https://launchpad.net/ubuntu/+source/libseqlib/1.2.0+dfsg-9/+build/24168876 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-002 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_214~560~ubuntu20.04.1 python3-lpbuildd_214~560~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 Jul 17:28:38 ntpdate[96291]: adjust time server 10.211.37.1 offset -0.000346 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-24168876 --image-type chroot /home/buildd/filecache-default/71606a5f218d7969dca11cc1a0a8ecfd02d5af78 Creating target for build PACKAGEBUILD-24168876 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-24168876 Starting target for build PACKAGEBUILD-24168876 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-24168876 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24168876 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-24168876 Updating target for build PACKAGEBUILD-24168876 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main riscv64 Packages [1293 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 Packages [13.7 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5758 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 Packages [58.6 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [32.3 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe riscv64 Packages [452 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [191 kB] Fetched 22.6 MB in 32s (706 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libfdisk1 sgml-base util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-riscv64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libidn2-0 libip4tc2 libkeyutils1 liblzma5 libmount1 libncurses6 libncursesw6 libperl5.34 libpng16-16 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base perl-modules-5.34 pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 92 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 77.3 MB of archives. After this operation, 1562 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libcrypt-dev riscv64 1:4.4.28-1ubuntu2 [240 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libcrypt1 riscv64 1:4.4.28-1ubuntu2 [95.9 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main riscv64 base-files riscv64 12.2ubuntu2 [72.9 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main riscv64 bsdutils riscv64 1:2.38-4ubuntu1 [91.0 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libzstd1 riscv64 1.5.2+dfsg-1 [318 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgpg-error0 riscv64 1.45-2 [62.7 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgcrypt20 riscv64 1.10.1-2ubuntu1 [508 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libatomic1 riscv64 12.1.0-5ubuntu1 [7850 B] Get:9 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgomp1 riscv64 12.1.0-5ubuntu1 [111 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-12-base riscv64 12.1.0-5ubuntu1 [19.3 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgcc-s1 riscv64 12.1.0-5ubuntu1 [44.0 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcc1-0 riscv64 12.1.0-5ubuntu1 [42.9 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libstdc++6 riscv64 12.1.0-5ubuntu1 [675 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main riscv64 liblzma5 riscv64 5.2.5-2.1 [93.5 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libblkid1 riscv64 2.38-4ubuntu1 [149 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libuuid1 riscv64 2.38-4ubuntu1 [26.2 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfdisk1 riscv64 2.38-4ubuntu1 [194 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main riscv64 systemd-sysv riscv64 251.2-2ubuntu1 [11.2 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libapparmor1 riscv64 3.0.4-2ubuntu3 [33.8 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libip4tc2 riscv64 1.8.7-1ubuntu6 [18.0 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libselinux1 riscv64 3.4-1 [73.1 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libmount1 riscv64 2.38-4ubuntu1 [157 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libssl3 riscv64 3.0.4-1ubuntu1 [1448 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main riscv64 mount riscv64 2.38-4ubuntu1 [130 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsemanage-common all 3.4-1 [9828 B] Get:26 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsepol2 riscv64 3.4-2 [256 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsemanage2 riscv64 3.4-1 [83.9 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main riscv64 passwd riscv64 1:4.11.1+dfsg1-2ubuntu1 [735 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main riscv64 adduser all 3.121ubuntu1 [150 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main riscv64 systemd riscv64 251.2-2ubuntu1 [4228 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsystemd0 riscv64 251.2-2ubuntu1 [299 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libudev1 riscv64 251.2-2ubuntu1 [74.9 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libapt-pkg6.0 riscv64 2.5.1 [908 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 dpkg riscv64 1.21.9ubuntu1 [1290 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main riscv64 dash riscv64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [82.2 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main riscv64 login riscv64 1:4.11.1+dfsg1-2ubuntu1 [180 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main riscv64 ncurses-bin riscv64 6.3+20220423-2 [176 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libperl5.34 riscv64 5.34.0-5ubuntu1 [4110 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 perl riscv64 5.34.0-5ubuntu1 [231 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 perl-base riscv64 5.34.0-5ubuntu1 [1615 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 perl-modules-5.34 all 5.34.0-5ubuntu1 [2952 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libdb5.3 riscv64 5.3.28+dfsg1-0.10 [664 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsmartcols1 riscv64 2.38-4ubuntu1 [102 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main riscv64 util-linux-extra riscv64 2.38-4ubuntu1 [103 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main riscv64 util-linux riscv64 2.38-4ubuntu1 [1142 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main riscv64 init-system-helpers all 1.64 [38.7 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main riscv64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main riscv64 sgml-base all 1.30 [12.5 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libidn2-0 riscv64 2.3.3-1 [94.0 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgnutls30 riscv64 3.7.6-2ubuntu1 [877 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 gpgv riscv64 2.2.27-3ubuntu3 [193 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main riscv64 apt riscv64 2.5.1 [1336 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main riscv64 logsave riscv64 1.46.5-2ubuntu2 [9366 B] Get:54 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libext2fs2 riscv64 1.46.5-2ubuntu2 [192 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main riscv64 e2fsprogs riscv64 1.46.5-2ubuntu2 [545 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main riscv64 init riscv64 1.64 [5538 B] Get:57 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcap-ng0 riscv64 0.8.3-1 [13.8 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libncurses6 riscv64 6.3+20220423-2 [92.7 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libncursesw6 riscv64 6.3+20220423-2 [127 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libtinfo6 riscv64 6.3+20220423-2 [89.8 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcom-err2 riscv64 1.46.5-2ubuntu2 [8028 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libss2 riscv64 1.46.5-2ubuntu2 [10.7 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main riscv64 mawk riscv64 1.3.4.20200120-3.1 [100 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libkeyutils1 riscv64 1.6.1-3ubuntu1 [8992 B] Get:65 http://ftpmaster.internal/ubuntu kinetic/main riscv64 readline-common all 8.1.2-1.2 [53.6 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libreadline8 riscv64 8.1.2-1.2 [130 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libsqlite3-0 riscv64 3.39.0-2 [576 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main riscv64 openssl riscv64 3.0.4-1ubuntu1 [1139 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpng16-16 riscv64 1.6.37-5 [174 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xz-utils riscv64 5.2.5-2.1 [80.4 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libctf0 riscv64 2.38.90.20220713-1ubuntu1 [98.8 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libctf-nobfd0 riscv64 2.38.90.20220713-1ubuntu1 [101 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libbinutils riscv64 2.38.90.20220713-1ubuntu1 [494 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 binutils riscv64 2.38.90.20220713-1ubuntu1 [3090 B] Get:75 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 binutils-common riscv64 2.38.90.20220713-1ubuntu1 [215 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.38.90.20220713-1ubuntu1 [931 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libasan6 riscv64 11.3.0-4ubuntu1 [2092 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main riscv64 g++-11 riscv64 11.3.0-4ubuntu1 [9259 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-11 riscv64 11.3.0-4ubuntu1 [15.8 MB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libstdc++-11-dev riscv64 11.3.0-4ubuntu1 [4588 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgcc-11-dev riscv64 11.3.0-4ubuntu1 [2279 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main riscv64 cpp-11 riscv64 11.3.0-4ubuntu1 [7948 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-11-base riscv64 11.3.0-4ubuntu1 [20.6 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 dpkg-dev all 1.21.9ubuntu1 [1070 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libdpkg-perl all 1.21.9ubuntu1 [237 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main riscv64 lto-disabled-list all 28 [12.3 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfakeroot riscv64 1.29-1ubuntu1 [26.6 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main riscv64 fakeroot riscv64 1.29-1ubuntu1 [67.6 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libassuan0 riscv64 2.5.5-4 [31.8 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main riscv64 pinentry-curses riscv64 1.2.0-2ubuntu1 [36.1 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 gpg riscv64 2.2.27-3ubuntu3 [483 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 gpgconf riscv64 2.2.27-3ubuntu3 [113 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 gpg-agent riscv64 2.2.27-3ubuntu3 [226 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 linux-libc-dev riscv64 5.19.0-9.9 [1263 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main riscv64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.3 MB in 16s (4733 kB/s) (Reading database ... 13360 files and directories currently installed.) 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Setting up binutils-riscv64-linux-gnu (2.38.90.20220713-1ubuntu1) ... Setting up e2fsprogs (1.46.5-2ubuntu2) ... Setting up binutils (2.38.90.20220713-1ubuntu1) ... Setting up perl (5.34.0-5ubuntu1) ... Setting up libdpkg-perl (1.21.9ubuntu1) ... Setting up libstdc++-11-dev:riscv64 (11.3.0-4ubuntu1) ... Setting up gcc-11 (11.3.0-4ubuntu1) ... Setting up gpgconf (2.2.27-3ubuntu3) ... Setting up gpg (2.2.27-3ubuntu3) ... Setting up gpg-agent (2.2.27-3ubuntu3) ... Setting up g++-11 (11.3.0-4ubuntu1) ... Setting up dpkg-dev (1.21.9ubuntu1) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for debianutils (5.7-0.2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24168876 riscv64 kinetic-proposed -c chroot:build-PACKAGEBUILD-24168876 --arch=riscv64 --dist=kinetic-proposed --nolog libseqlib_1.2.0+dfsg-9.dsc Initiating build PACKAGEBUILD-24168876 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-002.buildd +==============================================================================+ | libseqlib 1.2.0+dfsg-9 (riscv64) Wed, 13 Jul 2022 17:37:23 +0000 | +==============================================================================+ Package: libseqlib Version: 1.2.0+dfsg-9 Source Version: 1.2.0+dfsg-9 Distribution: kinetic-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24168876/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-HDFDGH/resolver-ZP3vxV' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libseqlib_1.2.0+dfsg-9.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libseqlib-HDFDGH/libseqlib-1.2.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-HDFDGH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev, libjsoncpp-dev, libssw-dev, libbz2-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev, libjsoncpp-dev, libssw-dev, libbz2-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [465 B] Get:5 copy:/<>/apt_archive ./ Packages [548 B] Fetched 1970 B in 1s (3937 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libbwa-dev libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libhts-dev libhts3 libhtscodecs2 libicu71 libjsoncpp-dev libjsoncpp25 libldap-2.5-0 liblzma-dev libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssw-dev libssw0 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types pkg-config pkg-kde-tools po-debconf python3 python3-minimal python3.10 python3.10-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser cdbs libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common publicsuffix libsasl2-modules libltdl-dev libwww-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libbwa-dev libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libhts-dev libhts3 libhtscodecs2 libicu71 libjsoncpp-dev libjsoncpp25 libldap-2.5-0 liblzma-dev libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssw-dev libssw0 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types pkg-config pkg-kde-tools po-debconf python3 python3-minimal python3.10 python3.10-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded. 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Setting up libicu71:riscv64 (71.1-3) ... Setting up libpsl5:riscv64 (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.72.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.8ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build6) ... Setting up libnghttp2-14:riscv64 (1.47.0-1) ... Setting up libmagic1:riscv64 (1:5.41-4) ... Setting up libdeflate0:riscv64 (1.12-1) ... Setting up gettext-base (0.21-6) ... Setting up file (1:5.41-4) ... Setting up libfml0:riscv64 (0.1+git20190320.b499514-1) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg-6ubuntu1) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libsigsegv2:riscv64 (2.13-1ubuntu3) ... Setting up autopoint (0.21-6) ... Setting up libjsoncpp25:riscv64 (1.9.5-4) ... Setting up pkg-config (0.29.2-1ubuntu3) ... Setting up d-shlibs (0.104) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg-6ubuntu1) ... Setting up libssh-4:riscv64 (0.9.6-2build1) ... Setting up libbwa-dev (0.7.17-7) ... Setting up liblzma-dev:riscv64 (5.2.5-2.1) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu9) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libmpdec3:riscv64 (2.5.1-2build2) ... Setting up libsub-override-perl (0.09-3) ... Setting up libdeflate-dev:riscv64 (1.12-1) ... Setting up libelf1:riscv64 (0.187-1) ... Setting up libssw0:riscv64 (1.1-13) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1) ... Setting up libbz2-dev:riscv64 (1.0.8-5build1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libjsoncpp-dev:riscv64 (1.9.5-4) ... Setting up libdw1:riscv64 (0.187-1) ... Setting up gettext (0.21-6) ... Setting up libfml-dev:riscv64 (0.1+git20190320.b499514-1) ... Setting up libssw-dev:riscv64 (1.1-13) ... Setting up libtool (2.4.7-4) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libldap-2.5-0:riscv64 (2.5.12+dfsg-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:riscv64 (3.10.5-1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libpython3-stdlib:riscv64 (3.10.4-0ubuntu2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.10 (3.10.5-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:riscv64 (7.83.1-2) ... Setting up python3 (3.10.4-0ubuntu2) ... Setting up libcurl4-gnutls-dev:riscv64 (7.83.1-2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up pkg-kde-tools (0.15.36ubuntu2) ... Setting up libhts3:riscv64 (1.13+ds-2build2) ... Setting up libhts-dev:riscv64 (1.13+ds-2build2) ... Setting up debhelper (13.8ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.38.90.20220713-1ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-11_11.3.0-4ubuntu1 gcc-11_11.3.0-4ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-4ubuntu1 libstdc++6_12.1.0-5ubuntu1 linux-libc-dev_5.19.0-9.9 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.1 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu2 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38.90.20220713-1ubuntu1 binutils-common_2.38.90.20220713-1ubuntu1 binutils-riscv64-linux-gnu_2.38.90.20220713-1ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-4ubuntu1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.8ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-4ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-4ubuntu1 gcc-11-base_11.3.0-4ubuntu1 gcc-12-base_12.1.0-5ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu3 gpg-agent_2.2.27-3ubuntu3 gpgconf_2.2.27-3ubuntu3 gpgv_2.2.27-3ubuntu3 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 init_1.64 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.4-2ubuntu3 libapt-pkg6.0_2.5.1 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-4ubuntu1 libassuan0_2.5.5-4 libatomic1_12.1.0-5ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libbinutils_2.38.90.20220713-1ubuntu1 libblkid1_2.38-4ubuntu1 libbrotli1_1.0.9-2build6 libbwa-dev_0.7.17-7 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcap-ng0_0.8.3-1 libcap2_1:2.44-1build3 libcc1-0_12.1.0-5ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.28-1ubuntu2 libcrypt1_1:4.4.28-1ubuntu2 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38.90.20220713-1ubuntu1 libctf0_2.38.90.20220713-1ubuntu1 libcurl3-gnutls_7.83.1-2 libcurl4-gnutls-dev_7.83.1-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.8ubuntu1 libdeflate-dev_1.12-1 libdeflate0_1.12-1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.9ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfml-dev_0.1+git20190320.b499514-1 libfml0_0.1+git20190320.b499514-1 libgcc-11-dev_11.3.0-4ubuntu1 libgcc-s1_12.1.0-5ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libglib2.0-0_2.72.3-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.6-2ubuntu1 libgomp1_12.1.0-5ubuntu1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.19.2-2 libhogweed6_3.7.3-1build2 libhts-dev_1.13+ds-2build2 libhts3_1.13+ds-2build2 libhtscodecs2_1.2.2-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.24-2build1 libjson-c5_0.16-1 libjsoncpp-dev_1.9.5-4 libjsoncpp25_1.9.5-4 libk5crypto3_1.19.2-2 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkrb5-3_1.19.2-2 libkrb5support0_1.19.2-2 libldap-2.5-0_2.5.12+dfsg-2ubuntu1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.3-2build2 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpdec3_2.5.1-2build2 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1build2 libnghttp2-14_1.47.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5ubuntu1 libpipeline1_1.5.6-1 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libpsl5_0.21.0-1.2build2 libpython3-stdlib_3.10.4-0ubuntu2 libpython3.10-minimal_3.10.5-1 libpython3.10-stdlib_3.10.5-1 libreadline8_8.1.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg-6ubuntu1 libsasl2-modules-db_2.1.28+dfsg-6ubuntu1 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.39.0-2 libss2_1.46.5-2ubuntu2 libssh-4_0.9.6-2build1 libssl3_3.0.4-1ubuntu1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-11-dev_11.3.0-4ubuntu1 libstdc++6_12.1.0-5ubuntu1 libsub-override-perl_0.09-3 libsystemd0_251.2-2ubuntu1 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2build1 libtirpc-dev_1.3.2-2build1 libtirpc3_1.3.2-2build1 libtool_2.4.7-4 libuchardet0_0.0.7-1build2 libudev1_251.2-2ubuntu1 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-9.9 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_28 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.4-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-5ubuntu1 perl-base_5.34.0-5ubuntu1 perl-modules-5.34_5.34.0-5ubuntu1 pinentry-curses_1.2.0-2ubuntu1 pkg-config_0.29.2-1ubuntu3 pkg-kde-tools_0.15.36ubuntu2 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 python3_3.10.4-0ubuntu2 python3-minimal_3.10.4-0ubuntu2 python3.10_3.10.5-1 python3.10-minimal_3.10.5-1 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.2-2ubuntu1 systemd-sysv_251.2-2ubuntu1 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 zlib1g-dev_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libseqlib Binary: libseqlib2, libseqlib-dev Architecture: any Version: 1.2.0+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/walaj/SeqLib Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/libseqlib Vcs-Git: https://salsa.debian.org/med-team/libseqlib.git Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, pkg-kde-tools, libhts-dev, libcurl4-gnutls-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1+git20190320.b499514), libbwa-dev, libjsoncpp-dev, libssw-dev, libbz2-dev Package-List: libseqlib-dev deb libdevel optional arch=any libseqlib2 deb libs optional arch=any Checksums-Sha1: 584cb70cc2d11d595f26ec50763d11ca570395c5 148996 libseqlib_1.2.0+dfsg.orig.tar.xz 89fbbbd8cf6d8daefa7e5b10d1d277da60e9e09f 15116 libseqlib_1.2.0+dfsg-9.debian.tar.xz Checksums-Sha256: 408ee92e5041ff45d9d259d1507ef783e74c565d02e0c623ef0a67a7c387b953 148996 libseqlib_1.2.0+dfsg.orig.tar.xz 31ffae5e373c3977c90df89fc379590093bfa97bd842e2f75762539e4b1510f8 15116 libseqlib_1.2.0+dfsg-9.debian.tar.xz Files: 8d8f26bf4fd751789bbc53bd7319355a 148996 libseqlib_1.2.0+dfsg.orig.tar.xz 75f6ebe1753a906baf2896173ce67e7a 15116 libseqlib_1.2.0+dfsg-9.debian.tar.xz Dgit: a7992faea79ba476bb9f4f25dc3ad5f2b6b1c0c6 debian archive/debian/1.2.0+dfsg-9 https://git.dgit.debian.org/libseqlib -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmLOW9wUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrs0A//UeTq2pFG+aPYvuly6Fx8V8BkoKqm D3Dlogn3UeUjOkLTPQB9ik6qvRBFe0PhmHPLk1sz0Xutl9Sc9E0qzpPLHNev31F4 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libseqlib_1.2.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libseqlib_1.2.0+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying adapt_to_debian_fermi-lite.patch dpkg-source: info: applying fix_fermi-lite_usage.patch dpkg-source: info: applying fix_htslib_usage.patch dpkg-source: info: applying fml_include_path.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying use_debian_packaged_jsoncpp.patch dpkg-source: info: applying use_debian_packaged_ssw.patch dpkg-source: info: applying pkg-config.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24168876 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24168876 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24168876 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libseqlib dpkg-buildpackage: info: source version 1.2.0+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --with pkgkde_symbolshelper dh_clean debian/rules binary-arch dh binary-arch --with pkgkde_symbolshelper dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:6: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:6: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:6: the top level configure.ac:19: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:19: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:19: the top level configure.ac:17: installing './compile' configure.ac:19: installing './config.guess' configure.ac:19: installing './config.sub' configure.ac:4: installing './install-sh' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=riscv64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert riscv64-unknown-linux-gnu file names to riscv64-unknown-linux-gnu format... func_convert_file_noop checking how to convert riscv64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for zlib.h... yes checking for library containing gzopen... -lz checking for library containing lzma_code... -llzma checking for library containing BZ2_bzBuffToBuffDecompress... -lbz2 checking for library containing clock_gettime... none required checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for htslib... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/seqtools/Makefile config.status: creating libseqlib.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j8 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml 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'BamWriter.cpp' || echo './'`BamWriter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamReader.lo `test -f 'BamReader.cpp' || echo './'`BamReader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -fPIC -DPIC -o .libs/libseqlib_la-GenomicRegion.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -fPIC -DPIC -o .libs/libseqlib_la-SeqPlot.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-FastqReader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -fPIC -DPIC -o .libs/libseqlib_la-BFC.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -fPIC -DPIC -o .libs/libseqlib_la-ReadFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamReader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -fPIC -DPIC -o .libs/libseqlib_la-RefGenome.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamWriter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c FastqReader.cpp -o libseqlib_la-FastqReader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RefGenome.cpp -o libseqlib_la-RefGenome.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamWriter.cpp -o libseqlib_la-BamWriter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BFC.cpp -o libseqlib_la-BFC.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BWAWrapper.lo `test -f 'BWAWrapper.cpp' || echo './'`BWAWrapper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -fPIC -DPIC -o .libs/libseqlib_la-BWAWrapper.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SeqPlot.cpp -o libseqlib_la-SeqPlot.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamRecord.lo `test -f 'BamRecord.cpp' || echo './'`BamRecord.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamRecord.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `/usr/bin/pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BamHeader.lo `test -f 'BamHeader.cpp' || echo './'`BamHeader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -fPIC -DPIC -o .libs/libseqlib_la-BamHeader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamReader.cpp -o libseqlib_la-BamReader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BWAWrapper.cpp -o libseqlib_la-BWAWrapper.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -o libseqlib_la-FermiAssembler.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamHeader.cpp -o libseqlib_la-BamHeader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BamRecord.cpp -o libseqlib_la-BamRecord.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ReadFilter.cpp -o libseqlib_la-ReadFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c GenomicRegion.cpp -o libseqlib_la-GenomicRegion.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -std=c++11 -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 2:0 -lfml `/usr/bin/pkg-config --libs htslib` `/usr/bin/pkg-config --libs jsoncpp` -lssw -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libseqlib.la -rpath /usr/lib/riscv64-linux-gnu libseqlib_la-FastqReader.lo libseqlib_la-BFC.lo libseqlib_la-ReadFilter.lo libseqlib_la-SeqPlot.lo libseqlib_la-GenomicRegion.lo libseqlib_la-RefGenome.lo libseqlib_la-BamWriter.lo libseqlib_la-BamReader.lo libseqlib_la-BWAWrapper.lo libseqlib_la-BamRecord.lo libseqlib_la-FermiAssembler.lo libseqlib_la-BamHeader.lo -lbz2 -llzma -lz -pthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-linux-gnu/11/crti.o /usr/lib/gcc/riscv64-linux-gnu/11/crtbeginS.o .libs/libseqlib_la-FastqReader.o .libs/libseqlib_la-BFC.o .libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lfml -lhts -ljsoncpp -lssw -lbz2 -llzma -lz -L/usr/lib/gcc/riscv64-linux-gnu/11 -L/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/11/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/11/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libseqlib.so.2 -o .libs/libseqlib.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libseqlib.so.2" && ln -s "libseqlib.so.2.0.0" "libseqlib.so.2") libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.2.0.0" "libseqlib.so") libtool: link: ar cr .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o libtool: link: ranlib .libs/libseqlib.a libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" ) make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libseqlib-1.2.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' echo "mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib" mkdir -p lib && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a lib make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # Trick to get also headers moved by d-shlibmove cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/SeqLib usr/include \ --override s/libfml0-dev/libfml-dev/ \ --override s/libssw0-dev/libssw-dev/ \ src/.libs/libseqlib.so Library package automatic movement utility --> libfml-dev package exists. --> libhts-dev package exists. --> libjsoncpp-dev package exists. --> libssw-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libseqlib-dev/usr/lib/riscv64-linux-gnu install -d -m 755 debian/libseqlib2/usr/lib/riscv64-linux-gnu mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/riscv64-linux-gnu mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/riscv64-linux-gnu mv /<>/src/.libs/libseqlib.so.2 debian/libseqlib2/usr/lib/riscv64-linux-gnu mv /<>/src/.libs/libseqlib.so.2.0.0 debian/libseqlib2/usr/lib/riscv64-linux-gnu PKGDEV=libseqlib-dev PKGSHL=libseqlib2 install -d -m 755 debian/libseqlib-dev/usr/include mv debian/SeqLib debian/libseqlib-dev/usr/include mkdir -p /<>/debian/libseqlib-dev/usr/lib/riscv64-linux-gnu/pkgconfig mv libseqlib.pc /<>/debian/libseqlib-dev/usr/lib/riscv64-linux-gnu/pkgconfig make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a a687497bb9ec2869dfa327a4f953e5f349bae107 dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol bns_dump used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwa_idx_destroy used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol err_fclose used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol kseq_read used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bns_destroy used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol kseq_init used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol bwa_idx_load used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol mem_reg2aln used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol err_fflush used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol err_xopen_core used by debian/libseqlib2/usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libseqlib2 (in debian/libseqlib2); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib-dev (in debian/libseqlib-dev); do_strip: , oemstrip: pkgstriptranslations: processing libseqlib2-dbgsym (in debian/.debhelper/libseqlib2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libseqlib2/DEBIAN/control, package libseqlib2, directory debian/libseqlib2 pkgstripfiles: processing control file: debian/.debhelper/libseqlib2/dbgsym-root/DEBIAN/control, package libseqlib2-dbgsym, directory debian/.debhelper/libseqlib2/dbgsym-root dpkg-deb: building package 'libseqlib2-dbgsym' in 'debian/.debhelper/scratch-space/build-libseqlib2/libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.deb'. pkgstripfiles: Truncating usr/share/doc/libseqlib2/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package libseqlib2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib2' in '../libseqlib2_1.2.0+dfsg-9_riscv64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libseqlib-dev/DEBIAN/control, package libseqlib-dev, directory debian/libseqlib-dev Searching for duplicated docs in dependency libseqlib2... symlinking changelog.Debian.gz in libseqlib-dev to file in libseqlib2 pkgstripfiles: Running PNG optimization (using 8 cpus) for package libseqlib-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libseqlib-dev' in '../libseqlib-dev_1.2.0+dfsg-9_riscv64.deb'. Renaming libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.deb to libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.ddeb dpkg-genbuildinfo --build=any -O../libseqlib_1.2.0+dfsg-9_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libseqlib_1.2.0+dfsg-9_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-07-13T17:51:17Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libseqlib_1.2.0+dfsg-9_riscv64.changes: --------------------------------------- Format: 1.8 Date: Wed, 13 Jul 2022 07:34:09 +0200 Source: libseqlib Binary: libseqlib-dev libseqlib2 Built-For-Profiles: noudeb Architecture: riscv64 Version: 1.2.0+dfsg-9 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat libseqlib2 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat Closes: 1012992 Changes: libseqlib (1.2.0+dfsg-9) unstable; urgency=medium . * d/control: add myself to uploaders. * d/libseqlib2.symbols.amd64: refresh list of optional symbols. Closes: #1012992 * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 82e9d3eab5ffe81f99d63641ae660b8b64b9f2ea 853126 libseqlib-dev_1.2.0+dfsg-9_riscv64.deb e59b900717e508119ef2482d7c720c0d0fa29914 1737192 libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.ddeb 56fb019bfb187127cb29af73472753a6c6a7ee67 162264 libseqlib2_1.2.0+dfsg-9_riscv64.deb 1564caea8f41ed7eb349dc219bd7f949ec010a8c 7838 libseqlib_1.2.0+dfsg-9_riscv64.buildinfo Checksums-Sha256: 64b7963f3b51f8cb8538b2d9730cc16bfdf7edd881d79dd9f1c87362ebadc34a 853126 libseqlib-dev_1.2.0+dfsg-9_riscv64.deb 02210cc6334bc608f968d31ff0b379092155f984925758d92ddfb73bf71daaf8 1737192 libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.ddeb e68dfdcbb5ee914d6b9720b2a1b0122d55e92535158deb8f2eee15c3559182ee 162264 libseqlib2_1.2.0+dfsg-9_riscv64.deb 4a8c9282ceb15a827cdaf0d3d74b70cd9bfc4373599f72dfd82f4143b85582fa 7838 libseqlib_1.2.0+dfsg-9_riscv64.buildinfo Files: 1ef09be308f6c7d3b03b2597ecc9179a 853126 libdevel optional libseqlib-dev_1.2.0+dfsg-9_riscv64.deb 4510dc55bc5789554a1835364aa25ed1 1737192 debug optional libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.ddeb 8c5247fb1782b4ad25c747a3c8585ac6 162264 libs optional libseqlib2_1.2.0+dfsg-9_riscv64.deb 8560dc58e380f13276a74db94846ab13 7838 science optional libseqlib_1.2.0+dfsg-9_riscv64.buildinfo /<>/libseqlib_1.2.0+dfsg-9_riscv64.changes.new could not be renamed to /<>/libseqlib_1.2.0+dfsg-9_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libseqlib Binary: libseqlib-dev libseqlib2 libseqlib2-dbgsym Architecture: riscv64 Version: 1.2.0+dfsg-9 Checksums-Md5: 1ef09be308f6c7d3b03b2597ecc9179a 853126 libseqlib-dev_1.2.0+dfsg-9_riscv64.deb 4510dc55bc5789554a1835364aa25ed1 1737192 libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.ddeb 8c5247fb1782b4ad25c747a3c8585ac6 162264 libseqlib2_1.2.0+dfsg-9_riscv64.deb Checksums-Sha1: 82e9d3eab5ffe81f99d63641ae660b8b64b9f2ea 853126 libseqlib-dev_1.2.0+dfsg-9_riscv64.deb e59b900717e508119ef2482d7c720c0d0fa29914 1737192 libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.ddeb 56fb019bfb187127cb29af73472753a6c6a7ee67 162264 libseqlib2_1.2.0+dfsg-9_riscv64.deb Checksums-Sha256: 64b7963f3b51f8cb8538b2d9730cc16bfdf7edd881d79dd9f1c87362ebadc34a 853126 libseqlib-dev_1.2.0+dfsg-9_riscv64.deb 02210cc6334bc608f968d31ff0b379092155f984925758d92ddfb73bf71daaf8 1737192 libseqlib2-dbgsym_1.2.0+dfsg-9_riscv64.ddeb e68dfdcbb5ee914d6b9720b2a1b0122d55e92535158deb8f2eee15c3559182ee 162264 libseqlib2_1.2.0+dfsg-9_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Wed, 13 Jul 2022 17:51:11 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), apt (= 2.5.1), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.90.20220713-1ubuntu1), binutils-common (= 2.38.90.20220713-1ubuntu1), binutils-riscv64-linux-gnu (= 2.38.90.20220713-1ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-4ubuntu1), d-shlibs (= 0.104), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.8ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-4ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-4ubuntu1), gcc-11-base (= 11.3.0-4ubuntu1), gcc-12-base (= 12.1.0-5ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), gpgv (= 2.2.27-3ubuntu3), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapt-pkg6.0 (= 2.5.1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-4ubuntu1), libatomic1 (= 12.1.0-5ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.90.20220713-1ubuntu1), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build6), libbwa-dev (= 0.7.17-7), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-5ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-1ubuntu2), libcrypt1 (= 1:4.4.28-1ubuntu2), libctf-nobfd0 (= 2.38.90.20220713-1ubuntu1), libctf0 (= 2.38.90.20220713-1ubuntu1), libcurl3-gnutls (= 7.83.1-2), libcurl4-gnutls-dev (= 7.83.1-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.8ubuntu1), libdeflate-dev (= 1.12-1), libdeflate0 (= 1.12-1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfml-dev (= 0.1+git20190320.b499514-1), libfml0 (= 0.1+git20190320.b499514-1), libgcc-11-dev (= 11.3.0-4ubuntu1), libgcc-s1 (= 12.1.0-5ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libglib2.0-0 (= 2.72.3-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-5ubuntu1), libgpg-error0 (= 1.45-2), libgssapi-krb5-2 (= 1.19.2-2), libhogweed6 (= 3.7.3-1build2), libhts-dev (= 1.13+ds-2build2), libhts3 (= 1.13+ds-2build2), libhtscodecs2 (= 1.2.2-1), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1), libisl23 (= 0.24-2build1), libjsoncpp-dev (= 1.9.5-4), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma-dev (= 5.2.5-2.1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-1), libpsl5 (= 0.21.0-1.2build2), libpython3-stdlib (= 3.10.4-0ubuntu2), libpython3.10-minimal (= 3.10.5-1), libpython3.10-stdlib (= 3.10.5-1), libreadline8 (= 8.1.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libselinux1 (= 3.4-1), libsemanage-common (= 3.4-1), libsemanage2 (= 3.4-1), libsepol2 (= 3.4-2), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.39.0-2), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.4-1ubuntu1), libssw-dev (= 1.1-13), libssw0 (= 1.1-13), libstdc++-11-dev (= 11.3.0-4ubuntu1), libstdc++6 (= 12.1.0-5ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.2-2ubuntu1), libtasn1-6 (= 4.18.0-4build1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.2-2ubuntu1), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-9.9), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 28), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), pkg-config (= 0.29.2-1ubuntu3), pkg-kde-tools (= 0.15.36ubuntu2), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.4-0ubuntu2), python3-minimal (= 3.10.4-0ubuntu2), python3.10 (= 3.10.5-1), python3.10-minimal (= 3.10.5-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), ubuntu-keyring (= 2021.03.26), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1657690449" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libseqlib-dev_1.2.0+dfsg-9_riscv64.deb -------------------------------------- new Debian package, version 2.0. size 853126 bytes: control archive=1665 bytes. 1415 bytes, 26 lines control 1649 bytes, 24 lines md5sums Package: libseqlib-dev Source: libseqlib Version: 1.2.0+dfsg-9 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6487 Depends: libseqlib2 (= 1.2.0+dfsg-9), libfml-dev, libhts-dev, libjsoncpp-dev, libssw-dev, zlib1g-dev, libbwa-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev) C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. . This package contains the header files and static library. drwxr-xr-x root/root 0 2022-07-13 05:34 ./ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/include/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/include/SeqLib/ -rw-r--r-- root/root 3874 2022-07-13 05:34 ./usr/include/SeqLib/BFC.h -rw-r--r-- root/root 7129 2021-01-07 04:18 ./usr/include/SeqLib/BWAWrapper.h -rw-r--r-- root/root 3605 2022-07-13 05:34 ./usr/include/SeqLib/BamHeader.h -rw-r--r-- root/root 9275 2021-01-07 04:18 ./usr/include/SeqLib/BamReader.h -rw-r--r-- root/root 32406 2022-07-13 05:34 ./usr/include/SeqLib/BamRecord.h -rw-r--r-- root/root 1979 2021-01-07 04:18 ./usr/include/SeqLib/BamWalker.h -rw-r--r-- root/root 3473 2021-01-07 04:18 ./usr/include/SeqLib/BamWriter.h -rw-r--r-- root/root 1170 2021-01-07 04:18 ./usr/include/SeqLib/FastqReader.h -rw-r--r-- root/root 4281 2022-07-13 05:34 ./usr/include/SeqLib/FermiAssembler.h -rw-r--r-- root/root 6354 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegion.h -rw-r--r-- root/root 19869 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.cpp -rw-r--r-- root/root 11804 2021-01-07 04:18 ./usr/include/SeqLib/GenomicRegionCollection.h -rw-r--r-- root/root 7320 2021-01-07 04:18 ./usr/include/SeqLib/IntervalTree.h -rw-r--r-- root/root 17538 2021-01-07 04:18 ./usr/include/SeqLib/ReadFilter.h -rw-r--r-- root/root 1387 2022-07-13 05:34 ./usr/include/SeqLib/RefGenome.h -rw-r--r-- root/root 3832 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibCommon.h -rw-r--r-- root/root 4176 2021-01-07 04:18 ./usr/include/SeqLib/SeqLibUtils.h -rw-r--r-- root/root 2455 2021-01-07 04:18 ./usr/include/SeqLib/SeqPlot.h -rw-r--r-- root/root 577 2021-01-07 04:18 ./usr/include/SeqLib/ThreadPool.h -rw-r--r-- root/root 2421 2021-01-07 04:18 ./usr/include/SeqLib/UnalignedSequence.h -rw-r--r-- root/root 17078 2021-01-07 04:18 ./usr/include/SeqLib/aho_corasick.hpp drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/lib/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/lib/riscv64-linux-gnu/ -rw-r--r-- root/root 6448510 2022-07-13 05:34 ./usr/lib/riscv64-linux-gnu/libseqlib.a lrwxrwxrwx root/root 0 2022-07-13 05:34 ./usr/lib/riscv64-linux-gnu/libseqlib.so -> libseqlib.so.2.0.0 drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/lib/riscv64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 301 2022-07-13 05:34 ./usr/lib/riscv64-linux-gnu/pkgconfig/libseqlib.pc drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/share/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/share/doc/libseqlib-dev/ lrwxrwxrwx root/root 0 2022-07-13 05:34 ./usr/share/doc/libseqlib-dev/changelog.Debian.gz -> ../libseqlib2/changelog.Debian.gz -rw-r--r-- root/root 2658 2022-07-13 05:34 ./usr/share/doc/libseqlib-dev/copyright libseqlib2_1.2.0+dfsg-9_riscv64.deb ----------------------------------- new Debian package, version 2.0. size 162264 bytes: control archive=1161 bytes. 1411 bytes, 24 lines control 227 bytes, 3 lines md5sums 39 bytes, 1 lines shlibs 72 bytes, 2 lines triggers Package: libseqlib2 Source: libseqlib Version: 1.2.0+dfsg-9 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 397 Depends: libc6 (>= 2.33), libfml0 (>= 0.1+git20190320.b499514), libgcc-s1 (>= 3.4), libhts3 (>= 1.10), libjsoncpp25 (>= 1.9.5), libssw0 (>= 1.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/walaj/SeqLib Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment. drwxr-xr-x root/root 0 2022-07-13 05:34 ./ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/lib/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/lib/riscv64-linux-gnu/ lrwxrwxrwx root/root 0 2022-07-13 05:34 ./usr/lib/riscv64-linux-gnu/libseqlib.so.2 -> libseqlib.so.2.0.0 -rw-r--r-- root/root 388312 2022-07-13 05:34 ./usr/lib/riscv64-linux-gnu/libseqlib.so.2.0.0 drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/share/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-07-13 05:34 ./usr/share/doc/libseqlib2/ -rw-r--r-- root/root 949 2022-07-13 05:34 ./usr/share/doc/libseqlib2/changelog.Debian.gz -rw-r--r-- root/root 2658 2022-07-13 05:34 ./usr/share/doc/libseqlib2/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 69116 Build-Time: 558 Distribution: kinetic-proposed Host Architecture: riscv64 Install-Time: 250 Job: libseqlib_1.2.0+dfsg-9.dsc Machine Architecture: riscv64 Package: libseqlib Package-Time: 834 Source-Version: 1.2.0+dfsg-9 Space: 69116 Status: successful Version: 1.2.0+dfsg-9 -------------------------------------------------------------------------------- Finished at 2022-07-13T17:51:17Z Build needed 00:13:54, 69116k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-24168876 Scanning for processes to kill in build PACKAGEBUILD-24168876 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-24168876 Stopping target for build PACKAGEBUILD-24168876 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-24168876 Removing build PACKAGEBUILD-24168876