https://launchpad.net/ubuntu/+source/libslow5lib/0.7.0+dfsg-1/+build/24612766 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-016 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:09:03 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 6 Nov 08:25:54 ntpdate[1737]: adjust time server 10.211.37.1 offset 0.015523 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24612766 --image-type chroot /home/buildd/filecache-default/bee0bc12d37b7f8f5575cac6dd1465e088af1717 Creating target for build PACKAGEBUILD-24612766 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24612766 Starting target for build PACKAGEBUILD-24612766 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24612766 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24612766 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24612766 Updating target for build PACKAGEBUILD-24612766 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main armhf Packages [1324 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe armhf Packages [13.9 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5791 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf Packages [334 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [141 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf Packages [1780 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [1177 kB] Fetched 25.4 MB in 9s (2728 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common cpp-12 debianutils fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan8 libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libfakeroot libffi8 libgcc-12-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libidn2-0 libjson-c5 liblz4-1 liblzma5 libp11-kit0 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libubsan1 libudev1 libunistring2 linux-libc-dev lto-disabled-list perl perl-base readline-common sgml-base systemd systemd-sysv tzdata usrmerge xz-utils zlib1g 79 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 72.6 MB of archives. After this operation, 42.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcrypt-dev armhf 1:4.4.30-1 [120 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main armhf libc6-dev armhf 2.36-0ubuntu4 [1338 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main armhf libc-dev-bin armhf 2.36-0ubuntu4 [18.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcrypt1 armhf 1:4.4.30-1 [91.1 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf linux-libc-dev armhf 5.19.0-23.24 [1306 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main armhf libcc1-0 armhf 12.2.0-9ubuntu1 [38.9 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main armhf gcc-12-base armhf 12.2.0-9ubuntu1 [19.5 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main armhf libgcc-s1 armhf 12.2.0-9ubuntu1 [41.3 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main armhf libgomp1 armhf 12.2.0-9ubuntu1 [109 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main armhf libatomic1 armhf 12.2.0-9ubuntu1 [7652 B] Get:11 http://ftpmaster.internal/ubuntu lunar/main armhf libasan8 armhf 12.2.0-9ubuntu1 [2383 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main armhf libubsan1 armhf 12.2.0-9ubuntu1 [950 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main armhf g++-12 armhf 12.2.0-9ubuntu1 [9309 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main armhf libstdc++-12-dev armhf 12.2.0-9ubuntu1 [2238 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main armhf libgcc-12-dev armhf 12.2.0-9ubuntu1 [857 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main armhf gcc-12 armhf 12.2.0-9ubuntu1 [16.2 MB] Get:17 http://ftpmaster.internal/ubuntu lunar/main armhf cpp-12 armhf 12.2.0-9ubuntu1 [8151 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main armhf libstdc++6 armhf 12.2.0-9ubuntu1 [603 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf zlib1g armhf 1:1.2.11.dfsg-4.1ubuntu2 [51.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libctf0 armhf 2.39-8ubuntu2 [85.9 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libctf-nobfd0 armhf 2.39-8ubuntu2 [85.4 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libbinutils armhf 2.39-8ubuntu2 [438 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils-common armhf 2.39-8ubuntu2 [223 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils armhf 2.39-8ubuntu2 [3106 B] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.39-8ubuntu2 [2764 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main armhf libc6 armhf 2.36-0ubuntu4 [2518 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main armhf base-files armhf 12.3ubuntu1 [73.3 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf debianutils armhf 5.7-0.4 [102 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main armhf bash armhf 5.2-1ubuntu2 [670 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf grep armhf 3.8-3 [155 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libperl5.36 armhf 5.36.0-4ubuntu2 [4043 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl armhf 5.36.0-4ubuntu2 [235 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl-base armhf 5.36.0-4ubuntu2 [1621 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgdbm6 armhf 1.23-3 [29.8 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgdbm-compat4 armhf 1.23-3 [6026 B] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libselinux1 armhf 3.4-1build1 [69.3 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf base-passwd armhf 3.6.1 [49.7 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main armhf usrmerge all 29ubuntu2 [55.8 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf init-system-helpers all 1.65.2 [38.1 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main armhf libc-bin armhf 2.36-0ubuntu4 [536 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf liblz4-1 armhf 1.9.4-1 [57.6 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf liblzma5 armhf 5.2.7-0.1 [88.1 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libapparmor1 armhf 3.0.7-1ubuntu3 [32.3 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcap-ng0 armhf 0.8.3-1build1 [13.5 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libaudit1 armhf 1:3.0.7-1ubuntu2 [42.7 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libseccomp2 armhf 2.5.4-1ubuntu2 [45.9 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main armhf systemd-sysv armhf 251.4-1ubuntu7 [11.2 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main armhf systemd armhf 251.4-1ubuntu7 [2785 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main armhf libsystemd-shared armhf 251.4-1ubuntu7 [1609 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main armhf libsystemd0 armhf 251.4-1ubuntu7 [301 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main armhf libudev1 armhf 251.4-1ubuntu7 [72.9 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libapt-pkg6.0 armhf 2.5.4 [911 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgpg-error0 armhf 1.46-1 [60.4 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gpgv armhf 2.2.40-1ubuntu1 [193 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libunistring2 armhf 1.0-2 [516 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main armhf libidn2-0 armhf 2.3.3-1build1 [92.6 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libffi8 armhf 3.4.4-1 [20.2 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main armhf libp11-kit0 armhf 0.24.1-1ubuntu2 [211 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libtasn1-6 armhf 4.19.0-2 [36.0 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main armhf libgnutls30 armhf 3.7.7-2ubuntu2 [929 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf apt armhf 2.5.4 [1371 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf init armhf 1.65.2 [4810 B] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf sgml-base all 1.31 [11.4 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main armhf libsemanage-common all 3.4-1build1 [9544 B] Get:67 http://ftpmaster.internal/ubuntu lunar/main armhf libsemanage2 armhf 3.4-1build1 [83.7 kB] Get:68 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libjson-c5 armhf 0.16-2 [29.0 kB] Get:69 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf readline-common all 8.2-1.1 [55.1 kB] Get:70 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libreadline8 armhf 8.2-1.1 [128 kB] Get:71 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsqlite3-0 armhf 3.39.4-1 [561 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main armhf tzdata all 2022f-0ubuntu1 [400 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main armhf libpng16-16 armhf 1.6.38-2 [166 kB] Get:74 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf xz-utils armhf 5.2.7-0.1 [142 kB] Get:75 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libfakeroot armhf 1.30.1-1ubuntu1 [26.4 kB] Get:76 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf fakeroot armhf 1.30.1-1ubuntu1 [61.6 kB] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libassuan0 armhf 2.5.5-5 [30.6 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gpg armhf 2.2.40-1ubuntu1 [482 kB] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gpgconf armhf 2.2.40-1ubuntu1 [117 kB] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gpg-agent armhf 2.2.40-1ubuntu1 [236 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main armhf lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 72.6 MB in 1min 4s (1129 kB/s) (Reading database ... 13303 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Sun Nov 6 08:27:47 UTC 2022. Universal Time is now: Sun Nov 6 08:27:47 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.30.1-1ubuntu1) ... Setting up perl-modules-5.36 (5.36.0-4ubuntu2) ... Setting up xz-utils (5.2.7-0.1) ... Setting up libpng16-16:armhf (1.6.38-2) ... Setting up libatomic1:armhf (12.2.0-9ubuntu1) ... Setting up libubsan1:armhf (12.2.0-9ubuntu1) ... Setting up libcrypt-dev:armhf (1:4.4.30-1) ... Setting up libasan8:armhf (12.2.0-9ubuntu1) ... Setting up sgml-base (1.31) ... Setting up libbinutils:armhf (2.39-8ubuntu2) ... Setting up libc-dev-bin (2.36-0ubuntu4) ... Setting up libjson-c5:armhf (0.16-2) ... Setting up readline-common (8.2-1.1) ... Setting up libcc1-0:armhf (12.2.0-9ubuntu1) ... Setting up libgdbm6:armhf (1.23-3) ... Setting up libctf0:armhf (2.39-8ubuntu2) ... Setting up libreadline8:armhf (8.2-1.1) ... Setting up libgcc-12-dev:armhf (12.2.0-9ubuntu1) ... Setting up libgdbm-compat4:armhf (1.23-3) ... Setting up gpgconf (2.2.40-1ubuntu1) ... Setting up libc6-dev:armhf (2.36-0ubuntu4) ... Setting up binutils-arm-linux-gnueabihf (2.39-8ubuntu2) ... Setting up libperl5.36:armhf (5.36.0-4ubuntu2) ... Setting up gpg (2.2.40-1ubuntu1) ... Setting up gpg-agent (2.2.40-1ubuntu1) ... Setting up libstdc++-12-dev:armhf (12.2.0-9ubuntu1) ... Setting up binutils (2.39-8ubuntu2) ... Setting up perl (5.36.0-4ubuntu2) ... Setting up gcc-12 (12.2.0-9ubuntu1) ... Setting up g++-12 (12.2.0-9ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24612766 armhf lunar-proposed -c chroot:build-PACKAGEBUILD-24612766 --arch=armhf --dist=lunar-proposed --nolog libslow5lib_0.7.0+dfsg-1.dsc Initiating build PACKAGEBUILD-24612766 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:09:03 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-016.buildd +==============================================================================+ | libslow5lib 0.7.0+dfsg-1 (armhf) Sun, 06 Nov 2022 08:27:51 +0000 | +==============================================================================+ Package: libslow5lib Version: 0.7.0+dfsg-1 Source Version: 0.7.0+dfsg-1 Distribution: lunar-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24612766/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libslow5lib-pJq6JZ/resolver-ZuozfY' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libslow5lib_0.7.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libslow5lib-pJq6JZ/libslow5lib-0.7.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libslow5lib-pJq6JZ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, dh-python, python3-all, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, dh-python, python3-all, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [442 B] Get:5 copy:/<>/apt_archive ./ Packages [525 B] Fetched 1924 B in 0s (59.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data cython3 d-shlibs debhelper debugedit dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libblas3 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu71 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp25 liblapack3 libldap-2.5-0 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libstreamvbyte-dev libstreamvbyte0 libsub-override-perl libtool libuchardet0 libuv1 libxml2 libzstd-dev m4 man-db media-types po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-setuptools python3-wheel python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cmake-format cython-doc dh-make flit python3-build python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv gfortran python-numpy-doc python3-pytest python-setuptools-doc python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data cython3 d-shlibs debhelper debugedit dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libblas3 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu71 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp25 liblapack3 libldap-2.5-0 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libstreamvbyte-dev libstreamvbyte0 libsub-override-perl libtool libuchardet0 libuv1 libxml2 libzstd-dev m4 man-db media-types po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-setuptools python3-wheel python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu lunar/main armhf python3.11-dev armhf 3.11.0-1 [613 kB] Get:91 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf python3-all-dev armhf 3.10.6-1ubuntu1 [920 B] Get:92 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf python3-numpy armhf 1:1.21.5-1ubuntu1 [4846 kB] Get:93 http://ftpmaster.internal/ubuntu lunar/main armhf python3-setuptools all 59.6.0-1.2 [339 kB] Get:94 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf python3-wheel all 0.38.0-1 [30.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.7 MB in 25s (2385 kB/s) Selecting previously unselected package libpython3.10-minimal:armhf. (Reading database ... 15268 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.8-1_armhf.deb ... Unpacking libpython3.10-minimal:armhf (3.10.8-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.8-1_armhf.deb ... Unpacking python3.10-minimal (3.10.8-1) ... Setting up libpython3.10-minimal:armhf (3.10.8-1) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.10-minimal (3.10.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15570 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.6-1ubuntu1_armhf.deb ... Unpacking python3-minimal (3.10.6-1ubuntu1) ... Selecting previously unselected package media-types. 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Setting up libnghttp2-14:armhf (1.50.0-1) ... Setting up libmagic1:armhf (1:5.41-4) ... Setting up gettext-base (0.21-8) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-6ubuntu2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.10.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libuv1:armhf (1.44.2-1) ... Setting up libexpat1-dev:armhf (2.5.0-1) ... Setting up emacsen-common (3.0.4) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Setting up dh-elpa-helper (2.0.9ubuntu1) ... Setting up libstreamvbyte-dev:armhf (0.4.1-4) ... Setting up autopoint (0.21-8) ... Setting up libjsoncpp25:armhf (1.9.5-4) ... Setting up d-shlibs (0.104) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-6ubuntu2) ... Setting up libssh-4:armhf (0.10.4-2) ... Setting up libgfortran5:armhf (12.2.0-9ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-4.1ubuntu2) ... Setting up librhash0:armhf (1.4.2-1ubuntu1) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libmpdec3:armhf (2.5.1-2build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up cmake-data (3.24.3-1ubuntu1) ... Setting up libpython3.11-minimal:armhf (3.11.0-1) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up libelf1:armhf (0.187-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up python3.11-minimal (3.11.0-1) ... Setting up libdw1:armhf (0.187-4) ... Setting up liblapack3:armhf (3.10.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.21-8) ... Setting up libtool (2.4.7-4) ... Setting up libarchive13:armhf (3.6.0-1ubuntu1) ... Setting up libpython3.11-stdlib:armhf (3.11.0-1) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libpython3.10-stdlib:armhf (3.10.8-1) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (4.5.0-4) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:armhf (7.86.0-1) ... Setting up libpython3-stdlib:armhf (3.10.6-1ubuntu1) ... Setting up python3.11 (3.11.0-1) ... Setting up libpython3.10:armhf (3.10.8-1) ... Setting up python3.10 (3.10.8-1) ... Setting up libpython3.11:armhf (3.11.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.10.6-1ubuntu1) ... Setting up man-db (2.11.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython3.11-dev:armhf (3.11.0-1) ... Setting up cython3 (0.29.30-1ubuntu2) ... Setting up libpython3.10-dev:armhf (3.10.8-1) ... Setting up python3.10-dev (3.10.8-1) ... Setting up cmake (3.24.3-1ubuntu1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.8-1) ... Setting up dh-python (5.20221008) ... Setting up libpython3-dev:armhf (3.10.6-1ubuntu1) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up python3.11-dev (3.11.0-1) ... Setting up python3-all (3.10.6-1ubuntu1) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up python3-wheel (0.38.0-1) ... Setting up libpython3-all-dev:armhf (3.10.6-1ubuntu1) ... Setting up python3-dev (3.10.6-1ubuntu1) ... Setting up python3-numpy (1:1.21.5-1ubuntu1) ... Setting up python3-all-dev (3.10.6-1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:09:03 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39-8ubuntu2 binutils-arm-linux-gnueabihf_2.39-8ubuntu2 binutils-common_2.39-8ubuntu2 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 cmake_3.24.3-1ubuntu1 cmake-data_3.24.3-1ubuntu1 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-9ubuntu1 cython3_0.29.30-1ubuntu2 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-elpa-helper_2.0.9ubuntu1 dh-python_5.20221008 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14+20220924-2 e2fsprogs_1.46.5-2ubuntu2 emacsen-common_3.0.4 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-9ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-9ubuntu1 gcc-12-base_12.2.0-9ubuntu1 gettext_0.21-8 gettext-base_0.21-8 gpg_2.2.40-1ubuntu1 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libslow5-dev, python3-slow5 Architecture: any Version: 0.7.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/hasindu2008/slow5lib Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/libslow5lib Vcs-Git: https://salsa.debian.org/med-team/libslow5lib.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libstreamvbyte-dev, python3-all, zlib1g-dev Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, dh-python, python3-all, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel Package-List: libslow5-0 deb libs optional arch=any libslow5-dev deb libdevel optional arch=any python3-slow5 deb python optional arch=any Checksums-Sha1: cbad8da474b7d88ed5f766eaa2d9db2c85e1f3a3 2014308 libslow5lib_0.7.0+dfsg.orig.tar.xz 8f04286bf561bbba9a0d4df6b0a6c86648ca268e 7524 libslow5lib_0.7.0+dfsg-1.debian.tar.xz Checksums-Sha256: 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Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24612766 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24612766 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24612766 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libslow5lib dpkg-buildpackage: info: source version 0.7.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives dh clean --with python3 --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives dh binary-arch --with python3 --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives dh_auto_configure -- \ -DSLOW5_USE_ZSTD="ON" cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DSLOW5_USE_ZSTD=ON .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_configure --buildsystem=pybuild I: pybuild base:240: dh_auto_configure --buildsystem=cmake --builddirectory=/<>/.pybuild/cpython3_3.11_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.11 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython_EXECUTABLE=/usr/bin/python3.11 -DPython_LIBRARY=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPython_INCLUDE_DIR=/usr/include/python3.11 -DPython3_EXECUTABLE=/usr/bin/python3.11 -DPython3_LIBRARY=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPython3_INCLUDE_DIR=/usr/include/python3.11 cd .pybuild/cpython3_3.11_slow5/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.11 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython_EXECUTABLE=/usr/bin/python3.11 -DPython_LIBRARY=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPython_INCLUDE_DIR=/usr/include/python3.11 -DPython3_EXECUTABLE=/usr/bin/python3.11 -DPython3_LIBRARY=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPython3_INCLUDE_DIR=/usr/include/python3.11 ../../.. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PYTHON_EXECUTABLE PYTHON_INCLUDE_DIR PYTHON_LIBRARY Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY -- Build files have been written to: /<>/.pybuild/cpython3_3.11_slow5/build I: pybuild base:240: dh_auto_configure --buildsystem=cmake --builddirectory=/<>/.pybuild/cpython3_3.10_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.10 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.10/config-3.10-arm-linux-gnueabihf/libpython3.10.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.10 -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_LIBRARY=/usr/lib/python3.10/config-3.10-arm-linux-gnueabihf/libpython3.10.so -DPython_INCLUDE_DIR=/usr/include/python3.10 -DPython3_EXECUTABLE=/usr/bin/python3.10 -DPython3_LIBRARY=/usr/lib/python3.10/config-3.10-arm-linux-gnueabihf/libpython3.10.so -DPython3_INCLUDE_DIR=/usr/include/python3.10 cd .pybuild/cpython3_3.10_slow5/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.10 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.10/config-3.10-arm-linux-gnueabihf/libpython3.10.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.10 -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_LIBRARY=/usr/lib/python3.10/config-3.10-arm-linux-gnueabihf/libpython3.10.so -DPython_INCLUDE_DIR=/usr/include/python3.10 -DPython3_EXECUTABLE=/usr/bin/python3.10 -DPython3_LIBRARY=/usr/lib/python3.10/config-3.10-arm-linux-gnueabihf/libpython3.10.so -DPython3_INCLUDE_DIR=/usr/include/python3.10 ../../.. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PYTHON_EXECUTABLE PYTHON_INCLUDE_DIR PYTHON_LIBRARY Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY -- Build files have been written to: /<>/.pybuild/cpython3_3.10_slow5/build make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives dh_auto_build cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/depend make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/CMakeFiles/slow5_static.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/CMakeFiles/slow5.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/build make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 10%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o [ 20%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /<>/src/slow5.c /usr/bin/cc -D_GLIBCXX_DEBUG -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /<>/src/slow5.c [ 30%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /<>/src/slow5_idx.c [ 40%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /<>/src/slow5_idx.c In file included from /<>/include/slow5/slow5.h:55, from /<>/src/slow5.c:40: /<>/src/slow5.c: In function ‘slow5_get_mem’: /<>/include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /<>/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ In file included from /<>/include/slow5/slow5.h:55, from /<>/src/slow5.c:40: /<>/src/slow5.c: In function ‘slow5_get_mem’: /<>/include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /<>/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ /<>/src/slow5.c: In function ‘slow5_rec_aux_parse’: /<>/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /<>/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ /<>/src/slow5.c: In function ‘slow5_rec_aux_parse’: /<>/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /<>/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ [ 50%] Building C object CMakeFiles/slow5_static.dir/src/slow5_misc.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -c /<>/src/slow5_misc.c [ 60%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /<>/src/slow5_misc.c [ 70%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_press.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -c /<>/src/slow5_press.c [ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_press.c.o -MF CMakeFiles/slow5.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5.dir/src/slow5_press.c.o -c /<>/src/slow5_press.c /<>/src/slow5_press.c: In function ‘ptr_depress_svb_zd’: /<>/src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); | ^~~~ | | | int16_t * {aka short int *} In file included from /<>/src/slow5_press.c:12: /usr/include/streamvbyte_zigzag.h:36:57: note: expected ‘int32_t *’ {aka ‘int *’} but argument is of type ‘int16_t *’ {aka ‘short int *’} 36 | void zigzag_delta_decode(const uint32_t * in, int32_t * out, size_t N, int32_t prev); | ~~~~~~~~~~^~~ /<>/src/slow5_press.c: In function ‘ptr_depress_svb_zd’: /<>/src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); | ^~~~ | | | int16_t * {aka short int *} In file included from /<>/src/slow5_press.c:12: /usr/include/streamvbyte_zigzag.h:36:57: note: expected ‘int32_t *’ {aka ‘int *’} but argument is of type ‘int16_t *’ {aka ‘short int *’} 36 | void zigzag_delta_decode(const uint32_t * in, int32_t * out, size_t N, int32_t prev); | ~~~~~~~~~~^~~ [ 90%] Linking C shared library libslow5.so /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd [100%] Linking C static library libslow5_static.a /usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 /usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so /usr/bin/ar qc libslow5_static.a CMakeFiles/slow5_static.dir/src/slow5.c.o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/ranlib libslow5_static.a make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target slow5 [100%] Built target slow5_static make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' for py in `py3versions -s`; do \ $py setup.py build; \ done running build running build_ext cythoning python/pyslow5.pyx to python/pyslow5.c building 'pyslow5' extension creating build creating build/temp.linux-armv7l-3.11 creating build/temp.linux-armv7l-3.11/python creating build/temp.linux-armv7l-3.11/src arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c python/pyslow5.c -o build/temp.linux-armv7l-3.11/python/pyslow5.o -g -Wall -O2 -std=c99 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from python/pyslow5.c:702: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’: python/pyslow5.c:37159:38: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 37159 | __pyx_t_8 = ((__pyx_v_ret < 0) != 0); | ~~~~~~~~~~~~~~~~~~~^~~~~ python/pyslow5.c:35036:8: note: ‘__pyx_v_ret’ was declared here 35036 | long __pyx_v_ret; | ^~~~~~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’: python/pyslow5.c:41011:42: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 41011 | __pyx_t_4 = ((__pyx_v_ret < 0) != 0); | ~~~~~~~~~~~~~~~~~~~^~~~~ python/pyslow5.c:37702:8: note: ‘__pyx_v_ret’ was declared here 37702 | long __pyx_v_ret; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c python/slow5threads.c -o build/temp.linux-armv7l-3.11/python/slow5threads.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/slow5.c -o build/temp.linux-armv7l-3.11/src/slow5.o -g -Wall -O2 -std=c99 src/slow5.c: In function ‘slow5_init’: src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_init_empty’: src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_get_mem’: src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { | ^~ In file included from include/slow5/slow5.h:55, from src/slow5.c:40: include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ src/slow5.c: In function ‘slow5_rec_aux_parse’: include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/slow5_idx.c -o build/temp.linux-armv7l-3.11/src/slow5_idx.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/slow5_misc.c -o build/temp.linux-armv7l-3.11/src/slow5_misc.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/slow5_press.c -o build/temp.linux-armv7l-3.11/src/slow5_press.o -g -Wall -O2 -std=c99 src/slow5_press.c: In function ‘slow5_fwrite_compress’: src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 558 | if (bytes != size * nmemb || ferror(fp)) { | ^~ src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 559 | if (bytes != size * nmemb) { | ^~ src/slow5_press.c: In function ‘slow5_pread_depress_solo’: src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 686 | if ((ret = pread(fd, raw, count, offset)) != count) { | ^~ src/slow5_press.c: In function ‘ptr_depress_svb_zd’: src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); | ^~~~ | | | int16_t * {aka short int *} In file included from src/slow5_press.c:12: /usr/include/streamvbyte_zigzag.h:36:57: note: expected ‘int32_t *’ {aka ‘int *’} but argument is of type ‘int16_t *’ {aka ‘short int *’} 36 | void zigzag_delta_decode(const uint32_t * in, int32_t * out, size_t N, int32_t prev); | ~~~~~~~~~~^~~ creating build/lib.linux-armv7l-3.11 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.11/python/pyslow5.o build/temp.linux-armv7l-3.11/python/slow5threads.o build/temp.linux-armv7l-3.11/src/slow5.o build/temp.linux-armv7l-3.11/src/slow5_idx.o build/temp.linux-armv7l-3.11/src/slow5_misc.o build/temp.linux-armv7l-3.11/src/slow5_press.o -L. -lm -lz -lstreamvbyte -o build/lib.linux-armv7l-3.11/pyslow5.cpython-311-arm-linux-gnueabihf.so running build running build_ext cythoning python/pyslow5.pyx to python/pyslow5.c building 'pyslow5' extension creating build/temp.linux-armv7l-3.10 creating build/temp.linux-armv7l-3.10/python creating build/temp.linux-armv7l-3.10/src arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c python/pyslow5.c -o build/temp.linux-armv7l-3.10/python/pyslow5.o -g -Wall -O2 -std=c99 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from python/pyslow5.c:702: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’: python/pyslow5.c:37159:38: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 37159 | __pyx_t_8 = ((__pyx_v_ret < 0) != 0); | ~~~~~~~~~~~~~~~~~~~^~~~~ python/pyslow5.c:35036:8: note: ‘__pyx_v_ret’ was declared here 35036 | long __pyx_v_ret; | ^~~~~~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’: python/pyslow5.c:41011:42: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 41011 | __pyx_t_4 = ((__pyx_v_ret < 0) != 0); | ~~~~~~~~~~~~~~~~~~~^~~~~ python/pyslow5.c:37702:8: note: ‘__pyx_v_ret’ was declared here 37702 | long __pyx_v_ret; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c python/slow5threads.c -o build/temp.linux-armv7l-3.10/python/slow5threads.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/slow5.c -o build/temp.linux-armv7l-3.10/src/slow5.o -g -Wall -O2 -std=c99 src/slow5.c: In function ‘slow5_init’: src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_init_empty’: src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_get_mem’: src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { | ^~ In file included from include/slow5/slow5.h:55, from src/slow5.c:40: include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ src/slow5.c: In function ‘slow5_rec_aux_parse’: include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/slow5_idx.c -o build/temp.linux-armv7l-3.10/src/slow5_idx.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/slow5_misc.c -o build/temp.linux-armv7l-3.10/src/slow5_misc.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/slow5_press.c -o build/temp.linux-armv7l-3.10/src/slow5_press.o -g -Wall -O2 -std=c99 src/slow5_press.c: In function ‘slow5_fwrite_compress’: src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 558 | if (bytes != size * nmemb || ferror(fp)) { | ^~ src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 559 | if (bytes != size * nmemb) { | ^~ src/slow5_press.c: In function ‘slow5_pread_depress_solo’: src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 686 | if ((ret = pread(fd, raw, count, offset)) != count) { | ^~ src/slow5_press.c: In function ‘ptr_depress_svb_zd’: src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); | ^~~~ | | | int16_t * {aka short int *} In file included from src/slow5_press.c:12: /usr/include/streamvbyte_zigzag.h:36:57: note: expected ‘int32_t *’ {aka ‘int *’} but argument is of type ‘int16_t *’ {aka ‘short int *’} 36 | void zigzag_delta_decode(const uint32_t * in, int32_t * out, size_t N, int32_t prev); | ~~~~~~~~~~^~~ creating build/lib.linux-armv7l-3.10 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.10/python/pyslow5.o build/temp.linux-armv7l-3.10/python/slow5threads.o build/temp.linux-armv7l-3.10/src/slow5.o build/temp.linux-armv7l-3.10/src/slow5_idx.o build/temp.linux-armv7l-3.10/src/slow5_misc.o build/temp.linux-armv7l-3.10/src/slow5_press.o -L. -lm -lz -lstreamvbyte -o build/lib.linux-armv7l-3.10/pyslow5.cpython-310-arm-linux-gnueabihf.so make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives mkdir -p lib cp -a obj-arm-linux-gnueabihf/libslow5_static.a lib/libslow5.a /usr/bin/make -C test zstd=1 make[2]: Entering directory '/<>/test' mkdir bin cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ endian_test.c -o bin/endian_test -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_helpers.c -o bin/unit_test_helpers -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_press.c -o bin/unit_test_press -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_ascii.c -o bin/unit_test_ascii -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_binary.c -o bin/unit_test_binary -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ convert_slow5_test.c -o bin/convert_slow5_test -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_two_rg.c -o bin/unit_test_two_rg -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_lossless.c -o bin/unit_test_lossless -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_empty.c -o bin/unit_test_empty -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_enum.c -o bin/unit_test_enum -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd make[2]: Leaving directory '/<>/test' PYTHONPATH=/<>/build/`basename /<>/build/lib.linux-armv7l-*` python3 -m unittest -v python/test.py test_nonExistant_aux (python.test.TestAUX) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example2.slow5.idx'. 06-Nov-22 08:33:12 - [WARNING]: get_read unknown aux name: noExistTest ok test_read_id (python.test.TestAUX) ... 06-Nov-22 08:33:12 - [WARNING]: get_read unknown aux name: noExistTest ok test_read_number (python.test.TestAUX) ... 06-Nov-22 08:33:12 - [WARNING]: get_read unknown aux name: noExistTest ok test_start_mux (python.test.TestAUX) ... 06-Nov-22 08:33:12 - [WARNING]: get_read unknown aux name: noExistTest ok test_get_aux_names (python.test.TestAuxAll) ... ok test_get_aux_types (python.test.TestAuxAll) ... ok test_get_read_all_aux (python.test.TestAuxAll) ... ok test_seq_reads_pA_aux_all (python.test.TestAuxAll) ... ok test_class_methods (python.test.TestBase) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example.slow5.idx'. ok test_digitisation (python.test.TestBase) ... ok test_len_raw_signal (python.test.TestBase) ... ok test_offset (python.test.TestBase) ... ok test_pylen_signal (python.test.TestBase) ... ok test_range (python.test.TestBase) ... ok test_read_group (python.test.TestBase) ... ok test_read_id (python.test.TestBase) ... ok test_read_type (python.test.TestBase) ... ok test_sampling_rate (python.test.TestBase) ... ok test_signal (python.test.TestBase) ... ok test_get_all_headers (python.test.TestHeaders) ... ok test_get_header_names (python.test.TestHeaders) ... ok test_digitisation (python.test.TestRandomAccess) ... ok test_len_raw_signal (python.test.TestRandomAccess) ... ok test_offset (python.test.TestRandomAccess) ... ok test_pylen_signal (python.test.TestRandomAccess) ... ok test_range (python.test.TestRandomAccess) ... ok test_read_group (python.test.TestRandomAccess) ... ok test_read_id (python.test.TestRandomAccess) ... ok test_sampling_rate (python.test.TestRandomAccess) ... ok test_signal (python.test.TestRandomAccess) ... ok test_seq_reads (python.test.TestSequentialRead) ... ok test_get_empty_header (python.test.TestWrite) ... ok test_get_empty_record (python.test.TestWrite) ... ok test_write_header (python.test.TestWrite) ... ok test_write_records (python.test.TestWrite) ... ok test_get_empty_aux (python.test.TestWriteAux) ... ok test_write_records_aux (python.test.TestWriteAux) ... ok test_write_matches_read (python.test.TestWriteData) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example_write.slow5.idx'. ok test_base_reads (python.test.TestYieldRead) ... ok test_reads_with_no_exist (python.test.TestYieldRead) ... [slow5_idx_get::ERROR] Read ID 'null_read' was not found. At src/slow5_idx.c:441 ok test_seq_reads_multi (python.test.testMultiThreading) ... ok test_get_reads_multi (python.test.testMultiThreadingRandom) ... ok ---------------------------------------------------------------------- Ran 42 tests in 1.413s OK r0 r1 r2 r3 r4 r5 0a238451-b9ed-446d-a152-badd074006c4 0d624d4b-671f-40b8-9798-84f2ccc4d7fc r0 r1 r2 r3 r4 r5 0a238451-b9ed-446d-a152-badd074006c4 0d624d4b-671f-40b8-9798-84f2ccc4d7fc make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<>/libslow5lib-0.7.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so.0 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so -- Up-to-date: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so.0 -- Up-to-date: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5_static.a make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/<>' :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives mv debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5_static.a debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.a d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev include usr \ debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so Library package automatic movement utility --> libzstd-dev package exists. set -e install -d -m 755 debian/libslow5-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libslow5-0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.a debian/libslow5-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so debian/libslow5-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so.0 debian/libslow5-0/usr/lib/arm-linux-gnueabihf PKGDEV=libslow5-dev PKGSHL=libslow5-0 install -d -m 755 debian/libslow5-dev/usr mv include debian/libslow5-dev/usr dh_install dh_install -plibslow5-dev src/*.h usr/include/slow5/ dh_install -ppython3-slow5 build/lib.*-*/* usr/lib/python3/dist-packages/ make[1]: Leaving directory '/<>' debian/rules execute_after_dh_install make[1]: Entering directory '/<>' :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives dh_numpy3 make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake debian/rules override_dh_installexamples make[1]: Entering directory '/<>' :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives dh_installexamples dh_installexamples -ppython3-slow5 python/example.py dh_installexamples -ppython3-slow5 examples/*.slow5 make[1]: Leaving directory '/<>' dh_python3 -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake 9656e44b3025609f59714a1f52d3d4c3b2856671 debugedit: debian/python3-slow5/usr/lib/python3/dist-packages/pyslow5.cpython-311-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f21 c6ca9a03cacd3312dc0ebe89e8baee9a46c4b0b3 debugedit: debian/python3-slow5/usr/lib/python3/dist-packages/pyslow5.cpython-310-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f21 547def18e8c433ff32ee6ba01f4f5285ec9ac6e9 dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateInit2_ used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflate used by debian/libslow5-0/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: Depends field of package libslow5-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-0: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-0: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libslow5-0 (in debian/libslow5-0); do_strip: , oemstrip: pkgstriptranslations: processing libslow5-dev (in debian/libslow5-dev); do_strip: , oemstrip: pkgstriptranslations: processing python3-slow5-dbgsym (in debian/.debhelper/python3-slow5/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libslow5-dev/DEBIAN/control, package libslow5-dev, directory debian/libslow5-dev INFO: pkgstripfiles: waiting for lock (libslow5-dev) ... pkgstripfiles: processing control file: debian/.debhelper/python3-slow5/dbgsym-root/DEBIAN/control, package python3-slow5-dbgsym, directory debian/.debhelper/python3-slow5/dbgsym-root dpkg-deb: building package 'python3-slow5-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-slow5/python3-slow5-dbgsym_0.7.0+dfsg-1_armhf.deb'. INFO: pkgstripfiles: waiting for lock (libslow5-dev) ... Renaming python3-slow5-dbgsym_0.7.0+dfsg-1_armhf.deb to python3-slow5-dbgsym_0.7.0+dfsg-1_armhf.ddeb INFO: pkgstripfiles: waiting for lock (libslow5-dev) ... INFO: pkgstripfiles: waiting for lock (libslow5-dev) ... INFO: pkgstripfiles: waiting for lock (libslow5-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libslow5-0/DEBIAN/control, package libslow5-0, directory debian/libslow5-0 INFO: pkgstripfiles: waiting for lock (libslow5-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libslow5-0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libslow5-0' in '../libslow5-0_0.7.0+dfsg-1_armhf.deb'. Searching for duplicated docs in dependency libslow5-0... symlinking changelog.Debian.gz in libslow5-dev to file in libslow5-0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libslow5-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_0.7.0+dfsg-1_armhf.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libslow5-0-dbgsym (in debian/.debhelper/libslow5-0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libslow5-0/dbgsym-root/DEBIAN/control, package libslow5-0-dbgsym, directory debian/.debhelper/libslow5-0/dbgsym-root dpkg-deb: building package 'libslow5-0-dbgsym' in 'debian/.debhelper/scratch-space/build-libslow5-0/libslow5-0-dbgsym_0.7.0+dfsg-1_armhf.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-slow5 (in debian/python3-slow5); do_strip: , oemstrip: Renaming libslow5-0-dbgsym_0.7.0+dfsg-1_armhf.deb to libslow5-0-dbgsym_0.7.0+dfsg-1_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-slow5/DEBIAN/control, package python3-slow5, directory debian/python3-slow5 Searching for duplicated docs in dependency libslow5-0... symlinking changelog.Debian.gz in python3-slow5 to file in libslow5-0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-slow5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-slow5' in '../python3-slow5_0.7.0+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=any -O../libslow5lib_0.7.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libslow5lib_0.7.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-06T08:33:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libslow5lib_0.7.0+dfsg-1_armhf.changes: --------------------------------------- Format: 1.8 Date: Thu, 13 Oct 2022 08:18:19 +0200 Source: libslow5lib Binary: libslow5-0 libslow5-dev python3-slow5 Built-For-Profiles: noudeb Architecture: armhf Version: 0.7.0+dfsg-1 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libslow5-0 - library for reading & writing SLOW5 files libslow5-dev - header and static library for reading & writing SLOW5 files python3-slow5 - Python3 modul for reading & writing SLOW5 files Changes: libslow5lib (0.7.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reflect symbol change in symbols file - crossing fingers that the only dependency does not use the only renamed symbol and thus do not bump SONAME Checksums-Sha1: 8ffa9c876b8b78e81f7099088f2c07ea0f8aa0fd 161858 libslow5-0-dbgsym_0.7.0+dfsg-1_armhf.ddeb d1e7d952501cd233f0753fdeed88de63acfd02c0 62816 libslow5-0_0.7.0+dfsg-1_armhf.deb b09077e3a9466aa5fdcb8a330a502cc20621e609 85162 libslow5-dev_0.7.0+dfsg-1_armhf.deb 51dc5eb444686ce5b924e14041cc7055f5ea9451 9168 libslow5lib_0.7.0+dfsg-1_armhf.buildinfo 734c8de71b1e82f1b2fe32c6a86ce18d4fe13770 2325912 python3-slow5-dbgsym_0.7.0+dfsg-1_armhf.ddeb ec10062d9a5482e60bd6a0eb58f645cf7500e2e5 594368 python3-slow5_0.7.0+dfsg-1_armhf.deb Checksums-Sha256: cc84b6d691dde63210faf7377c1f99e6d15be761f97f8f840719b24eb64c4641 161858 libslow5-0-dbgsym_0.7.0+dfsg-1_armhf.ddeb 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python3-slow5-dbgsym_0.7.0+dfsg-1_armhf.ddeb b9b52cd6f49a10846ff6d56a4712ad02 594368 python optional python3-slow5_0.7.0+dfsg-1_armhf.deb /<>/libslow5lib_0.7.0+dfsg-1_armhf.changes.new could not be renamed to /<>/libslow5lib_0.7.0+dfsg-1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libslow5lib Binary: libslow5-0 libslow5-0-dbgsym libslow5-dev python3-slow5 python3-slow5-dbgsym Architecture: armhf Version: 0.7.0+dfsg-1 Checksums-Md5: 7c04491c3b98c6e6842dd19490f615b5 161858 libslow5-0-dbgsym_0.7.0+dfsg-1_armhf.ddeb 0b4fadebbef879c53b1fa12c3d759477 62816 libslow5-0_0.7.0+dfsg-1_armhf.deb 9678407e1b0bd69d30704f27ab1986ad 85162 libslow5-dev_0.7.0+dfsg-1_armhf.deb 796dadb73ee28db0e09d7b50294c57d6 2325912 python3-slow5-dbgsym_0.7.0+dfsg-1_armhf.ddeb b9b52cd6f49a10846ff6d56a4712ad02 594368 python3-slow5_0.7.0+dfsg-1_armhf.deb Checksums-Sha1: 8ffa9c876b8b78e81f7099088f2c07ea0f8aa0fd 161858 libslow5-0-dbgsym_0.7.0+dfsg-1_armhf.ddeb d1e7d952501cd233f0753fdeed88de63acfd02c0 62816 libslow5-0_0.7.0+dfsg-1_armhf.deb b09077e3a9466aa5fdcb8a330a502cc20621e609 85162 libslow5-dev_0.7.0+dfsg-1_armhf.deb 734c8de71b1e82f1b2fe32c6a86ce18d4fe13770 2325912 python3-slow5-dbgsym_0.7.0+dfsg-1_armhf.ddeb ec10062d9a5482e60bd6a0eb58f645cf7500e2e5 594368 python3-slow5_0.7.0+dfsg-1_armhf.deb Checksums-Sha256: cc84b6d691dde63210faf7377c1f99e6d15be761f97f8f840719b24eb64c4641 161858 libslow5-0-dbgsym_0.7.0+dfsg-1_armhf.ddeb 7c3885e7bb580f443f88c15ac6c185a20180ecf9643f0d461c373d26b202d706 62816 libslow5-0_0.7.0+dfsg-1_armhf.deb 3f2e644f3efb705d6d60bbe7144c68d775b91d1961fc74c8f8c00a1b19ff7eae 85162 libslow5-dev_0.7.0+dfsg-1_armhf.deb f7a1c2876de58f72abc1f60934b2f9b9a5a01b466cf6fab895f357a8e5f6ed9f 2325912 python3-slow5-dbgsym_0.7.0+dfsg-1_armhf.ddeb a50e0a25f321f7e269f9438600e5a11aa9dfcc77f806937b9dddb122f4040433 594368 python3-slow5_0.7.0+dfsg-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Sun, 06 Nov 2022 08:33:36 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), apt (= 2.5.4), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39-8ubuntu2), binutils-arm-linux-gnueabihf (= 2.39-8ubuntu2), binutils-common (= 2.39-8ubuntu2), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), cmake (= 3.24.3-1ubuntu1), cmake-data (= 3.24.3-1ubuntu1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-9ubuntu1), cython3 (= 0.29.30-1ubuntu2), d-shlibs (= 0.104), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.9ubuntu1), dh-python (= 5.20221008), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14+20220924-2), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-9ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-9ubuntu1), gcc-12-base (= 12.2.0-9ubuntu1), gettext (= 0.21-8), gettext-base (= 0.21-8), gpgv (= 2.2.40-1ubuntu1), grep (= 3.8-3), groff-base (= 1.22.4-8build1), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-1), libapt-pkg6.0 (= 2.5.4), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1ubuntu1), libasan8 (= 12.2.0-9ubuntu1), libatomic1 (= 12.2.0-9ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39-8ubuntu2), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-9ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.30-1), libcrypt1 (= 1:4.4.30-1), libctf-nobfd0 (= 2.39-8ubuntu2), libctf0 (= 2.39-8ubuntu2), libcurl4 (= 7.86.0-1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-4), libelf1 (= 0.187-4), libexpat1 (= 2.5.0-1), libexpat1-dev (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-12-dev (= 12.2.0-9ubuntu1), libgcc-s1 (= 12.2.0-9ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 12.2.0-9ubuntu1), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-9ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20-1), libhogweed6 (= 3.8.1-2), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libisl23 (= 0.25-1), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-sphinxdoc (= 4.5.0-4), libjs-underscore (= 1.13.4~dfsg+~1.11.4-2), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblapack3 (= 3.10.1-2), libldap-2.5-0 (= 2.5.13+dfsg-1ubuntu2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.7-0.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1ubuntu2), libpam-modules (= 1.5.2-2ubuntu1), libpam-modules-bin (= 1.5.2-2ubuntu1), libpam-runtime (= 1.5.2-2ubuntu1), libpam0g (= 1.5.2-2ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libperl5.36 (= 5.36.0-4ubuntu2), libpipeline1 (= 1.5.6-3), libprocps8 (= 2:3.3.17-7ubuntu1), libpsl5 (= 0.21.0-1.2build2), libpython3-all-dev (= 3.10.6-1ubuntu1), libpython3-dev (= 3.10.6-1ubuntu1), libpython3-stdlib (= 3.10.6-1ubuntu1), libpython3.10 (= 3.10.8-1), libpython3.10-dev (= 3.10.8-1), libpython3.10-minimal (= 3.10.8-1), libpython3.10-stdlib (= 3.10.8-1), libpython3.11 (= 3.11.0-1), libpython3.11-dev (= 3.11.0-1), libpython3.11-minimal (= 3.11.0-1), libpython3.11-stdlib (= 3.11.0-1), libreadline8 (= 8.2-1.1), librhash0 (= 1.4.2-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu2), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsemanage-common (= 3.4-1build1), libsemanage2 (= 3.4-1build1), libsepol2 (= 3.4-2), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.39.4-1), libssh-4 (= 0.10.4-2), libssl3 (= 3.0.5-2ubuntu1), libstdc++-12-dev (= 12.2.0-9ubuntu1), libstdc++6 (= 12.2.0-9ubuntu1), libstreamvbyte-dev (= 0.4.1-4), libstreamvbyte0 (= 0.4.1-4), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.4-1ubuntu7), libtasn1-6 (= 4.19.0-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libubsan1 (= 12.2.0-9ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-2), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.1), libxxhash0 (= 0.8.1-1), libzstd-dev (= 1.5.2+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 35), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.0-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-4ubuntu2), perl-base (= 5.36.0-4ubuntu2), perl-modules-5.36 (= 5.36.0-4ubuntu2), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7ubuntu1), python3 (= 3.10.6-1ubuntu1), python3-all (= 3.10.6-1ubuntu1), python3-all-dev (= 3.10.6-1ubuntu1), python3-dev (= 3.10.6-1ubuntu1), python3-distutils (= 3.10.8-1), python3-lib2to3 (= 3.10.8-1), python3-minimal (= 3.10.6-1ubuntu1), python3-numpy (= 1:1.21.5-1ubuntu1), python3-pkg-resources (= 59.6.0-1.2), python3-setuptools (= 59.6.0-1.2), python3-wheel (= 0.38.0-1), python3.10 (= 3.10.8-1), python3.10-dev (= 3.10.8-1), python3.10-minimal (= 3.10.8-1), python3.11 (= 3.11.0-1), python3.11-dev (= 3.11.0-1), python3.11-minimal (= 3.11.0-1), readline-common (= 8.2-1.1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.31), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1build3), ubuntu-keyring (= 2021.03.26), usrmerge (= 29ubuntu2), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.7-0.1), zlib1g (= 1:1.2.11.dfsg-4.1ubuntu2), zlib1g-dev (= 1:1.2.11.dfsg-4.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1665641899" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libslow5-0_0.7.0+dfsg-1_armhf.deb --------------------------------- new Debian package, version 2.0. size 62816 bytes: control archive=2058 bytes. 1539 bytes, 30 lines control 224 bytes, 3 lines md5sums 38 bytes, 1 lines shlibs 4846 bytes, 155 lines symbols 75 bytes, 2 lines triggers Package: libslow5-0 Source: libslow5lib Version: 0.7.0+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 149 Depends: libc6 (>= 2.33), libzstd1 (>= 1.5.2) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/hasindu2008/slow5lib Description: library for reading & writing SLOW5 files Slow5lib is a software library for reading & writing SLOW5 files. Slow5lib is designed to facilitate use of data in SLOW5 format by third- party software packages. Existing packages that read/write data in FAST5 format can be easily modified to support SLOW5. . SLOW5 is a new file format for storing signal data from Oxford Nanopore Technologies (ONT) devices. SLOW5 was developed to overcome inherent limitations in the standard FAST5 signal data format that prevent efficient, scalable analysis and cause many headaches for developers. SLOW5 can be encoded in human-readable ASCII format, or a more compact and efficient binary format (BLOW5) - this is analogous to the seminal SAM/BAM format for storing DNA sequence alignments. The BLOW5 binary format supports *zlib* (DEFLATE) compression, or other compression methods, thereby minimising the data storage footprint while still permitting efficient parallel access. Detailed benchmarking experiments have shown that SLOW5 format is an order of magnitude faster and significantly smaller than FAST5. drwxr-xr-x root/root 0 2022-10-13 06:18 ./ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 132464 2022-10-13 06:18 ./usr/lib/arm-linux-gnueabihf/libslow5.so.0 drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/doc/libslow5-0/ -rw-r--r-- root/root 551 2022-10-13 06:18 ./usr/share/doc/libslow5-0/changelog.Debian.gz -rw-r--r-- root/root 2089 2022-10-13 06:18 ./usr/share/doc/libslow5-0/copyright libslow5-dev_0.7.0+dfsg-1_armhf.deb ----------------------------------- new Debian package, version 2.0. size 85162 bytes: control archive=1378 bytes. 1629 bytes, 32 lines control 725 bytes, 11 lines md5sums Package: libslow5-dev Source: libslow5lib Version: 0.7.0+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 290 Depends: libslow5-0 (= 0.7.0+dfsg-1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/hasindu2008/slow5lib Description: header and static library for reading & writing SLOW5 files Slow5lib is a software library for reading & writing SLOW5 files. Slow5lib is designed to facilitate use of data in SLOW5 format by third- party software packages. Existing packages that read/write data in FAST5 format can be easily modified to support SLOW5. . SLOW5 is a new file format for storing signal data from Oxford Nanopore Technologies (ONT) devices. SLOW5 was developed to overcome inherent limitations in the standard FAST5 signal data format that prevent efficient, scalable analysis and cause many headaches for developers. SLOW5 can be encoded in human-readable ASCII format, or a more compact and efficient binary format (BLOW5) - this is analogous to the seminal SAM/BAM format for storing DNA sequence alignments. The BLOW5 binary format supports *zlib* (DEFLATE) compression, or other compression methods, thereby minimising the data storage footprint while still permitting efficient parallel access. Detailed benchmarking experiments have shown that SLOW5 format is an order of magnitude faster and significantly smaller than FAST5. . This is the development package containing headers and static library. drwxr-xr-x root/root 0 2022-10-13 06:18 ./ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/ drwxr-xr-x root/root 0 2022-10-07 23:23 ./usr/include/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/include/slow5/ drwxr-xr-x root/root 0 2022-10-07 23:23 ./usr/include/slow5/klib/ -rw-r--r-- root/root 21540 2022-10-07 23:23 ./usr/include/slow5/klib/khash.h -rw-r--r-- root/root 2880 2022-10-07 23:23 ./usr/include/slow5/klib/kvec.h -rw-r--r-- root/root 31763 2022-10-07 23:23 ./usr/include/slow5/slow5.h -rw-r--r-- root/root 7346 2022-10-07 23:23 ./usr/include/slow5/slow5_defs.h -rw-r--r-- root/root 5357 2022-10-07 23:23 ./usr/include/slow5/slow5_error.h -rw-r--r-- root/root 6306 2022-10-07 23:23 ./usr/include/slow5/slow5_extra.h -rw-r--r-- root/root 2069 2022-10-07 23:23 ./usr/include/slow5/slow5_idx.h -rw-r--r-- root/root 4215 2022-10-07 23:23 ./usr/include/slow5/slow5_misc.h -rw-r--r-- root/root 6604 2022-10-07 23:23 ./usr/include/slow5/slow5_press.h drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 184912 2022-10-13 06:18 ./usr/lib/arm-linux-gnueabihf/libslow5.a lrwxrwxrwx root/root 0 2022-10-13 06:18 ./usr/lib/arm-linux-gnueabihf/libslow5.so -> libslow5.so.0 drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/doc/libslow5-dev/ lrwxrwxrwx root/root 0 2022-10-13 06:18 ./usr/share/doc/libslow5-dev/changelog.Debian.gz -> ../libslow5-0/changelog.Debian.gz -rw-r--r-- root/root 2089 2022-10-13 06:18 ./usr/share/doc/libslow5-dev/copyright python3-slow5_0.7.0+dfsg-1_armhf.deb ------------------------------------ new Debian package, version 2.0. size 594368 bytes: control archive=1366 bytes. 1711 bytes, 31 lines control 725 bytes, 8 lines md5sums Package: python3-slow5 Source: libslow5lib Version: 0.7.0+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 7637 Depends: libslow5-0 (= 0.7.0+dfsg-1), libc6 (>= 2.34), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3 (<< 3.12), python3 (>= 3.10~) Section: python Priority: optional Homepage: https://github.com/hasindu2008/slow5lib Description: Python3 modul for reading & writing SLOW5 files Slow5lib is a software library for reading & writing SLOW5 files. Slow5lib is designed to facilitate use of data in SLOW5 format by third- party software packages. Existing packages that read/write data in FAST5 format can be easily modified to support SLOW5. . SLOW5 is a new file format for storing signal data from Oxford Nanopore Technologies (ONT) devices. SLOW5 was developed to overcome inherent limitations in the standard FAST5 signal data format that prevent efficient, scalable analysis and cause many headaches for developers. SLOW5 can be encoded in human-readable ASCII format, or a more compact and efficient binary format (BLOW5) - this is analogous to the seminal SAM/BAM format for storing DNA sequence alignments. The BLOW5 binary format supports *zlib* (DEFLATE) compression, or other compression methods, thereby minimising the data storage footprint while still permitting efficient parallel access. Detailed benchmarking experiments have shown that SLOW5 format is an order of magnitude faster and significantly smaller than FAST5. . This is the Python3 module. drwxr-xr-x root/root 0 2022-10-13 06:18 ./ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/lib/python3/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/lib/python3/dist-packages/ -rw-r--r-- root/root 540532 2022-10-13 06:18 ./usr/lib/python3/dist-packages/pyslow5.cpython-310-arm-linux-gnueabihf.so -rw-r--r-- root/root 540532 2022-10-13 06:18 ./usr/lib/python3/dist-packages/pyslow5.cpython-311-arm-linux-gnueabihf.so drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/doc/python3-slow5/ lrwxrwxrwx root/root 0 2022-10-13 06:18 ./usr/share/doc/python3-slow5/changelog.Debian.gz -> ../libslow5-0/changelog.Debian.gz -rw-r--r-- root/root 2089 2022-10-13 06:18 ./usr/share/doc/python3-slow5/copyright drwxr-xr-x root/root 0 2022-10-13 06:18 ./usr/share/doc/python3-slow5/examples/ -rw-r--r-- root/root 19051 2022-10-07 23:23 ./usr/share/doc/python3-slow5/examples/example.py -rw-r--r-- root/root 1194881 2022-10-07 23:23 ./usr/share/doc/python3-slow5/examples/example.slow5 -rw-r--r-- root/root 1838054 2022-10-07 23:23 ./usr/share/doc/python3-slow5/examples/example2.slow5 -rw-r--r-- root/root 1835494 2022-10-13 06:18 ./usr/share/doc/python3-slow5/examples/example_write.slow5 -rw-r--r-- root/root 1835842 2022-10-13 06:18 ./usr/share/doc/python3-slow5/examples/example_write_aux.slow5 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 70628 Build-Time: 262 Distribution: lunar-proposed Host Architecture: armhf Install-Time: 81 Job: libslow5lib_0.7.0+dfsg-1.dsc Machine Architecture: arm64 Package: libslow5lib Package-Time: 346 Source-Version: 0.7.0+dfsg-1 Space: 70628 Status: successful Version: 0.7.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2022-11-06T08:33:37Z Build needed 00:05:46, 70628k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24612766 Scanning for processes to kill in build PACKAGEBUILD-24612766