https://launchpad.net/ubuntu/+source/libseqlib/1.1.2+dfsg-9ubuntu3/+build/20769275 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-021 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:57:35 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 5 Jan 12:33:51 ntpdate[1726]: adjust time server 10.211.37.1 offset 0.001369 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20769275 --image-type chroot /home/buildd/filecache-default/720a8366e1260e086c1691fe6381a3f2b1c21d81 Creating target for build PACKAGEBUILD-20769275 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20769275 Starting target for build PACKAGEBUILD-20769275 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20769275 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20769275 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20769275 Updating target for build PACKAGEBUILD-20769275 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main amd64 Packages [1384 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe amd64 Packages [13.0 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5390 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 Packages [192 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [63.5 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 Packages [801 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [347 kB] Fetched 22.2 MB in 7s (3335 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libisl23 libperl5.32 libxxhash0 perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libp11-kit0 libpcre2-8-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 105 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 86.0 MB of archives. After this operation, 54.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcrypt-dev amd64 1:4.4.17-1ubuntu1 [105 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc6-dev amd64 2.32-0ubuntu6 [2131 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc-dev-bin amd64 2.32-0ubuntu6 [30.9 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcrypt1 amd64 1:4.4.17-1ubuntu1 [78.8 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 linux-libc-dev amd64 5.8.0-34.37+21.04.1 [1138 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc-common all 1.3.1-1 [7452 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main amd64 libk5crypto3 amd64 1.17-10ubuntu1 [79.2 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgssapi-krb5-2 amd64 1.17-10ubuntu1 [121 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5-3 amd64 1.17-10ubuntu1 [332 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5support0 amd64 1.17-10ubuntu1 [30.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libssl1.1 amd64 1.1.1f-1ubuntu5 [1324 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc-dev amd64 1.3.1-1 [183 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc3 amd64 1.3.1-1 [76.9 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main amd64 libisl23 amd64 0.23-1 [652 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libcc1-0 amd64 10.2.1-2ubuntu3 [48.7 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libctf0 amd64 2.35.50.20201218-1ubuntu3 [95.3 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libctf-nobfd0 amd64 2.35.50.20201218-1ubuntu3 [94.6 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.35.50.20201218-1ubuntu3 [1825 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libbinutils amd64 2.35.50.20201218-1ubuntu3 [576 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils-common amd64 2.35.50.20201218-1ubuntu3 [216 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils amd64 2.35.50.20201218-1ubuntu3 [3388 B] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 gcc-10-base amd64 10.2.1-2ubuntu3 [19.3 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgcc-s1 amd64 10.2.1-2ubuntu3 [41.7 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgomp1 amd64 10.2.1-2ubuntu3 [102 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libitm1 amd64 10.2.1-2ubuntu3 [26.3 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libatomic1 amd64 10.2.1-2ubuntu3 [9288 B] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libasan6 amd64 10.2.1-2ubuntu3 [2060 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 liblsan0 amd64 10.2.1-2ubuntu3 [834 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libtsan0 amd64 10.2.1-2ubuntu3 [2009 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libubsan1 amd64 10.2.1-2ubuntu3 [784 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libquadmath0 amd64 10.2.1-2ubuntu3 [146 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 g++-10 amd64 10.2.1-2ubuntu3 [9759 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libstdc++-10-dev amd64 10.2.1-2ubuntu3 [1754 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgcc-10-dev amd64 10.2.1-2ubuntu3 [2344 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 gcc-10 amd64 10.2.1-2ubuntu3 [17.4 MB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 cpp-10 amd64 10.2.1-2ubuntu3 [8575 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libstdc++6 amd64 10.2.1-2ubuntu3 [501 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmpc3 amd64 1.2.0-1 [44.3 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libzstd1 amd64 1.4.8+dfsg-1 [304 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc6 amd64 2.32-0ubuntu6 [2683 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-files amd64 11ubuntu16 [60.5 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main amd64 bash amd64 5.1-1ubuntu1 [673 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 bsdutils amd64 1:2.36.1-1ubuntu2 [86.8 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main amd64 coreutils amd64 8.32-4ubuntu2 [1353 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main amd64 tar amd64 1.32+dfsg-1 [279 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main amd64 dpkg amd64 1.20.5ubuntu3 [1172 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main amd64 dash amd64 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [86.8 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main amd64 grep amd64 3.6-1 [155 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main amd64 login amd64 1:4.8.1-1ubuntu7 [220 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main amd64 libncursesw6 amd64 6.2+20201114-2 [132 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtinfo6 amd64 6.2+20201114-2 [87.3 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main amd64 ncurses-bin amd64 6.2+20201114-2 [173 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 perl-modules-5.32 all 5.32.0-6 [2754 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libperl5.32 amd64 5.32.0-6 [4064 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 perl amd64 5.32.0-6 [225 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 perl-base amd64 5.32.0-6 [1562 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main amd64 util-linux amd64 2.36.1-1ubuntu2 [1073 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdebconfclient0 amd64 0.255ubuntu1 [6184 B] Get:60 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-passwd amd64 3.5.48 [47.5 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 init-system-helpers all 1.60 [37.8 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc-bin amd64 2.32-0ubuntu6 [642 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main amd64 ncurses-base all 6.2+20201114-2 [18.4 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main amd64 sysvinit-utils amd64 2.96-5ubuntu1 [20.8 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxxhash0 amd64 0.8.0-1 [16.1 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgcrypt20 amd64 1.8.7-2ubuntu1 [424 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblz4-1 amd64 1.9.3-0ubuntu1 [56.0 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd-sysv amd64 247.1-4ubuntu1 [10.3 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:70 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcap-ng0 amd64 0.7.9-2.2build1 [11.0 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit1 amd64 1:2.8.5-3ubuntu3 [39.0 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre2-8-0 amd64 10.35-2ubuntu1 [204 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main amd64 libselinux1 amd64 3.1-2build2 [69.4 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage-common all 3.1-1build2 [10.0 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage1 amd64 3.1-1build2 [86.9 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main amd64 passwd amd64 1:4.8.1-1ubuntu7 [797 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 adduser all 3.118ubuntu4 [163 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd-timesyncd amd64 247.1-4ubuntu1 [28.1 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapparmor1 amd64 3.0.0-0ubuntu5 [35.5 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main amd64 libblkid1 amd64 2.36.1-1ubuntu2 [132 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libudev1 amd64 247.1-4ubuntu1 [69.1 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu4 [128 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuuid1 amd64 2.36.1-1ubuntu2 [21.6 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcryptsetup12 amd64 2:2.3.4-1ubuntu1 [195 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main amd64 libip4tc2 amd64 1.8.5-3ubuntu4 [18.7 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libseccomp2 amd64 2.4.3-1ubuntu6 [41.9 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main amd64 mount amd64 2.36.1-1ubuntu2 [121 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd amd64 247.1-4ubuntu1 [3988 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libsystemd0 amd64 247.1-4ubuntu1 [276 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapt-pkg6.0 amd64 2.1.15 [851 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main amd64 apt amd64 2.1.15 [1318 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 init amd64 1.60 [6040 B] Get:93 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libacl1 amd64 2.2.53-9 [17.6 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main amd64 libattr1 amd64 1:2.4.48-6 [12.9 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmount1 amd64 2.36.1-1ubuntu2 [147 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsmartcols1 amd64 2.36.1-1ubuntu2 [94.6 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main amd64 libidn2-0 amd64 2.3.0-4 [52.4 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libp11-kit0 amd64 0.23.22-1 [191 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcap2 amd64 1:2.44-1 [17.2 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main amd64 readline-common all 8.1-1 [54.1 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main amd64 libreadline8 amd64 8.1-1 [137 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsqlite3-0 amd64 3.34.0-1 [589 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 openssl amd64 1.1.1f-1ubuntu5 [621 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main amd64 tzdata all 2020d-1ubuntu1 [293 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main amd64 dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfakeroot amd64 1.25.3-1.1 [26.8 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main amd64 fakeroot amd64 1.25.3-1.1 [62.9 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnpth0 amd64 1.6-3 [8220 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.0 MB in 3s (30.3 MB/s) (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu6_amd64.deb ... Unpacking libc6-dev:amd64 (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu6_amd64.deb ... Unpacking libc-dev-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:amd64 (1:4.4.17-1ubuntu1) ... (Reading database ... 12979 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.8.0-34.37+21.04.1_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.8.0-34.37+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../01-libtirpc-common_1.3.1-1_all.deb ... Unpacking libtirpc-common (1.3.1-1) over (1.2.6-1build1) ... 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Setting up libatomic1:amd64 (10.2.1-2ubuntu3) ... Setting up libncursesw6:amd64 (6.2+20201114-2) ... Setting up libk5crypto3:amd64 (1.17-10ubuntu1) ... Setting up libperl5.32:amd64 (5.32.0-6) ... Setting up libubsan1:amd64 (10.2.1-2ubuntu3) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1ubuntu1) ... Setting up libkrb5-3:amd64 (1.17-10ubuntu1) ... Setting up libbinutils:amd64 (2.35.50.20201218-1ubuntu3) ... Setting up libisl23:amd64 (0.23-1) ... Setting up libc-dev-bin (2.32-0ubuntu6) ... Setting up openssl (1.1.1f-1ubuntu5) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:amd64 (10.2.1-2ubuntu3) ... Setting up liblsan0:amd64 (10.2.1-2ubuntu3) ... Setting up cpp-10 (10.2.1-2ubuntu3) ... Setting up libitm1:amd64 (10.2.1-2ubuntu3) ... Setting up libtsan0:amd64 (10.2.1-2ubuntu3) ... Setting up libctf0:amd64 (2.35.50.20201218-1ubuntu3) ... Setting up libgcc-10-dev:amd64 (10.2.1-2ubuntu3) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up perl (5.32.0-6) ... Setting up libgssapi-krb5-2:amd64 (1.17-10ubuntu1) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up binutils-x86-64-linux-gnu (2.35.50.20201218-1ubuntu3) ... Setting up libtirpc3:amd64 (1.3.1-1) ... Setting up binutils (2.35.50.20201218-1ubuntu3) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up gcc-10 (10.2.1-2ubuntu3) ... Setting up libc6-dev:amd64 (2.32-0ubuntu6) ... Setting up libstdc++-10-dev:amd64 (10.2.1-2ubuntu3) ... Setting up g++-10 (10.2.1-2ubuntu3) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20769275 amd64 hirsute-proposed -c chroot:build-PACKAGEBUILD-20769275 --arch=amd64 --dist=hirsute-proposed --nolog -A libseqlib_1.1.2+dfsg-9ubuntu3.dsc Initiating build PACKAGEBUILD-20769275 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:57:35 UTC 2020 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lcy01-amd64-021.buildd +==============================================================================+ | libseqlib 1.1.2+dfsg-9ubuntu3 (amd64) Tue, 05 Jan 2021 12:34:53 +0000 | +==============================================================================+ Package: libseqlib Version: 1.1.2+dfsg-9ubuntu3 Source Version: 1.1.2+dfsg-9ubuntu3 Distribution: hirsute-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20769275/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libseqlib_1.1.2+dfsg-9ubuntu3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libseqlib-hFPEF0/libseqlib-1.1.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-hFPEF0' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-KbfUjF/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-KbfUjF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KbfUjF/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-KbfUjF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KbfUjF/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-KbfUjF/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (71.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-KbfUjF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14926 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev dpkg-deb: building package 'sbuild-build-depends-libseqlib-dummy' in '/<>/resolver-KbfUjF/apt_archive/sbuild-build-depends-libseqlib-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libseqlib-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-KbfUjF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KbfUjF/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-KbfUjF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KbfUjF/apt_archive ./ Sources [579 B] Get:5 copy:/<>/resolver-KbfUjF/apt_archive ./ Packages [660 B] Fetched 2202 B in 0s (98.8 kB/s) Reading package lists... Reading package lists... Install libseqlib build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism diffstat dwz file gettext gettext-base groff-base intltool-debian libaliased-perl libapt-pkg-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libbrotli1 libbwa-dev libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libcurl3-gnutls libcurl4-gnutls-dev libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libelf1 libemail-address-xs-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-stripnondeterminism-perl libfml-dev libfml0 libfont-ttf-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-html5-entities-perl libhts-dev libhts3 libhx509-5-heimdal libicu67 libimport-into-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libjsoncpp-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnghttp2-14 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libpipeline1 libproc-processtable-perl libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsigsegv2 libssh-4 libssw-dev libssw0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtool libtry-tiny-perl libtype-tiny-perl libuchardet0 libunicode-utf8-perl liburi-perl libvariable-magic-perl libwind0-heimdal libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop m4 mailcap man-db media-types mime-support patchutils pkg-config pkg-kde-tools po-debconf python3 python3-minimal python3.9 python3.9-minimal t1utils ucf unzip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libxml-parser-perl liblzma-doc libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl m4-doc apparmor less www-browser cdbs libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binfmt-support zip Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libpackage-stash-xs-perl publicsuffix libsasl2-modules libltdl-dev libref-util-perl libtype-tiny-xs-perl libwww-perl libxml-sax-expat-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism diffstat dwz file gettext gettext-base groff-base intltool-debian libaliased-perl libapt-pkg-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libbrotli1 libbwa-dev libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libcurl3-gnutls libcurl4-gnutls-dev libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libelf1 libemail-address-xs-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-stripnondeterminism-perl libfml-dev libfml0 libfont-ttf-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-html5-entities-perl libhts-dev libhts3 libhx509-5-heimdal libicu67 libimport-into-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libjsoncpp-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnghttp2-14 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libpipeline1 libproc-processtable-perl libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsigsegv2 libssh-4 libssw-dev libssw0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtool libtry-tiny-perl libtype-tiny-perl libuchardet0 libunicode-utf8-perl liburi-perl libvariable-magic-perl libwind0-heimdal libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop m4 mailcap man-db media-types mime-support patchutils pkg-config pkg-kde-tools po-debconf python3 python3-minimal python3.9 python3.9-minimal sbuild-build-depends-libseqlib-dummy t1utils ucf unzip zlib1g-dev 0 upgraded, 167 newly installed, 0 to remove and 0 not upgraded. Need to get 34.4 MB of archives. After this operation, 124 MB of additional disk space will be used. Get:1 copy:/<>/resolver-KbfUjF/apt_archive ./ sbuild-build-depends-libseqlib-dummy 0.invalid.0 [948 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.9-minimal amd64 3.9.1-1 [753 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main amd64 libexpat1 amd64 2.2.10-1 [76.0 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3.9-minimal amd64 3.9.1-1 [1909 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-minimal amd64 3.9.1-1 [24.0 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main amd64 media-types all 1.0.1ubuntu1 [10.9 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main amd64 mailcap all 3.67ubuntu1 [24.2 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.9-stdlib amd64 3.9.1-1 [1754 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3.9 amd64 3.9.1-1 [414 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpython3-stdlib amd64 3.9.1-1 [7244 B] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3 amd64 3.9.1-1 [48.8 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main amd64 bsdextrautils amd64 2.36.1-1ubuntu2 [77.3 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main amd64 groff-base amd64 1.22.4-5 [847 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main amd64 man-db amd64 2.9.3-2 [1117 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic-mgc amd64 1:5.39-3 [228 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic1 amd64 1:5.39-3 [80.6 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main amd64 file amd64 1:5.39-3 [23.7 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libelf1 amd64 0.182-2 [44.4 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libglib2.0-0 amd64 2.66.4-1 [1307 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main amd64 libicu67 amd64 67.1-5 [8618 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxml2 amd64 2.9.10+dfsg-6.3build1 [623 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main amd64 libyaml-0-2 amd64 0.2.2-1 [48.9 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main amd64 ucf all 3.0043 [56.1 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 gettext-base amd64 0.21-3 [40.0 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpsl5 amd64 0.21.0-1.1ubuntu1 [52.3 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libsigsegv2 amd64 2.12-3 [14.0 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main amd64 m4 amd64 1.4.18-4 [199 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main amd64 autoconf all 2.69-14 [293 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main amd64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 automake all 1:1.16.3-2ubuntu1 [552 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 autopoint all 0.21-3 [423 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/universe amd64 d-shlibs all 0.98 [9592 B] Get:36 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtool all 2.4.6-14 [161 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main amd64 dh-autoreconf all 19 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libdebhelper-perl all 13.3ubuntu4 [63.8 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:41 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main amd64 dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 dwz amd64 0.13+20201015-2 [173 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 gettext amd64 0.21-3 [824 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 debhelper all 13.3ubuntu4 [881 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main amd64 diffstat amd64 1.63-1 [27.2 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaliased-perl all 0.34-1.1 [13.3 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapt-pkg-perl amd64 0.1.36build4 [69.1 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-2 [41.8 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-2 [181 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main amd64 libb-hooks-op-check-perl amd64 0.22-1build3 [10.3 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu2 [14.5 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main amd64 libparams-classify-perl amd64 0.015-1build3 [21.1 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtry-tiny-perl all 0.30-1 [20.5 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:60 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7.7.0+dfsg-2 [96.5 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2ubuntu1 [14.7 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2ubuntu1 [49.3 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libldap-2.4-2 amd64 2.4.56+dfsg-1ubuntu1 [156 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnghttp2-14 amd64 1.42.0-1 [72.1 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build2 [55.0 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main amd64 libssh-4 amd64 0.9.5-1 [172 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcurl3-gnutls amd64 7.72.0-1ubuntu1 [236 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcurl4-gnutls-dev amd64 7.72.0-1ubuntu1 [323 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:88 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amd64 lintian all 2.104.0 [940 kB] Get:165 http://ftpmaster.internal/ubuntu hirsute/main amd64 pkg-config amd64 0.29.2-1ubuntu1 [46.2 kB] Get:166 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libjsoncpp-dev amd64 1.9.4-4 [22.0 kB] Get:167 http://ftpmaster.internal/ubuntu hirsute/universe amd64 pkg-kde-tools amd64 0.15.32ubuntu4 [96.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.4 MB in 1s (36.0 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... 14926 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.1-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.1-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.10-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.1-1_amd64.deb ... Unpacking python3.9-minimal (3.9.1-1) ... Setting up libpython3.9-minimal:amd64 (3.9.1-1) ... Setting up libexpat1:amd64 (2.2.10-1) ... Setting up python3.9-minimal (3.9.1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15219 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.1-1_amd64.deb ... Unpacking python3-minimal (3.9.1-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_1.0.1ubuntu1_all.deb ... 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Unpacking pkg-kde-tools (0.15.32ubuntu4) ... Selecting previously unselected package sbuild-build-depends-libseqlib-dummy. Preparing to unpack .../156-sbuild-build-depends-libseqlib-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-libseqlib-dummy (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36build4) ... Setting up media-types (1.0.1ubuntu1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.1ubuntu1) ... Setting up libunicode-utf8-perl (0.62-1build2) ... Setting up libmouse-perl (2.5.10-1build2) ... Setting up bsdextrautils (2.36.1-1ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libdata-messagepack-perl (1.00-4build1) ... Setting up libicu67:amd64 (67.1-5) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libclone-perl (0.45-1build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1build3) ... Setting up libglib2.0-0:amd64 (2.66.4-1) ... No schema files found: doing nothing. Setting up libcpanel-json-xs-perl (4.25-1build1) ... Setting up libdevel-size-perl (0.83-1build2) ... Setting up unzip (6.0-25ubuntu1) ... Setting up libdebhelper-perl (13.3ubuntu4) ... Setting up libbrotli1:amd64 (1.0.9-2build2) ... Setting up libyaml-libyaml-perl (0.82+repack-1build1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:amd64 (1.42.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-3) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1build4) ... Setting up file (1:5.39-3) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.018+ds-1build1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libfml0:amd64 (0.1-13) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2ubuntu1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up lzip (1.21-8) ... Setting up libsigsegv2:amd64 (2.12-3) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.63-1) ... 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Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl (0.59-2build1) ... Setting up libpath-tiny-perl (0.114-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3build6) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4build8) ... Setting up libdeflate-dev:amd64 (1.7-1) ... Setting up libperlio-gzip-perl (0.19-1build6) ... Setting up mailcap (3.67ubuntu1) ... Setting up libelf1:amd64 (0.182-2) ... Setting up libssw0:amd64 (1.1-11) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3build1) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1build1) ... Setting up libmarkdown2:amd64 (2.2.6-1ubuntu1) ... Setting up liburi-perl (5.05-1) ... Setting up libpython3.9-stdlib:amd64 (3.9.1-1) ... Setting up libpython3-stdlib:amd64 (3.9.1-1) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libemail-address-xs-perl (1.04-1build4) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libjsoncpp-dev:amd64 (1.9.4-4) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up gettext (0.21-3) ... Setting up libfml-dev:amd64 (0.1-13) ... Setting up mime-support (3.66) ... Setting up libssw-dev:amd64 (1.1-11) ... Setting up libtool (2.4.6-14) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libtype-tiny-perl (1.012000-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1build1) ... Setting up m4 (1.4.18-4) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu2) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up autoconf (2.69-14) ... Setting up libxml-libxml-perl (2.0134+dfsg-2build1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up python3.9 (3.9.1-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build3) ... Setting up python3 (3.9.1-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libldap-2.4-2:amd64 (2.4.56+dfsg-1ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.72.0-1ubuntu1) ... Setting up libcurl4-gnutls-dev:amd64 (7.72.0-1ubuntu1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libhts-dev:amd64 (1.11-4) ... Setting up lintian (2.104.0) ... Setting up pkg-kde-tools (0.15.32ubuntu4) ... Setting up debhelper (13.3ubuntu4) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-libseqlib-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-128-generic amd64 (x86_64) Toolchain package versions: binutils_2.35.50.20201218-1ubuntu3 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.1-2ubuntu3 gcc-10_10.2.1-2ubuntu3 libc6-dev_2.32-0ubuntu6 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 linux-libc-dev_5.8.0-34.37+21.04.1 Package versions: adduser_3.118ubuntu4 advancecomp_2.1-2.1build1 apt_2.1.15 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 binutils_2.35.50.20201218-1ubuntu3 binutils-common_2.35.50.20201218-1ubuntu3 binutils-x86-64-linux-gnu_2.35.50.20201218-1ubuntu3 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.1-2ubuntu3 d-shlibs_0.98 dash_0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 debconf_1.5.74 debhelper_13.3ubuntu4 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffstat_1.63-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu3 dpkg-dev_1.20.5ubuntu3 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.1-2ubuntu3 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.1-2ubuntu3 gcc-10-base_10.2.1-2ubuntu3 gettext_0.21-3 gettext-base_0.21-3 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libaliased-perl_0.34-1.1 libapparmor1_3.0.0-0ubuntu5 libapt-pkg-perl_0.1.36build4 libapt-pkg6.0_2.1.15 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.1-2ubuntu3 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7.1 libatomic1_10.2.1-2ubuntu3 libattr1_1:2.4.48-6 libaudit-common_1:2.8.5-3ubuntu3 libaudit1_1:2.8.5-3ubuntu3 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1build3 libbinutils_2.35.50.20201218-1ubuntu3 libblkid1_2.36.1-1ubuntu2 libbrotli1_1.0.9-2build2 libbwa-dev_0.7.17-5 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu6 libc-dev-bin_2.32-0ubuntu6 libc6_2.32-0ubuntu6 libc6-dev_2.32-0ubuntu6 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcapture-tiny-perl_0.48-1 libcc1-0_10.2.1-2ubuntu3 libclass-data-inheritable-perl_0.08-3 libclass-method-modifiers-perl_2.13-1 libclass-xsaccessor-perl_1.19-3build6 libclone-perl_0.45-1build1 libcom-err2_1.45.6-1ubuntu1 libconfig-tiny-perl_2.24-1 libcpanel-json-xs-perl_4.25-1build1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.50.20201218-1ubuntu3 libctf0_2.35.50.20201218-1ubuntu3 libcurl3-gnutls_7.72.0-1ubuntu1 libcurl4-gnutls-dev_7.72.0-1ubuntu1 libdata-dpath-perl_0.58-1 libdata-messagepack-perl_1.00-4build1 libdata-optlist-perl_0.110-1.1 libdata-validate-domain-perl_0.10-1.1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.3ubuntu4 libdeflate-dev_1.7-1 libdeflate0_1.7-1 libdevel-callchecker-perl_0.008-1ubuntu2 libdevel-size-perl_0.83-1build2 libdevel-stacktrace-perl_2.0400-1 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.5ubuntu3 libdynaloader-functions-perl_0.003-1.1 libelf1_0.182-2 libemail-address-xs-perl_1.04-1build4 libexception-class-perl_1.44-1 libexpat1_2.2.10-1 libexporter-tiny-perl_1.002002-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-basedir-perl_0.08-1 libfile-find-rule-perl_0.34-1 libfile-stripnondeterminism-perl_1.9.0-1 libfml-dev_0.1-13 libfml0_0.1-13 libfont-ttf-perl_1.06-1.1 libgcc-10-dev_10.2.1-2ubuntu3 libgcc-s1_10.2.1-2ubuntu3 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.4-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.1-2ubuntu3 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10ubuntu1 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.6-2 libhtml-html5-entities-perl_0.004-1.1 libhts-dev_1.11-4 libhts3_1.11-4 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libimport-into-perl_1.002005-1 libio-string-perl_1.08-3.1 libip4tc2_1.8.5-3ubuntu4 libipc-run3-perl_0.048-2 libipc-system-simple-perl_1.30-1 libisl22_0.22.1-1 libisl23_0.23-1 libiterator-perl_0.03+ds1-1.1 libiterator-util-perl_0.02+ds1-1.1 libitm1_10.2.1-2ubuntu3 libjson-c5_0.15-1 libjson-maybexs-perl_1.004003-1 libjsoncpp-dev_1.9.4-4 libjsoncpp24_1.9.4-4 libk5crypto3_1.17-10ubuntu1 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.17-10ubuntu1 libkrb5support0_1.17-10ubuntu1 libldap-2.4-2_2.4.56+dfsg-1ubuntu1 liblist-compare-perl_0.55-1 liblist-moreutils-perl_0.430-2 liblist-moreutils-xs-perl_0.430-2 liblist-utilsby-perl_0.11-1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.2.1-2ubuntu3 liblz4-1_1.9.3-0ubuntu1 liblzma-dev_5.2.4-1ubuntu1 liblzma5_5.2.4-1ubuntu1 liblzo2-2_2.10-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmarkdown2_2.2.6-1ubuntu1 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-perl_0.016-1 libmoo-perl_2.004004-1 libmoox-aliases-perl_0.001006-1.1 libmount1_2.36.1-1ubuntu2 libmouse-perl_2.5.10-1build2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libnamespace-clean-perl_0.27-1 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnet-domain-tld-perl_1.75-1.1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libnumber-compare-perl_0.03-1.1 libp11-kit0_0.23.22-1 libpackage-stash-perl_0.39-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libparams-classify-perl_0.015-1build3 libparams-util-perl_1.102-1build1 libpath-tiny-perl_0.114-2 libpcre2-8-0_10.35-2ubuntu1 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-6 libperlio-gzip-perl_0.19-1build6 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libproc-processtable-perl_0.59-2build1 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1ubuntu1 libpython3-stdlib_3.9.1-1 libpython3.9-minimal_3.9.1-1 libpython3.9-stdlib_3.9.1-1 libquadmath0_10.2.1-2ubuntu3 libreadline8_8.1-1 libroken18-heimdal_7.7.0+dfsg-2 librole-tiny-perl_2.001004-1 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.4.3-1ubuntu6 libselinux1_3.1-2build2 libsemanage-common_3.1-1build2 libsemanage1_3.1-1build2 libsepol1_3.1-1 libsereal-decoder-perl_4.018+ds-1build1 libsereal-encoder-perl_4.018+ds-1build1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-1ubuntu2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.5-1 libssl1.1_1.1.1f-1ubuntu5 libssw-dev_1.1-11 libssw0_1.1-11 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.987-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1build3 libsub-install-perl_0.928-1.1 libsub-name-perl_0.26-1build1 libsub-override-perl_0.09-2 libsub-quote-perl_2.006006-1 libsystemd0_247.1-4ubuntu1 libtasn1-6_4.16.0-2 libtext-glob-perl_0.11-1 libtext-levenshteinxs-perl_0.03-4build8 libtext-markdown-discount-perl_0.12-1build1 libtext-xslate-perl_3.5.8-1build2 libtime-duration-perl_1.21-1 libtime-moment-perl_0.44-1build4 libtimedate-perl_2.3300-1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-14 libtry-tiny-perl_0.30-1 libtsan0_10.2.1-2ubuntu3 libtype-tiny-perl_1.012000-1 libubsan1_10.2.1-2ubuntu3 libuchardet0_0.0.7-1 libudev1_247.1-4ubuntu1 libunicode-utf8-perl_0.62-1build2 libunistring2_0.9.10-4 liburi-perl_5.05-1 libuuid1_2.36.1-1ubuntu2 libvariable-magic-perl_0.62-1build3 libwind0-heimdal_7.7.0+dfsg-2 libxml-libxml-perl_2.0134+dfsg-2build1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml2_2.9.10+dfsg-6.3build1 libxxhash0_0.8.0-1 libyaml-0-2_0.2.2-1 libyaml-libyaml-perl_0.82+repack-1build1 libzstd1_1.4.8+dfsg-1 lintian_2.104.0 linux-libc-dev_5.8.0-34.37+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu7 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 lzip_1.21-8 lzop_1.04-2 m4_1.4.18-4 mailcap_3.67ubuntu1 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1ubuntu1 mime-support_3.66 mount_2.36.1-1ubuntu2 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu7 patch_2.7.6-6 patchutils_0.4.2-1 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkg-kde-tools_0.15.32ubuntu4 pkgbinarymangler_146 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.9.1-1 python3-minimal_3.9.1-1 python3.9_3.9.1-1 python3.9-minimal_3.9.1-1 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libseqlib-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 t1utils_1.41-4 tar_1.32+dfsg-1 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 ucf_3.0043 unzip_6.0-25ubuntu1 util-linux_2.36.1-1ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Jan 5 12:32:10 2021 UTC gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libseqlib_1.1.2+dfsg-9ubuntu3.dsc dpkg-source: info: extracting libseqlib in /<>/libseqlib-1.1.2+dfsg dpkg-source: info: unpacking libseqlib_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking libseqlib_1.1.2+dfsg-9ubuntu3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libjsoncpp_1_8_4_compat dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying adapt_to_debian_fermi-lite.patch dpkg-source: info: applying fix_fermi-lite_usage.patch dpkg-source: info: applying fix_htslib_usage.patch dpkg-source: info: applying fml_include_path.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying use_debian_packaged_jsoncpp.patch dpkg-source: info: applying use_debian_packaged_ssw.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying fix_private_htslib_usage.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20769275 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20769275 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20769275 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libseqlib dpkg-buildpackage: info: source version 1.1.2+dfsg-9ubuntu3 dpkg-buildpackage: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with pkgkde_symbolshelper dh_clean debian/rules binary dh binary --with pkgkde_symbolshelper dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:17: installing './compile' configure.ac:19: installing './config.guess' configure.ac:19: installing './config.sub' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gzopen... -lz checking for library containing clock_gettime... none required checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for htslib... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/seqtools/Makefile config.status: creating libseqlib.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j4 make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make all-recursive make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg' Making all in src make[3]: Entering directory '/<>/libseqlib-1.1.2+dfsg/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-ReadFilter.lo `test -f 'ReadFilter.cpp' || echo './'`ReadFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-SeqPlot.lo `test -f 'SeqPlot.cpp' || echo './'`SeqPlot.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -fPIC -DPIC -o .libs/libseqlib_la-BFC.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1 ReadFilter.cpp: In constructor ‘SeqLib::Filter::ReadFilterCollection::ReadFilterCollection(const string&, const SeqLib::BamHeader&)’: ReadFilter.cpp:181:18: warning: ‘Reader’ is deprecated: Use CharReader and CharReaderBuilder instead. [-Wdeprecated-declarations] 181 | Json::Reader reader; | ^~~~~~ In file included from /usr/include/jsoncpp/json/json.h:11, from ../SeqLib/ReadFilter.h:10, from ReadFilter.cpp:1: /usr/include/jsoncpp/json/reader.h:37:63: note: declared here 37 | "Use CharReader and CharReaderBuilder instead.") JSON_API Reader { | ^~~~~~ ReadFilter.cpp:181:18: warning: ‘Json::Reader::Reader()’ is deprecated: Use CharReader and CharReaderBuilder instead [-Wdeprecated-declarations] 181 | Json::Reader reader; | ^~~~~~ In file included from /usr/include/jsoncpp/json/json.h:11, from ../SeqLib/ReadFilter.h:10, from ReadFilter.cpp:1: /usr/include/jsoncpp/json/reader.h:56:3: note: declared here 56 | Reader(); | ^~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-GenomicRegion.lo `test -f 'GenomicRegion.cpp' || echo './'`GenomicRegion.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-RefGenome.lo `test -f 'RefGenome.cpp' || echo './'`RefGenome.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -o libseqlib_la-RefGenome.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamWriter.lo `test -f 'BamWriter.cpp' || echo './'`BamWriter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -lfml `/usr/bin/pkg-config --libs htslib` `/usr/bin/pkg-config --libs jsoncpp` -lssw -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/x86_64-linux-gnu libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo -lz -pthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lfml -lhts -ljsoncpp -lssw -lz -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libseqlib.so.1 -o .libs/libseqlib.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libseqlib.so.1" && ln -s "libseqlib.so.1.0.0" "libseqlib.so.1") libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.1.0.0" "libseqlib.so") libtool: link: ar cr .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o libtool: link: ranlib .libs/libseqlib.a libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" ) make[3]: Leaving directory '/<>/libseqlib-1.1.2+dfsg/src' make[3]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make[3]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' dh_auto_test make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' Making check in src make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg/src' make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/<>/libseqlib-1.1.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' echo "mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin" mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' dh_install # Trick to get also headers moved by d-shlibmove cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/SeqLib usr/include \ --override s/libfml0-dev/libfml-dev/ \ --override s/libssw0-dev/libssw-dev/ \ src/.libs/libseqlib.so Library package automatic movement utility --> libfml-dev package exists. --> libhts-dev package exists. --> libjsoncpp-dev package exists. --> libssw-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libseqlib-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libseqlib1/usr/lib/x86_64-linux-gnu mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/x86_64-linux-gnu mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/x86_64-linux-gnu mv /<>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1 debian/libseqlib1/usr/lib/x86_64-linux-gnu mv /<>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1.0.0 debian/libseqlib1/usr/lib/x86_64-linux-gnu PKGDEV=libseqlib-dev PKGSHL=libseqlib1 install -d -m 755 debian/libseqlib-dev/usr/include mv debian/SeqLib debian/libseqlib-dev/usr/include mkdir -p /<>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv libseqlib.pc /<>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: debian/libseqlib1/DEBIAN/symbols doesn't match completely debian/libseqlib1.symbols --- debian/libseqlib1.symbols (libseqlib1_1.1.2+dfsg-9ubuntu3_amd64) +++ dpkg-gensymbols0MDkRU 2021-01-05 12:36:05.688003262 +0000 @@ -65,7 +65,7 @@ (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CreateTreeMapEv@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE14CoordinateSortEv@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE25MergeOverlappingIntervalsEv@Base 1.1.2 - (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu3# (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1Ev@Base 1.1.2 (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2 @@ -253,12 +253,12 @@ (optional=templinst)_ZNKSt5ctypeIcE8do_widenEc@Base 1.1.2 (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.1.2 (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.1.2 - (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu3# (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashEmRKm@Base 1.1.2 (optional=templinst|arch=kfreebsd-amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE10_M_emplaceIJS6_IS5_iEEEES6_INSA_14_Node_iteratorIS8_Lb0ELb1EEEbESt17integral_constantIbLb1EEDpOT_@Base 1.1.2 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(optional=templinst)_ZNSt12_Destroy_auxILb0EE9__destroyIPN12aho_corasick7ahoemitIcEEEEvT_S6_@Base 1.1.2 (optional=templinst)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev@Base 1.1.2 (optional=templinst)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev@Base 1.1.2 (optional=templinst)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED1Ev@Base 1.1.2 @@ -404,8 +404,8 @@ (optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.2 (optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.2 (optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.2 - (optional=templinst)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.2 - (optional=templinst)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu3# (optional=templinst)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.2 +#MISSING: 1.1.2+dfsg-9ubuntu3# (optional=templinst)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.2 (optional=templinst)_ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 1.1.2 (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2 (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2 dh_shlibdeps -a dpkg-shlibdeps: warning: symbol bwa_idx_destroy used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol kseq_init used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol nst_nt4_table used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwa_fill_scmat used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_gen_cnt_table used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol mem_reg2aln used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol err_xopen_core used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol kseq_read used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol err_fclose used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_dump_sa used by debian/libseqlib1/usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing libseqlib1 (in debian/libseqlib1); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib-dev (in debian/libseqlib-dev); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib1-dbgsym (in debian/.debhelper/libseqlib1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libseqlib1/dbgsym-root/DEBIAN/control, package libseqlib1-dbgsym, directory debian/.debhelper/libseqlib1/dbgsym-root dpkg-deb: building package 'libseqlib1-dbgsym' in 'debian/.debhelper/scratch-space/build-libseqlib1/libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.deb'. pkgstripfiles: processing control file: debian/libseqlib1/DEBIAN/control, package libseqlib1, directory debian/libseqlib1 pkgstripfiles: Truncating usr/share/doc/libseqlib1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib1' in '../libseqlib1_1.1.2+dfsg-9ubuntu3_amd64.deb'. Renaming libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.deb to libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libseqlib-dev/DEBIAN/control, package libseqlib-dev, directory debian/libseqlib-dev Searching for duplicated docs in dependency libseqlib1... symlinking changelog.Debian.gz in libseqlib-dev to file in libseqlib1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.1.2+dfsg-9ubuntu3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../libseqlib_1.1.2+dfsg-9ubuntu3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-01-05T12:36:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libseqlib_1.1.2+dfsg-9ubuntu3_amd64.changes: -------------------------------------------- Format: 1.8 Date: Tue, 05 Jan 2021 12:01:35 +0100 Source: libseqlib Binary: libseqlib-dev libseqlib1 Architecture: amd64 Version: 1.1.2+dfsg-9ubuntu3 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Gianfranco Costamagna Description: libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat libseqlib1 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat Changes: libseqlib (1.1.2+dfsg-9ubuntu3) hirsute; urgency=medium . * Fixup symbols on ppc64el Checksums-Sha1: cbcaf691bec8d67e1e23a5be20cbc954973398ec 165608 libseqlib-dev_1.1.2+dfsg-9ubuntu3_amd64.deb 98d8a5e329309ccac8b3b1728d67ea0cc72dd5d0 1645172 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.ddeb 5ee35d9419f51c09a42be2959fdbc56ad9f1e99f 117948 libseqlib1_1.1.2+dfsg-9ubuntu3_amd64.deb 68c9c3748a0ec7c416f203898b49ede0db01ed8b 11430 libseqlib_1.1.2+dfsg-9ubuntu3_amd64.buildinfo Checksums-Sha256: 62de02174fb7dab572b60978cabe225bfa10afba6e716a00d11b3e15b68568e9 165608 libseqlib-dev_1.1.2+dfsg-9ubuntu3_amd64.deb e18760b6e33c1adca8f3e1246380c7a3844a121d23e4616002ff3dfd0a0b359a 1645172 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.ddeb 1d6868423798fb6fb6e0bd611f8e5f1ac0ad385ec2798f3c24ed540ff9f21674 117948 libseqlib1_1.1.2+dfsg-9ubuntu3_amd64.deb 087d1ccf8da753734437d0f762201c23d3ed6ff9145d677ee3a473a239e25990 11430 libseqlib_1.1.2+dfsg-9ubuntu3_amd64.buildinfo Files: 0a79219c1560608e1cf3a57345313f53 165608 libdevel optional libseqlib-dev_1.1.2+dfsg-9ubuntu3_amd64.deb f7731c402e22e61d65a450f91eb5600b 1645172 debug optional libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.ddeb d55ef652e785af1e8d42ad18bc98d170 117948 libs optional libseqlib1_1.1.2+dfsg-9ubuntu3_amd64.deb 6806ed83efd6a57c44ae2776f2bd4bf4 11430 science optional libseqlib_1.1.2+dfsg-9ubuntu3_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libseqlib Binary: libseqlib-dev libseqlib1 libseqlib1-dbgsym Architecture: amd64 Version: 1.1.2+dfsg-9ubuntu3 Checksums-Md5: 0a79219c1560608e1cf3a57345313f53 165608 libseqlib-dev_1.1.2+dfsg-9ubuntu3_amd64.deb f7731c402e22e61d65a450f91eb5600b 1645172 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.ddeb d55ef652e785af1e8d42ad18bc98d170 117948 libseqlib1_1.1.2+dfsg-9ubuntu3_amd64.deb Checksums-Sha1: cbcaf691bec8d67e1e23a5be20cbc954973398ec 165608 libseqlib-dev_1.1.2+dfsg-9ubuntu3_amd64.deb 98d8a5e329309ccac8b3b1728d67ea0cc72dd5d0 1645172 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.ddeb 5ee35d9419f51c09a42be2959fdbc56ad9f1e99f 117948 libseqlib1_1.1.2+dfsg-9ubuntu3_amd64.deb Checksums-Sha256: 62de02174fb7dab572b60978cabe225bfa10afba6e716a00d11b3e15b68568e9 165608 libseqlib-dev_1.1.2+dfsg-9ubuntu3_amd64.deb e18760b6e33c1adca8f3e1246380c7a3844a121d23e4616002ff3dfd0a0b359a 1645172 libseqlib1-dbgsym_1.1.2+dfsg-9ubuntu3_amd64.ddeb 1d6868423798fb6fb6e0bd611f8e5f1ac0ad385ec2798f3c24ed540ff9f21674 117948 libseqlib1_1.1.2+dfsg-9ubuntu3_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Tue, 05 Jan 2021 12:36:14 +0000 Build-Path: /<>/libseqlib-1.1.2+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu4), apt (= 2.1.15), autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3), autotools-dev (= 20180224.1+nmu1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1-1ubuntu1), binutils (= 2.35.50.20201218-1ubuntu3), binutils-common (= 2.35.50.20201218-1ubuntu3), binutils-x86-64-linux-gnu (= 2.35.50.20201218-1ubuntu3), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.1-2ubuntu3), d-shlibs (= 0.98), dash (= 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1), debconf (= 1.5.74), debhelper (= 13.3ubuntu4), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffstat (= 1.63-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu3), dpkg-dev (= 1.20.5ubuntu3), dwz (= 0.13+20201015-2), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.1-2ubuntu3), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.1-2ubuntu3), gcc-10-base (= 10.2.1-2ubuntu3), gettext (= 0.21-3), gettext-base (= 0.21-3), gpg (= 2.2.20-1ubuntu1), gpgconf (= 2.2.20-1ubuntu1), gpgv (= 2.2.20-1ubuntu1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-9), libaliased-perl (= 0.34-1.1), libapt-pkg-perl (= 0.1.36build4), libapt-pkg6.0 (= 2.1.15), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-2ubuntu3), libasn1-8-heimdal (= 7.7.0+dfsg-2), libassuan0 (= 2.5.3-7.1), libatomic1 (= 10.2.1-2ubuntu3), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:2.8.5-3ubuntu3), libaudit1 (= 1:2.8.5-3ubuntu3), libb-hooks-endofscope-perl (= 0.24-1.1), libb-hooks-op-check-perl (= 0.22-1build3), libbinutils (= 2.35.50.20201218-1ubuntu3), libblkid1 (= 2.36.1-1ubuntu2), libbrotli1 (= 1.0.9-2build2), libbwa-dev (= 0.7.17-5), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu6), libc-dev-bin (= 2.32-0ubuntu6), libc6 (= 2.32-0ubuntu6), libc6-dev (= 2.32-0ubuntu6), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1), libcapture-tiny-perl (= 0.48-1), libcc1-0 (= 10.2.1-2ubuntu3), libclass-data-inheritable-perl (= 0.08-3), libclass-method-modifiers-perl (= 2.13-1), libclass-xsaccessor-perl (= 1.19-3build6), libclone-perl (= 0.45-1build1), libcom-err2 (= 1.45.6-1ubuntu1), libconfig-tiny-perl (= 2.24-1), libcpanel-json-xs-perl (= 4.25-1build1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.50.20201218-1ubuntu3), libctf0 (= 2.35.50.20201218-1ubuntu3), libcurl3-gnutls (= 7.72.0-1ubuntu1), libcurl4-gnutls-dev (= 7.72.0-1ubuntu1), libdata-dpath-perl (= 0.58-1), libdata-messagepack-perl (= 1.00-4build1), libdata-optlist-perl (= 0.110-1.1), libdata-validate-domain-perl (= 0.10-1.1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.255ubuntu1), libdebhelper-perl (= 13.3ubuntu4), libdeflate-dev (= 1.7-1), libdeflate0 (= 1.7-1), libdevel-callchecker-perl (= 0.008-1ubuntu2), libdevel-size-perl (= 0.83-1build2), libdevel-stacktrace-perl (= 2.0400-1), libdpkg-perl (= 1.20.5ubuntu3), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.182-2), libemail-address-xs-perl (= 1.04-1build4), libexception-class-perl (= 1.44-1), libexpat1 (= 2.2.10-1), libexporter-tiny-perl (= 1.002002-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-basedir-perl (= 0.08-1), libfile-find-rule-perl (= 0.34-1), libfile-stripnondeterminism-perl (= 1.9.0-1), libfml-dev (= 0.1-13), libfml0 (= 0.1-13), libfont-ttf-perl (= 1.06-1.1), libgcc-10-dev (= 10.2.1-2ubuntu3), libgcc-s1 (= 10.2.1-2ubuntu3), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.4-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.1-2ubuntu3), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10ubuntu1), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhtml-html5-entities-perl (= 0.004-1.1), libhts-dev (= 1.11-4), libhts3 (= 1.11-4), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu67 (= 67.1-5), libidn2-0 (= 2.3.0-4), libimport-into-perl (= 1.002005-1), libio-string-perl (= 1.08-3.1), libipc-run3-perl (= 0.048-2), libipc-system-simple-perl (= 1.30-1), libisl23 (= 0.23-1), libiterator-perl (= 0.03+ds1-1.1), libiterator-util-perl (= 0.02+ds1-1.1), libitm1 (= 10.2.1-2ubuntu3), libjson-maybexs-perl (= 1.004003-1), libjsoncpp-dev (= 1.9.4-4), libjsoncpp24 (= 1.9.4-4), libk5crypto3 (= 1.17-10ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10ubuntu1), libkrb5support0 (= 1.17-10ubuntu1), libldap-2.4-2 (= 2.4.56+dfsg-1ubuntu1), liblist-compare-perl (= 0.55-1), liblist-moreutils-perl (= 0.430-2), liblist-moreutils-xs-perl (= 0.430-2), liblist-utilsby-perl (= 0.11-1), liblsan0 (= 10.2.1-2ubuntu3), liblz4-1 (= 1.9.3-0ubuntu1), liblzma-dev (= 5.2.4-1ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), liblzo2-2 (= 2.10-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmarkdown2 (= 2.2.6-1ubuntu1), libmodule-implementation-perl (= 0.09-1.1), libmodule-runtime-perl (= 0.016-1), libmoo-perl (= 2.004004-1), libmoox-aliases-perl (= 0.001006-1.1), libmount1 (= 2.36.1-1ubuntu2), libmouse-perl (= 2.5.10-1build2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnamespace-clean-perl (= 0.27-1), libncursesw6 (= 6.2+20201114-2), libnet-domain-tld-perl (= 1.75-1.1), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.42.0-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libnumber-compare-perl (= 0.03-1.1), libp11-kit0 (= 0.23.22-1), libpackage-stash-perl (= 0.39-1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libparams-classify-perl (= 0.015-1build3), libparams-util-perl (= 1.102-1build1), libpath-tiny-perl (= 0.114-2), libpcre2-8-0 (= 10.35-2ubuntu1), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-6), libperlio-gzip-perl (= 0.19-1build6), libpipeline1 (= 1.5.3-1), libproc-processtable-perl (= 0.59-2build1), libpsl5 (= 0.21.0-1.1ubuntu1), libpython3-stdlib (= 3.9.1-1), libpython3.9-minimal (= 3.9.1-1), libpython3.9-stdlib (= 3.9.1-1), libquadmath0 (= 10.2.1-2ubuntu3), libreadline8 (= 8.1-1), libroken18-heimdal (= 7.7.0+dfsg-2), librole-tiny-perl (= 2.001004-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu6), libselinux1 (= 3.1-2build2), libsemanage-common (= 3.1-1build2), libsemanage1 (= 3.1-1build2), libsepol1 (= 3.1-1), libsereal-decoder-perl (= 4.018+ds-1build1), libsereal-encoder-perl (= 4.018+ds-1build1), libsigsegv2 (= 2.12-3), libsmartcols1 (= 2.36.1-1ubuntu2), libsqlite3-0 (= 3.34.0-1), libssh-4 (= 0.9.5-1), libssl1.1 (= 1.1.1f-1ubuntu5), libssw-dev (= 1.1-11), libssw0 (= 1.1-11), libstdc++-10-dev (= 10.2.1-2ubuntu3), libstdc++6 (= 10.2.1-2ubuntu3), libstrictures-perl (= 2.000006-1), libsub-exporter-perl (= 0.987-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build3), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build1), libsub-override-perl (= 0.09-2), libsub-quote-perl (= 2.006006-1), libsystemd0 (= 247.1-4ubuntu1), libtasn1-6 (= 4.16.0-2), libtext-glob-perl (= 0.11-1), libtext-levenshteinxs-perl (= 0.03-4build8), libtext-markdown-discount-perl (= 0.12-1build1), libtext-xslate-perl (= 3.5.8-1build2), libtime-duration-perl (= 1.21-1), libtime-moment-perl (= 0.44-1build4), libtimedate-perl (= 2.3300-1), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-14), libtry-tiny-perl (= 0.30-1), libtsan0 (= 10.2.1-2ubuntu3), libtype-tiny-perl (= 1.012000-1), libubsan1 (= 10.2.1-2ubuntu3), libuchardet0 (= 0.0.7-1), libudev1 (= 247.1-4ubuntu1), libunicode-utf8-perl (= 0.62-1build2), libunistring2 (= 0.9.10-4), liburi-perl (= 5.05-1), libuuid1 (= 2.36.1-1ubuntu2), libvariable-magic-perl (= 0.62-1build3), libwind0-heimdal (= 7.7.0+dfsg-2), libxml-libxml-perl (= 2.0134+dfsg-2build1), libxml-namespacesupport-perl (= 1.12-1.1), libxml-sax-base-perl (= 1.09-1.1), libxml-sax-perl (= 1.02+dfsg-1), libxml2 (= 2.9.10+dfsg-6.3build1), libxxhash0 (= 0.8.0-1), libyaml-0-2 (= 0.2.2-1), libyaml-libyaml-perl (= 0.82+repack-1build1), libzstd1 (= 1.4.8+dfsg-1), lintian (= 2.104.0), linux-libc-dev (= 5.8.0-34.37+21.04.1), login (= 1:4.8.1-1ubuntu7), lsb-base (= 11.1.0ubuntu2), lzip (= 1.21-8), lzop (= 1.04-2), m4 (= 1.4.18-4), mailcap (= 3.67ubuntu1), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), media-types (= 1.0.1ubuntu1), mime-support (= 3.66), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), passwd (= 1:4.8.1-1ubuntu7), patch (= 2.7.6-6), patchutils (= 0.4.2-1), perl (= 5.32.0-6), perl-base (= 5.32.0-6), perl-modules-5.32 (= 5.32.0-6), pkg-config (= 0.29.2-1ubuntu1), pkg-kde-tools (= 0.15.32ubuntu4), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.1-1), python3-minimal (= 3.9.1-1), python3.9 (= 3.9.1-1), python3.9-minimal (= 3.9.1-1), readline-common (= 8.1-1), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), t1utils (= 1.41-4), tar (= 1.32+dfsg-1), tzdata (= 2020d-1ubuntu1), ubuntu-keyring (= 2020.06.17.1), ucf (= 3.0043), unzip (= 6.0-25ubuntu1), util-linux (= 2.36.1-1ubuntu2), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609844495" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libseqlib-dev_1.1.2+dfsg-9ubuntu3_amd64.deb ------------------------------------------- new Debian package, version 2.0. size 165608 bytes: control archive=1772 bytes. 1426 bytes, 26 lines control 1657 bytes, 24 lines md5sums Package: libseqlib-dev Source: libseqlib Version: 1.1.2+dfsg-9ubuntu3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 912 Depends: libseqlib1 (= 1.1.2+dfsg-9ubuntu3), libfml-dev, libhts-dev, libjsoncpp-dev, libssw-dev, zlib1g-dev, libbwa-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev) C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. . This package contains the header files and static library. drwxr-xr-x root/root 0 2021-01-05 11:01 ./ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/include/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/include/SeqLib/ -rw-r--r-- root/root 3874 2021-01-05 11:01 ./usr/include/SeqLib/BFC.h -rw-r--r-- root/root 6285 2017-05-12 20:31 ./usr/include/SeqLib/BWAWrapper.h -rw-r--r-- root/root 3605 2021-01-05 11:01 ./usr/include/SeqLib/BamHeader.h -rw-r--r-- root/root 8503 2017-05-12 20:31 ./usr/include/SeqLib/BamReader.h -rw-r--r-- root/root 31497 2021-01-05 11:01 ./usr/include/SeqLib/BamRecord.h -rw-r--r-- root/root 1979 2021-01-05 11:01 ./usr/include/SeqLib/BamWalker.h -rw-r--r-- root/root 3096 2017-05-12 20:31 ./usr/include/SeqLib/BamWriter.h -rw-r--r-- root/root 1139 2017-05-12 20:31 ./usr/include/SeqLib/FastqReader.h -rw-r--r-- root/root 4022 2021-01-05 11:01 ./usr/include/SeqLib/FermiAssembler.h -rw-r--r-- root/root 6129 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegion.h -rw-r--r-- root/root 19701 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegionCollection.cpp -rw-r--r-- root/root 11804 2017-05-12 20:31 ./usr/include/SeqLib/GenomicRegionCollection.h -rw-r--r-- root/root 7320 2017-05-12 20:31 ./usr/include/SeqLib/IntervalTree.h -rw-r--r-- root/root 17397 2017-05-12 20:31 ./usr/include/SeqLib/ReadFilter.h -rw-r--r-- root/root 1387 2021-01-05 11:01 ./usr/include/SeqLib/RefGenome.h -rw-r--r-- root/root 3832 2017-05-12 20:31 ./usr/include/SeqLib/SeqLibCommon.h -rw-r--r-- root/root 4176 2017-05-12 20:31 ./usr/include/SeqLib/SeqLibUtils.h -rw-r--r-- root/root 2455 2017-05-12 20:31 ./usr/include/SeqLib/SeqPlot.h -rw-r--r-- root/root 1932 2017-05-12 20:31 ./usr/include/SeqLib/UnalignedSequence.h -rw-r--r-- root/root 17078 2017-05-12 20:31 ./usr/include/SeqLib/aho_corasick.hpp drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 745178 2021-01-05 11:01 ./usr/lib/x86_64-linux-gnu/libseqlib.a lrwxrwxrwx root/root 0 2021-01-05 11:01 ./usr/lib/x86_64-linux-gnu/libseqlib.so -> libseqlib.so.1.0.0 drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 301 2021-01-05 11:01 ./usr/lib/x86_64-linux-gnu/pkgconfig/libseqlib.pc drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/doc/libseqlib-dev/ lrwxrwxrwx root/root 0 2021-01-05 11:01 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz -> ../libseqlib1/changelog.Debian.gz -rw-r--r-- root/root 2441 2020-10-24 15:20 ./usr/share/doc/libseqlib-dev/copyright drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 145 2020-02-15 16:39 ./usr/share/lintian/overrides/libseqlib-dev libseqlib1_1.1.2+dfsg-9ubuntu3_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 117948 bytes: control archive=5468 bytes. 1395 bytes, 24 lines control 226 bytes, 3 lines md5sums 39 bytes, 1 lines shlibs 40898 bytes, 429 lines symbols 72 bytes, 2 lines triggers Package: libseqlib1 Source: libseqlib Version: 1.1.2+dfsg-9ubuntu3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 387 Depends: libc6 (>= 2.14), libfml0 (>= 0.1), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libjsoncpp24 (>= 1.9.4), libssw0 (>= 1.1), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. drwxr-xr-x root/root 0 2021-01-05 11:01 ./ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2021-01-05 11:01 ./usr/lib/x86_64-linux-gnu/libseqlib.so.1 -> libseqlib.so.1.0.0 -rw-r--r-- root/root 338080 2021-01-05 11:01 ./usr/lib/x86_64-linux-gnu/libseqlib.so.1.0.0 drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-05 11:01 ./usr/share/doc/libseqlib1/ -rw-r--r-- root/root 1120 2021-01-05 11:01 ./usr/share/doc/libseqlib1/changelog.Debian.gz -rw-r--r-- root/root 2441 2020-10-24 15:20 ./usr/share/doc/libseqlib1/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 50 Distribution: hirsute-proposed Host Architecture: amd64 Install-Time: 31 Job: libseqlib_1.1.2+dfsg-9ubuntu3.dsc Machine Architecture: amd64 Package: libseqlib Package-Time: 82 Source-Version: 1.1.2+dfsg-9ubuntu3 Space: n/a Status: successful Version: 1.1.2+dfsg-9ubuntu3 -------------------------------------------------------------------------------- Finished at 2021-01-05T12:36:15Z Build needed 00:01:22, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20769275 Scanning for processes to kill in build PACKAGEBUILD-20769275