325aac409d1 162648 libseqlib-dev_1.1.2+dfsg-9ubuntu2_armhf.deb 3058c16e9f965643c5f821774b06480cbbb38076 1602948 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.ddeb e294c7b34ebb9876e28d532a8e5c161b89da0240 104824 libseqlib1_1.1.2+dfsg-9ubuntu2_armhf.deb 712bde877f09097aeabb2a9f436681f858c5b474 11353 libseqlib_1.1.2+dfsg-9ubuntu2_armhf.buildinfo Checksums-Sha256: e77879dd6873cb7f8a8b0356cfc11ad7b2aadc89b6b7e7c1678f7c5183c13c3f 162648 libseqlib-dev_1.1.2+dfsg-9ubuntu2_armhf.deb 5074d5dc8fd39004db981db775c7b79a6336a15c46fdace9fea9d44afc5f38df 1602948 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.ddeb 9a2c7802c170df6793fdc1e70caba2850df58e8e183565413af0aaaf61d533ae 104824 libseqlib1_1.1.2+dfsg-9ubuntu2_armhf.deb 0560406fd33a016fd5de64794f8abfad77e2aae33b754b06362e92ef41e05a06 11353 libseqlib_1.1.2+dfsg-9ubuntu2_armhf.buildinfo Files: c4b6324361c0585976cc9576de175257 162648 libdevel optional libseqlib-dev_1.1.2+dfsg-9ubuntu2_armhf.deb a2e19b8c0bf3328cdcd4547422858dae 1602948 debug optional libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.ddeb 7357bbae932ceea047b21e519e4ed90a 104824 libs optional libseqlib1_1.1.2+dfsg-9ubuntu2_armhf.deb cb2acaeeda775df99b2ff1fb8c471a9b 11353 science optional libseqlib_1.1.2+dfsg-9ubuntu2_armhf.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libseqlib Binary: libseqlib-dev libseqlib1 libseqlib1-dbgsym Architecture: armhf Version: 1.1.2+dfsg-9ubuntu2 Checksums-Md5: c4b6324361c0585976cc9576de175257 162648 libseqlib-dev_1.1.2+dfsg-9ubuntu2_armhf.deb a2e19b8c0bf3328cdcd4547422858dae 1602948 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.ddeb 7357bbae932ceea047b21e519e4ed90a 104824 libseqlib1_1.1.2+dfsg-9ubuntu2_armhf.deb Checksums-Sha1: 6b8a46ab122c0aa28ad92c1c9e7d2325aac409d1 162648 libseqlib-dev_1.1.2+dfsg-9ubuntu2_armhf.deb 3058c16e9f965643c5f821774b06480cbbb38076 1602948 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.ddeb e294c7b34ebb9876e28d532a8e5c161b89da0240 104824 libseqlib1_1.1.2+dfsg-9ubuntu2_armhf.deb Checksums-Sha256: e77879dd6873cb7f8a8b0356cfc11ad7b2aadc89b6b7e7c1678f7c5183c13c3f 162648 libseqlib-dev_1.1.2+dfsg-9ubuntu2_armhf.deb 5074d5dc8fd39004db981db775c7b79a6336a15c46fdace9fea9d44afc5f38df 1602948 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu2_armhf.ddeb 9a2c7802c170df6793fdc1e70caba2850df58e8e183565413af0aaaf61d533ae 104824 libseqlib1_1.1.2+dfsg-9ubuntu2_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Tue, 05 Jan 2021 11:07:30 +0000 Build-Path: /<>/libseqlib-1.1.2+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu4), apt (= 2.1.15), autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3), autotools-dev (= 20180224.1+nmu1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1-1ubuntu1), binutils (= 2.35.50.20201218-1ubuntu3), binutils-arm-linux-gnueabihf (= 2.35.50.20201218-1ubuntu3), binutils-common (= 2.35.50.20201218-1ubuntu3), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 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libtext-levenshteinxs-perl (= 0.03-4build8), libtext-markdown-discount-perl (= 0.12-1build1), libtext-xslate-perl (= 3.5.8-1build2), libtime-duration-perl (= 1.21-1), libtime-moment-perl (= 0.44-1build4), libtimedate-perl (= 2.3300-1), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-14), libtry-tiny-perl (= 0.30-1), libtype-tiny-perl (= 1.012000-1), libubsan1 (= 10.2.1-2ubuntu3), libuchardet0 (= 0.0.7-1), libudev1 (= 247.1-4ubuntu1), libunicode-utf8-perl (= 0.62-1build2), libunistring2 (= 0.9.10-4), liburi-perl (= 5.05-1), libuuid1 (= 2.36.1-1ubuntu2), libvariable-magic-perl (= 0.62-1build3), libwind0-heimdal (= 7.7.0+dfsg-2), libxml-libxml-perl (= 2.0134+dfsg-2build1), libxml-namespacesupport-perl (= 1.12-1.1), libxml-sax-base-perl (= 1.09-1.1), libxml-sax-perl (= 1.02+dfsg-1), libxml2 (= 2.9.10+dfsg-6.3build1), libxxhash0 (= 0.8.0-1), libyaml-0-2 (= 0.2.2-1), libyaml-libyaml-perl (= 0.82+repack-1build1), libzstd1 (= 1.4.8+dfsg-1), lintian (= 2.104.0), linux-libc-dev (= 5.8.0-34.37+21.04.1), login (= 1:4.8.1-1ubuntu7), lsb-base (= 11.1.0ubuntu2), lzip (= 1.21-8), lzop (= 1.04-2), m4 (= 1.4.18-4), mailcap (= 3.67ubuntu1), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), media-types (= 1.0.1ubuntu1), mime-support (= 3.66), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), passwd (= 1:4.8.1-1ubuntu7), patch (= 2.7.6-6), patchutils (= 0.4.2-1), perl (= 5.32.0-6), perl-base (= 5.32.0-6), perl-modules-5.32 (= 5.32.0-6), pkg-config (= 0.29.2-1ubuntu1), pkg-kde-tools (= 0.15.32ubuntu4), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.1-1), python3-minimal (= 3.9.1-1), python3.9 (= 3.9.1-1), python3.9-minimal (= 3.9.1-1), readline-common (= 8.1-1), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), t1utils (= 1.41-4), tar (= 1.32+dfsg-1), tzdata (= 2020d-1ubuntu1), ubuntu-keyring (= 2020.06.17.1), ucf (= 3.0043), unzip (= 6.0-25ubuntu1), util-linux (= 2.36.1-1ubuntu2), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609844495" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libseqlib-dev_1.1.2+dfsg-9ubuntu2_armhf.deb ------------------------------------------- new Debian package, version 2.0. size 162648 bytes: control archive=1772 bytes. 1426 bytes, 26 lines control 1663 bytes, 24 lines md5sums Package: libseqlib-dev Source: libseqlib Version: 1.1.2+dfsg-9ubuntu2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 747 Depends: libseqlib1 (= 1.1.2+dfsg-9ubuntu2), libfml-dev, libhts-dev, libjsoncpp-dev, libssw-dev, zlib1g-dev, libbwa-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev) C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. . This package contains the header files and static library. drwxr-xr-x root/root 0 2021-01-05 11:01 ./ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/include/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/include/SeqLib/ -rw-r--r-- root/root 3874 2021-01-05 11:01 ./usr/include/SeqLib/BFC.h -rw-r--r-- root/root 6285 2017-05-12 20:31 ./usr/include/SeqLib/BWAWrapper.h -rw-r--r-- root/root 3605 2021-01-05 11:01 ./usr/include/SeqLib/BamHeader.h -rw-r--r-- root/root 8503 2017-05-12 20:31 ./usr/include/SeqLib/BamReader.h -rw-r--r-- root/root 31497 2021-01-05 11:01 ./usr/include/SeqLib/BamRecord.h -rw-r--r-- root/root 1979 2021-01-05 11:01 ./usr/include/SeqLib/BamWalker.h -rw-r--r-- root/root 3096 2017-05-12 20:31 ./usr/include/SeqLib/BamWriter.h -rw-r--r-- root/root 1139 2017-05-12 20:31 ./usr/include/SeqLib/FastqReader.h -rw-r--r-- root/root 4022 2021-01-05 11:01 ./usr/include/SeqLib/FermiAssembler.h -rw-r--r-- root/root 6129 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegion.h -rw-r--r-- root/root 19701 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegionCollection.cpp -rw-r--r-- root/root 11804 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegionCollection.h -rw-r--r-- root/root 7320 2017-05-12 20:31 ./usr/include/SeqLib/IntervalTree.h -rw-r--r-- root/root 17397 2017-05-12 20:31 ./usr/include/SeqLib/ReadFilter.h -rw-r--r-- root/root 1387 2021-01-05 11:01 ./usr/include/SeqLib/RefGenome.h -rw-r--r-- root/root 3832 2017-05-12 20:31 ./usr/include/SeqLib/SeqLibCommon.h -rw-r--r-- root/root 4176 2017-05-12 20:31 ./usr/include/SeqLib/SeqLibUtils.h -rw-r--r-- root/root 2455 2017-05-12 20:31 ./usr/include/SeqLib/SeqPlot.h -rw-r--r-- root/root 1932 2017-05-12 20:31 ./usr/include/SeqLib/UnalignedSequence.h -rw-r--r-- root/root 17078 2017-05-12 20:31 ./usr/include/SeqLib/aho_corasick.hpp drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 576392 2021-01-05 11:01 ./usr/lib/arm-linux-gnueabihf/libseqlib.a lrwxrwxrwx root/root 0 2021-01-05 11:01 ./usr/lib/arm-linux-gnueabihf/libseqlib.so -> libseqlib.so.1.0.0 drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 301 2021-01-05 11:01 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libseqlib.pc drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/doc/libseqlib-dev/ lrwxrwxrwx root/root 0 2021-01-05 11:01 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz -> ../libseqlib1/changelog.Debian.gz -rw-r--r-- root/root 2441 2020-10-24 15:20 ./usr/share/doc/libseqlib-dev/copyright drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 145 2020-02-15 16:39 ./usr/share/lintian/overrides/libseqlib-dev libseqlib1_1.1.2+dfsg-9ubuntu2_armhf.deb ---------------------------------------- new Debian package, version 2.0. size 104824 bytes: control archive=5468 bytes. 1396 bytes, 24 lines control 229 bytes, 3 lines md5sums 39 bytes, 1 lines shlibs 40793 bytes, 433 lines symbols 72 bytes, 2 lines triggers Package: libseqlib1 Source: libseqlib Version: 1.1.2+dfsg-9ubuntu2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 266 Depends: libc6 (>= 2.4), libfml0 (>= 0.1), libgcc-s1 (>= 3.5), libhts3 (>= 1.10), libjsoncpp24 (>= 1.9.4), libssw0 (>= 1.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. drwxr-xr-x root/root 0 2021-01-05 11:01 ./ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2021-01-05 11:01 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.1 -> libseqlib.so.1.0.0 -rw-r--r-- root/root 214436 2021-01-05 11:01 ./usr/lib/arm-linux-gnueabihf/libseqlib.so.1.0.0 drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/doc/libseqlib1/ -rw-r--r-- root/root 1120 2021-01-05 11:01 ./usr/share/doc/libseqlib1/changelog.Debian.gz -rw-r--r-- root/root 2441 2020-10-24 15:20 ./usr/share/doc/libseqlib1/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 113 Distribution: hirsute-proposed Host Architecture: armhf Install-Time: 68 Job: libseqlib_1.1.2+dfsg-9ubuntu2.dsc Machine Architecture: arm64 Package: libseqlib Package-Time: 185 Source-Version: 1.1.2+dfsg-9ubuntu2 Space: n/a Status: successful Version: 1.1.2+dfsg-9ubuntu2 -------------------------------------------------------------------------------- Finished at 2021-01-05T11:07:31Z Build needed 00:03:05, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20768850 Scanning for processes to kill in build PACKAGEBUILD-20768850