RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-036 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 Dec 23:08:33 ntpdate[1803]: adjust time server 10.211.37.1 offset 0.000106 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13829477 /home/buildd/filecache-default/b6762bcd0bec7d108ffb0fb3fb0b7d1ce32df8bb Creating target for build PACKAGEBUILD-13829477 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13829477 Starting target for build PACKAGEBUILD-13829477 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13829477 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13829477 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13829477 Updating target for build PACKAGEBUILD-13829477 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main i386 Packages [1005 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [518 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe i386 Packages [8304 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4897 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 Packages [56.8 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [26.0 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe i386 Packages [175 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [97.4 kB] Fetched 15.5 MB in 4s (3208 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libidn2-0 libip4tc0 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmount1 libmpx2 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 101 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 62.6 MB of archives. After this operation, 1056 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main i386 base-files i386 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main i386 bsdutils i386 1:2.30.2-0.1ubuntu1 [62.5 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main i386 coreutils i386 8.26-3ubuntu4 [1283 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main i386 debianutils i386 4.8.3 [86.3 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main i386 dpkg i386 1.19.0.4ubuntu1 [1166 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main i386 libc6-dev i386 2.26-0ubuntu2 [2144 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main i386 libc-dev-bin i386 2.26-0ubuntu2 [67.0 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 linux-libc-dev i386 4.14.0-11.13 [960 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main i386 libquadmath0 i386 7.2.0-17ubuntu1 [205 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main i386 libitm1 i386 7.2.0-17ubuntu1 [30.3 kB] Get:11 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http://ftpmaster.internal/ubuntu bionic/main i386 g++-7 i386 7.2.0-17ubuntu1 [7800 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main i386 gcc-7 i386 7.2.0-17ubuntu1 [7664 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main i386 libgcc-7-dev i386 7.2.0-17ubuntu1 [2399 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main i386 libstdc++-7-dev i386 7.2.0-17ubuntu1 [1498 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main i386 libstdc++6 i386 7.2.0-17ubuntu1 [429 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libgmp10 i386 2:6.1.2+dfsg-1.1 [246 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main i386 libbinutils i386 2.29.1-10ubuntu1 [551 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main i386 binutils i386 2.29.1-10ubuntu1 [3412 B] Get:29 http://ftpmaster.internal/ubuntu bionic/main i386 binutils-common i386 2.29.1-10ubuntu1 [190 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main i386 binutils-i686-linux-gnu i386 2.29.1-10ubuntu1 [1998 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libsmartcols1 i386 2.30.2-0.1ubuntu1 [85.6 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main i386 libfdisk1 i386 2.30.2-0.1ubuntu1 [173 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main i386 libpcre3 i386 2:8.39-8 [228 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main i386 libselinux1 i386 2.7-2 [73.0 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main i386 libmount1 i386 2.30.2-0.1ubuntu1 [143 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main i386 fdisk i386 2.30.2-0.1ubuntu1 [115 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main i386 util-linux i386 2.30.2-0.1ubuntu1 [905 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main i386 base-passwd i386 3.5.44 [47.8 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main i386 libc-bin i386 2.26-0ubuntu2 [569 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main i386 sysvinit-utils i386 2.88dsf-59.10ubuntu1 [19.3 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main i386 libudev1 i386 235-3ubuntu2 [58.2 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main i386 libapt-pkg5.0 i386 1.6~alpha5 [847 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main i386 debconf all 1.5.65 [124 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 adduser all 3.116ubuntu1 [163 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main i386 libgpg-error0 i386 1.27-5 [40.2 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main i386 libgcrypt20 i386 1.8.1-4 [398 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main i386 gpgv i386 2.1.15-1ubuntu8 [206 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main i386 libseccomp2 i386 2.3.1-2.1ubuntu3 [35.4 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main i386 apt i386 1.6~alpha5 [1169 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main i386 libapparmor1 i386 2.11.0-2ubuntu18 [30.3 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main i386 libcap2 i386 1:2.25-1.2 [13.4 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main i386 libip4tc0 i386 1.6.1-2ubuntu2 [20.4 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main i386 mount i386 2.30.2-0.1ubuntu1 [115 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main i386 systemd i386 235-3ubuntu2 [2926 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main i386 libsystemd0 i386 235-3ubuntu2 [213 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main i386 systemd-sysv i386 235-3ubuntu2 [13.1 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main i386 libcap-ng0 i386 0.7.7-3.1 [11.2 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main i386 libcomerr2 i386 1.43.7-1 [11.7 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main i386 libsemanage-common all 2.7-2 [6916 B] Get:70 http://ftpmaster.internal/ubuntu bionic/main i386 libsemanage1 i386 2.7-2 [93.4 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main i386 libss2 i386 1.43.7-1 [11.6 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main i386 libnettle6 i386 3.3-2 [109 kB] Get:73 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libsqlite3-0 i386 3.21.0-1 [526 kB] Get:84 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libssl1.0.0 i386 1.0.2g-1ubuntu15 [907 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main i386 multiarch-support i386 2.26-0ubuntu2 [6830 B] Get:86 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 openssl i386 1.0.2g-1ubuntu15 [507 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main i386 tzdata all 2017c-1 [188 kB] Get:88 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libgssapi-krb5-2 i386 1.15.2-2 [130 kB] Get:89 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libkrb5-3 i386 1.15.2-2 [301 kB] Get:90 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libkrb5support0 i386 1.15.2-2 [33.1 kB] Get:91 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libk5crypto3 i386 1.15.2-2 [89.5 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main i386 libkeyutils1 i386 1.5.9-9.2ubuntu1 [9544 B] Get:93 http://ftpmaster.internal/ubuntu bionic/main i386 libidn2-0 i386 2.0.4-1 [94.8 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main i386 libpng16-16 i386 1.6.34-1 [183 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/universe i386 apt-transport-https all 1.6~alpha5 [1692 B] Get:96 http://ftpmaster.internal/ubuntu bionic/main i386 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main i386 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main i386 build-essential i386 12.4ubuntu1 [4752 B] Get:99 http://ftpmaster.internal/ubuntu bionic/main i386 libpsl5 i386 0.19.1-4 [41.9 kB] Get:100 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libcurl3-gnutls i386 7.55.1-1ubuntu3 [214 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main i386 optipng i386 0.7.6-1ubuntu1 [87.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.6 MB in 4s (13.2 MB/s) (Reading database ... 12671 files and directories 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Preparing to unpack .../base-files_10ubuntu1_i386.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12671 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.30.2-0.1ubuntu1_i386.deb ... Unpacking bsdutils (1:2.30.2-0.1ubuntu1) over (1:2.30.1-0ubuntu4) ... Setting up bsdutils (1:2.30.2-0.1ubuntu1) ... (Reading database ... 12671 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_i386.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12671 files and directories currently installed.) 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Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Setting up libcurl3-gnutls:i386 (7.55.1-1ubuntu3) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13829477 i386 bionic-proposed -c chroot:build-PACKAGEBUILD-13829477 --arch=i386 --dist=bionic-proposed --nolog logol_1.7.6-1.dsc Initiating build PACKAGEBUILD-13829477 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-036.buildd +==============================================================================+ | logol 1.7.6-1 (i386) 07 Dec 2017 23:09 | +==============================================================================+ Package: logol Version: 1.7.6-1 Source Version: 1.7.6-1 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/logol-9XYwoj/logol-1.7.6' with '<>' I: NOTICE: Log filtering will replace 'build/logol-9XYwoj' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13829477/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- logol_1.7.6-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-RWLknX/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-RWLknX/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RWLknX/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-RWLknX/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RWLknX/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-RWLknX/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (101 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-RWLknX/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. 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Merged Build-Depends: debhelper (>= 10), default-jdk, ant, ruby, gawk, swi-prolog (>= 6.4.1-3), libbiojava-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, libncursesw5-dev, ant-optional, cassiopee, ruby-cassiopee Filtered Build-Depends: debhelper (>= 10), default-jdk, ant, ruby, gawk, swi-prolog (>= 6.4.1-3), libbiojava-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, libncursesw5-dev, ant-optional, cassiopee, ruby-cassiopee dpkg-deb: building package 'sbuild-build-depends-logol-dummy' in '/<>/resolver-Up_sJj/apt_archive/sbuild-build-depends-logol-dummy.deb'. Ign:1 copy:/<>/resolver-Up_sJj/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Up_sJj/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Up_sJj/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Up_sJj/apt_archive ./ Sources [377 B] Get:5 copy:/<>/resolver-Up_sJj/apt_archive ./ Packages [702 B] Fetched 3198 B in 0s (99.3 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install logol build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libkrb5-26-heimdal libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme ant ant-optional antlr3 autoconf automake autopoint autotools-dev bsdmainutils ca-certificates-java cassiopee debhelper default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gawk gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian java-common junit4 libantlr3-runtime-java libapache-pom-java libarchive-zip-perl libarchive13 libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.7-java libboost-serialization1.65.1 libbsd-dev libbsd0 libbytecode-java libcairo2 libcassie1v5 libcommons-cli-java libcommons-collections3-java libcommons-configuration-java libcommons-dbcp-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcommons-pool-java libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit-dev libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libflac8 libfontconfig1 libfontenc1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgflags2.2 libgif7 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgmp-dev libgmpxx4ldbl libgoogle-glog0v5 libgraphite2-3 libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhsqldb-java libice6 libicu60 libijs-0.35 libjaxp1.3-java libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libkpathsea6 liblcms2-2 libllvm5.0 liblog4j1.2-java liblzo2-2 libmagic-mgc libmagic1 libmail-java libncurses5-dev libncursesw5-dev libnspr4 libnss3 libogg0 libossp-uuid16 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libpipeline1 libpixman-1-0 libpoppler68 libpotrace0 libptexenc1 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev librsvg2-2 librsvg2-common libruby2.3 libsensors4 libservlet3.1-java libsigsegv2 libsm6 libsndfile1 libstringtemplate4-java libsynctex1 libtexlua52 libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtool libunwind8 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-xcb1 libxalan2-java libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libzzip-0-13 m4 man-db mime-support openjdk-8-jdk openjdk-8-jdk-headless openjdk-8-jre openjdk-8-jre-headless po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal rake ruby ruby-cassiopee ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-text ruby2.3 rubygems-integration shared-mime-info swi-prolog swi-prolog-nox swi-prolog-x t1utils tex-common texlive texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ubuntu-mono ucf x11-common x11-utils xdg-utils Suggested packages: ant-doc ant-gcj ant-optional-gcj antlr javacc junit jython libbcel-java libbsf-java libcommons-net-java libjdepend-java libjsch-java liboro-java libregexp-java autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz default-java-plugin gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libasound2-plugins alsa-utils java-virtual-machine libjgrapht-java libbiojava-java-doc libcommons-collections3-java-doc libcommons-beanutils-java libcommons-codec-java libcommons-digester-java libcommons-jexl2-java libcommons-jxpath-java libcommons-vfs-java libcommons-dbcp-java-doc libgeronimo-jta-1.1-spec-java libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common gmp-doc libgmp10-doc libmpfr-dev gvfs libhsqldb-java-doc liblcms2-utils liblog4j1.2-java-doc libmail-java-doc ncurses-doc uuid pciutils pcscd pulseaudio readline-doc librsvg2-bin lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk libxalan2-java-doc libxsltc-java libxerces2-java-doc libxml-commons-resolver1.1-java-doc m4-doc less www-browser apparmor openjdk-8-demo openjdk-8-source visualvm icedtea-8-plugin libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc binfmt-support ri ruby-dev bundler elpa-ediprolog gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer python-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby mesa-utils libglib2.0-bin Recommended packages: libstringtemplate-java curl | wget | lynx-cur at-spi2-core libcupsfilters1 dbus libarchive-cpio-perl libgdk-pixbuf2.0-bin libtxc-dxtn-s2tc | libtxc-dxtn-s2tc0 | libtxc-dxtn0 libglib2.0-data xdg-user-dirs fonts-droid-fallback libgail-common libgtk2.0-bin javascript-common libltdl-dev libxt-dev fonts-dejavu-extra libmail-sendmail-perl zip fonts-lato lmodern wish tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pictures-doc tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-xserver-utils The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: adwaita-icon-theme ant ant-optional antlr3 autoconf automake autopoint autotools-dev bsdmainutils ca-certificates-java cassiopee debhelper default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gawk gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian java-common junit4 libantlr3-runtime-java libapache-pom-java libarchive-zip-perl libarchive13 libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.7-java libboost-serialization1.65.1 libbsd-dev libbsd0 libbytecode-java libcairo2 libcassie1v5 libcommons-cli-java libcommons-collections3-java libcommons-configuration-java libcommons-dbcp-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcommons-pool-java libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit-dev libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libflac8 libfontconfig1 libfontenc1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgflags2.2 libgif7 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgmp-dev libgmpxx4ldbl libgoogle-glog0v5 libgraphite2-3 libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhsqldb-java libice6 libicu60 libijs-0.35 libjaxp1.3-java libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libkpathsea6 liblcms2-2 libllvm5.0 liblog4j1.2-java liblzo2-2 libmagic-mgc libmagic1 libmail-java libncurses5-dev libncursesw5-dev libnspr4 libnss3 libogg0 libossp-uuid16 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libpipeline1 libpixman-1-0 libpoppler68 libpotrace0 libptexenc1 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev librsvg2-2 librsvg2-common libruby2.3 libsensors4 libservlet3.1-java libsigsegv2 libsm6 libsndfile1 libstringtemplate4-java libsynctex1 libtexlua52 libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtool libunwind8 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-xcb1 libxalan2-java libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libzzip-0-13 m4 man-db mime-support openjdk-8-jdk openjdk-8-jdk-headless openjdk-8-jre openjdk-8-jre-headless po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal rake ruby ruby-cassiopee ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-text ruby2.3 rubygems-integration sbuild-build-depends-logol-dummy shared-mime-info swi-prolog swi-prolog-nox swi-prolog-x t1utils tex-common texlive texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ubuntu-mono ucf x11-common x11-utils xdg-utils 0 upgraded, 254 newly installed, 1 to remove and 0 not upgraded. Need to get 225 MB of archives. After this operation, 902 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Up_sJj/apt_archive ./ sbuild-build-depends-logol-dummy 0.invalid.0 [1032 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main i386 libxau6 i386 1:1.0.8-1 [8352 B] Get:3 http://ftpmaster.internal/ubuntu bionic/main i386 libbsd0 i386 0.8.6-3 [44.9 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main i386 libxdmcp6 i386 1:1.1.2-3 [11.1 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb1 i386 1.12-1ubuntu1 [49.6 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main i386 libx11-data all 2:1.6.4-3 [114 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main i386 libx11-6 i386 2:1.6.4-3 [594 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main i386 libxext6 i386 2:1.3.3-1 [31.6 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main i386 groff-base i386 1.22.3-9 [1163 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main i386 bsdmainutils i386 9.0.14ubuntu1 [181 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main i386 man-db i386 2.7.6.1-4 [907 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main i386 libexpat1 i386 2.2.5-0ubuntu2 [77.9 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main i386 libfreetype6 i386 2.8-0.2ubuntu2 [349 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main i386 ucf all 3.0036 [52.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main i386 fonts-dejavu-core all 2.37-1 [1041 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main i386 fontconfig-config all 2.12.6-0ubuntu1 [55.5 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main i386 libfontconfig1 i386 2.12.6-0ubuntu1 [146 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main i386 fontconfig i386 2.12.6-0ubuntu1 [169 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main i386 libsigsegv2 i386 2.11-1 [13.5 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main i386 gawk i386 1:4.1.4+dfsg-1 [409 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main i386 libjpeg-turbo8 i386 1.5.2-0ubuntu5 [118 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main i386 liblzo2-2 i386 2.08-1.2 [52.7 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main i386 libogg0 i386 1.3.2-1 [16.2 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main i386 x11-common all 1:7.7+19ubuntu3 [22.0 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main i386 libice6 i386 2:1.0.9-2 [42.6 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main i386 libsm6 i386 2:1.2.2-1 [14.8 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main i386 libxrender1 i386 1:0.9.10-1 [19.9 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main i386 libxft2 i386 2.3.2-1 [35.5 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main i386 libxinerama1 i386 2:1.1.3-1 [7900 B] Get:31 http://ftpmaster.internal/ubuntu bionic/main i386 libxshmfence1 i386 1.2-1 [5164 B] Get:32 http://ftpmaster.internal/ubuntu bionic/main i386 libxxf86dga1 i386 2:1.1.4-1 [13.3 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main i386 libxxf86vm1 i386 1:1.1.4-1 [11.3 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main i386 poppler-data all 0.4.8-2 [1479 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libpython2.7-minimal i386 2.7.14-4 [337 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 python2.7-minimal i386 2.7.14-4 [1322 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main i386 python-minimal i386 2.7.14-2ubuntu1 [28.1 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main i386 mime-support all 3.60ubuntu1 [30.1 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libpython2.7-stdlib i386 2.7.14-4 [1931 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 python2.7 i386 2.7.14-4 [233 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main i386 libpython-stdlib i386 2.7.14-2ubuntu1 [7576 B] Get:42 http://ftpmaster.internal/ubuntu bionic/main i386 python i386 2.7.14-2ubuntu1 [140 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main i386 tex-common all 6.09 [33.0 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main i386 libjbig0 i386 2.1-3.1 [27.0 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main i386 libmagic-mgc i386 1:5.32-1 [184 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main i386 libmagic1 i386 1:5.32-1 [75.0 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main i386 file i386 1:5.32-1 [21.9 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main i386 libdbus-1-3 i386 1.12.2-1ubuntu1 [188 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main i386 libelf1 i386 0.170-0.1 [50.9 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main i386 libglib2.0-0 i386 2.54.1-1ubuntu1 [1231 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main i386 libicu60 i386 60.1-1ubuntu2 [8185 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libxml2 i386 2.9.4+dfsg1-5.1ubuntu1 [703 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main i386 libyaml-0-2 i386 0.1.7-2ubuntu3 [49.3 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main i386 shared-mime-info i386 1.9-2 [427 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main i386 gettext-base i386 0.19.8.1-4ubuntu1 [50.7 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main i386 libdrm-common all 2.4.88-1 [4780 B] Get:57 http://ftpmaster.internal/ubuntu bionic/main i386 libdrm2 i386 2.4.88-1 [33.0 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main i386 libedit2 i386 3.1-20170329-1 [80.4 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main i386 libxmuu1 i386 2:1.1.2-2 [9988 B] Get:60 http://ftpmaster.internal/ubuntu bionic/main i386 hicolor-icon-theme all 0.17-1 [10.3 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main i386 libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:62 http://ftpmaster.internal/ubuntu bionic/main i386 libtiff5 i386 4.0.8-6 [162 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main i386 libgdk-pixbuf2.0-common all 2.36.11-1 [4260 B] Get:64 http://ftpmaster.internal/ubuntu bionic/main i386 libgdk-pixbuf2.0-0 i386 2.36.11-1 [177 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main i386 gtk-update-icon-cache i386 3.22.26-2ubuntu1 [28.2 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main i386 libpixman-1-0 i386 0.34.0-1 [235 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb-render0 i386 1.12-1ubuntu1 [15.9 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb-shm0 i386 1.12-1ubuntu1 [5624 B] Get:69 http://ftpmaster.internal/ubuntu bionic/main i386 libcairo2 i386 1.15.8-2 [630 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main i386 libcroco3 i386 0.6.12-1 [87.5 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main i386 libthai-data all 0.1.27-1 [133 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main i386 libdatrie1 i386 0.2.10-5 [19.2 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main i386 libthai0 i386 0.1.27-1 [19.0 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main i386 libpango-1.0-0 i386 1.40.13-2 [159 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main i386 libgraphite2-3 i386 1.3.10-6 [80.6 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main i386 libharfbuzz0b i386 1.7.2-1 [240 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main i386 libpangoft2-1.0-0 i386 1.40.13-2 [36.1 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main i386 libpangocairo-1.0-0 i386 1.40.13-2 [22.6 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main i386 librsvg2-2 i386 2.40.18-2 [107 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main i386 librsvg2-common i386 2.40.18-2 [5232 B] Get:81 http://ftpmaster.internal/ubuntu bionic/main i386 humanity-icon-theme all 0.6.13 [1288 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main i386 ubuntu-mono all 16.10+18.04.20171115.1-0ubuntu1 [151 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main i386 adwaita-icon-theme all 3.26.1-1ubuntu1 [3447 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main i386 libnspr4 i386 2:4.16-1ubuntu2 [121 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main i386 libnss3 i386 2:3.32-1ubuntu3 [1210 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main i386 ca-certificates-java all 20170930 [12.0 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main i386 java-common all 0.59ubuntu1 [7232 B] Get:88 http://ftpmaster.internal/ubuntu bionic/main i386 libavahi-common-data i386 0.6.32-1ubuntu1 [22.0 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main i386 libavahi-common3 i386 0.6.32-1ubuntu1 [23.5 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main i386 libavahi-client3 i386 0.6.32-1ubuntu1 [27.1 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main i386 libcups2 i386 2.2.6-2 [225 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main i386 liblcms2-2 i386 2.8-4 [150 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main i386 libpcsclite1 i386 1.8.22-1ubuntu1 [22.7 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main i386 libxi6 i386 2:1.7.9-1 [31.7 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main i386 libxtst6 i386 2:1.2.3-1 [13.4 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main i386 openjdk-8-jre-headless i386 8u151-b12-1 [26.9 MB] Get:97 http://ftpmaster.internal/ubuntu bionic/main i386 default-jre-headless i386 2:1.8-59ubuntu1 [3678 B] Get:98 http://ftpmaster.internal/ubuntu bionic-proposed/universe i386 ant all 1.9.9-5 [1913 kB] Get:99 http://ftpmaster.internal/ubuntu bionic-proposed/universe i386 ant-optional all 1.9.9-5 [338 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/universe i386 libantlr3-runtime-java all 3.5.2-8 [164 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/universe i386 libstringtemplate4-java all 4.0.8-2 [225 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/universe i386 antlr3 all 3.5.2-8 [1140 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main i386 m4 i386 1.4.18-1 [196 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main i386 autoconf all 2.69-11 [322 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main i386 autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main i386 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main i386 autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main i386 libboost-serialization1.65.1 i386 1.65.1+dfsg-0ubuntu4 [106 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/universe i386 libgflags2.2 i386 2.2.1-1 [77.0 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main i386 libunwind8 i386 1.1-4.1ubuntu2 [50.3 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/universe i386 libgoogle-glog0v5 i386 0.3.5-1 [53.8 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/universe i386 libcassie1v5 i386 1.0.5-2build1 [39.0 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/universe i386 cassiopee i386 1.0.5-2build1 [12.9 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main i386 libtool all 2.4.6-2 [194 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main i386 dh-autoreconf all 15 [15.8 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main i386 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:117 http://ftpmaster.internal/ubuntu bionic/main i386 libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:119 http://ftpmaster.internal/ubuntu bionic/main i386 dh-strip-nondeterminism all 0.040-1 [5196 B] Get:120 http://ftpmaster.internal/ubuntu bionic/main i386 gettext i386 0.19.8.1-4ubuntu1 [1097 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main i386 po-debconf all 1.0.20 [232 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main i386 debhelper all 10.10.9ubuntu1 [871 kB] Get:124 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libgtk2.0-common all 2.24.31-4ubuntu1 [124 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main i386 libatk1.0-data all 2.26.1-1 [2884 B] Get:126 http://ftpmaster.internal/ubuntu bionic/main i386 libatk1.0-0 i386 2.26.1-1 [44.0 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main i386 libxcomposite1 i386 1:0.4.4-2 [7184 B] Get:128 http://ftpmaster.internal/ubuntu bionic/main i386 libxfixes3 i386 1:5.0.3-1 [11.2 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main i386 libxcursor1 i386 1:1.1.14-3ubuntu1 [21.6 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main i386 libxdamage1 i386 1:1.1.4-3 [7090 B] Get:131 http://ftpmaster.internal/ubuntu bionic/main i386 libxrandr2 i386 2:1.5.1-1 [19.9 kB] Get:132 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libgtk2.0-0 i386 2.24.31-4ubuntu1 [1897 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main i386 libglapi-mesa i386 17.2.4-0ubuntu2 [22.9 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main i386 libx11-xcb1 i386 2:1.6.4-3 [9596 B] Get:135 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb-dri2-0 i386 1.12-1ubuntu1 [7222 B] Get:136 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb-dri3-0 i386 1.12-1ubuntu1 [5288 B] Get:137 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb-glx0 i386 1.12-1ubuntu1 [23.9 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb-present0 i386 1.12-1ubuntu1 [5596 B] Get:139 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb-sync1 i386 1.12-1ubuntu1 [9094 B] Get:140 http://ftpmaster.internal/ubuntu bionic/main i386 libdrm-amdgpu1 i386 2.4.88-1 [22.6 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main i386 libpciaccess0 i386 0.13.4-1ubuntu1 [20.2 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main i386 libdrm-intel1 i386 2.4.88-1 [63.7 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/main i386 libdrm-nouveau2 i386 2.4.88-1 [18.3 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main i386 libdrm-radeon1 i386 2.4.88-1 [23.1 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main i386 libllvm5.0 i386 1:5.0-4 [15.3 MB] Get:146 http://ftpmaster.internal/ubuntu bionic/main i386 libsensors4 i386 1:3.4.0-4 [29.3 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/main i386 libgl1-mesa-dri i386 17.2.4-0ubuntu2 [6147 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main i386 libgl1-mesa-glx i386 17.2.4-0ubuntu2 [137 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/main i386 libatspi2.0-0 i386 2.26.2-2 [63.7 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/main i386 libatk-bridge2.0-0 i386 2.26.1-1 [62.3 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/main i386 libfontenc1 i386 1:1.1.3-1 [14.0 kB] Get:152 http://ftpmaster.internal/ubuntu bionic/main i386 libxt6 i386 1:1.1.5-1 [164 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/main i386 libxmu6 i386 2:1.1.2-2 [48.4 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/main i386 libxpm4 i386 1:3.5.12-1 [35.8 kB] Get:155 http://ftpmaster.internal/ubuntu bionic/main i386 libxaw7 i386 2:1.0.13-1 [182 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/main i386 libxcb-shape0 i386 1.12-1ubuntu1 [6036 B] Get:157 http://ftpmaster.internal/ubuntu bionic/main i386 libxv1 i386 2:1.0.11-1 [11.2 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/main i386 x11-utils i386 7.7+3build1 [191 kB] Get:159 http://ftpmaster.internal/ubuntu bionic/main i386 libatk-wrapper-java all 0.33.3-13 [34.1 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main i386 libatk-wrapper-java-jni i386 0.33.3-13 [29.8 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main i386 libasound2-data all 1.1.3-5 [36.1 kB] Get:162 http://ftpmaster.internal/ubuntu bionic/main i386 libasound2 i386 1.1.3-5 [380 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main i386 libgif7 i386 5.1.4-1 [31.7 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main i386 libasyncns0 i386 0.8-6 [12.5 kB] Get:165 http://ftpmaster.internal/ubuntu bionic/main i386 libflac8 i386 1.3.2-1 [152 kB] Get:166 http://ftpmaster.internal/ubuntu bionic/main i386 libvorbis0a i386 1.3.5-4 [85.7 kB] Get:167 http://ftpmaster.internal/ubuntu bionic/main i386 libvorbisenc2 i386 1.3.5-4 [64.4 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main i386 libsndfile1 i386 1.0.28-4 [191 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main i386 libwrap0 i386 7.6.q-27 [47.2 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/main i386 libpulse0 i386 1:11.1-1ubuntu1 [270 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main i386 openjdk-8-jre i386 8u151-b12-1 [70.7 kB] Get:172 http://ftpmaster.internal/ubuntu bionic/main i386 default-jre i386 2:1.8-59ubuntu1 [982 B] Get:173 http://ftpmaster.internal/ubuntu bionic/main i386 openjdk-8-jdk-headless i386 8u151-b12-1 [8252 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main i386 default-jdk-headless i386 2:1.8-59ubuntu1 [1036 B] Get:175 http://ftpmaster.internal/ubuntu bionic/main i386 openjdk-8-jdk i386 8u151-b12-1 [458 kB] Get:176 http://ftpmaster.internal/ubuntu bionic/main i386 default-jdk i386 2:1.8-59ubuntu1 [972 B] Get:177 http://ftpmaster.internal/ubuntu bionic/main i386 fonts-lmodern all 2.004.5-3 [4551 kB] Get:178 http://ftpmaster.internal/ubuntu bionic/universe i386 libhamcrest-java all 1.3-6 [375 kB] Get:179 http://ftpmaster.internal/ubuntu bionic/universe i386 junit4 all 4.12-6 [291 kB] Get:180 http://ftpmaster.internal/ubuntu bionic/universe i386 libapache-pom-java all 18-1 [4720 B] Get:181 http://ftpmaster.internal/ubuntu bionic/main i386 libarchive13 i386 3.2.2-3.1 [328 kB] Get:182 http://ftpmaster.internal/ubuntu bionic/main i386 libcommons-pool-java all 1.6-3 [104 kB] Get:183 http://ftpmaster.internal/ubuntu bionic/main i386 libcommons-collections3-java all 3.2.2-1 [599 kB] Get:184 http://ftpmaster.internal/ubuntu bionic/main i386 libcommons-dbcp-java all 1.4-5ubuntu2 [148 kB] Get:185 http://ftpmaster.internal/ubuntu bionic/main i386 libservlet3.1-java all 8.5.21-1ubuntu1 [390 kB] Get:186 http://ftpmaster.internal/ubuntu bionic/universe i386 libhsqldb-java all 2.4.0-2 [1621 kB] Get:187 http://ftpmaster.internal/ubuntu bionic/universe i386 libbytecode-java all 0.92.svn.20090106-2 [89.1 kB] Get:188 http://ftpmaster.internal/ubuntu bionic/universe i386 libbiojava1.7-java all 1:1.7.1-6 [3165 kB] Get:189 http://ftpmaster.internal/ubuntu bionic/universe i386 libbiojava-java all 1:1.7.1-6 [46.3 kB] Get:190 http://ftpmaster.internal/ubuntu bionic/main i386 libbsd-dev i386 0.8.6-3 [154 kB] Get:191 http://ftpmaster.internal/ubuntu bionic/universe i386 libcommons-cli-java all 1.4-1 [53.8 kB] Get:192 http://ftpmaster.internal/ubuntu bionic/universe i386 libcommons-parent-java all 39-3 [9380 B] Get:193 http://ftpmaster.internal/ubuntu bionic/universe i386 libcommons-lang-java all 2.6-6ubuntu3 [267 kB] Get:194 http://ftpmaster.internal/ubuntu bionic/universe i386 libcommons-logging-java all 1.2-1+build1 [59.5 kB] Get:195 http://ftpmaster.internal/ubuntu bionic/universe i386 libcommons-configuration-java all 1.10-5 [328 kB] Get:196 http://ftpmaster.internal/ubuntu bionic/main i386 libcupsimage2 i386 2.2.6-2 [19.4 kB] Get:197 http://ftpmaster.internal/ubuntu bionic/main i386 libtinfo-dev i386 6.0+20160625-1ubuntu1 [76.2 kB] Get:198 http://ftpmaster.internal/ubuntu bionic/main i386 libncurses5-dev i386 6.0+20160625-1ubuntu1 [176 kB] Get:199 http://ftpmaster.internal/ubuntu bionic/main i386 libedit-dev i386 3.1-20170329-1 [106 kB] Get:200 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libgmpxx4ldbl i386 2:6.1.2+dfsg-1.1 [9368 B] Get:201 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libgmp-dev i386 2:6.1.2+dfsg-1.1 [328 kB] Get:202 http://ftpmaster.internal/ubuntu bionic/main i386 libijs-0.35 i386 0.35-12 [16.0 kB] Get:203 http://ftpmaster.internal/ubuntu bionic/main i386 libjbig2dec0 i386 0.13-5 [58.7 kB] Get:204 http://ftpmaster.internal/ubuntu bionic/main i386 libpaper1 i386 1.1.24+nmu5ubuntu1 [13.7 kB] Get:205 http://ftpmaster.internal/ubuntu bionic/main i386 libgs9-common all 9.21~dfsg+1-0ubuntu3 [5121 kB] Get:206 http://ftpmaster.internal/ubuntu bionic/main i386 libgs9 i386 9.21~dfsg+1-0ubuntu3 [2281 kB] Get:207 http://ftpmaster.internal/ubuntu bionic/main i386 libharfbuzz-icu0 i386 1.7.2-1 [5884 B] Get:208 http://ftpmaster.internal/ubuntu bionic/universe i386 libjaxp1.3-java all 1.3.05-4 [226 kB] Get:209 http://ftpmaster.internal/ubuntu bionic/main i386 libjs-jquery all 3.2.1-1 [152 kB] Get:210 http://ftpmaster.internal/ubuntu bionic/main i386 libkpathsea6 i386 2017.20170613.44572-6ubuntu1 [59.0 kB] Get:211 http://ftpmaster.internal/ubuntu bionic/universe i386 liblog4j1.2-java all 1.2.17-8 [427 kB] Get:212 http://ftpmaster.internal/ubuntu bionic/universe i386 libmail-java all 1.5.6-2 [629 kB] Get:213 http://ftpmaster.internal/ubuntu bionic/main i386 libncursesw5-dev i386 6.0+20160625-1ubuntu1 [203 kB] Get:214 http://ftpmaster.internal/ubuntu bionic/universe i386 libossp-uuid16 i386 1.6.2-1.5build4 [30.7 kB] Get:215 http://ftpmaster.internal/ubuntu bionic/main i386 libpaper-utils i386 1.1.24+nmu5ubuntu1 [8248 B] Get:216 http://ftpmaster.internal/ubuntu bionic/main i386 libpoppler68 i386 0.57.0-2ubuntu5 [816 kB] Get:217 http://ftpmaster.internal/ubuntu bionic/main i386 libpotrace0 i386 1.14-2 [16.7 kB] Get:218 http://ftpmaster.internal/ubuntu bionic/main i386 libptexenc1 i386 2017.20170613.44572-6ubuntu1 [35.2 kB] Get:219 http://ftpmaster.internal/ubuntu bionic/main i386 libreadline-dev i386 7.0-0ubuntu2 [132 kB] Get:220 http://ftpmaster.internal/ubuntu bionic/main i386 libsynctex1 i386 2017.20170613.44572-6ubuntu1 [43.5 kB] Get:221 http://ftpmaster.internal/ubuntu bionic/main i386 libtexlua52 i386 2017.20170613.44572-6ubuntu1 [99.5 kB] Get:222 http://ftpmaster.internal/ubuntu bionic/main i386 libtexluajit2 i386 2017.20170613.44572-6ubuntu1 [246 kB] Get:223 http://ftpmaster.internal/ubuntu bionic/universe i386 libxml-commons-external-java all 1.4.01-2build1 [245 kB] Get:224 http://ftpmaster.internal/ubuntu bionic/universe i386 libxml-commons-resolver1.1-java all 1.2-9 [91.1 kB] Get:225 http://ftpmaster.internal/ubuntu bionic/universe i386 libxerces2-java all 2.11.0-8 [1344 kB] Get:226 http://ftpmaster.internal/ubuntu bionic/universe i386 libxalan2-java all 2.7.2-1 [3302 kB] Get:227 http://ftpmaster.internal/ubuntu bionic/main i386 libzzip-0-13 i386 0.13.62-3.1 [27.6 kB] Get:228 http://ftpmaster.internal/ubuntu bionic/main i386 preview-latex-style all 11.91-1ubuntu1 [185 kB] Get:229 http://ftpmaster.internal/ubuntu bionic/main i386 rubygems-integration all 1.11 [4994 B] Get:230 http://ftpmaster.internal/ubuntu bionic/main i386 ruby-did-you-mean all 1.0.0-2 [8390 B] Get:231 http://ftpmaster.internal/ubuntu bionic/main i386 ruby-minitest all 5.10.3-1 [38.6 kB] Get:232 http://ftpmaster.internal/ubuntu bionic/main i386 ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:233 http://ftpmaster.internal/ubuntu bionic/main i386 ruby-power-assert all 0.3.0-1 [7952 B] Get:234 http://ftpmaster.internal/ubuntu bionic/main i386 ruby-test-unit all 3.2.5-1 [61.1 kB] Get:235 http://ftpmaster.internal/ubuntu bionic/main i386 libruby2.3 i386 2.3.5-1ubuntu4 [3063 kB] Get:236 http://ftpmaster.internal/ubuntu bionic/main i386 ruby2.3 i386 2.3.5-1ubuntu4 [41.1 kB] Get:237 http://ftpmaster.internal/ubuntu bionic/main i386 ruby i386 1:2.3.3 [5634 B] Get:238 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 rake all 12.3.0-1 [44.8 kB] Get:239 http://ftpmaster.internal/ubuntu bionic/universe i386 ruby-text all 1.3.0-1 [13.1 kB] Get:240 http://ftpmaster.internal/ubuntu bionic/universe i386 ruby-cassiopee all 0.1.13-1 [11.0 kB] Get:241 http://ftpmaster.internal/ubuntu bionic/universe i386 swi-prolog-nox i386 7.6.2+dfsg-1 [3436 kB] Get:242 http://ftpmaster.internal/ubuntu bionic/universe i386 swi-prolog-x i386 7.6.2+dfsg-1 [2017 kB] Get:243 http://ftpmaster.internal/ubuntu bionic/universe i386 swi-prolog i386 7.6.2+dfsg-1 [15.3 kB] Get:244 http://ftpmaster.internal/ubuntu bionic/main i386 t1utils i386 1.41-2 [56.5 kB] Get:245 http://ftpmaster.internal/ubuntu bionic/main i386 texlive-binaries i386 2017.20170613.44572-6ubuntu1 [8025 kB] Get:246 http://ftpmaster.internal/ubuntu bionic/main i386 xdg-utils all 1.1.1-1ubuntu3 [59.4 kB] Get:247 http://ftpmaster.internal/ubuntu bionic/main i386 texlive-base all 2017.20171128-1 [18.6 MB] Get:248 http://ftpmaster.internal/ubuntu bionic/universe i386 texlive-fonts-recommended all 2017.20171128-1 [5263 kB] Get:249 http://ftpmaster.internal/ubuntu bionic/main i386 texlive-latex-base all 2017.20171128-1 [948 kB] Get:250 http://ftpmaster.internal/ubuntu bionic/main i386 texlive-latex-recommended all 2017.20171128-1 [14.9 MB] Get:251 http://ftpmaster.internal/ubuntu bionic/universe i386 texlive all 2017.20171128-1 [14.3 kB] Get:252 http://ftpmaster.internal/ubuntu bionic/universe i386 texlive-pictures all 2017.20171128-1 [3997 kB] Get:253 http://ftpmaster.internal/ubuntu bionic/universe i386 texlive-latex-extra all 2017.20171128-1 [10.5 MB] Get:254 http://ftpmaster.internal/ubuntu bionic/universe i386 texlive-plain-generic all 2017.20171128-1 [23.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 225 MB in 16s (13.7 MB/s) (Reading database ... 12674 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package libxau6:i386. (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../00-libxau6_1%3a1.0.8-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../01-libbsd0_0.8.6-3_i386.deb ... Unpacking libbsd0:i386 (0.8.6-3) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../02-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../03-libxcb1_1.12-1ubuntu1_i386.deb ... Unpacking libxcb1:i386 (1.12-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../04-libx11-data_2%3a1.6.4-3_all.deb ... Unpacking libx11-data (2:1.6.4-3) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../05-libx11-6_2%3a1.6.4-3_i386.deb ... 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Setting up libjs-jquery (3.2.1-1) ... Setting up libtexlua52:i386 (2017.20170613.44572-6ubuntu1) ... Setting up libcommons-collections3-java (3.2.2-1) ... Setting up libexpat1:i386 (2.2.5-0ubuntu2) ... Setting up libicu60:i386 (60.1-1ubuntu2) ... Setting up libjaxp1.3-java (1.3.05-4) ... Setting up libgflags2.2 (2.2.1-1) ... Setting up libgtk2.0-common (2.24.31-4ubuntu1) ... Setting up libsynctex1:i386 (2017.20170613.44572-6ubuntu1) ... Setting up libasyncns0:i386 (0.8-6) ... Setting up libptexenc1:i386 (2017.20170613.44572-6ubuntu1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libmail-java (1.5.6-2) ... Setting up mime-support (3.60ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:i386 (2.8-4) ... Setting up libjbig0:i386 (2.1-3.1) ... Setting up libpcsclite1:i386 (1.8.22-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.8-2) ... Setting up libxml-commons-external-java (1.4.01-2build1) ... Setting up libelf1:i386 (0.170-0.1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:i386 (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up libasound2-data (1.1.3-5) ... Setting up libxshmfence1:i386 (1.2-1) ... Setting up libossp-uuid16:i386 (1.6.2-1.5build4) ... Setting up java-common (0.59ubuntu1) ... Setting up libtinfo-dev:i386 (6.0+20160625-1ubuntu1) ... Setting up libgdk-pixbuf2.0-common (2.36.11-1) ... Setting up libllvm5.0:i386 (1:5.0-4) ... Setting up libdatrie1:i386 (0.2.10-5) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libgif7:i386 (5.1.4-1) ... Setting up libjpeg-turbo8:i386 (1.5.2-0ubuntu5) ... Setting up libpipeline1:i386 (1.5.0-1) ... Setting up libglapi-mesa:i386 (17.2.4-0ubuntu2) ... Setting up m4 (1.4.18-1) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libbsd0:i386 (0.8.6-3) ... Setting up libantlr3-runtime-java (3.5.2-8) ... Setting up libnspr4:i386 (2:4.16-1ubuntu2) ... Setting up ucf (3.0036) ... Setting up libboost-serialization1.65.1:i386 (1.65.1+dfsg-0ubuntu4) ... Setting up libxml2:i386 (2.9.4+dfsg1-5.1ubuntu1) ... Setting up libfreetype6:i386 (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libasound2:i386 (1.1.3-5) ... Setting up libmagic1:i386 (1:5.32-1) ... Setting up libdrm-common (2.4.88-1) ... Setting up libgraphite2-3:i386 (1.3.10-6) ... Setting up libcroco3:i386 (0.6.12-1) ... Setting up libogg0:i386 (1.3.2-1) ... Setting up libncurses5-dev:i386 (6.0+20160625-1ubuntu1) ... Setting up libatk1.0-data (2.26.1-1) ... Setting up liblog4j1.2-java (1.2.17-8) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up libjbig2dec0:i386 (0.13-5) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libyaml-0-2:i386 (0.1.7-2ubuntu3) ... Setting up libx11-xcb1:i386 (2:1.6.4-3) ... Setting up libpixman-1-0:i386 (0.34.0-1) ... Setting up libservlet3.1-java (8.5.21-1ubuntu1) ... Setting up libunwind8 (1.1-4.1ubuntu2) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up libncursesw5-dev:i386 (6.0+20160625-1ubuntu1) ... Setting up libgoogle-glog0v5 (0.3.5-1) ... Setting up t1utils (1.41-2) ... Setting up libatk1.0-0:i386 (2.26.1-1) ... Setting up libcommons-pool-java (1.6-3) ... Processing triggers for systemd (235-3ubuntu2) ... Setting up libapache-pom-java (18-1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libreadline-dev:i386 (7.0-0ubuntu2) ... Setting up libijs-0.35:i386 (0.35-12) ... Setting up libfontenc1:i386 (1:1.1.3-1) ... Setting up libstringtemplate4-java (4.0.8-2) ... Setting up rubygems-integration (1.11) ... Setting up libpciaccess0:i386 (0.13.4-1ubuntu1) ... Setting up libpotrace0 (1.14-2) ... Setting up libsensors4:i386 (1:3.4.0-4) ... Setting up shared-mime-info (1.9-2) ... Setting up libthai-data (0.1.27-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up bsdmainutils (9.0.14ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:i386 (2:6.1.2+dfsg-1.1) ... Setting up ruby-minitest (5.10.3-1) ... Setting up libvorbis0a:i386 (1.3.5-4) ... Setting up libzzip-0-13:i386 (0.13.62-3.1) ... Setting up x11-common (1:7.7+19ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1ubuntu3) ... Processing triggers for ca-certificates (20170717) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Setting up hicolor-icon-theme (0.17-1) ... Setting up libtexluajit2:i386 (2017.20170613.44572-6ubuntu1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:i386 (2.7.14-4) ... Setting up libhamcrest-java (1.3-6) ... Setting up libxau6:i386 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libdbus-1-3:i386 (1.12.2-1ubuntu1) ... Setting up libcommons-cli-java (1.4-1) ... Setting up liblzo2-2:i386 (2.08-1.2) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libwrap0:i386 (7.6.q-27) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libavahi-common-data:i386 (0.6.32-1ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libgmp-dev:i386 (2:6.1.2+dfsg-1.1) ... Setting up libpaper1:i386 (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up fontconfig-config (2.12.6-0ubuntu1) ... Setting up tex-common (6.09) ... update-language: texlive-base not installed and configured, doing nothing! Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libarchive13:i386 (3.2.2-3.1) ... Setting up libbsd-dev:i386 (0.8.6-3) ... Setting up libflac8:i386 (1.3.2-1) ... Setting up libhsqldb-java (2.4.0-2) ... Setting up python2.7 (2.7.14-4) ... Setting up libnss3:i386 (2:3.32-1ubuntu3) ... Setting up libharfbuzz0b:i386 (1.7.2-1) ... Setting up libtiff5:i386 (4.0.8-6) ... Setting up preview-latex-style (11.91-1ubuntu1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:i386 (0.1.27-1) ... Setting up file (1:5.32-1) ... Setting up libcommons-dbcp-java (1.4-5ubuntu2) ... Setting up libdrm2:i386 (2.4.88-1) ... Setting up libcommons-parent-java (39-3) ... Setting up libxerces2-java (2.11.0-8) ... Setting up libpython-stdlib:i386 (2.7.14-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libdrm-intel1:i386 (2.4.88-1) ... Setting up libxalan2-java (2.7.2-1) ... Setting up libcassie1v5 (1.0.5-2build1) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:i386 (2:1.0.9-2) ... Setting up libedit-dev:i386 (3.1-20170329-1) ... Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libavahi-common3:i386 (0.6.32-1ubuntu1) ... Setting up libdrm-radeon1:i386 (2.4.88-1) ... Setting up libvorbisenc2:i386 (1.3.5-4) ... Setting up libdrm-nouveau2:i386 (2.4.88-1) ... Setting up libcommons-lang-java (2.6-6ubuntu3) ... Setting up libxcb1:i386 (1.12-1ubuntu1) ... Setting up python (2.7.14-2ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up libxcb-present0:i386 (1.12-1ubuntu1) ... Setting up libfontconfig1:i386 (2.12.6-0ubuntu1) ... Setting up libxcb-dri2-0:i386 (1.12-1ubuntu1) ... Setting up libsm6:i386 (2:1.2.2-1) ... Setting up libxcb-dri3-0:i386 (1.12-1ubuntu1) ... Setting up libxcb-glx0:i386 (1.12-1ubuntu1) ... Setting up libxcb-render0:i386 (1.12-1ubuntu1) ... Setting up libharfbuzz-icu0:i386 (1.7.2-1) ... Setting up po-debconf (1.0.20) ... Setting up libdrm-amdgpu1:i386 (2.4.88-1) ... Setting up libx11-6:i386 (2:1.6.4-3) ... Setting up libgl1-mesa-dri:i386 (17.2.4-0ubuntu2) ... Setting up libcommons-logging-java (1.2-1+build1) ... Setting up libxmuu1:i386 (2:1.1.2-2) ... Setting up swi-prolog-nox (7.6.2+dfsg-1) ... update-alternatives: using /usr/bin/swipl to provide /usr/bin/prolog (prolog) in auto mode Setting up libxcb-sync1:i386 (1.12-1ubuntu1) ... Setting up libsndfile1:i386 (1.0.28-4) ... Setting up cassiopee (1.0.5-2build1) ... Setting up libxcomposite1:i386 (1:0.4.4-2) ... Setting up libxcb-shm0:i386 (1.12-1ubuntu1) ... Setting up libxpm4:i386 (1:3.5.12-1) ... Setting up libxt6:i386 (1:1.1.5-1) ... Setting up libxcb-shape0:i386 (1.12-1ubuntu1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libavahi-client3:i386 (0.6.32-1ubuntu1) ... Setting up libxft2:i386 (2.3.2-1) ... Setting up libpoppler68:i386 (0.57.0-2ubuntu5) ... Setting up fontconfig (2.12.6-0ubuntu1) ... Regenerating fonts cache... done. Setting up libcups2:i386 (2.2.6-2) ... Setting up libcommons-configuration-java (1.10-5) ... Setting up libxdamage1:i386 (1:1.1.4-3) ... Setting up libxext6:i386 (2:1.3.3-1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up libatspi2.0-0:i386 (2.26.2-2) ... Setting up libgdk-pixbuf2.0-0:i386 (2.36.11-1) ... Setting up libpulse0:i386 (1:11.1-1ubuntu1) ... Setting up libxtst6:i386 (2:1.2.3-1) ... Setting up libxmu6:i386 (2:1.1.2-2) ... Setting up libcupsimage2:i386 (2.2.6-2) ... Setting up gtk-update-icon-cache (3.22.26-2ubuntu1) ... Setting up libxcursor1:i386 (1:1.1.14-3ubuntu1) ... Setting up libxxf86dga1:i386 (2:1.1.4-1) ... Setting up libpango-1.0-0:i386 (1.40.13-2) ... Setting up libatk-bridge2.0-0:i386 (2.26.1-1) ... Setting up libxv1:i386 (2:1.0.11-1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1) ... Setting up libgs9:i386 (9.21~dfsg+1-0ubuntu3) ... Setting up libxrandr2:i386 (2:1.5.1-1) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up libxaw7:i386 (2:1.0.13-1) ... Setting up libcairo2:i386 (1.15.8-2) ... Setting up libxinerama1:i386 (2:1.1.3-1) ... Setting up texlive-binaries (2017.20170613.44572-6ubuntu1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up swi-prolog-x (7.6.2+dfsg-1) ... Setting up libpangoft2-1.0-0:i386 (1.40.13-2) ... Setting up swi-prolog (7.6.2+dfsg-1) ... Setting up libgl1-mesa-glx:i386 (17.2.4-0ubuntu2) ... update-alternatives: using /usr/lib/i386-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/i386-linux-gnu_GL.conf (i386-linux-gnu_gl_conf) in auto mode Setting up texlive-base (2017.20171128-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up texlive-fonts-recommended (2017.20171128-1) ... Setting up texlive-plain-generic (2017.20171128-1) ... Setting up texlive-latex-base (2017.20171128-1) ... Setting up texlive-latex-recommended (2017.20171128-1) ... Setting up texlive-pictures (2017.20171128-1) ... Setting up x11-utils (7.7+3build1) ... Setting up libpangocairo-1.0-0:i386 (1.40.13-2) ... Setting up texlive (2017.20171128-1) ... Setting up libatk-wrapper-java (0.33.3-13) ... Setting up librsvg2-2:i386 (2.40.18-2) ... Setting up texlive-latex-extra (2017.20171128-1) ... Setting up librsvg2-common:i386 (2.40.18-2) ... Setting up libatk-wrapper-java-jni:i386 (0.33.3-13) ... Setting up openjdk-8-jre-headless:i386 (8u151-b12-1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode OpenJDK Server VM warning: ignoring option PermSize=128m; support was removed in 8.0 Setting up adwaita-icon-theme (3.26.1-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:i386 (2.24.31-4ubuntu1) ... Setting up ca-certificates-java (20170930) ... Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:AffirmTrust_Premium.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Taiwan_GRCA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:ISRG_Root_X1.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:ACEDICOM_Root.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:PSCProcert.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:CNNIC_ROOT.pem Adding debian:Certum_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:ACCVRAIZ1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Certigna.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:AffirmTrust_Networking.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:EC-ACC.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:AddTrust_External_Root.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:SecureTrust_CA.pem Adding debian:Izenpe.com.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem done. Setting up dh-autoreconf (15) ... Setting up openjdk-8-jdk-headless:i386 (8u151-b12-1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode Setting up humanity-icon-theme (0.6.13) ... Setting up ruby2.3 (2.3.5-1ubuntu4) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up openjdk-8-jre:i386 (8u151-b12-1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up ant (1.9.9-5) ... Setting up junit4 (4.12-6) ... Setting up antlr3 (3.5.2-8) ... Setting up ruby (1:2.3.3) ... Setting up default-jre-headless (2:1.8-59ubuntu1) ... Setting up default-jdk-headless (2:1.8-59ubuntu1) ... Setting up debhelper (10.10.9ubuntu1) ... Setting up ruby-test-unit (3.2.5-1) ... Setting up openjdk-8-jdk:i386 (8u151-b12-1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ubuntu-mono (16.10+18.04.20171115.1-0ubuntu1) ... Setting up default-jre (2:1.8-59ubuntu1) ... Setting up rake (12.3.0-1) ... Setting up ant-optional (1.9.9-5) ... Setting up ruby-text (1.3.0-1) ... Setting up ruby-cassiopee (0.1.13-1) ... Setting up libruby2.3:i386 (2.3.5-1ubuntu4) ... Setting up default-jdk (2:1.8-59ubuntu1) ... Setting up libbytecode-java (0.92.svn.20090106-2) ... Setting up libbiojava1.7-java (1:1.7.1-6) ... Setting up libbiojava-java (1:1.7.1-6) ... Setting up sbuild-build-depends-logol-dummy (0.invalid.0) ... (Reading database ... 56451 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for tex-common (6.09) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for libgdk-pixbuf2.0-0:i386 (2.36.11-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Processing triggers for systemd (235-3ubuntu2) ... Processing triggers for ca-certificates (20170717) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic amd64 (i686) Toolchain package versions: binutils_2.29.1-10ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-17ubuntu1 gcc-7_7.2.0-17ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-17ubuntu1 libstdc++6_7.2.0-17ubuntu1 linux-libc-dev_4.14.0-11.13 Package versions: adduser_3.116ubuntu1 advancecomp_2.0-1 adwaita-icon-theme_3.26.1-1ubuntu1 ant_1.9.9-5 ant-optional_1.9.9-5 antlr3_3.5.2-8 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-10ubuntu1 binutils-common_2.29.1-10ubuntu1 binutils-i686-linux-gnu_2.29.1-10ubuntu1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 ca-certificates-java_20170930 cassiopee_1.0.5-2build1 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-17ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.65 debhelper_10.10.9ubuntu1 debianutils_4.8.3 default-jdk_2:1.8-59ubuntu1 default-jdk-headless_2:1.8-59ubuntu1 default-jre_2:1.8-59ubuntu1 default-jre-headless_2:1.8-59ubuntu1 dh-autoreconf_15 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.2-0.1ubuntu1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0ubuntu1 fontconfig-config_2.12.6-0ubuntu1 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-3 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-17ubuntu1 gawk_1:4.1.4+dfsg-1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-17ubuntu1 gcc-7-base_7.2.0-17ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gtk-update-icon-cache_3.22.26-2ubuntu1 gzip_1.6-5ubuntu1 hicolor-icon-theme_0.17-1 hostname_3.18 humanity-icon-theme_0.6.13 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 java-common_0.59ubuntu1 junit4_4.12-6 libacl1_2.2.52-3build1 libantlr3-runtime-java_3.5.2-8 libapache-pom-java_18-1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-3.1 libasan4_7.2.0-17ubuntu1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libasound2_1.1.3-5 libasound2-data_1.1.3-5 libassuan0_2.4.5-1 libasyncns0_0.8-6 libatk-bridge2.0-0_2.26.1-1 libatk-wrapper-java_0.33.3-13 libatk-wrapper-java-jni_0.33.3-13 libatk1.0-0_2.26.1-1 libatk1.0-data_2.26.1-1 libatomic1_7.2.0-17ubuntu1 libatspi2.0-0_2.26.2-2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libavahi-client3_0.6.32-1ubuntu1 libavahi-common-data_0.6.32-1ubuntu1 libavahi-common3_0.6.32-1ubuntu1 libbinutils_2.29.1-10ubuntu1 libbiojava-java_1:1.7.1-6 libbiojava1.7-java_1:1.7.1-6 libblkid1_2.30.2-0.1ubuntu1 libboost-serialization1.65.1_1.65.1+dfsg-0ubuntu4 libbsd-dev_0.8.6-3 libbsd0_0.8.6-3 libbytecode-java_0.92.svn.20090106-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcairo2_1.15.8-2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcassie1v5_1.0.5-2build1 libcc1-0_7.2.0-17ubuntu1 libcilkrts5_7.2.0-17ubuntu1 libcomerr2_1.43.7-1 libcommons-cli-java_1.4-1 libcommons-collections3-java_3.2.2-1 libcommons-configuration-java_1.10-5 libcommons-dbcp-java_1.4-5ubuntu2 libcommons-lang-java_2.6-6ubuntu3 libcommons-logging-java_1.2-1+build1 libcommons-parent-java_39-3 libcommons-pool-java_1.6-3 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcups2_2.2.6-2 libcupsimage2_2.2.6-2 libcurl3-gnutls_7.55.1-1ubuntu3 libdatrie1_0.2.10-5 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libdrm-amdgpu1_2.4.88-1 libdrm-common_2.4.88-1 libdrm-intel1_2.4.88-1 libdrm-nouveau2_2.4.88-1 libdrm-radeon1_2.4.88-1 libdrm2_2.4.88-1 libedit-dev_3.1-20170329-1 libedit2_3.1-20170329-1 libelf1_0.170-0.1 libexpat1_2.2.5-0ubuntu2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.2-0.1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libflac8_1.3.2-1 libfontconfig1_2.12.6-0ubuntu1 libfontenc1_1:1.1.3-1 libfreetype6_2.8-0.2ubuntu2 libgcc-7-dev_7.2.0-17ubuntu1 libgcc1_1:7.2.0-17ubuntu1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgdk-pixbuf2.0-0_2.36.11-1 libgdk-pixbuf2.0-common_2.36.11-1 libgflags2.2_2.2.1-1 libgif7_5.1.4-1 libgl1-mesa-dri_17.2.4-0ubuntu2 libgl1-mesa-glx_17.2.4-0ubuntu2 libglapi-mesa_17.2.4-0ubuntu2 libglib2.0-0_2.54.1-1ubuntu1 libgmp-dev_2:6.1.2+dfsg-1.1 libgmp10_2:6.1.2+dfsg-1.1 libgmpxx4ldbl_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-17ubuntu1 libgoogle-glog0v5_0.3.5-1 libgpg-error0_1.27-5 libgraphite2-3_1.3.10-6 libgs9_9.21~dfsg+1-0ubuntu3 libgs9-common_9.21~dfsg+1-0ubuntu3 libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libgtk2.0-0_2.24.31-4ubuntu1 libgtk2.0-common_2.24.31-4ubuntu1 libhamcrest-java_1.3-6 libharfbuzz-icu0_1.7.2-1 libharfbuzz0b_1.7.2-1 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhsqldb-java_2.4.0-2 libhx509-5-heimdal_7.4.0.dfsg.1-2 libice6_2:1.0.9-2 libicu60_60.1-1ubuntu2 libidn11_1.33-2 libidn2-0_2.0.4-1 libijs-0.35_0.35-12 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-1 libitm1_7.2.0-17ubuntu1 libjaxp1.3-java_1.3.05-4 libjbig0_2.1-3.1 libjbig2dec0_0.13-5 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libjs-jquery_3.2.1-1 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu2 libkpathsea6_2017.20170613.44572-6ubuntu1 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 liblcms2-2_2.8-4 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 libllvm5.0_1:5.0-4 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblog4j1.2-java_1.2.17-8 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmail-java_1.5.6-2 libmount1_2.30.2-0.1ubuntu1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmpx2_7.2.0-17ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncurses5-dev_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libncursesw5-dev_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-3 libnspr4_2:4.16-1ubuntu2 libnss3_2:3.32-1ubuntu3 libogg0_1.3.2-1 libossp-uuid16_1.6.2-1.5build4 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpango-1.0-0_1.40.13-2 libpangocairo-1.0-0_1.40.13-2 libpangoft2-1.0-0_1.40.13-2 libpaper-utils_1.1.24+nmu5ubuntu1 libpaper1_1.1.24+nmu5ubuntu1 libpciaccess0_0.13.4-1ubuntu1 libpcre3_2:8.39-8 libpcsclite1_1.8.22-1ubuntu1 libperl5.26_5.26.1-3 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-1 libpng16-16_1.6.34-1 libpoppler68_0.57.0-2ubuntu5 libpotrace0_1.14-2 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.19.1-4 libptexenc1_2017.20170613.44572-6ubuntu1 libpulse0_1:11.1-1ubuntu1 libpython-stdlib_2.7.14-2ubuntu1 libpython2.7-minimal_2.7.14-4 libpython2.7-stdlib_2.7.14-4 libquadmath0_7.2.0-17ubuntu1 libreadline-dev_7.0-0ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librsvg2-2_2.40.18-2 librsvg2-common_2.40.18-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libruby2.3_2.3.5-1ubuntu4 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsensors4_1:3.4.0-4 libsepol1_2.7-1 libservlet3.1-java_8.5.21-1ubuntu1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.30.2-0.1ubuntu1 libsndfile1_1.0.28-4 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu15 libstdc++-7-dev_7.2.0-17ubuntu1 libstdc++6_7.2.0-17ubuntu1 libstringtemplate4-java_4.0.8-2 libsynctex1_2017.20170613.44572-6ubuntu1 libsystemd0_235-3ubuntu2 libtasn1-6_4.12-3 libtexlua52_2017.20170613.44572-6ubuntu1 libtexluajit2_2017.20170613.44572-6ubuntu1 libthai-data_0.1.27-1 libthai0_0.1.27-1 libtiff5_4.0.8-6 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160625-1ubuntu1 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.2.0-17ubuntu1 libudev1_235-3ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libunwind8_1.1-4.1ubuntu2 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1ubuntu1 libvorbis0a_1.3.5-4 libvorbisenc2_1.3.5-4 libwind0-heimdal_7.4.0.dfsg.1-2 libwrap0_7.6.q-27 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libx11-xcb1_2:1.6.4-3 libxalan2-java_2.7.2-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-dri2-0_1.12-1ubuntu1 libxcb-dri3-0_1.12-1ubuntu1 libxcb-glx0_1.12-1ubuntu1 libxcb-present0_1.12-1ubuntu1 libxcb-render0_1.12-1ubuntu1 libxcb-shape0_1.12-1ubuntu1 libxcb-shm0_1.12-1ubuntu1 libxcb-sync1_1.12-1ubuntu1 libxcb1_1.12-1ubuntu1 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.1.14-3ubuntu1 libxdamage1_1:1.1.4-3 libxdmcp6_1:1.1.2-3 libxerces2-java_2.11.0-8 libxext6_2:1.3.3-1 libxfixes3_1:5.0.3-1 libxft2_2.3.2-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.3-1 libxml-commons-external-java_1.4.01-2build1 libxml-commons-resolver1.1-java_1.2-9 libxml2_2.9.4+dfsg1-5.1ubuntu1 libxmu6_2:1.1.2-2 libxmuu1_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrandr2_2:1.5.1-1 libxrender1_1:0.9.10-1 libxshmfence1_1.2-1 libxt6_1:1.1.5-1 libxtst6_2:1.2.3-1 libxv1_2:1.0.11-1 libxxf86dga1_2:1.1.4-1 libxxf86vm1_1:1.1.4-1 libyaml-0-2_0.1.7-2ubuntu3 libzzip-0-13_0.13.62-3.1 linux-libc-dev_4.14.0-11.13 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-4 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.30.2-0.1ubuntu1 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openjdk-8-jdk_8u151-b12-1 openjdk-8-jdk-headless_8u151-b12-1 openjdk-8-jre_8u151-b12-1 openjdk-8-jre-headless_8u151-b12-1 openssl_1.0.2g-1ubuntu15 optipng_0.7.6-1ubuntu1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 poppler-data_0.4.8-2 preview-latex-style_11.91-1ubuntu1 procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-minimal_2.7.14-2ubuntu1 python2.7_2.7.14-4 python2.7-minimal_2.7.14-4 rake_12.3.0-1 readline-common_7.0-0ubuntu2 ruby_1:2.3.3 ruby-cassiopee_0.1.13-1 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.10.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.2.5-1 ruby-text_1.3.0-1 ruby2.3_2.3.5-1ubuntu4 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-logol-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 shared-mime-info_1.9-2 swi-prolog_7.6.2+dfsg-1 swi-prolog-nox_7.6.2+dfsg-1 swi-prolog-x_7.6.2+dfsg-1 systemd_235-3ubuntu2 systemd-sysv_235-3ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 t1utils_1.41-2 tar_1.29b-2 tex-common_6.09 texlive_2017.20171128-1 texlive-base_2017.20171128-1 texlive-binaries_2017.20170613.44572-6ubuntu1 texlive-fonts-recommended_2017.20171128-1 texlive-latex-base_2017.20171128-1 texlive-latex-extra_2017.20171128-1 texlive-latex-recommended_2017.20171128-1 texlive-pictures_2017.20171128-1 texlive-plain-generic_2017.20171128-1 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ubuntu-mono_16.10+18.04.20171115.1-0ubuntu1 ucf_3.0036 util-linux_2.30.2-0.1ubuntu1 x11-common_1:7.7+19ubuntu3 x11-utils_7.7+3build1 xdg-utils_1.1.1-1ubuntu3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Dec 7 16:55:40 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./logol_1.7.6-1.dsc dpkg-source: info: extracting logol in logol-1.7.6 dpkg-source: info: unpacking logol_1.7.6.orig.tar.bz2 dpkg-source: info: unpacking logol_1.7.6-1.debian.tar.xz dpkg-source: info: applying remove_drmaa_support dpkg-source: info: applying fixLibPath dpkg-source: info: applying setDebianDirs dpkg-source: info: applying fix_doc_generation dpkg-source: info: applying remove_rubygems_usage dpkg-source: info: applying fix_antlr35 dpkg-source: info: applying fix_swipl_declarations Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13829477 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13829477 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13829477 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package logol dpkg-buildpackage: info: source version 1.7.6-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build logol-1.7.6 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi dh_auto_clean ant clean Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. clean: BUILD SUCCESSFUL Total time: 0 seconds make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' if [ -e tools/pldoc.sty.upstream ]; then mv tools/pldoc.sty.upstream tools/pldoc.sty; fi if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi dh_clean rm -f Swi*.xml rm -f prolog/*.exe rm -f lib/*.jar rm -f *.log rm -f src/org/irisa/genouest/logol/parser/* rm -f tools/suffixSearch.sh rm -rf test/tmp rm -rf test/results make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' if [ ! -e lib ]; then mkdir -p lib; fi mv tools/pldoc.sty tools/pldoc.sty.upstream dh_auto_build -- -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 ant -Duser.name debian -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. updatemod: setup: compile_swi_exe: [exec] CC="gcc" [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="i386" [exec] PLLIBS="" [exec] PLLIB="-lswipl" [exec] PLCFLAGS="-pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_GNU_SOURCE -I/usr/include/ncursesw" [exec] PLLDFLAGS="-rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/swi-prolog-BP86lU/swi-prolog-7.6.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread" [exec] PLSOEXT="so" [exec] PLTHREADS="yes" [exec] logolSwiMain.c: In function ‘main’: [exec] logolSwiMain.c:50:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(ResultFile,argv[2]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:52:4: warning: ignoring return value of ‘PL_next_solution’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_next_solution(query); [exec] ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:58:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(File,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:62:4: warning: ignoring return value of ‘PL_put_integer’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_integer(HeaderSize, header); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:67:4: warning: ignoring return value of ‘PL_next_solution’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_next_solution(query); [exec] ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:76:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile,argv[6]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:78:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(InFile,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:80:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(OutFile,argv[2]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:82:4: warning: ignoring return value of ‘PL_put_integer’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_integer(Offset,offset); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:102:4: warning: ignoring return value of ‘PL_next_solution’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_next_solution(query); [exec] ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:120:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(ResultFile,argv[2]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:122:4: warning: ignoring return value of ‘PL_next_solution’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_next_solution(query); [exec] ^~~~~~~~~~~~~~~~~~~~~~~ [exec] Warning: /<>/prolog/sicstus.pl:495: [exec] Singleton variables: [Before,Length,CountPos,CountLength] [exec] Warning: /<>/prolog/logol.pl:200: [exec] Singleton variables: [Max] [exec] Warning: /<>/prolog/logol.pl:215: [exec] Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:298: [exec] Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:298: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:387: [exec] Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:401: [exec] Singleton variables: [Unique,Out,Exit] [exec] Warning: /<>/prolog/logol.pl:427: [exec] Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:465: [exec] Singleton variables: [NewPos] [exec] Warning: /<>/prolog/logol.pl:465: [exec] Singleton variable in branch: NewPos [exec] Warning: /<>/prolog/logol.pl:507: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:510: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:549: [exec] Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:568: [exec] Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:583: [exec] Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:583: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: IntermediateSpacer [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:666: [exec] Singleton variables: [InputLength] [exec] Warning: /<>/prolog/logol.pl:672: [exec] Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /<>/prolog/logol.pl:717: [exec] Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /<>/prolog/logol.pl:957: [exec] Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:986: [exec] Singleton variables: [Word] [exec] Warning: /<>/prolog/logol.pl:1016: [exec] Singleton variables: [N,Min,Max,Z,Spacer,Word] [exec] Warning: /<>/prolog/logol.pl:1060: [exec] Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:1154: [exec] Singleton variables: [Errors] [exec] Warning: /<>/prolog/logol.pl:1258: [exec] Singleton variables: [Morph,Reverse] [exec] Warning: /<>/prolog/logol.pl:1262: [exec] Singleton variables: [Morph] [exec] Warning: /<>/prolog/logol.pl:1273: [exec] Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /<>/prolog/logol.pl:1309: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1333: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1637: [exec] Singleton variables: [Name] [exec] Warning: /<>/prolog/logol.pl:2028: [exec] Singleton variables: [Matrix] [exec] Warning: /<>/prolog/logol.pl:2069: [exec] Singleton variables: [Type] [exec] Warning: /<>/prolog/logol.pl:2172: [exec] Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:2327: [exec] Singleton variables: [FilterPredicate] [exec] Warning: /<>/prolog/logol.pl:2342: [exec] Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /<>/prolog/logol.pl:2372: [exec] Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2387: [exec] Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2427: [exec] Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:2427: [exec] Singleton variable in branch: Max [exec] Singleton variable in branch: Z [exec] Warning: /<>/prolog/logol.pl:2462: [exec] Singleton variables: [VarId] [exec] Warning: /<>/prolog/logol.pl:2490: [exec] Singleton variables: [X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2508: [exec] Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2526: [exec] Singleton variables: [ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2568: [exec] Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /<>/prolog/logol.pl:2596: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2600: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2616: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2636: [exec] Singleton variables: [ID] [exec] Warning: /<>/prolog/logol.pl:2639: [exec] Singleton variables: [OPTVAR] [exec] Warning: /<>/prolog/logol.pl:2645: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2693: [exec] Singleton variables: [DATA] [exec] Warning: /<>/prolog/logol.pl:2744: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2747: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2750: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2753: [exec] Singleton variables: [MATCH,ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2758: [exec] Singleton variables: [VAR,VARFOUND] [exec] Warning: /<>/prolog/logol.pl:2761: [exec] Singleton variables: [VAR,VARFOUND] [exec] % autoloading prolog_codewalk:must_be/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading qsave:current_foreign_library/2 from /usr/lib/swi-prolog/library/shlib [exec] % autoloading prolog_debug:backtrace/1 from /usr/lib/swi-prolog/library/prolog_stack [exec] % autoloading process:maplist/3 from /usr/lib/swi-prolog/library/apply [exec] % autoloading process:existence_error/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading process:must_be/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading prolog_codewalk:portray_clause/1 from /usr/lib/swi-prolog/library/listing [exec] % autoloading prolog_codewalk:clause_info/4 from /usr/lib/swi-prolog/library/prolog_clause [exec] % autoloading prolog_codewalk:initialization_layout/4 from /usr/lib/swi-prolog/library/prolog_clause [exec] % autoloading sicstus:read_line_to_codes/2 from /usr/lib/swi-prolog/library/readutil [exec] % autoloading oset:reverse/2 from /usr/lib/swi-prolog/library/lists [exec] % autoloading record:member/2 from /usr/lib/swi-prolog/library/lists [exec] % autoloading error:assertion/1 from /usr/lib/swi-prolog/library/debug [exec] % autoloading prolog_codewalk:clause_name/2 from /usr/lib/swi-prolog/library/prolog_clause [exec] % Found new meta-predicates in iteration 1 (0.154 sec) [exec] % :- meta_predicate logol:callpred(0,*,*). [exec] % :- meta_predicate logol:notpred_pos(*,*,0,*,*,*). [exec] % Restarting analysis ... [exec] % Autoloader: iteration 1 resolved 9 predicates and loaded 14 files in 0.225 seconds. Restarting ... [exec] % Autoloader: loaded 9 files in 2 iterations in 0.291 seconds [exec] % halt [exec] eval `swipl --dump-runtime-variables` [exec] gcc -c -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_GNU_SOURCE -I/usr/include/ncursesw -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o logolSwiMain.o logolSwiMain.c [exec] gcc -o logol.exe -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/swi-prolog-BP86lU/swi-prolog-7.6.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread logolSwiMain.o -L/usr/lib/swi-prolog/lib/i386 -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-9799',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-9799 >> logol.exe [exec] chmod 775 logol.exe [exec] rm logolSwiMain.o [exec] rm pltmp-9799 [exec] CC="gcc" [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="i386" [exec] PLLIBS="" [exec] PLLIB="-lswipl" [exec] PLCFLAGS="-pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_GNU_SOURCE -I/usr/include/ncursesw" [exec] PLLDFLAGS="-rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/swi-prolog-BP86lU/swi-prolog-7.6.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread" [exec] PLSOEXT="so" [exec] PLTHREADS="yes" [exec] preSwiMain.c: In function ‘main’: [exec] preSwiMain.c:40:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile1,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:42:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile2,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:44:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile3,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:46:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile4,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] Warning: /<>/prolog/sicstus.pl:495: [exec] Singleton variables: [Before,Length,CountPos,CountLength] [exec] Warning: /<>/prolog/logol.pl:200: [exec] Singleton variables: [Max] [exec] Warning: /<>/prolog/logol.pl:215: [exec] Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:298: [exec] Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:298: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:387: [exec] Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:401: [exec] Singleton variables: [Unique,Out,Exit] [exec] Warning: /<>/prolog/logol.pl:427: [exec] Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:465: [exec] Singleton variables: [NewPos] [exec] Warning: /<>/prolog/logol.pl:465: [exec] Singleton variable in branch: NewPos [exec] Warning: /<>/prolog/logol.pl:507: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:510: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:549: [exec] Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:568: [exec] Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:583: [exec] Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:583: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: IntermediateSpacer [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:666: [exec] Singleton variables: [InputLength] [exec] Warning: /<>/prolog/logol.pl:672: [exec] Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /<>/prolog/logol.pl:717: [exec] Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /<>/prolog/logol.pl:957: [exec] Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:986: [exec] Singleton variables: [Word] [exec] Warning: /<>/prolog/logol.pl:1016: [exec] Singleton variables: [N,Min,Max,Z,Spacer,Word] [exec] Warning: /<>/prolog/logol.pl:1060: [exec] Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:1154: [exec] Singleton variables: [Errors] [exec] Warning: /<>/prolog/logol.pl:1258: [exec] Singleton variables: [Morph,Reverse] [exec] Warning: /<>/prolog/logol.pl:1262: [exec] Singleton variables: [Morph] [exec] Warning: /<>/prolog/logol.pl:1273: [exec] Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /<>/prolog/logol.pl:1309: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1333: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1637: [exec] Singleton variables: [Name] [exec] Warning: /<>/prolog/logol.pl:2028: [exec] Singleton variables: [Matrix] [exec] Warning: /<>/prolog/logol.pl:2069: [exec] Singleton variables: [Type] [exec] Warning: /<>/prolog/logol.pl:2172: [exec] Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:2327: [exec] Singleton variables: [FilterPredicate] [exec] Warning: /<>/prolog/logol.pl:2342: [exec] Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /<>/prolog/logol.pl:2372: [exec] Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2387: [exec] Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2427: [exec] Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:2427: [exec] Singleton variable in branch: Max [exec] Singleton variable in branch: Z [exec] Warning: /<>/prolog/logol.pl:2462: [exec] Singleton variables: [VarId] [exec] Warning: /<>/prolog/logol.pl:2490: [exec] Singleton variables: [X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2508: [exec] Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2526: [exec] Singleton variables: [ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2568: [exec] Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /<>/prolog/logol.pl:2596: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2600: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2616: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2636: [exec] Singleton variables: [ID] [exec] Warning: /<>/prolog/logol.pl:2639: [exec] Singleton variables: [OPTVAR] [exec] Warning: /<>/prolog/logol.pl:2645: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2693: [exec] Singleton variables: [DATA] [exec] Warning: /<>/prolog/logol.pl:2744: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2747: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2750: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2753: [exec] Singleton variables: [MATCH,ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2758: [exec] Singleton variables: [VAR,VARFOUND] [exec] Warning: /<>/prolog/logol.pl:2761: [exec] Singleton variables: [VAR,VARFOUND] [exec] % autoloading prolog_codewalk:must_be/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading qsave:current_foreign_library/2 from /usr/lib/swi-prolog/library/shlib [exec] % autoloading prolog_debug:backtrace/1 from /usr/lib/swi-prolog/library/prolog_stack [exec] % autoloading process:maplist/3 from /usr/lib/swi-prolog/library/apply [exec] % autoloading process:existence_error/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading process:must_be/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading prolog_codewalk:portray_clause/1 from /usr/lib/swi-prolog/library/listing [exec] % autoloading prolog_codewalk:clause_info/4 from /usr/lib/swi-prolog/library/prolog_clause [exec] % autoloading prolog_codewalk:initialization_layout/4 from /usr/lib/swi-prolog/library/prolog_clause [exec] % autoloading sicstus:read_line_to_codes/2 from /usr/lib/swi-prolog/library/readutil [exec] % autoloading oset:reverse/2 from /usr/lib/swi-prolog/library/lists [exec] % autoloading record:member/2 from /usr/lib/swi-prolog/library/lists [exec] % autoloading error:assertion/1 from /usr/lib/swi-prolog/library/debug [exec] % autoloading prolog_codewalk:clause_name/2 from /usr/lib/swi-prolog/library/prolog_clause [exec] % Found new meta-predicates in iteration 1 (0.142 sec) [exec] % :- meta_predicate logol:callpred(0,*,*). [exec] % :- meta_predicate logol:notpred_pos(*,*,0,*,*,*). [exec] % Restarting analysis ... [exec] % Autoloader: iteration 1 resolved 9 predicates and loaded 14 files in 0.205 seconds. Restarting ... [exec] % Autoloader: loaded 9 files in 2 iterations in 0.269 seconds [exec] % halt [exec] eval `swipl --dump-runtime-variables` [exec] gcc -c -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_GNU_SOURCE -I/usr/include/ncursesw -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o preSwiMain.o preSwiMain.c [exec] gcc -o preanalyse.exe -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/swi-prolog-BP86lU/swi-prolog-7.6.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread preSwiMain.o -L/usr/lib/swi-prolog/lib/i386 -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-9816',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-9816 >> preanalyse.exe [exec] chmod 775 preanalyse.exe [exec] rm preSwiMain.o [exec] rm pltmp-9816 clean: antlr: [java] ANTLR Parser Generator Version 3.5.2 [java] /<>/src/logol.g compile: [mkdir] Created dir: /<>/bin [javac] /<>/build.xml:91: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 62 source files to /<>/bin [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] warning: [options] source value 1.5 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.5 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings create-jar: [jar] Building jar: /<>/lib/LogolExec.jar test_swi: [mkdir] Created dir: /<>/test/tmp [mkdir] Created dir: /<>/test/results [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:1: [exec] Singleton variables: [UnitPath,Lib] [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:1: [exec] Goal (directive) failed: user:(prolog_flag(argv,[_3546,_3568,_3590,_3612,_3634,_3656,_3678,_3700,_3722,_3744]),ensure_loaded(_3656)) [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:5: [exec] Singleton variables: [SicPath,Lib] [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:5: [exec] Goal (directive) failed: user:(prolog_flag(argv,[_3546,_3568,_3590,_3612,_3634,_3656,_3678,_3700,_3722,_3744]),ensure_loaded(_3634)) [exec] Welcome to SWI-Prolog (threaded, 32 bits, version 7.6.2) [exec] SWI-Prolog comes with ABSOLUTELY NO WARRANTY. This is free software. [exec] Please run ?- license. for legal details. [exec] [exec] For online help and background, visit http://www.swi-prolog.org [exec] For built-in help, use ?- help(Topic). or ?- apropos(Word). [exec] [exec] [exec] % halt [junit] Running org.irisa.genouest.logol.test.GrammarTest [junit] Testsuite: org.irisa.genouest.logol.test.GrammarTest [junit] Tests run: 76, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 16.158 sec [junit] Tests run: 76, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 16.158 sec [junit] [junit] ------------- Standard Output --------------- [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.logol.667d425e-62d3-496d-9b09-3346b243c1f8.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.logol.667d425e-62d3-496d-9b09-3346b243c1f8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.logol.667d425e-62d3-496d-9b09-3346b243c1f8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_overlap.logol.efb47816-cece-4306-9856-146156b07b89.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_overlap.logol.efb47816-cece-4306-9856-146156b07b89.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_overlap.logol.efb47816-cece-4306-9856-146156b07b89.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/partialcomplement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.Logol - option offset called with 1000 [junit] INFO org.irisa.genouest.logol.Logol - option start called with 5 [junit] INFO org.irisa.genouest.logol.Logol - option end called with 35 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.433268eb-2180-42f1-9b4d-5fe5aee4cd15.1005-1035.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.433268eb-2180-42f1-9b4d-5fe5aee4cd15.reverse.1005-1035.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/partialcomplement.logol.433268eb-2180-42f1-9b4d-5fe5aee4cd15.5-35-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/partialcomplement.logol.433268eb-2180-42f1-9b4d-5fe5aee4cd15.5-35-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/alphabet.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/alphabet.logol.530400e5-3c64-4584-876a-7c9b53cb173c.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/alphabet.logol.530400e5-3c64-4584-876a-7c9b53cb173c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/alphabet.logol.530400e5-3c64-4584-876a-7c9b53cb173c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/optimal.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.logol.fb23d816-8ff0-495f-9cee-b931a14459e4.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.logol.fb23d816-8ff0-495f-9cee-b931a14459e4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.logol.fb23d816-8ff0-495f-9cee-b931a14459e4.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_startspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_startspacer.logol.4c7b1042-99fd-4a2e-80ff-28f7c47ca4d1.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_startspacer.logol.4c7b1042-99fd-4a2e-80ff-28f7c47ca4d1.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_startspacer.logol.4c7b1042-99fd-4a2e-80ff-28f7c47ca4d1.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/overlap.logol.a094005d-7df9-4bf7-96c7-2f86f7dc4c38.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/overlap.logol.a094005d-7df9-4bf7-96c7-2f86f7dc4c38.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/overlap.logol.a094005d-7df9-4bf7-96c7-2f86f7dc4c38.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/end.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end.logol.b4048fd6-9e0d-4e0b-b30a-955f72b1c67f.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end.logol.b4048fd6-9e0d-4e0b-b30a-955f72b1c67f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end.logol.b4048fd6-9e0d-4e0b-b30a-955f72b1c67f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.logol.c0763f94-e9a6-4768-ad91-e8610e5dd164.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.logol.c0763f94-e9a6-4768-ad91-e8610e5dd164.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.logol.c0763f94-e9a6-4768-ad91-e8610e5dd164.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.logol.19e8fe62-51c8-4526-838d-166e9bb37ddd.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.logol.19e8fe62-51c8-4526-838d-166e9bb37ddd.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.logol.19e8fe62-51c8-4526-838d-166e9bb37ddd.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1799.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/1799.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1799.logol.52bdecbf-cad6-4573-8b9e-67e3155ea539.1-4.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1799.logol.52bdecbf-cad6-4573-8b9e-67e3155ea539.0-4-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1799.logol.52bdecbf-cad6-4573-8b9e-67e3155ea539.0-4-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1800.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/1800.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1800.logol.c1859511-7850-4f9b-a78c-157508cffe7b.1-19.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1800.logol.c1859511-7850-4f9b-a78c-157508cffe7b.0-19-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1800.logol.c1859511-7850-4f9b-a78c-157508cffe7b.0-19-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1806.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1806.logol.4b2b064e-8d87-4f95-a1ee-df4e271b7422.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1806.logol.4b2b064e-8d87-4f95-a1ee-df4e271b7422.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1806.logol.4b2b064e-8d87-4f95-a1ee-df4e271b7422.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2244.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2244.logol.db1643ff-3eae-447e-a8e6-3c7e1cfda394.1-31.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2244.logol.db1643ff-3eae-447e-a8e6-3c7e1cfda394.0-31-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2244.logol.db1643ff-3eae-447e-a8e6-3c7e1cfda394.0-31-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2235.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2235.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2235.logol.f080230f-aed2-4871-aba9-c2d2fb564e12.1-26.xml: 6 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 6 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2235.logol.f080230f-aed2-4871-aba9-c2d2fb564e12.0-26-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2235.logol.f080230f-aed2-4871-aba9-c2d2fb564e12.0-26-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2242.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2242.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2242.logol.87b16236-1359-4052-8765-fea98ffd9de7.1-29.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2242.logol.87b16236-1359-4052-8765-fea98ffd9de7.0-29-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2242.logol.87b16236-1359-4052-8765-fea98ffd9de7.0-29-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2243.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2243.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2243.logol.cb2113b0-95e8-40fc-9ab3-16fdd7f4b833.1-15.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2243.logol.cb2113b0-95e8-40fc-9ab3-16fdd7f4b833.0-15-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2243.logol.cb2113b0-95e8-40fc-9ab3-16fdd7f4b833.0-15-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/fix2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/fix2244.logol.d5aeb690-71cc-4f15-a030-831d69431f4a.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/fix2244.logol.d5aeb690-71cc-4f15-a030-831d69431f4a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/fix2244.logol.d5aeb690-71cc-4f15-a030-831d69431f4a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/halt.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/halt.logol.1c237355-1fb2-4847-b60b-d6c09c3d564f.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/halt.logol.1c237355-1fb2-4847-b60b-d6c09c3d564f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/halt.logol.1c237355-1fb2-4847-b60b-d6c09c3d564f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent2.logol.cb919a74-9661-42e7-bee9-f71165caf3f6.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent2.logol.cb919a74-9661-42e7-bee9-f71165caf3f6.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent2.logol.cb919a74-9661-42e7-bee9-f71165caf3f6.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent3.logol.dc107182-ded8-4428-98ea-9fd0f07021b0.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent3.logol.dc107182-ded8-4428-98ea-9fd0f07021b0.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent3.logol.dc107182-ded8-4428-98ea-9fd0f07021b0.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/external.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external.logol.20ced2fd-76d4-47f6-85ca-a20b5901256c.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external.logol.20ced2fd-76d4-47f6-85ca-a20b5901256c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external.logol.20ced2fd-76d4-47f6-85ca-a20b5901256c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/metacontrol.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/metacontrol.logol.b1e26fb2-efcd-44e4-8435-368bda4c13c5.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/metacontrol.logol.b1e26fb2-efcd-44e4-8435-368bda4c13c5.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/metacontrol.logol.b1e26fb2-efcd-44e4-8435-368bda4c13c5.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/view_begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/view_begin.logol.50cfdbd1-61bb-4ba9-9213-5b9530ce1377.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/view_begin.logol.50cfdbd1-61bb-4ba9-9213-5b9530ce1377.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/view_begin.logol.50cfdbd1-61bb-4ba9-9213-5b9530ce1377.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/begin_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin_postpone.logol.2b38c487-c985-4eae-acf5-ee288bdf3892.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin_postpone.logol.2b38c487-c985-4eae-acf5-ee288bdf3892.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin_postpone.logol.2b38c487-c985-4eae-acf5-ee288bdf3892.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/complement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.70e0fee0-0e5a-4b8f-85e8-5b226af37656.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.70e0fee0-0e5a-4b8f-85e8-5b226af37656.reverse.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complement.logol.70e0fee0-0e5a-4b8f-85e8-5b226af37656.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complement.logol.70e0fee0-0e5a-4b8f-85e8-5b226af37656.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/protein.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/protein.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option protein called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/protein.logol.53373c5a-b9b0-4241-9c44-887639c1074e.1-23.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/protein.logol.53373c5a-b9b0-4241-9c44-887639c1074e.0-23-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/protein.logol.53373c5a-b9b0-4241-9c44-887639c1074e.0-23-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/morphism_var.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism_var.logol.2a4ae25c-3007-4274-bfc6-6e538b22e7d9.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism_var.logol.2a4ae25c-3007-4274-bfc6-6e538b22e7d9.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism_var.logol.2a4ae25c-3007-4274-bfc6-6e538b22e7d9.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.3eeaa6c7-7e94-4eff-9d3a-11fbee48cebc.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.3eeaa6c7-7e94-4eff-9d3a-11fbee48cebc.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.3eeaa6c7-7e94-4eff-9d3a-11fbee48cebc.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/cost_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/cost_postpone.logol.610c061e-d19d-4866-a9b4-3152d8cae594.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/cost_postpone.logol.610c061e-d19d-4866-a9b4-3152d8cae594.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/cost_postpone.logol.610c061e-d19d-4866-a9b4-3152d8cae594.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model.logol.f5f3f510-d6bc-44b2-bb81-7c8548cabe0a.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model.logol.f5f3f510-d6bc-44b2-bb81-7c8548cabe0a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model.logol.f5f3f510-d6bc-44b2-bb81-7c8548cabe0a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewithdistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance.logol.da0c9b5f-0470-4b2a-98db-21d5d2917be6.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance.logol.da0c9b5f-0470-4b2a-98db-21d5d2917be6.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance.logol.da0c9b5f-0470-4b2a-98db-21d5d2917be6.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/optimal.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR1)==>LOGOLVAR2%mydata%:{?"aaaa"},LOGOLVAR3%X1%:{#OPT[2,8]} [junit] mod1(LOGOLVAR4)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/optimal.lgd.564cbf32-7100-4669-8604-411764dd4fa8.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.lgd.564cbf32-7100-4669-8604-411764dd4fa8.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.lgd.564cbf32-7100-4669-8604-411764dd4fa8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.lgd.564cbf32-7100-4669-8604-411764dd4fa8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewitherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherror.logol.9662f141-285d-4a8f-a82e-4ba07da533c9.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherror.logol.9662f141-285d-4a8f-a82e-4ba07da533c9.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherror.logol.9662f141-285d-4a8f-a82e-4ba07da533c9.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/anyspacer.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR4)==>LOGOLVAR5%X1%:{@[0,20]},"ccc" [junit] mod1(LOGOLVAR6)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/anyspacer.lgd.a377c721-55fc-4d1e-8d86-92078569acc5.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.lgd.a377c721-55fc-4d1e-8d86-92078569acc5.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.lgd.a377c721-55fc-4d1e-8d86-92078569acc5.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.lgd.a377c721-55fc-4d1e-8d86-92078569acc5.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/all.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR6)==>"ccc",.*,"ccc" [junit] mod1(LOGOLVAR7)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/all.lgd.e90c469b-4f10-478c-b33d-7c769318a679.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.lgd.e90c469b-4f10-478c-b33d-7c769318a679.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.lgd.e90c469b-4f10-478c-b33d-7c769318a679.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.lgd.e90c469b-4f10-478c-b33d-7c769318a679.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_any.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_any.logol.c4df6966-d23f-4bfc-aa8d-386228a233f9.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_any.logol.c4df6966-d23f-4bfc-aa8d-386228a233f9.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_any.logol.c4df6966-d23f-4bfc-aa8d-386228a233f9.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/comment2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment2.logol.5974b626-8a33-45c8-936e-0ab236356b3e.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment2.logol.5974b626-8a33-45c8-936e-0ab236356b3e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment2.logol.5974b626-8a33-45c8-936e-0ab236356b3e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/negcontent.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR7)==>"aaaa",! "cgta":{#[3,5]} [junit] mod1(LOGOLVAR8)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/negcontent.lgd.b2a40153-cab8-472e-be95-2c39726f5380.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.lgd.b2a40153-cab8-472e-be95-2c39726f5380.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.lgd.b2a40153-cab8-472e-be95-2c39726f5380.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.lgd.b2a40153-cab8-472e-be95-2c39726f5380.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror.logol.6a33ad22-4fca-4c7b-8915-10f12fe3bbd3.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror.logol.6a33ad22-4fca-4c7b-8915-10f12fe3bbd3.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror.logol.6a33ad22-4fca-4c7b-8915-10f12fe3bbd3.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_exact.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_exact.logol.63750cc8-25e1-4c73-bc75-8750a3e049d6.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_exact.logol.63750cc8-25e1-4c73-bc75-8750a3e049d6.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_exact.logol.63750cc8-25e1-4c73-bc75-8750a3e049d6.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/all.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.logol.6b924c56-4603-4790-a096-d076c768a610.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.logol.6b924c56-4603-4790-a096-d076c768a610.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.logol.6b924c56-4603-4790-a096-d076c768a610.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_unknown.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_unknown.logol.d429af82-184e-45cd-9736-ef610ed21358.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_unknown.logol.d429af82-184e-45cd-9736-ef610ed21358.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_unknown.logol.d429af82-184e-45cd-9736-ef610ed21358.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/morphism.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.logol.cfe8077d-c12a-4ee8-a614-353fbc06114f.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.logol.cfe8077d-c12a-4ee8-a614-353fbc06114f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.logol.cfe8077d-c12a-4ee8-a614-353fbc06114f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/or_condition2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition2.logol.b8b6c19e-d0bb-4079-bbec-d818331865f0.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition2.logol.b8b6c19e-d0bb-4079-bbec-d818331865f0.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition2.logol.b8b6c19e-d0bb-4079-bbec-d818331865f0.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/comment.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment.logol.0962745b-ae13-4f14-b930-5d0692a6c244.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment.logol.0962745b-ae13-4f14-b930-5d0692a6c244.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment.logol.0962745b-ae13-4f14-b930-5d0692a6c244.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/variable.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR8)==>"aaa","acgt":{_LOGOLVAR9%R1%},?LOGOLVAR9%R1% [junit] mod1(LOGOLVAR10)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/variable.lgd.de1e173e-1c0d-45ad-be4a-a23c95324dcd.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.lgd.de1e173e-1c0d-45ad-be4a-a23c95324dcd.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.lgd.de1e173e-1c0d-45ad-be4a-a23c95324dcd.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.lgd.de1e173e-1c0d-45ad-be4a-a23c95324dcd.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model2.logol.02751b80-1b42-42ce-97d0-8b17fa18be80.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model2.logol.02751b80-1b42-42ce-97d0-8b17fa18be80.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model2.logol.02751b80-1b42-42ce-97d0-8b17fa18be80.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model3.logol.df7d7518-4856-431d-a202-1083be897f5d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model3.logol.df7d7518-4856-431d-a202-1083be897f5d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model3.logol.df7d7518-4856-431d-a202-1083be897f5d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model4.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model4.logol.751735ed-8e33-4f44-b66f-a0cf6523656d.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model4.logol.751735ed-8e33-4f44-b66f-a0cf6523656d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model4.logol.751735ed-8e33-4f44-b66f-a0cf6523656d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat2.logol.f656fc3c-d212-43ee-a1ad-ed75487980d2.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat2.logol.f656fc3c-d212-43ee-a1ad-ed75487980d2.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat2.logol.f656fc3c-d212-43ee-a1ad-ed75487980d2.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/reverse.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/reverse.logol.17e87a87-cc3a-4e75-90d0-2e788f88d2af.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/reverse.logol.17e87a87-cc3a-4e75-90d0-2e788f88d2af.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/reverse.logol.17e87a87-cc3a-4e75-90d0-2e788f88d2af.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_postcontent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent_witherror.logol.17c8875d-cd2f-4afe-9093-445462bc9381.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent_witherror.logol.17c8875d-cd2f-4afe-9093-445462bc9381.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent_witherror.logol.17c8875d-cd2f-4afe-9093-445462bc9381.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewitherroranddistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherroranddistance.logol.8fd7b7d1-339e-4c9d-9bdf-6bfcf19b1b53.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherroranddistance.logol.8fd7b7d1-339e-4c9d-9bdf-6bfcf19b1b53.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherroranddistance.logol.8fd7b7d1-339e-4c9d-9bdf-6bfcf19b1b53.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/complex.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complex.logol.1669f548-65d6-4940-ae46-8c76ada159cc.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complex.logol.1669f548-65d6-4940-ae46-8c76ada159cc.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complex.logol.1669f548-65d6-4940-ae46-8c76ada159cc.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewithdistance2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance2.logol.d7626b70-1923-4b88-a6c8-4d5c9a2e0eb7.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance2.logol.d7626b70-1923-4b88-a6c8-4d5c9a2e0eb7.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance2.logol.d7626b70-1923-4b88-a6c8-4d5c9a2e0eb7.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_postcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent.logol.d63414ae-8299-4877-88d1-b3f7c7987aa4.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent.logol.d63414ae-8299-4877-88d1-b3f7c7987aa4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent.logol.d63414ae-8299-4877-88d1-b3f7c7987aa4.0-41-all.xml [junit] cgttttgggg [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/multiple_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/multiple_model.logol.a9476bfa-0d9f-4c3e-b20f-4e36c858febf.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/multiple_model.logol.a9476bfa-0d9f-4c3e-b20f-4e36c858febf.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/multiple_model.logol.a9476bfa-0d9f-4c3e-b20f-4e36c858febf.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.8a2de8ca-289b-49c3-8360-beb6787f8c69.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.8a2de8ca-289b-49c3-8360-beb6787f8c69.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.8a2de8ca-289b-49c3-8360-beb6787f8c69.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.8a2de8ca-289b-49c3-8360-beb6787f8c69.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/begin.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR10)==>"aaaa",.*,LOGOLVAR11%X1%:{@[10,12],#[2,8]} [junit] mod1(LOGOLVAR12)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/begin.lgd.22165b3f-ce03-46e4-a8a6-bffbc6408c7f.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.lgd.22165b3f-ce03-46e4-a8a6-bffbc6408c7f.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.lgd.22165b3f-ce03-46e4-a8a6-bffbc6408c7f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.lgd.22165b3f-ce03-46e4-a8a6-bffbc6408c7f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.d13a80cd-b428-46ea-9658-b12936cc22f3.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.d13a80cd-b428-46ea-9658-b12936cc22f3.reverse.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.d13a80cd-b428-46ea-9658-b12936cc22f3.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.d13a80cd-b428-46ea-9658-b12936cc22f3.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/mycost.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/mycost.logol.a743f269-6fa7-4bc8-bde6-4747349f0571.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/mycost.logol.a743f269-6fa7-4bc8-bde6-4747349f0571.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/mycost.logol.a743f269-6fa7-4bc8-bde6-4747349f0571.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/morphism.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR12)==>"aaa",+"wc" "tgca" [junit] mod1(LOGOLVAR13)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/morphism.lgd.1569da8d-c100-4f2a-8d80-a3a42937dc8b.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.lgd.1569da8d-c100-4f2a-8d80-a3a42937dc8b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.lgd.1569da8d-c100-4f2a-8d80-a3a42937dc8b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.lgd.1569da8d-c100-4f2a-8d80-a3a42937dc8b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat.logol.fc1f0260-0ee0-481b-b5a8-7dcf550c64d2.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat.logol.fc1f0260-0ee0-481b-b5a8-7dcf550c64d2.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat.logol.fc1f0260-0ee0-481b-b5a8-7dcf550c64d2.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_witherror2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror2.logol.21109e7d-128d-43d4-aa36-08ed43419038.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror2.logol.21109e7d-128d-43d4-aa36-08ed43419038.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror2.logol.21109e7d-128d-43d4-aa36-08ed43419038.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/external2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external2.logol.6362080f-cda0-4e69-9c8e-bc2f63a4050a.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external2.logol.6362080f-cda0-4e69-9c8e-bc2f63a4050a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external2.logol.6362080f-cda0-4e69-9c8e-bc2f63a4050a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_interspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_interspacer.logol.2c7f5c95-9bc0-4dcb-9a14-3abd826002f0.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_interspacer.logol.2c7f5c95-9bc0-4dcb-9a14-3abd826002f0.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_interspacer.logol.2c7f5c95-9bc0-4dcb-9a14-3abd826002f0.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/notview.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notview.logol.8aae7556-62fa-47b6-be08-5b035037e2cd.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notview.logol.8aae7556-62fa-47b6-be08-5b035037e2cd.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notview.logol.8aae7556-62fa-47b6-be08-5b035037e2cd.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_anyspacer.logol.313a4a51-2b4f-49f5-9532-514bf1e8d5b7.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_anyspacer.logol.313a4a51-2b4f-49f5-9532-514bf1e8d5b7.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_anyspacer.logol.313a4a51-2b4f-49f5-9532-514bf1e8d5b7.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/notrepeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notrepeat.logol.b0a64192-74cf-4838-85f0-2ab6d9e1c33c.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notrepeat.logol.b0a64192-74cf-4838-85f0-2ab6d9e1c33c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notrepeat.logol.b0a64192-74cf-4838-85f0-2ab6d9e1c33c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/or_condition.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition.logol.907ad3d3-0f74-49f8-99da-052ad78be713.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition.logol.907ad3d3-0f74-49f8-99da-052ad78be713.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition.logol.907ad3d3-0f74-49f8-99da-052ad78be713.0-41-all.xml [junit] ------------- ---------------- --------------- [junit] ------------- Standard Error ----------------- [junit] log4j:ERROR setFile(null,true) call failed. [junit] java.io.FileNotFoundException: /var/log/logol/logol.log (No such file or directory) [junit] at java.io.FileOutputStream.open0(Native Method) [junit] at java.io.FileOutputStream.open(FileOutputStream.java:270) [junit] at java.io.FileOutputStream.(FileOutputStream.java:213) [junit] at java.io.FileOutputStream.(FileOutputStream.java:133) [junit] at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) [junit] at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) [junit] at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) [junit] at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) [junit] at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) [junit] at org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) [junit] at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) [junit] at org.apache.log4j.LogManager.(LogManager.java:127) [junit] at org.apache.log4j.Logger.getLogger(Logger.java:117) [junit] at org.irisa.genouest.logol.test.GrammarTest.(Unknown Source) [junit] at java.lang.Class.forName0(Native Method) [junit] at java.lang.Class.forName(Class.java:264) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:380) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:1182) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:1033) [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] ------------- ---------------- --------------- [junit] Testcase: testAmbiguous(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch2(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch3(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is BUILD SUCCESSFUL Total time: 24 seconds mkdir -p test/tmp test/results ant -f build.xml doc Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. doc: [exec] This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) [exec] restricted \write18 enabled. [exec] entering extended mode [exec] (./logol.tex [exec] LaTeX2e <2017-04-15> [exec] Babel <3.15> and hyphenation patterns for 3 language(s) loaded. [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls [exec] Document Class: article 2014/09/29 v1.4h Standard LaTeX document class [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) [exec] (/usr/share/texmf/tex/latex/swi-prolog/pldoc.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) [exec] (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) [exec] (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) [exec] [exec] Package hyperref Message: Driver: hpdftex. 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[exec] [18] (./logol.aux) [exec] [exec] Package rerunfilecheck Warning: File `logol.out' has changed. [exec] (rerunfilecheck) Rerun to get outlines right [exec] (rerunfilecheck) or use package `bookmark'. [exec] [exec] [exec] LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. [exec] [exec] ) [exec] (see the transcript file for additional information){/usr/share/texlive/texmf-d [exec] ist/fonts/enc/dvips/base/8r.enc} [exec] Output written on logol.pdf (18 pages, 96045 bytes). [exec] Transcript written on logol.log. BUILD SUCCESSFUL Total time: 3 seconds make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rm -f debian/logol/usr/share/logol/prolog/*.c rm -f debian/logol/usr/share/logol/prolog/*.exe rm -f debian/logol/usr/share/logol/prolog/logol.properties rm -f debian/logol/usr/share/logol/tools/*.keep_old_script if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' rm -f test/tmp/* rm -f test/results/* dh_installexamples make[1]: Leaving directory '/<>' dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a debian/rules override_dh_strip make[1]: Entering directory '/<>' dh_strip -Xlogol.exe -Xpreanalyse.exe make[1]: Leaving directory '/<>' dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/logol-bin/usr/lib/logol/preanalyse.exe debian/logol-bin/usr/lib/logol/logol.exe were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 pkgstriptranslations: processing logol-bin (in debian/logol-bin); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/logol-bin/DEBIAN/control, package logol-bin, directory debian/logol-bin pkgstripfiles: Truncating usr/share/doc/logol-bin/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package logol-bin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'logol-bin' in '../logol-bin_1.7.6-1_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../logol_1.7.6-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build logol-1.7.6 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171207-2311 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ logol_1.7.6-1_i386.changes: --------------------------- Format: 1.8 Date: Thu, 07 Dec 2017 16:51:33 +0000 Source: logol Binary: logol logol-bin Architecture: i386 Version: 1.7.6-1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Olivier Sallou Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Changes: logol (1.7.6-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 356a87cecb23d433860c0335fda9091d2e384153 147896 logol-bin_1.7.6-1_i386.deb 058041f7daa1cf834876d08a6ee01b1a4e4a856a 12431 logol_1.7.6-1_i386.buildinfo Checksums-Sha256: e2a6911d2043872212816b591e0daeaaea3726cb078a30bc847fe2c4521b8883 147896 logol-bin_1.7.6-1_i386.deb fffea548619e4edf83903648e2287d89aeeb2fdd76aad6e46d3eedf4e984ff13 12431 logol_1.7.6-1_i386.buildinfo Files: 705515cb03f8ad07624f2f85d9d1da36 147896 science optional logol-bin_1.7.6-1_i386.deb 97fb96352d4d1830ea6911e610bebe8d 12431 science optional logol_1.7.6-1_i386.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ logol-bin_1.7.6-1_i386.deb -------------------------- new debian package, version 2.0. size 147896 bytes: control archive=924 bytes. 854 bytes, 19 lines control 339 bytes, 5 lines md5sums Package: logol-bin Source: logol Version: 1.7.6-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 963 Depends: libc6 (>= 2.4), swi-prolog-nox (>= 7.6.2+dfsg~), swi-prolog-nox (<< 7.6.2+dfsg.0~), swi-prolog (>= 6.4.1-3), libncursesw5 Section: science Priority: optional Homepage: http://logol.genouest.org Description: Pattern matching tool using Logol language This package contains the Prolog binaries used by Logol to parse the sequence and match the grammar. . Logol is a pattern matching tool using the Logol language. It searches with a specific grammar a pattern in small or large sequence (dna, rna, protein). It provides complete result matching with the original grammar in the results. drwxr-xr-x root/root 0 2017-12-07 16:51 ./ drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/ drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/lib/logol/ -rwxr-xr-x root/root 484517 2017-12-07 16:51 ./usr/lib/logol/logol.exe -rwxr-xr-x root/root 480289 2017-12-07 16:51 ./usr/lib/logol/preanalyse.exe drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/share/doc/logol-bin/ -rw-r--r-- root/root 998 2017-12-07 16:51 ./usr/share/doc/logol-bin/changelog.Debian.gz -rw-r--r-- root/root 1354 2017-12-07 16:51 ./usr/share/doc/logol-bin/copyright drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 222 2017-12-07 16:51 ./usr/share/lintian/overrides/logol-bin drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/share/logol/ drwxr-xr-x root/root 0 2017-12-07 16:51 ./usr/share/logol/prolog/ lrwxrwxrwx root/root 0 2017-12-07 16:51 ./usr/share/logol/prolog/logol.exe -> ../../../lib/logol/logol.exe lrwxrwxrwx root/root 0 2017-12-07 16:51 ./usr/share/logol/prolog/preanalyse.exe -> ../../../lib/logol/preanalyse.exe +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 8984 Build-Time: 36 Distribution: bionic-proposed Host Architecture: i386 Install-Time: 97 Job: logol_1.7.6-1.dsc Machine Architecture: amd64 Package: logol Package-Time: 133 Source-Version: 1.7.6-1 Space: 8984 Status: successful Version: 1.7.6-1 -------------------------------------------------------------------------------- Finished at 20171207-2311 Build needed 00:02:13, 8984k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13829477 Scanning for processes to kill in build PACKAGEBUILD-13829477 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13829477 Stopping target for build PACKAGEBUILD-13829477 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13829477 Removing build PACKAGEBUILD-13829477