https://launchpad.net/ubuntu/+source/libseqlib/1.2.0+dfsg-11/+build/27189803 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-arm64-009 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 15 Dec 05:13:09 ntpdate[1905]: adjust time server 10.211.37.1 offset -0.002209 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27189803 --image-type chroot /home/buildd/filecache-default/0aaa0d191106d33e51979a9c6a062e50b7f5b3b2 Creating target for build PACKAGEBUILD-27189803 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27189803 Starting target for build PACKAGEBUILD-27189803 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27189803 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27189803 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27189803 Updating target for build PACKAGEBUILD-27189803 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 Packages [1387 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 Packages [15.2 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6026 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [83.9 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [33.1 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [1100 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [395 kB] Fetched 25.2 MB in 3s (8082 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-aarch64-linux-gnu binutils-common bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 134 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 7716 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.38-3ubuntu1 [1573 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.38-3ubuntu1 [19.4 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1 [201 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libgssapi-krb5-2 arm64 1.20.1-5build1 [139 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5-3 arm64 1.20.1-5build1 [347 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libk5crypto3 arm64 1.20.1-5build1 [85.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5support0 arm64 1.20.1-5build1 [33.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libssl3 arm64 3.0.10-1ubuntu3 [1752 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc3 arm64 1.3.4+ds-1 [82.6 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl2 arm64 1.3.0-3 [40.9 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-libc-dev arm64 6.6.0-14.14 [1554 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 13.2.0-8ubuntu1 [49.6 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgprofng0 arm64 2.41.50.20231214-1ubuntu1 [766 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libctf0 arm64 2.41.50.20231214-1ubuntu1 [80.0 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libctf-nobfd0 arm64 2.41.50.20231214-1ubuntu1 [83.0 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.41.50.20231214-1ubuntu1 [3564 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libbinutils arm64 2.41.50.20231214-1ubuntu1 [684 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils-common arm64 2.41.50.20231214-1ubuntu1 [258 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils arm64 2.41.50.20231214-1ubuntu1 [7762 B] Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-base arm64 13.2.0-8ubuntu1 [44.8 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-s1 arm64 13.2.0-8ubuntu1 [46.5 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 13.2.0-8ubuntu1 [139 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 13.2.0-8ubuntu1 [27.8 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 13.2.0-8ubuntu1 [11.6 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 13.2.0-8ubuntu1 [2751 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 13.2.0-8ubuntu1 [1185 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 13.2.0-8ubuntu1 [2631 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 13.2.0-8ubuntu1 [1090 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 13.2.0-8ubuntu1 [1243 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-8ubuntu1 [10.9 MB] Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-8ubuntu1 [2349 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-8ubuntu1 [2463 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-8ubuntu1 [19.1 MB] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-8ubuntu1 [9585 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++6 arm64 13.2.0-8ubuntu1 [733 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g arm64 1:1.3.dfsg-3ubuntu1 [61.6 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsframe1 arm64 2.41.50.20231214-1ubuntu1 [13.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libzstd1 arm64 1.5.5+dfsg2-2 [270 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.38-3ubuntu1 [2740 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 base-files arm64 13ubuntu5 [73.8 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 debianutils arm64 5.14 [89.3 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 bash arm64 5.2.21-2ubuntu1 [777 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 bsdutils arm64 1:2.39.2-6ubuntu1 [96.9 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 coreutils arm64 9.4-2ubuntu1 [1378 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 diffutils arm64 1:3.10-1 [174 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma5 arm64 5.4.5-0.1 [125 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libapparmor1 arm64 4.0.0~alpha2-0ubuntu6 [48.1 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit-common all 1:3.1.2-1 [5512 B] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libcap-ng0 arm64 0.8.3-3 [14.9 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit1 arm64 1:3.1.2-1 [47.0 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libblkid1 arm64 2.39.2-6ubuntu1 [121 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libkmod2 arm64 30+20230601-2ubuntu1 [49.8 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-8-0 arm64 10.42-4ubuntu1 [211 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libselinux1 arm64 3.5-1build2 [78.4 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libmount1 arm64 2.39.2-6ubuntu1 [132 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libpam0g arm64 1.5.2-9.1ubuntu1 [65.2 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libseccomp2 arm64 2.5.4-2ubuntu1 [50.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-sysv arm64 255-1ubuntu1 [11.7 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-dev all 255-1ubuntu1 [98.5 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd arm64 255-1ubuntu1 [3415 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd-shared arm64 255-1ubuntu1 [2009 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libargon2-1 arm64 0~20190702+dfsg-4 [20.5 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libuuid1 arm64 2.39.2-6ubuntu1 [34.3 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libcryptsetup12 arm64 2:2.6.1-5ubuntu1 [239 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libfdisk1 arm64 2.39.2-6ubuntu1 [141 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 mount arm64 2.39.2-6ubuntu1 [116 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd0 arm64 255-1ubuntu1 [419 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libudev1 arm64 255-1ubuntu1 [168 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxxhash0 arm64 0.8.2-2 [21.2 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libapt-pkg6.0 arm64 2.7.7 [893 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 tar arm64 1.34+dfsg-1.2ubuntu2 [285 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dpkg arm64 1.22.1ubuntu5 [1385 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 grep arm64 3.11-3 [158 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 login arm64 1:4.13+dfsg1-3ubuntu1 [200 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-bin arm64 6.4+20231209-1 [185 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libperl5.36 arm64 5.36.0-10ubuntu1 [4673 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 perl arm64 5.36.0-10ubuntu1 [235 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 perl-base arm64 5.36.0-10ubuntu1 [1721 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libdb5.3 arm64 5.3.28+dfsg2-4 [718 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm6 arm64 1.23-5 [33.8 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm-compat4 arm64 1.23-5 [6302 B] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 util-linux arm64 2.39.2-6ubuntu1 [1113 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libdebconfclient0 arm64 0.271ubuntu1 [11.2 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 base-passwd arm64 3.6.3 [51.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.38-3ubuntu1 [590 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-base all 6.4+20231209-1 [25.2 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 sysvinit-utils arm64 3.08-3ubuntu1 [33.3 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt arm64 2.7.7 [1331 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt-utils arm64 2.7.7 [205 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libunistring5 arm64 1.1-2 [528 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libidn2-0 arm64 2.3.4-1build1 [65.3 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libffi8 arm64 3.4.4-2 [22.2 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libp11-kit0 arm64 0.25.3-2ubuntu2 [274 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libgnutls30 arm64 3.8.1-4ubuntu6 [930 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules-bin arm64 1.5.2-9.1ubuntu1 [46.7 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules arm64 1.5.2-9.1ubuntu1 [283 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 init arm64 1.66ubuntu1 [6186 B] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libsmartcols1 arm64 2.39.2-6ubuntu1 [62.9 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 uuid-runtime arm64 2.39.2-6ubuntu1 [32.3 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error-l10n all 1.47-3 [7936 B] Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error0 arm64 1.47-3 [69.5 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage-common all 3.5-1build1 [9982 B] Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libsepol2 arm64 3.5-2 [289 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage2 arm64 3.5-1build1 [90.0 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libncursesw6 arm64 6.4+20231209-1 [144 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libtinfo6 arm64 6.4+20231209-1 [103 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 passwd arm64 1:4.13+dfsg1-3ubuntu1 [837 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-2ubuntu1 [56.5 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 mawk arm64 1.3.4.20231126-1 [123 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-2ubuntu1 [706 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 readline-common all 8.2-3 [56.2 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline8 arm64 8.2-3 [152 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsqlite3-0 arm64 3.44.2-1 [691 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 openssl arm64 3.0.10-1ubuntu3 [1168 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 bash-completion all 1:2.11-8 [180 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 bsdextrautils arm64 2.39.2-6ubuntu1 [71.4 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpng16-16 arm64 1.6.40-2 [183 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 xz-utils arm64 5.4.5-0.1 [268 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-2ubuntu1 [1108 B] Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-2ubuntu1 [5192 B] Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-2ubuntu1 [29.0 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dpkg-dev all 1.22.1ubuntu5 [1147 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdpkg-perl all 1.22.1ubuntu5 [286 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 44 [12.4 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libfakeroot arm64 1.32.2-1 [32.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 fakeroot arm64 1.32.2-1 [66.7 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 optipng arm64 0.7.7-3 [82.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 pinentry-curses arm64 1.2.1-3ubuntu1 [34.0 kB] Preconfiguring packages ... Fetched 105 MB in 4s (24.2 MB/s) (Reading database ... 13662 files and directories currently installed.) Preparing to unpack .../00-libnsl-dev_1.3.0-3_arm64.deb ... Unpacking libnsl-dev:arm64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../01-libc6-dev_2.38-3ubuntu1_arm64.deb ... Unpacking libc6-dev:arm64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../02-libc-dev-bin_2.38-3ubuntu1_arm64.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../03-libtirpc-common_1.3.4+ds-1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1_arm64.deb ... Unpacking libtirpc-dev:arm64 (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-5build1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../06-libkrb5-3_1.20.1-5build1_arm64.deb ... 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Setting up libpng16-16:arm64 (1.6.40-2) ... Setting up libatomic1:arm64 (13.2.0-8ubuntu1) ... Setting up libncursesw6:arm64 (6.4+20231209-1) ... Setting up libk5crypto3:arm64 (1.20.1-5build1) ... Setting up libubsan1:arm64 (13.2.0-8ubuntu1) ... Setting up uuid-runtime (2.39.2-6ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libhwasan0:arm64 (13.2.0-8ubuntu1) ... Setting up cpp (4:13.2.0-2ubuntu1) ... Setting up libasan8:arm64 (13.2.0-8ubuntu1) ... Setting up procps (2:4.0.4-2ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20231126-1) ... Setting up libkrb5-3:arm64 (1.20.1-5build1) ... Setting up libtsan2:arm64 (13.2.0-8ubuntu1) ... Setting up libbinutils:arm64 (2.41.50.20231214-1ubuntu1) ... Setting up libc-dev-bin (2.38-3ubuntu1) ... Setting up openssl (3.0.10-1ubuntu3) ... Setting up libgpg-error-l10n (1.47-3) ... Setting up readline-common (8.2-3) ... Setting up libcc1-0:arm64 (13.2.0-8ubuntu1) ... Setting up liblsan0:arm64 (13.2.0-8ubuntu1) ... Setting up libitm1:arm64 (13.2.0-8ubuntu1) ... Setting up libgdbm6:arm64 (1.23-5) ... Setting up libctf0:arm64 (2.41.50.20231214-1ubuntu1) ... Setting up pinentry-curses (1.2.1-3ubuntu1) ... Setting up libreadline8:arm64 (8.2-3) ... Setting up libgprofng0:arm64 (2.41.50.20231214-1ubuntu1) ... Setting up optipng (0.7.7-3) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-5build1) ... Setting up libgdbm-compat4:arm64 (1.23-5) ... Setting up libgcc-13-dev:arm64 (13.2.0-8ubuntu1) ... Setting up libperl5.36:arm64 (5.36.0-10ubuntu1) ... Setting up libtirpc3:arm64 (1.3.4+ds-1) ... Setting up binutils-aarch64-linux-gnu (2.41.50.20231214-1ubuntu1) ... Setting up binutils (2.41.50.20231214-1ubuntu1) ... Setting up perl (5.36.0-10ubuntu1) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1) ... Setting up gcc-13 (13.2.0-8ubuntu1) ... Setting up libdpkg-perl (1.22.1ubuntu5) ... Setting up libnsl2:arm64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu5) ... Setting up libnsl-dev:arm64 (1.3.0-3) ... Setting up libc6-dev:arm64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:arm64 (13.2.0-8ubuntu1) ... Setting up g++-13 (13.2.0-8ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27189803 arm64 noble-proposed -c chroot:build-PACKAGEBUILD-27189803 --arch=arm64 --dist=noble-proposed --nolog libseqlib_1.2.0+dfsg-11.dsc Initiating build PACKAGEBUILD-27189803 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos03-arm64-009.buildd +==============================================================================+ | libseqlib 1.2.0+dfsg-11 (arm64) Fri, 15 Dec 2023 05:13:41 +0000 | +==============================================================================+ Package: libseqlib Version: 1.2.0+dfsg-11 Source Version: 1.2.0+dfsg-11 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27189803/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-phNqLq/resolver-ezMW4x' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libseqlib_1.2.0+dfsg-11.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libseqlib-phNqLq/libseqlib-1.2.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-phNqLq' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev, libjsoncpp-dev, libssw-dev, libbz2-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev, libjsoncpp-dev, libssw-dev, libbz2-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [465 B] Get:5 copy:/<>/apt_archive ./ Packages [547 B] Fetched 1969 B in 0s (121 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism diffstat dwz file gettext gettext-base groff-base intltool-debian iso-codes libaliased-perl libapt-pkg-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libbwa-dev libbz2-dev libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3-gnutls libcurl4-gnutls-dev libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdw1 libdynaloader-functions-perl libelf1 libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexpat1 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-stripnondeterminism-perl libfml-dev libfml0 libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhts-dev libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libjsoncpp-dev libjsoncpp25 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libpipeline1 libpkgconf3 libproc-processtable-perl libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh-4 libssw-dev libssw0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop m4 man-db media-types netbase patchutils perl-openssl-defaults pkg-config pkg-kde-tools pkgconf pkgconf-bin po-debconf python3 python3-minimal python3.11 python3.11-minimal t1utils ucf unzip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff isoquery samtools libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libxml-parser-perl libdata-dump-perl libio-compress-brotli-perl libcrypt-ssleay-perl liblzma-doc libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libxstring-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl m4-doc apparmor less www-browser cdbs libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support zip Recommended packages: curl | wget | lynx bzip2-doc libcgi-fast-perl libarchive-cpio-perl libhtml-format-perl libldap-common liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libltdl-dev libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism diffstat dwz file gettext gettext-base groff-base intltool-debian iso-codes libaliased-perl libapt-pkg-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libbwa-dev libbz2-dev libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3-gnutls libcurl4-gnutls-dev libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdw1 libdynaloader-functions-perl libelf1 libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexpat1 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-stripnondeterminism-perl libfml-dev libfml0 libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhts-dev libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libjsoncpp-dev libjsoncpp25 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libpipeline1 libpkgconf3 libproc-processtable-perl libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh-4 libssw-dev libssw0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop m4 man-db media-types netbase patchutils perl-openssl-defaults pkg-config pkg-kde-tools pkgconf pkgconf-bin po-debconf python3 python3-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy t1utils ucf unzip zlib1g-dev 0 upgraded, 196 newly installed, 0 to remove and 0 not upgraded. Need to get 44.3 MB of archives. After this operation, 164 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [772 B] Ign:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.7-2 Ign:3 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1 arm64 2.5.0-2 Ign:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.7-2 Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-minimal arm64 3.11.4-5ubuntu1 [26.9 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 netbase all 6.4 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.7-2 [1907 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.7-2 [583 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3-stdlib arm64 3.11.4-5ubuntu1 [9568 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3 arm64 3.11.4-5ubuntu1 [22.9 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 iso-codes all 4.15.0-1 [3458 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libelf1 arm64 0.190-1 [57.1 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libicu72 arm64 72.1-4ubuntu1 [10.7 MB] Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxml2 arm64 2.9.14+dfsg-1.3build2 [729 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libyaml-0-2 arm64 0.2.5-1 [51.8 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 ucf all 3.0043+nmu1 [56.5 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic-mgc arm64 1:5.45-2 [307 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic1 arm64 1:5.45-2 [85.1 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 file arm64 1:5.45-2 [21.9 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 gettext-base arm64 0.21-14 [37.3 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libuchardet0 arm64 0.0.8-1 [75.1 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 groff-base arm64 1.23.0-3 [989 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libnghttp2-14 arm64 1.58.0-1 [72.7 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libpipeline1 arm64 1.5.7-1 [23.3 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libpsl5 arm64 0.21.2-1build1 [57.0 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 man-db arm64 2.12.0-1 [1224 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3 [558 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 autopoint all 0.21-14 [422 kB] Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 d-shlibs all 0.105 [10.9 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libdebhelper-perl all 13.11.8ubuntu1 [85.9 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libtool all 2.4.7-7 [166 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 dh-autoreconf all 20 [16.1 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-override-perl all 0.10-1 [10.0 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1 arm64 0.190-1 [254 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 dwz arm64 0.15-1 [110 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gettext arm64 0.21-14 [843 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 debhelper all 13.11.8ubuntu1 [940 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 diffstat arm64 1.65-1 [27.2 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libaliased-perl all 0.34-3 [12.8 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libapt-pkg-perl arm64 0.1.40build3 [68.8 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libb-hooks-op-check-perl arm64 0.22-2build1 [9336 B] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libdevel-callchecker-perl arm64 0.008-2 [13.8 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libparams-classify-perl arm64 0.015-2build2 [20.6 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libtry-tiny-perl all 0.31-2 [20.8 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B] Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libvariable-magic-perl arm64 0.63-1 [34.2 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libberkeleydb-perl arm64 0.64-2 [123 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libbrotli1 arm64 1.1.0-2 [339 kB] Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libbwa-dev arm64 0.7.17-7 [148 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5build1 [34.5 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcapture-tiny-perl all 0.48-2 [20.2 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-tagset-perl all 3.20-6 [11.3 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 liburi-perl all 5.21-1 [85.4 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-parser-perl arm64 3.81-1 [86.6 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcgi-pm-perl all 4.60-1 [187 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libclass-data-inheritable-perl all 0.08-3 [8084 B] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libclass-method-modifiers-perl all 2.15-1 [16.1 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libclass-xsaccessor-perl arm64 1.19-4build1 [33.3 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libclone-perl arm64 0.46-1 [10.5 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libconfig-tiny-perl all 2.30-1 [14.7 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libparams-util-perl arm64 1.102-2 [20.9 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-install-perl all 0.929-1 [9764 B] Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdata-optlist-perl all 0.114-1 [9708 B] Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-exporter-perl all 0.990-1 [49.0 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libconst-fast-perl all 0.014-2 [8034 B] Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libcpanel-json-xs-perl arm64 4.37-1 [115 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-4 [21.1 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-4 [54.5 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libldap2 arm64 2.6.6+dfsg-1~exp1ubuntu1 [191 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build4 [59.2 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libssh-4 arm64 0.10.5-3ubuntu1 [185 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl3-gnutls arm64 8.4.0-2ubuntu1 [322 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl4-gnutls-dev arm64 8.4.0-2ubuntu1 [442 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libdevel-stacktrace-perl all 2.0400-2 [22.2 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libexception-class-perl all 1.45-1 [28.6 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.1 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libdata-dpath-perl all 0.59-1 [39.2 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libdata-messagepack-perl arm64 1.02-1build1 [32.6 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-domain-tld-perl all 1.75-3 [29.4 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libdata-validate-domain-perl all 0.10-1.1 [9992 B] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.0 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-netmask-perl all 2.0002-2 [24.8 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2build1 [81.1 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libdata-validate-ip-perl all 0.31-1 [17.2 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libdata-validate-uri-perl all 0.07-2 [11.1 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.18-1 [42.6 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate-dev arm64 1.18-1 [50.0 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libemail-address-xs-perl arm64 1.05-1build1 [28.9 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libencode-locale-perl all 1.05-3 [11.6 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libipc-system-simple-perl all 1.30-2 [22.3 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-basedir-perl all 0.09-2 [14.4 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libnumber-compare-perl all 0.03-3 [5974 B] Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-glob-perl all 0.11-3 [6780 B] Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-find-rule-perl all 0.34-3 [24.4 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-date-perl all 6.06-1 [10.2 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-listing-perl all 6.16-1 [11.3 kB] Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libfml0 arm64 0.1+git20190320.b499514-1 [64.7 kB] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libfml-dev arm64 0.1+git20190320.b499514-1 [77.8 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libfont-ttf-perl all 1.06-2 [323 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libio-html-perl all 1.004-3 [15.9 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-form-perl all 6.11-1 [32.1 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.6 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-tree-perl all 5.07-3 [200 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-cookies-perl all 6.10-1 [18.4 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-negotiate-perl all 6.01-2 [12.4 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 perl-openssl-defaults arm64 7 [7536 B] Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-ssleay-perl arm64 1.92-2build2 [292 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libio-socket-ssl-perl all 2.084-1 [193 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-http-perl all 6.23-1 [22.3 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 liblwp-protocol-https-perl all 6.11-1 [8992 B] Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libwww-robotrules-perl all 6.02-1 [12.6 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libwww-perl all 6.72-1 [143 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [38.0 kB] Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.5.2-1 [77.5 kB] Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.1 [178 kB] Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts-dev arm64 1.18+ds-1 [5806 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libimport-into-perl all 1.002005-2 [10.7 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libio-interactive-perl all 1.025-1 [10.4 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libjson-maybexs-perl all 1.004005-1 [11.3 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 liblist-compare-perl all 0.55-2 [62.9 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 liblist-someutils-perl all 0.59-1 [30.4 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 liblist-utilsby-perl all 0.12-2 [14.9 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 liblzo2-2 arm64 2.10-2build3 [51.4 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libmarkdown2 arm64 2.2.7-2 [37.0 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libmldbm-perl all 2.05-4 [16.0 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 librole-tiny-perl all 2.002004-1 [16.3 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-quote-perl all 2.006008-1ubuntu1 [20.7 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libmoo-perl all 2.005005-1 [47.4 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libstrictures-perl all 2.000006-1 [16.3 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libmoox-aliases-perl all 0.001006-2 [6796 B] Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libmouse-perl arm64 2.5.10-1build5 [160 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 libpackage-stash-perl all 0.40-1 [19.5 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-identify-perl arm64 0.14-3 [9738 B] Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-name-perl arm64 0.27-1 [10.6 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 libpath-tiny-perl all 0.144-1 [47.7 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libperlio-gzip-perl arm64 0.20-1build1 [14.6 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 libperlio-utf8-strict-perl arm64 0.010-1 [11.0 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 libproc-processtable-perl arm64 0.636-1 [36.0 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libregexp-wildcards-perl all 1.05-3 [12.9 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 libsereal-decoder-perl arm64 5.004+ds-1 [98.9 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 libsereal-encoder-perl arm64 5.004+ds-1 [101 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 libsort-versions-perl all 1.62-3 [7378 B] Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 libssw0 arm64 1.1-14 [21.1 kB] Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 libssw-dev arm64 1.1-14 [22.9 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 libxs-parse-keyword-perl arm64 0.39-1 [56.4 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main arm64 libsyntax-keyword-try-perl arm64 0.29-1 [25.8 kB] Get:171 http://ftpmaster.internal/ubuntu noble/main arm64 libterm-readkey-perl arm64 2.38-2build1 [23.2 kB] Get:172 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-levenshteinxs-perl arm64 0.03-5build1 [8004 B] Get:173 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-markdown-discount-perl arm64 0.16-1 [12.2 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-xslate-perl arm64 3.5.9-1build2 [185 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 libtime-duration-perl all 1.21-2 [12.3 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main arm64 libtime-moment-perl arm64 0.44-2build1 [71.8 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main arm64 libunicode-utf8-perl arm64 0.62-2 [17.7 kB] Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 libwww-mechanize-perl all 2.17-1ubuntu1 [95.6 kB] Get:179 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-namespacesupport-perl all 1.12-2 [13.5 kB] Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-sax-base-perl all 1.09-3 [18.9 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1build1 [305 kB] Get:183 http://ftpmaster.internal/ubuntu noble/main arm64 libyaml-libyaml-perl arm64 0.86+ds-1 [29.5 kB] Get:184 http://ftpmaster.internal/ubuntu noble/main arm64 libdevel-size-perl arm64 0.83-2build1 [19.4 kB] Get:185 http://ftpmaster.internal/ubuntu noble/main arm64 libipc-run3-perl all 0.048-3 [30.3 kB] Get:186 http://ftpmaster.internal/ubuntu noble/main arm64 lzip arm64 1.23-6 [80.0 kB] Get:187 http://ftpmaster.internal/ubuntu noble/main arm64 lzop arm64 1.04-2build2 [84.0 kB] Get:188 http://ftpmaster.internal/ubuntu noble/main arm64 patchutils arm64 0.4.2-1build2 [75.8 kB] Get:189 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] Get:190 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu1 [170 kB] Get:191 http://ftpmaster.internal/ubuntu noble/main arm64 lintian all 2.116.3ubuntu4 [1152 kB] Get:192 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] Get:193 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] Get:194 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] Get:195 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp-dev arm64 1.9.5-6 [23.0 kB] Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-kde-tools arm64 0.15.38ubuntu1 [97.9 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.7-2 [836 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1 arm64 2.5.0-2 [72.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.7-2 [2151 kB] Preconfiguring packages ... Fetched 44.3 MB in 1min 8s (656 kB/s) Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... 13860 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.7-2_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.7-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-2_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_arm64.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:arm64 (3.11.7-2) ... Setting up libexpat1:arm64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14174 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.4-5ubuntu1_arm64.deb ... 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Setting up libicu72:arm64 (72.1-4ubuntu1) ... Setting up libmouse-perl (2.5.10-1build5) ... Setting up libdata-messagepack-perl (1.02-1build1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libclone-perl:arm64 (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:arm64 (4.37-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2build1) ... Setting up unzip (6.0-28ubuntu1) ... Setting up libdebhelper-perl (13.11.8ubuntu1) ... Setting up libbrotli1:arm64 (1.1.0-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:arm64 (1.58.0-1) ... Setting up libmagic1:arm64 (1:5.45-2) ... Setting up libdeflate0:arm64 (1.18-1) ... Setting up perl-openssl-defaults:arm64 (7) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up liblzo2-2:arm64 (2.10-2build3) ... Setting up libtime-moment-perl (0.44-2build1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-2) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libfml0:arm64 (0.1+git20190320.b499514-1) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-4) ... Setting up patchutils (0.4.2-1build2) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2build1) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.39-1) ... Setting up libpkgconf3:arm64 (1.8.1-2) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up lzip (1.23-6) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4build2) ... Setting up diffstat (1.65-1) ... Setting up libvariable-magic-perl (0.63-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-14) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2build1) ... Setting up libjsoncpp25:arm64 (1.9.5-6) ... Setting up d-shlibs (0.105) ... Setting up ucf (3.0043+nmu1) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libparams-util-perl (1.102-2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-4) ... Setting up libssh-4:arm64 (0.10.5-3ubuntu1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up autoconf (2.71-3) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1build2) ... Setting up libbwa-dev (0.7.17-7) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.4.5-0.1) ... Setting up libsub-name-perl:arm64 (0.27-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... Setting up libsyntax-keyword-try-perl (0.29-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.636-1) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up libuchardet0:arm64 (0.0.8-1) ... Setting up lzop (1.04-2build2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libsub-override-perl (0.10-1) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1ubuntu1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4build1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2build1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up libtext-levenshteinxs-perl (0.03-5build1) ... Setting up libdeflate-dev:arm64 (1.18-1) ... Setting up libperlio-gzip-perl (0.20-1build1) ... Setting up libelf1:arm64 (0.190-1) ... Setting up libssw0:arm64 (1.1-14) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3build2) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up libldap2:arm64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up liburi-perl (5.21-1) ... Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libbz2-dev:arm64 (1.0.8-5build1) ... Setting up libemail-address-xs-perl (1.05-1build1) ... Setting up libnet-ssleay-perl:arm64 (1.92-2build2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libjsoncpp-dev:arm64 (1.9.5-6) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libdw1:arm64 (0.190-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up gettext (0.21-14) ... Setting up libfml-dev:arm64 (0.1+git20190320.b499514-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libssw-dev:arm64 (1.1-14) ... Setting up libtool (2.4.7-7) ... Setting up libpython3.11-stdlib:arm64 (3.11.7-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libcurl3-gnutls:arm64 (8.4.0-2ubuntu1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libcurl4-gnutls-dev:arm64 (8.4.0-2ubuntu1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up pkgconf:arm64 (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:arm64 (1.8.1-2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1build1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libhtml-parser-perl:arm64 (3.81-1) ... Setting up debugedit (1:5.0-5) ... Setting up libio-socket-ssl-perl (2.084-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libpython3-stdlib:arm64 (3.11.4-5ubuntu1) ... Setting up libhttp-message-perl (6.45-1ubuntu1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up python3.11 (3.11.7-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhts3:arm64 (1.18+ds-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2build2) ... Setting up libcgi-pm-perl (4.60-1) ... Setting up libhts-dev:arm64 (1.18+ds-1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1ubuntu1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3ubuntu4) ... Setting up pkg-kde-tools (0.15.38ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for systemd (255-1ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 arm64 (aarch64) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.1ubuntu5 g++-13_13.2.0-8ubuntu1 gcc-13_13.2.0-8ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-8ubuntu1 libstdc++6_13.2.0-8ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1ubuntu1 binutils-aarch64-linux-gnu_2.41.50.20231214-1ubuntu1 binutils-common_2.41.50.20231214-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-8ubuntu1 d-shlibs_0.105 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffstat_1.65-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu5 dpkg-dev_1.22.1ubuntu5 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-8ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-8ubuntu1 gcc-13-base_13.2.0-8ubuntu1 gettext_0.21-14 gettext-base_0.21-14 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 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mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.2-6ubuntu1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 patchutils_0.4.2-1build2 perl_5.36.0-10ubuntu1 perl-base_5.36.0-10ubuntu1 perl-modules-5.36_5.36.0-10ubuntu1 perl-openssl-defaults_7 pinentry-curses_1.2.1-3ubuntu1 pkg-config_1.8.1-2 pkg-kde-tools_0.15.38ubuntu1 pkgbinarymangler_154 pkgconf_1.8.1-2 pkgconf-bin_1.8.1-2 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 python3_3.11.4-5ubuntu1 python3-minimal_3.11.4-5ubuntu1 python3.11_3.11.7-2 python3.11-minimal_3.11.7-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_255-1ubuntu1 systemd-dev_255-1ubuntu1 systemd-sysv_255-1ubuntu1 sysvinit-utils_3.08-3ubuntu1 t1utils_1.41-4build2 tar_1.34+dfsg-1.2ubuntu2 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 ucf_3.0043+nmu1 unzip_6.0-28ubuntu1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libseqlib Binary: libseqlib2, libseqlib-dev Architecture: any Version: 1.2.0+dfsg-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/walaj/SeqLib Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libseqlib Vcs-Git: https://salsa.debian.org/med-team/libseqlib.git Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev, libjsoncpp-dev, libssw-dev, libbz2-dev Package-List: libseqlib-dev deb libdevel optional arch=any libseqlib2 deb libs optional arch=any Checksums-Sha1: 584cb70cc2d11d595f26ec50763d11ca570395c5 148996 libseqlib_1.2.0+dfsg.orig.tar.xz 89ee20e44e0e76c6efce309a56e33556a76149bd 15456 libseqlib_1.2.0+dfsg-11.debian.tar.xz Checksums-Sha256: 408ee92e5041ff45d9d259d1507ef783e74c565d02e0c623ef0a67a7c387b953 148996 libseqlib_1.2.0+dfsg.orig.tar.xz 9e85fd66de1a1e1fcb576e045cfd1fefbeed75b222450032dfdc0b39a39ba2ea 15456 libseqlib_1.2.0+dfsg-11.debian.tar.xz Files: 8d8f26bf4fd751789bbc53bd7319355a 148996 libseqlib_1.2.0+dfsg.orig.tar.xz 6f36289dd0bbde1824dc445037845166 15456 libseqlib_1.2.0+dfsg-11.debian.tar.xz Dgit: 279a189ccc52e73b124a50bcfe14717ee68c64d8 debian archive/debian/1.2.0+dfsg-11 https://git.dgit.debian.org/libseqlib -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV7fQAUHGVtb2xsaWVy 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signature for ./libseqlib_1.2.0+dfsg-11.dsc: no acceptable signature found dpkg-source: info: extracting libseqlib in /<> dpkg-source: info: unpacking libseqlib_1.2.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libseqlib_1.2.0+dfsg-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying adapt_to_debian_fermi-lite.patch dpkg-source: info: applying fix_fermi-lite_usage.patch dpkg-source: info: applying fix_htslib_usage.patch dpkg-source: info: applying fml_include_path.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying use_debian_packaged_jsoncpp.patch dpkg-source: info: applying use_debian_packaged_ssw.patch dpkg-source: info: applying pkg-config.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27189803 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27189803 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27189803 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libseqlib dpkg-buildpackage: info: source version 1.2.0+dfsg-11 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with pkgkde_symbolshelper dh_clean debian/rules binary-arch dh binary-arch --with pkgkde_symbolshelper dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:6: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:6: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:6: the top level configure.ac:19: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:19: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:19: the top level configure.ac:17: installing './compile' configure.ac:19: installing './config.guess' configure.ac:19: installing './config.sub' configure.ac:4: installing './install-sh' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for zlib.h... yes checking for library containing gzopen... -lz checking for library containing lzma_code... -llzma checking for library containing BZ2_bzBuffToBuffDecompress... -lbz2 checking for library containing clock_gettime... none required checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for htslib... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/seqtools/Makefile config.status: creating libseqlib.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-ReadFilter.lo `test -f 'ReadFilter.cpp' || echo './'`ReadFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-SeqPlot.lo `test -f 'SeqPlot.cpp' || echo './'`SeqPlot.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BFC.cpp -fPIC -DPIC -o .libs/libseqlib_la-BFC.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c FastqReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c ReadFilter.cpp -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c SeqPlot.cpp -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-GenomicRegion.lo `test -f 'GenomicRegion.cpp' || echo './'`GenomicRegion.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c GenomicRegion.cpp -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-RefGenome.lo `test -f 'RefGenome.cpp' || echo './'`RefGenome.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c RefGenome.cpp -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H 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libseqlib_la-BamWriter.lo `test -f 'BamWriter.cpp' || echo './'`BamWriter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BamWriter.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BamReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BWAWrapper.cpp -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BamRecord.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/libseqlib-1.2.0+dfsg-11 -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o : warning: "_FORTIFY_SOURCE" redefined : note: this is the location of the previous definition libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=3 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lfml -lhts -ljsoncpp -lssw -lbz2 -llzma -lz -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -g -O2 -mno-omit-leaf-frame-pointer -fstack-protector-strong -mbranch-protection=standard -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libseqlib.so.2 -o .libs/libseqlib.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libseqlib.so.2" && ln -s "libseqlib.so.2.0.0" "libseqlib.so.2") libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.2.0.0" "libseqlib.so") libtool: link: ar cr .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o libtool: link: ranlib .libs/libseqlib.a libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" ) make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libseqlib-1.2.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' echo "mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib" mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # Trick to get also headers moved by d-shlibmove cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/SeqLib usr/include \ --override s/libfml0-dev/libfml-dev/ \ --override s/libssw0-dev/libssw-dev/ \ src/.libs/libseqlib.so Library package automatic movement utility --> libfml-dev package exists. --> libhts-dev package exists. --> libjsoncpp-dev package exists. --> libssw-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libseqlib-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libseqlib2/usr/lib/aarch64-linux-gnu mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/aarch64-linux-gnu mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/aarch64-linux-gnu mv /<>/src/.libs/libseqlib.so.2 debian/libseqlib2/usr/lib/aarch64-linux-gnu mv /<>/src/.libs/libseqlib.so.2.0.0 debian/libseqlib2/usr/lib/aarch64-linux-gnu PKGDEV=libseqlib-dev PKGSHL=libseqlib2 install -d -m 755 debian/libseqlib-dev/usr/include mv debian/SeqLib debian/libseqlib-dev/usr/include mkdir -p /<>/debian/libseqlib-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv libseqlib.pc /<>/debian/libseqlib-dev/usr/lib/aarch64-linux-gnu/pkgconfig make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a 98f1babbde09ee005e3d1c74e137e505b3b12c52 dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol err_fclose used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol is_bwt used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bns_dump used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwa_idx_destroy used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol kseq_read used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bns_destroy used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_cal_sa used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwa_fill_scmat used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwt_gen_cnt_table used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwa_verbose used by debian/libseqlib2/usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libseqlib2 (in debian/libseqlib2); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib-dev (in debian/libseqlib-dev); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib2-dbgsym (in debian/.debhelper/libseqlib2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libseqlib2/DEBIAN/control, package libseqlib2, directory debian/libseqlib2 pkgstripfiles: processing control file: debian/libseqlib-dev/DEBIAN/control, package libseqlib-dev, directory debian/libseqlib-dev pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib2 ... INFO: pkgstripfiles: waiting for lock (libseqlib-dev) ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib2' in '../libseqlib2_1.2.0+dfsg-11_arm64.deb'. pkgstripfiles: processing control file: debian/.debhelper/libseqlib2/dbgsym-root/DEBIAN/control, package libseqlib2-dbgsym, directory debian/.debhelper/libseqlib2/dbgsym-root dpkg-deb: building package 'libseqlib2-dbgsym' in 'debian/.debhelper/scratch-space/build-libseqlib2/libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.deb'. Renaming libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.deb to libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.ddeb Searching for duplicated docs in dependency libseqlib2... symlinking changelog.Debian.gz in libseqlib-dev to file in libseqlib2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libseqlib-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.2.0+dfsg-11_arm64.deb'. dpkg-genbuildinfo --build=any -O../libseqlib_1.2.0+dfsg-11_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libseqlib_1.2.0+dfsg-11_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-15T05:15:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libseqlib_1.2.0+dfsg-11_arm64.changes: -------------------------------------- Format: 1.8 Date: Thu, 14 Dec 2023 23:01:06 +0100 Source: libseqlib Binary: libseqlib-dev libseqlib2 Built-For-Profiles: noudeb Architecture: arm64 Version: 1.2.0+dfsg-11 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat libseqlib2 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat Closes: 1047821 Changes: libseqlib (1.2.0+dfsg-11) unstable; urgency=medium . * d/clean: new: cleanup leftovers. (Closes: #1047821) Checksums-Sha1: fa71c139500f5ec32b68b55f4a961b8d05870141 233286 libseqlib-dev_1.2.0+dfsg-11_arm64.deb 844f643cd0dce29f43a2691507bb0f03b1ae3354 2148366 libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.ddeb e025cf92e4e04739596eaa12f1e5fac0c28b6b45 164542 libseqlib2_1.2.0+dfsg-11_arm64.deb acb5bd564fcfd9ccf37ace240a92e85682bc6466 12457 libseqlib_1.2.0+dfsg-11_arm64.buildinfo Checksums-Sha256: f072af9be2adc90c71cdb3aa0ee938f561805ad426597cf2ee58660268082745 233286 libseqlib-dev_1.2.0+dfsg-11_arm64.deb f0f3a7c47c710b3fae069d1167383cc771887485744980670c0205165159f922 2148366 libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.ddeb d41a7eea0a2dc5f4fbad636fbd41019b43fb68f2402997bc64d8950b3b843ea0 164542 libseqlib2_1.2.0+dfsg-11_arm64.deb f2ccc1d6dbbbbdcd2d1187622bb648abaa7225c430a3b048874f7b41f38473f9 12457 libseqlib_1.2.0+dfsg-11_arm64.buildinfo Files: 8c68a4fa26b5bd5ccca64723f543d630 233286 libdevel optional libseqlib-dev_1.2.0+dfsg-11_arm64.deb 87a552188e703aa56a9ff230ac1a7e74 2148366 debug optional libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.ddeb 9e040edbd6cc1856acdab7e0db35d11e 164542 libs optional libseqlib2_1.2.0+dfsg-11_arm64.deb c7820ad673741dfc57144b3e651adecb 12457 science optional libseqlib_1.2.0+dfsg-11_arm64.buildinfo /<>/libseqlib_1.2.0+dfsg-11_arm64.changes.new could not be renamed to /<>/libseqlib_1.2.0+dfsg-11_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libseqlib Binary: libseqlib-dev libseqlib2 libseqlib2-dbgsym Architecture: arm64 Version: 1.2.0+dfsg-11 Checksums-Md5: 8c68a4fa26b5bd5ccca64723f543d630 233286 libseqlib-dev_1.2.0+dfsg-11_arm64.deb 87a552188e703aa56a9ff230ac1a7e74 2148366 libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.ddeb 9e040edbd6cc1856acdab7e0db35d11e 164542 libseqlib2_1.2.0+dfsg-11_arm64.deb Checksums-Sha1: fa71c139500f5ec32b68b55f4a961b8d05870141 233286 libseqlib-dev_1.2.0+dfsg-11_arm64.deb 844f643cd0dce29f43a2691507bb0f03b1ae3354 2148366 libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.ddeb e025cf92e4e04739596eaa12f1e5fac0c28b6b45 164542 libseqlib2_1.2.0+dfsg-11_arm64.deb Checksums-Sha256: f072af9be2adc90c71cdb3aa0ee938f561805ad426597cf2ee58660268082745 233286 libseqlib-dev_1.2.0+dfsg-11_arm64.deb f0f3a7c47c710b3fae069d1167383cc771887485744980670c0205165159f922 2148366 libseqlib2-dbgsym_1.2.0+dfsg-11_arm64.ddeb d41a7eea0a2dc5f4fbad636fbd41019b43fb68f2402997bc64d8950b3b843ea0 164542 libseqlib2_1.2.0+dfsg-11_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Fri, 15 Dec 2023 05:15:35 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), apt (= 2.7.7), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-aarch64-linux-gnu (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-8ubuntu1), d-shlibs (= 0.105), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffstat (= 1.65-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu5), dpkg-dev (= 1.22.1ubuntu5), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-8ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-8ubuntu1), gcc-13-base (= 13.2.0-8ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), gpg (= 2.2.40-1.1ubuntu1), gpgconf (= 2.2.40-1.1ubuntu1), gpgv (= 2.2.40-1.1ubuntu1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), iso-codes (= 4.15.0-1), libacl1 (= 2.3.1-3), libaliased-perl (= 0.34-3), libapt-pkg-perl (= 0.1.40build3), libapt-pkg6.0 (= 2.7.7), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-8ubuntu1), libassuan0 (= 2.5.6-1), libatomic1 (= 13.2.0-8ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2build1), libberkeleydb-perl (= 0.64-2), libbinutils (= 2.41.50.20231214-1ubuntu1), libblkid1 (= 2.39.2-6ubuntu1), libbrotli1 (= 1.1.0-2), libbwa-dev (= 0.7.17-7), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 13.2.0-8ubuntu1), libcgi-pm-perl (= 4.60-1), libclass-data-inheritable-perl (= 0.08-3), libclass-method-modifiers-perl (= 2.15-1), libclass-xsaccessor-perl (= 1.19-4build1), libclone-perl (= 0.46-1), libcom-err2 (= 1.47.0-2ubuntu1), libconfig-tiny-perl (= 2.30-1), libconst-fast-perl (= 0.014-2), libcpanel-json-xs-perl (= 4.37-1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libcurl3-gnutls (= 8.4.0-2ubuntu1), libcurl4-gnutls-dev (= 8.4.0-2ubuntu1), libdata-dpath-perl (= 0.59-1), libdata-messagepack-perl (= 1.02-1build1), libdata-optlist-perl (= 0.114-1), libdata-validate-domain-perl (= 0.10-1.1), libdata-validate-ip-perl (= 0.31-1), libdata-validate-uri-perl (= 0.07-2), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate-dev (= 1.18-1), libdeflate0 (= 1.18-1), libdevel-callchecker-perl (= 0.008-2), libdevel-size-perl (= 0.83-2build1), libdevel-stacktrace-perl (= 2.0400-2), libdpkg-perl (= 1.22.1ubuntu5), libdw1 (= 0.190-1), libdynaloader-functions-perl (= 0.003-3), libelf1 (= 0.190-1), libemail-address-xs-perl (= 1.05-1build1), libencode-locale-perl (= 1.05-3), libexception-class-perl (= 1.45-1), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-2), libfile-basedir-perl (= 0.09-2), libfile-find-rule-perl (= 0.34-3), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfml-dev (= 0.1+git20190320.b499514-1), libfml0 (= 0.1+git20190320.b499514-1), libfont-ttf-perl (= 1.06-2), libgcc-13-dev (= 13.2.0-8ubuntu1), libgcc-s1 (= 13.2.0-8ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu6), libgomp1 (= 13.2.0-8ubuntu1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41.50.20231214-1ubuntu1), libgssapi-krb5-2 (= 1.20.1-5build1), libhogweed6 (= 3.9.1-2), libhtml-form-perl (= 6.11-1), libhtml-html5-entities-perl (= 0.004-3), libhtml-parser-perl (= 3.81-1), libhtml-tagset-perl (= 3.20-6), libhtml-tokeparser-simple-perl (= 3.16-4), libhtml-tree-perl (= 5.07-3), libhts-dev (= 1.18+ds-1), libhts3 (= 1.18+ds-1), libhtscodecs2 (= 1.5.2-1), libhttp-cookies-perl (= 6.10-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.45-1ubuntu1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 13.2.0-8ubuntu1), libicu72 (= 72.1-4ubuntu1), libidn2-0 (= 2.3.4-1build1), libimport-into-perl (= 1.002005-2), libio-html-perl (= 1.004-3), libio-interactive-perl (= 1.025-1), libio-socket-ssl-perl (= 2.084-1), libio-string-perl (= 1.08-4), libipc-run3-perl (= 0.048-3), libipc-system-simple-perl (= 1.30-2), libisl23 (= 0.26-3), libiterator-perl (= 0.03+ds1-2), libiterator-util-perl (= 0.02+ds1-2), libitm1 (= 13.2.0-8ubuntu1), libjansson4 (= 2.14-2), libjson-maybexs-perl (= 1.004005-1), libjsoncpp-dev (= 1.9.5-6), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblist-compare-perl (= 0.55-2), liblist-someutils-perl (= 0.59-1), liblist-utilsby-perl (= 0.12-2), liblsan0 (= 13.2.0-8ubuntu1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.11-1), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.5-0.1), liblzma5 (= 5.4.5-0.1), liblzo2-2 (= 2.10-2build3), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmarkdown2 (= 2.2.7-2), libmd0 (= 1.1.0-1), libmldbm-perl (= 2.05-4), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-perl (= 0.016-2), libmoo-perl (= 2.005005-1), libmoox-aliases-perl (= 0.001006-2), libmount1 (= 2.39.2-6ubuntu1), libmouse-perl (= 2.5.10-1build5), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libnamespace-clean-perl (= 0.27-2), libncursesw6 (= 6.4+20231209-1), libnet-domain-tld-perl (= 1.75-3), libnet-http-perl (= 6.23-1), libnet-ipv6addr-perl (= 1.02-1), libnet-netmask-perl (= 2.0002-2), libnet-ssleay-perl (= 1.92-2build2), libnetaddr-ip-perl (= 4.079+dfsg-2build1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.3-2ubuntu2), libpackage-stash-perl (= 0.40-1), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libparams-classify-perl (= 0.015-2build2), libparams-util-perl (= 1.102-2), libpath-tiny-perl (= 0.144-1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.36 (= 5.36.0-10ubuntu1), libperlio-gzip-perl (= 0.20-1build1), libperlio-utf8-strict-perl (= 0.010-1), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-2), libproc-processtable-perl (= 0.636-1), libpsl5 (= 0.21.2-1build1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11-minimal (= 3.11.7-2), libpython3.11-stdlib (= 3.11.7-2), libreadline8 (= 8.2-3), libregexp-wildcards-perl (= 1.05-3), librole-tiny-perl (= 2.002004-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsemanage-common (= 3.5-1build1), libsemanage2 (= 3.5-1build1), libsepol2 (= 3.5-2), libsereal-decoder-perl (= 5.004+ds-1), libsereal-encoder-perl (= 5.004+ds-1), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsmartcols1 (= 2.39.2-6ubuntu1), libsort-versions-perl (= 1.62-3), libsqlite3-0 (= 3.44.2-1), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libssw-dev (= 1.1-14), libssw0 (= 1.1-14), libstdc++-13-dev (= 13.2.0-8ubuntu1), libstdc++6 (= 13.2.0-8ubuntu1), libstrictures-perl (= 2.000006-1), libsub-exporter-perl (= 0.990-1), libsub-exporter-progressive-perl (= 0.001013-3), libsub-identify-perl (= 0.14-3), libsub-install-perl (= 0.929-1), libsub-name-perl (= 0.27-1), libsub-override-perl (= 0.10-1), libsub-quote-perl (= 2.006008-1ubuntu1), libsyntax-keyword-try-perl (= 0.29-1), libsystemd0 (= 255-1ubuntu1), libtasn1-6 (= 4.19.0-3), libterm-readkey-perl (= 2.38-2build1), libtext-glob-perl (= 0.11-3), libtext-levenshteinxs-perl (= 0.03-5build1), libtext-markdown-discount-perl (= 0.16-1), libtext-xslate-perl (= 3.5.9-1build2), libtime-duration-perl (= 1.21-2), libtime-moment-perl (= 0.44-2build1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 13.2.0-8ubuntu1), libubsan1 (= 13.2.0-8ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libunicode-utf8-perl (= 0.62-2), libunistring5 (= 1.1-2), liburi-perl (= 5.21-1), libuuid1 (= 2.39.2-6ubuntu1), libvariable-magic-perl (= 0.63-1), libwww-mechanize-perl (= 2.17-1ubuntu1), libwww-perl (= 6.72-1), libwww-robotrules-perl (= 6.02-1), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-1build1), libxml-namespacesupport-perl (= 1.12-2), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-3), libxml2 (= 2.9.14+dfsg-1.3build2), libxs-parse-keyword-perl (= 0.39-1), libxxhash0 (= 0.8.2-2), libyaml-0-2 (= 0.2.5-1), libyaml-libyaml-perl (= 0.86+ds-1), libzstd1 (= 1.5.5+dfsg2-2), lintian (= 2.116.3ubuntu4), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), lzip (= 1.23-6), lzop (= 1.04-2build2), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), netbase (= 6.4), openssl (= 3.0.10-1ubuntu3), passwd (= 1:4.13+dfsg1-3ubuntu1), patch (= 2.7.6-7build2), patchutils (= 0.4.2-1build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), perl-openssl-defaults (= 7), pkg-config (= 1.8.1-2), pkg-kde-tools (= 0.15.38ubuntu1), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5ubuntu1), python3-minimal (= 3.11.4-5ubuntu1), python3.11 (= 3.11.7-2), python3.11-minimal (= 3.11.7-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), t1utils (= 1.41-4build2), tar (= 1.34+dfsg-1.2ubuntu2), tzdata (= 2023c-9ubuntu1), ubuntu-keyring (= 2023.11.28.1), ucf (= 3.0043+nmu1), unzip (= 6.0-28ubuntu1), util-linux (= 2.39.2-6ubuntu1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1702591266" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libseqlib-dev_1.2.0+dfsg-11_arm64.deb ------------------------------------- new Debian package, version 2.0. size 233286 bytes: control archive=1673 bytes. 1415 bytes, 26 lines control 1649 bytes, 24 lines md5sums Package: libseqlib-dev Source: libseqlib Version: 1.2.0+dfsg-11 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1212 Depends: libseqlib2 (= 1.2.0+dfsg-11), libfml-dev, libhts-dev, libjsoncpp-dev, libssw-dev, zlib1g-dev, libbwa-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev) C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. . This package contains the header files and static library. drwxr-xr-x root/root 0 2023-12-14 22:01 ./ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/include/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/include/SeqLib/ -rw-r--r-- root/root 3874 2023-12-14 22:01 ./usr/include/SeqLib/BFC.h -rw-r--r-- root/root 7129 2021-01-07 04:18 ./usr/include/SeqLib/BWAWrapper.h -rw-r--r-- root/root 3605 2023-12-14 22:01 ./usr/include/SeqLib/BamHeader.h -rw-r--r-- root/root 9275 2021-01-07 04:18 ./usr/include/SeqLib/BamReader.h -rw-r--r-- root/root 32406 2023-12-14 22:01 ./usr/include/SeqLib/BamRecord.h -rw-r--r-- root/root 1979 2021-01-07 04:18 ./usr/include/SeqLib/BamWalker.h -rw-r--r-- root/root 3473 2021-01-07 04:18 ./usr/include/SeqLib/BamWriter.h -rw-r--r-- root/root 1170 2021-01-07 04:18 ./usr/include/SeqLib/FastqReader.h -rw-r--r-- root/root 4281 2023-12-14 22:01 ./usr/include/SeqLib/FermiAssembler.h -rw-r--r-- root/root 6354 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegion.h -rw-r--r-- root/root 19869 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.cpp -rw-r--r-- root/root 11804 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.h -rw-r--r-- root/root 7320 2021-01-07 04:18 ./usr/include/SeqLib/IntervalTree.h -rw-r--r-- root/root 17538 2021-01-07 04:18 ./usr/include/SeqLib/ReadFilter.h -rw-r--r-- root/root 1387 2023-12-14 22:01 ./usr/include/SeqLib/RefGenome.h -rw-r--r-- root/root 3832 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibCommon.h -rw-r--r-- root/root 4176 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibUtils.h -rw-r--r-- root/root 2455 2021-01-07 04:18 ./usr/include/SeqLib/SeqPlot.h -rw-r--r-- root/root 577 2021-01-07 04:18 ./usr/include/SeqLib/ThreadPool.h -rw-r--r-- root/root 2421 2021-01-07 04:18 ./usr/include/SeqLib/UnalignedSequence.h -rw-r--r-- root/root 17078 2021-01-07 04:18 ./usr/include/SeqLib/aho_corasick.hpp drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 1047832 2023-12-14 22:01 ./usr/lib/aarch64-linux-gnu/libseqlib.a lrwxrwxrwx root/root 0 2023-12-14 22:01 ./usr/lib/aarch64-linux-gnu/libseqlib.so -> libseqlib.so.2.0.0 drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/lib/aarch64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 301 2023-12-14 22:01 ./usr/lib/aarch64-linux-gnu/pkgconfig/libseqlib.pc drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/share/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/share/doc/libseqlib-dev/ lrwxrwxrwx root/root 0 2023-12-14 22:01 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz -> ../libseqlib2/changelog.Debian.gz -rw-r--r-- root/root 2658 2023-12-14 22:01 ./usr/share/doc/libseqlib-dev/copyright libseqlib2_1.2.0+dfsg-11_arm64.deb ---------------------------------- new Debian package, version 2.0. size 164542 bytes: control archive=1169 bytes. 1412 bytes, 24 lines control 227 bytes, 3 lines md5sums 39 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libseqlib2 Source: libseqlib Version: 1.2.0+dfsg-11 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 467 Depends: libc6 (>= 2.38), libfml0 (>= 0.1+git20190320.b499514), libgcc-s1 (>= 3.0), libhts3 (>= 1.17), libjsoncpp25 (>= 1.9.5), libssw0 (>= 1.1), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. drwxr-xr-x root/root 0 2023-12-14 22:01 ./ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2023-12-14 22:01 ./usr/lib/aarch64-linux-gnu/libseqlib.so.2 -> libseqlib.so.2.0.0 -rw-r--r-- root/root 461760 2023-12-14 22:01 ./usr/lib/aarch64-linux-gnu/libseqlib.so.2.0.0 drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/share/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-14 22:01 ./usr/share/doc/libseqlib2/ -rw-r--r-- root/root 1718 2023-12-14 22:01 ./usr/share/doc/libseqlib2/changelog.Debian.gz -rw-r--r-- root/root 2658 2023-12-14 22:01 ./usr/share/doc/libseqlib2/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 43904 Build-Time: 30 Distribution: noble-proposed Host Architecture: arm64 Install-Time: 82 Job: libseqlib_1.2.0+dfsg-11.dsc Machine Architecture: arm64 Package: libseqlib Package-Time: 114 Source-Version: 1.2.0+dfsg-11 Space: 43904 Status: successful Version: 1.2.0+dfsg-11 -------------------------------------------------------------------------------- Finished at 2023-12-15T05:15:35Z Build needed 00:01:54, 43904k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27189803 Scanning for processes to kill in build PACKAGEBUILD-27189803