https://launchpad.net/ubuntu/+source/logol/1.7.9-2/+build/19107115 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-054 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 4 Apr 20:00:47 ntpdate[498225]: adjust time server 10.211.37.1 offset -0.001169 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19107115 --image-type chroot /home/buildd/filecache-default/88ad86cb2b525f1abddded96eadf8014548f7845 Creating target for build PACKAGEBUILD-19107115 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19107115 Starting target for build PACKAGEBUILD-19107115 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19107115 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-19107115 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19107115 Updating target for build PACKAGEBUILD-19107115 Ign:1 http://archive-team.internal/bootstrap/riscv64 focal InRelease Get:2 http://archive-team.internal/bootstrap/riscv64 focal Release [757 B] Get:3 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Ign:4 http://archive-team.internal/bootstrap/riscv64 focal Release.gpg Get:5 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 Packages [746 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed InRelease [265 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 Packages [757 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main Translation-en [501 kB] Get:9 http://ftpmaster.internal/ubuntu focal/universe riscv64 Packages [5750 kB] Get:10 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5127 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 Packages [24.1 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [23.7 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/restricted Translation-en [860 B] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 Packages [149 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [116 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/multiverse riscv64 Packages [1324 B] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/multiverse Translation-en [9088 B] Fetched 13.7 MB in 28s (483 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: coreutils gcc-8-base libc-bin libc-dev-bin libc6 libc6-dev liblocale-gettext-perl libperl5.30 libtext-charwidth-perl libtext-iconv-perl perl-base 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.6 MB of archives. After this operation, 6144 B of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main riscv64 coreutils riscv64 8.30-3ubuntu2 [1158 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 perl-base riscv64 5.30.0-9build1 [1419 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libc6-dev riscv64 2.31-0ubuntu7 [3659 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libc-dev-bin riscv64 2.31-0ubuntu7 [62.5 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libc6 riscv64 2.31-0ubuntu7 [2272 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libc-bin riscv64 2.31-0ubuntu7 [505 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 liblocale-gettext-perl riscv64 1.07-4 [16.5 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-charwidth-perl riscv64 0.04-10 [9460 B] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-iconv-perl riscv64 1.7-7 [13.2 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 gcc-8-base riscv64 8.4.0-3ubuntu2 [18.4 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libperl5.30 riscv64 5.30.0-9build1 [3422 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.6 MB in 3s (4253 kB/s) (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_riscv64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu2) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../perl-base_5.30.0-9build1_riscv64.deb ... Unpacking perl-base (5.30.0-9build1) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-9build1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc-dev-bin_2.31-0ubuntu7_riscv64.deb ... Unpacking libc-dev-bin (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc6_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Setting up libc6:riscv64 (2.31-0ubuntu7) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-0ubuntu7_riscv64.deb ... Unpacking libc-bin (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Setting up libc-bin (2.31-0ubuntu7) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-4) over (1.07-4) ... Preparing to unpack .../libtext-charwidth-perl_0.04-10_riscv64.deb ... Unpacking libtext-charwidth-perl (0.04-10) over (0.04-10) ... Preparing to unpack .../libtext-iconv-perl_1.7-7_riscv64.deb ... Unpacking libtext-iconv-perl (1.7-7) over (1.7-7) ... Preparing to unpack .../gcc-8-base_8.4.0-3ubuntu2_riscv64.deb ... Unpacking gcc-8-base:riscv64 (8.4.0-3ubuntu2) over (8.4.0-3ubuntu1) ... Preparing to unpack .../libperl5.30_5.30.0-9build1_riscv64.deb ... Unpacking libperl5.30:riscv64 (5.30.0-9build1) over (5.30.0-9build1) ... Setting up libtext-iconv-perl (1.7-7) ... Setting up libtext-charwidth-perl (0.04-10) ... Setting up gcc-8-base:riscv64 (8.4.0-3ubuntu2) ... Setting up libperl5.30:riscv64 (5.30.0-9build1) ... Setting up libc-dev-bin (2.31-0ubuntu7) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libc6-dev:riscv64 (2.31-0ubuntu7) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19107115 riscv64 focal -c chroot:build-PACKAGEBUILD-19107115 --arch=riscv64 --dist=focal --nolog logol_1.7.9-2.dsc Initiating build PACKAGEBUILD-19107115 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-054 +==============================================================================+ | logol 1.7.9-2 (riscv64) Sat, 04 Apr 2020 20:07:15 +0000 | +==============================================================================+ Package: logol Version: 1.7.9-2 Source Version: 1.7.9-2 Distribution: focal Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19107115/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/logol-5Mh2wT/resolver-a9Rdxg' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- logol_1.7.9-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/logol-5Mh2wT/logol-1.7.9' with '<>' I: NOTICE: Log filtering will replace 'build/logol-5Mh2wT' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), default-jdk, ant, ruby, gawk, swi-prolog, libbiojava-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), default-jdk, ant, ruby, gawk, swi-prolog, libbiojava-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [960 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [524 B] Get:5 copy:/<>/apt_archive ./ Packages [609 B] Fetched 2093 B in 1s (3990 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: ant ant-optional antlr3 autoconf automake autopoint autotools-dev bsdmainutils ca-certificates-java cassiopee chrpath debhelper default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gawk gettext gettext-base groff-base intltool-debian java-common junit4 libactivation-java libantlr3-runtime-java libapache-pom-java libarchive-zip-perl libarchive13 libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.7-java libboost-serialization1.71.0 libbsd-dev libbsd0 libbytecode-java libcairo2 libcassie1v5 libcommons-cli-java libcommons-collections3-java libcommons-configuration-java libcommons-dbcp-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcommons-pool-java libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit-dev libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgflags2.2 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgoogle-glog0v5 libgraphite2-3 libgssapi-krb5-2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhsqldb-java libice6 libicu66 libjaxp1.3-java libjpeg-turbo8 libjpeg8 libjs-jquery libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 liblog4j1.2-java libmagic-mgc libmagic1 libmail-java libmpdec2 libncurses-dev libncurses6 libnspr4 libnss3 libossp-uuid16 libpaper-utils libpaper1 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline-dev libruby2.7 libsensors-config libsensors5 libservlet-api-java libsigsegv2 libsm6 libstringtemplate4-java libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtool libuchardet0 libx11-6 libx11-data libx11-xcb1 libxalan2-java libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyaml-0-2 libzzip-0-13 m4 man-db mime-support openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless po-debconf preview-latex-style python3 python3-minimal python3.8 python3.8-minimal rake ruby ruby-cassiopee ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-text ruby-xmlrpc ruby2.7 rubygems-integration swi-prolog swi-prolog-nox swi-prolog-x t1utils tex-common texlive texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic tzdata ucf x11-common xdg-utils Suggested packages: ant-doc antlr javacc junit jython libbcel-java libbsf-java libcommons-net-java libjdepend-java libjsch-java liboro-java libregexp-java libxz-java autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libasound2-plugins alsa-utils java-virtual-machine libjgrapht-java libbiojava-java-doc libcommons-collections3-java-doc libcommons-beanutils-java libcommons-codec-java libcommons-digester-java libcommons-jexl2-java libcommons-jxpath-java libcommons-vfs-java libcommons-dbcp-java-doc libgeronimo-jta-1.1-spec-java libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common gmp-doc libgmp10-doc libmpfr-dev krb5-doc krb5-user libhsqldb-java-doc liblcms2-utils liblog4j1.2-java-doc libmail-java-doc ncurses-doc uuid pcscd readline-doc lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk libxalan2-java-doc libxsltc-java libxerces2-java-doc libxml-commons-resolver1.1-java-doc m4-doc apparmor less www-browser openjdk-11-demo openjdk-11-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support ri ruby-dev bundler elpa-ediprolog ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex Recommended packages: libstringtemplate-java curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libltdl-dev libxt-dev libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl zip fonts-lato lmodern dvisvgm tex-gyre tipa tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ant ant-optional antlr3 autoconf automake autopoint autotools-dev bsdmainutils ca-certificates-java cassiopee chrpath debhelper default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gawk gettext gettext-base groff-base intltool-debian java-common junit4 libactivation-java libantlr3-runtime-java libapache-pom-java libarchive-zip-perl libarchive13 libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.7-java libboost-serialization1.71.0 libbsd-dev libbsd0 libbytecode-java libcairo2 libcassie1v5 libcommons-cli-java libcommons-collections3-java libcommons-configuration-java libcommons-dbcp-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcommons-pool-java libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit-dev libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgflags2.2 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgoogle-glog0v5 libgraphite2-3 libgssapi-krb5-2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhsqldb-java libice6 libicu66 libjaxp1.3-java libjpeg-turbo8 libjpeg8 libjs-jquery libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 liblog4j1.2-java libmagic-mgc libmagic1 libmail-java libmpdec2 libncurses-dev libncurses6 libnspr4 libnss3 libossp-uuid16 libpaper-utils libpaper1 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline-dev libruby2.7 libsensors-config libsensors5 libservlet-api-java libsigsegv2 libsm6 libstringtemplate4-java libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtool libuchardet0 libx11-6 libx11-data libx11-xcb1 libxalan2-java libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyaml-0-2 libzzip-0-13 m4 man-db mime-support openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless po-debconf preview-latex-style python3 python3-minimal python3.8 python3.8-minimal rake ruby ruby-cassiopee ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-text ruby-xmlrpc ruby2.7 rubygems-integration sbuild-build-depends-main-dummy swi-prolog swi-prolog-nox swi-prolog-x t1utils tex-common texlive texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic tzdata ucf x11-common xdg-utils 0 upgraded, 214 newly installed, 0 to remove and 0 not upgraded. Need to get 342 MB of archives. After this operation, 886 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1044 B] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-minimal riscv64 3.8.2-1ubuntu1 [698 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 openjdk-11-jre-headless riscv64 11.0.7+9-1ubuntu1 [31.1 MB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 libexpat1 riscv64 2.2.9-1build1 [68.8 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8-minimal riscv64 3.8.2-1ubuntu1 [1447 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 python3-minimal riscv64 3.8.2-0ubuntu2 [23.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 mime-support all 3.64ubuntu1 [30.6 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 libmpdec2 riscv64 2.4.2-3 [79.2 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-stdlib riscv64 3.8.2-1ubuntu1 [1557 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8 riscv64 3.8.2-1ubuntu1 [364 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libpython3-stdlib riscv64 3.8.2-0ubuntu2 [7072 B] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 python3 riscv64 3.8.2-0ubuntu2 [47.6 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 groff-base riscv64 1.22.4-4build1 [816 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 gawk riscv64 1:5.0.1+dfsg-1 [381 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 ucf all 3.0038+nmu1 [51.6 kB] Get:22 http://ftpmaster.internal/ubuntu focal/universe riscv64 tex-common all 6.13 [32.7 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main riscv64 libncurses6 riscv64 6.2-0ubuntu2 [86.2 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main riscv64 libdbus-1-3 riscv64 1.12.16-2ubuntu2 [161 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main riscv64 libglib2.0-0 riscv64 2.64.1-1 [1122 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main riscv64 tzdata all 2019c-3ubuntu1 [294 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main riscv64 libxml2 riscv64 2.9.10+dfsg-4build1 [558 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main riscv64 libyaml-0-2 riscv64 0.2.2-1 [45.7 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:35 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 libboost-serialization1.71.0 riscv64 1.71.0-6ubuntu5+riscv64.1 [298 kB] Get:36 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 openjdk-11-jre riscv64 11.0.7+9-1ubuntu1 [31.9 kB] Get:37 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 openjdk-11-jdk-headless riscv64 11.0.7+9-1ubuntu1 [145 MB] Get:38 http://ftpmaster.internal/ubuntu focal/main riscv64 libdrm-common all 2.4.100-4 [5340 B] Get:39 http://ftpmaster.internal/ubuntu focal/main riscv64 libdrm2 riscv64 2.4.100-4 [29.5 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main riscv64 libedit2 riscv64 3.1-20191231-1 [74.8 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main riscv64 libkrb5support0 riscv64 1.17-6ubuntu4 [28.3 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main riscv64 libk5crypto3 riscv64 1.17-6ubuntu4 [91.8 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main riscv64 libkeyutils1 riscv64 1.6-6ubuntu1 [9316 B] Get:44 http://ftpmaster.internal/ubuntu focal/main riscv64 libkrb5-3 riscv64 1.17-6ubuntu4 [295 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main riscv64 libgssapi-krb5-2 riscv64 1.17-6ubuntu4 [107 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main riscv64 libxau6 riscv64 1:1.0.9-0ubuntu1 [6788 B] Get:47 http://ftpmaster.internal/ubuntu focal/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu1 [9952 B] Get:48 http://ftpmaster.internal/ubuntu focal/main riscv64 libxcb1 riscv64 1.14-2 [37.9 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main riscv64 libx11-data all 2:1.6.9-2ubuntu1 [113 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main riscv64 libx11-6 riscv64 2:1.6.9-2ubuntu1 [537 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main riscv64 libxext6 riscv64 2:1.3.4-0ubuntu1 [25.6 kB] Get:52 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libnspr4 riscv64 2:4.25-1 [91.0 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main riscv64 libnss3 riscv64 2:3.49.1-1ubuntu1 [1041 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main riscv64 ca-certificates-java all 20190405ubuntu1 [12.2 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main riscv64 java-common all 0.72 [6816 B] Get:56 http://ftpmaster.internal/ubuntu focal/main riscv64 libavahi-common-data riscv64 0.7-4ubuntu6 [21.3 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main riscv64 libavahi-common3 riscv64 0.7-4ubuntu6 [18.3 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main riscv64 libavahi-client3 riscv64 0.7-4ubuntu6 [22.2 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main riscv64 libcups2 riscv64 2.3.1-9ubuntu1 [210 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main riscv64 liblcms2-2 riscv64 2.9-4 [127 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main riscv64 libjpeg-turbo8 riscv64 2.0.3-0ubuntu1 [101 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main riscv64 libjpeg8 riscv64 8c-2ubuntu8 [2224 B] Get:63 http://ftpmaster.internal/ubuntu focal/main riscv64 libfreetype6 riscv64 2.10.1-2 [313 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main riscv64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main riscv64 fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main riscv64 libfontconfig1 riscv64 2.13.1-2ubuntu2 [104 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main riscv64 libasound2-data all 1.2.2-2.1 [19.0 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main riscv64 libasound2 riscv64 1.2.2-2.1 [289 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main riscv64 libpcsclite1 riscv64 1.8.26-3 [19.5 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main riscv64 libxi6 riscv64 2:1.7.10-0ubuntu1 [27.2 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main riscv64 libxrender1 riscv64 1:0.9.10-1 [16.8 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main riscv64 x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main riscv64 libxtst6 riscv64 2:1.2.3-1 [11.9 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main riscv64 default-jre-headless riscv64 2:1.11-72 [3200 B] Get:75 http://ftpmaster.internal/ubuntu focal/universe riscv64 ant all 1.10.7-1 [2100 kB] Get:76 http://ftpmaster.internal/ubuntu focal/universe riscv64 ant-optional all 1.10.7-1 [368 kB] Get:77 http://ftpmaster.internal/ubuntu focal/universe riscv64 libantlr3-runtime-java all 3.5.2-9 [164 kB] Get:78 http://ftpmaster.internal/ubuntu focal/universe riscv64 libstringtemplate4-java all 4.0.8-2 [225 kB] Get:79 http://ftpmaster.internal/ubuntu focal/universe riscv64 antlr3 all 3.5.2-9 [1138 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:85 http://ftpmaster.internal/ubuntu focal/universe riscv64 libgflags2.2 riscv64 2.2.2-1build1 [71.8 kB] Get:86 http://ftpmaster.internal/ubuntu focal/universe riscv64 libgoogle-glog0v5 riscv64 0.4.0-1build1 [49.1 kB] Get:87 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcassie1v5 riscv64 1.0.9-2build1 [37.9 kB] Get:88 http://ftpmaster.internal/ubuntu focal/universe riscv64 cassiopee riscv64 1.0.9-2build1 [15.5 kB] Get:89 http://ftpmaster.internal/ubuntu focal/universe riscv64 chrpath riscv64 0.16-2 [12.9 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main riscv64 libtool all 2.4.6-13 [161 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main riscv64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:95 http://ftpmaster.internal/ubuntu focal/main riscv64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:97 http://ftpmaster.internal/ubuntu focal/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main riscv64 po-debconf all 1.0.21 [233 kB] Get:102 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 debhelper all 12.10ubuntu1 [877 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main riscv64 libglvnd0 riscv64 1.3.1-1 [49.8 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main riscv64 libglapi-mesa riscv64 20.0.2-1ubuntu1 [31.7 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main riscv64 libx11-xcb1 riscv64 2:1.6.9-2ubuntu1 [8812 B] Get:106 http://ftpmaster.internal/ubuntu focal/main riscv64 libxcb-dri2-0 riscv64 1.14-2 [6124 B] Get:107 http://ftpmaster.internal/ubuntu focal/main riscv64 libxcb-dri3-0 riscv64 1.14-2 [5852 B] Get:108 http://ftpmaster.internal/ubuntu focal/main riscv64 libxcb-glx0 riscv64 1.14-2 [18.9 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main riscv64 libxcb-present0 riscv64 1.14-2 [5044 B] Get:110 http://ftpmaster.internal/ubuntu focal/main riscv64 libxcb-sync1 riscv64 1.14-2 [7588 B] Get:111 http://ftpmaster.internal/ubuntu focal/main riscv64 libxdamage1 riscv64 1:1.1.5-1 [6280 B] Get:112 http://ftpmaster.internal/ubuntu focal/main riscv64 libxfixes3 riscv64 1:5.0.3-1 [9712 B] Get:113 http://ftpmaster.internal/ubuntu focal/main riscv64 libxshmfence1 riscv64 1.3-1 [4584 B] Get:114 http://ftpmaster.internal/ubuntu focal/main riscv64 libxxf86vm1 riscv64 1:1.1.4-1build1 [9488 B] Get:115 http://ftpmaster.internal/ubuntu focal/main riscv64 libdrm-nouveau2 riscv64 2.4.100-4 [14.2 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main riscv64 libdrm-radeon1 riscv64 2.4.100-4 [19.2 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main riscv64 libsensors-config all 1:3.6.0-2ubuntu1 [6092 B] Get:118 http://ftpmaster.internal/ubuntu focal/main riscv64 libsensors5 riscv64 1:3.6.0-2ubuntu1 [24.4 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main riscv64 libgl1-mesa-dri riscv64 20.0.2-1ubuntu1 [4908 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main riscv64 libglx-mesa0 riscv64 20.0.2-1ubuntu1 [133 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main riscv64 libglx0 riscv64 1.3.1-1 [24.2 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main riscv64 libgl1 riscv64 1.3.1-1 [98.9 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main riscv64 libgif7 riscv64 5.1.9-1 [30.5 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main riscv64 default-jre riscv64 2:1.11-72 [1084 B] Get:125 http://ftpmaster.internal/ubuntu focal/main riscv64 default-jdk-headless riscv64 2:1.11-72 [1140 B] Get:126 http://ftpmaster.internal/ubuntu focal/main riscv64 default-jdk riscv64 2:1.11-72 [1096 B] Get:127 http://ftpmaster.internal/ubuntu focal/universe riscv64 fonts-lmodern all 2.004.5-6 [4532 kB] Get:128 http://ftpmaster.internal/ubuntu focal/universe riscv64 libhamcrest-java all 1.3-9 [386 kB] Get:129 http://ftpmaster.internal/ubuntu focal/universe riscv64 junit4 all 4.12-8 [290 kB] Get:130 http://ftpmaster.internal/ubuntu focal/universe riscv64 libactivation-java all 1.2.0-2 [84.7 kB] Get:131 http://ftpmaster.internal/ubuntu focal/universe riscv64 libapache-pom-java all 18-1 [4720 B] Get:132 http://ftpmaster.internal/ubuntu focal/main riscv64 libarchive13 riscv64 3.4.0-1ubuntu2 [303 kB] Get:133 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcommons-pool-java all 1.6-3 [104 kB] Get:134 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcommons-collections3-java all 3.2.2-2 [525 kB] Get:135 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcommons-dbcp-java all 1.4-6 [156 kB] Get:136 http://ftpmaster.internal/ubuntu focal/universe riscv64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get:137 http://ftpmaster.internal/ubuntu focal/universe riscv64 libhsqldb-java all 2.5.0-1build2 [1524 kB] Get:138 http://ftpmaster.internal/ubuntu focal/universe riscv64 libbytecode-java all 0.92.svn.20090106-2 [89.1 kB] Get:139 http://ftpmaster.internal/ubuntu focal/universe riscv64 libbiojava1.7-java all 1:1.7.1-8 [3274 kB] Get:140 http://ftpmaster.internal/ubuntu focal/universe riscv64 libbiojava-java all 1:1.7.1-8 [46.3 kB] Get:141 http://ftpmaster.internal/ubuntu focal/main riscv64 libbsd-dev riscv64 0.10.0-1 [203 kB] Get:142 http://ftpmaster.internal/ubuntu focal/main riscv64 libpixman-1-0 riscv64 0.38.4-0ubuntu1 [146 kB] Get:143 http://ftpmaster.internal/ubuntu focal/main riscv64 libxcb-render0 riscv64 1.14-2 [12.8 kB] Get:144 http://ftpmaster.internal/ubuntu focal/main riscv64 libxcb-shm0 riscv64 1.14-2 [5032 B] Get:145 http://ftpmaster.internal/ubuntu focal/main riscv64 libcairo2 riscv64 1.16.0-4ubuntu1 [531 kB] Get:146 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcommons-cli-java all 1.4-1 [53.8 kB] Get:147 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcommons-parent-java all 43-1 [10.8 kB] Get:148 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcommons-lang-java all 2.6-9 [272 kB] Get:149 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcommons-logging-java all 1.2-2 [60.3 kB] Get:150 http://ftpmaster.internal/ubuntu focal/universe riscv64 libcommons-configuration-java all 1.10-5 [328 kB] Get:151 http://ftpmaster.internal/ubuntu focal/main riscv64 libncurses-dev riscv64 6.2-0ubuntu2 [696 kB] Get:152 http://ftpmaster.internal/ubuntu focal/main riscv64 libedit-dev riscv64 3.1-20191231-1 [177 kB] Get:153 http://ftpmaster.internal/ubuntu focal/main riscv64 libgmpxx4ldbl riscv64 2:6.2.0+dfsg-4 [8712 B] Get:154 http://ftpmaster.internal/ubuntu focal/main riscv64 libgmp-dev riscv64 2:6.2.0+dfsg-4 [693 kB] Get:155 http://ftpmaster.internal/ubuntu focal/main riscv64 libgraphite2-3 riscv64 1.3.13-11build1 [70.4 kB] Get:156 http://ftpmaster.internal/ubuntu focal/main riscv64 libice6 riscv64 2:1.0.10-0ubuntu1 [34.7 kB] Get:157 http://ftpmaster.internal/ubuntu focal/universe riscv64 libjaxp1.3-java all 1.3.05-5 [226 kB] Get:158 http://ftpmaster.internal/ubuntu focal/main riscv64 libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:159 http://ftpmaster.internal/ubuntu focal/main riscv64 libkpathsea6 riscv64 2019.20190605.51237-3build2 [52.4 kB] Get:160 http://ftpmaster.internal/ubuntu focal/universe riscv64 liblog4j1.2-java all 1.2.17-9 [435 kB] Get:161 http://ftpmaster.internal/ubuntu focal/universe riscv64 libmail-java all 1.6.2-1 [680 kB] Get:162 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 libossp-uuid16 riscv64 1.6.2-1.5build7 [32.6 kB] Get:163 http://ftpmaster.internal/ubuntu focal/main riscv64 libpaper1 riscv64 1.1.28 [12.2 kB] Get:164 http://ftpmaster.internal/ubuntu focal/main riscv64 libpaper-utils riscv64 1.1.28 [8044 B] Get:165 http://ftpmaster.internal/ubuntu focal/main riscv64 libptexenc1 riscv64 2019.20190605.51237-3build2 [33.5 kB] Get:166 http://ftpmaster.internal/ubuntu focal/main riscv64 libreadline-dev riscv64 8.0-4 [262 kB] Get:167 http://ftpmaster.internal/ubuntu focal/main riscv64 rubygems-integration all 1.16 [5092 B] Get:168 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 ruby riscv64 1:2.7 [5380 B] Get:169 http://ftpmaster.internal/ubuntu focal/main riscv64 rake all 13.0.1-2 [45.2 kB] Get:170 http://ftpmaster.internal/ubuntu focal/main riscv64 ruby-did-you-mean all 1.2.1-1 [9828 B] Get:171 http://ftpmaster.internal/ubuntu focal/main riscv64 ruby-minitest all 5.13.0-1 [40.9 kB] Get:172 http://ftpmaster.internal/ubuntu focal/main riscv64 ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:173 http://ftpmaster.internal/ubuntu focal/main riscv64 ruby-power-assert all 1.1.7-1 [11.4 kB] Get:174 http://ftpmaster.internal/ubuntu focal/main riscv64 ruby-test-unit all 3.3.4-1 [73.1 kB] Get:175 http://ftpmaster.internal/ubuntu focal/main riscv64 ruby-xmlrpc all 0.3.0-2 [23.8 kB] Get:176 http://ftpmaster.internal/ubuntu focal/main riscv64 libsm6 riscv64 2:1.2.3-1 [14.6 kB] Get:177 http://ftpmaster.internal/ubuntu focal/main riscv64 libsynctex2 riscv64 2019.20190605.51237-3build2 [49.1 kB] Get:178 http://ftpmaster.internal/ubuntu focal/universe riscv64 libteckit0 riscv64 2.5.8+ds2-5ubuntu2 [259 kB] Get:179 http://ftpmaster.internal/ubuntu focal/main riscv64 libtexlua53 riscv64 2019.20190605.51237-3build2 [91.4 kB] Get:180 http://ftpmaster.internal/ubuntu focal/universe riscv64 libxml-commons-external-java all 1.4.01-3 [240 kB] Get:181 http://ftpmaster.internal/ubuntu focal/universe riscv64 libxml-commons-resolver1.1-java all 1.2-9 [91.1 kB] Get:182 http://ftpmaster.internal/ubuntu focal/universe riscv64 libxerces2-java all 2.12.1-1 [1437 kB] Get:183 http://ftpmaster.internal/ubuntu focal/universe riscv64 libxalan2-java all 2.7.2-2 [3377 kB] Get:184 http://ftpmaster.internal/ubuntu focal/main riscv64 libxt6 riscv64 1:1.1.5-1 [136 kB] Get:185 http://ftpmaster.internal/ubuntu focal/main riscv64 libxmu6 riscv64 2:1.1.3-0ubuntu1 [40.2 kB] Get:186 http://ftpmaster.internal/ubuntu focal/main riscv64 libxpm4 riscv64 1:3.5.12-1 [31.5 kB] Get:187 http://ftpmaster.internal/ubuntu focal/main riscv64 libxaw7 riscv64 2:1.0.13-1 [147 kB] Get:188 http://ftpmaster.internal/ubuntu focal/main riscv64 libxft2 riscv64 2.3.3-0ubuntu1 [34.4 kB] Get:189 http://ftpmaster.internal/ubuntu focal/main riscv64 libxinerama1 riscv64 2:1.1.4-2 [6328 B] Get:190 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 libzzip-0-13 riscv64 0.13.62-3.2ubuntu1 [22.8 kB] Get:191 http://ftpmaster.internal/ubuntu focal/universe riscv64 preview-latex-style all 11.91-2ubuntu2 [184 kB] Get:192 http://ftpmaster.internal/ubuntu focal/universe riscv64 ruby-text all 1.3.0-1 [13.1 kB] Get:193 http://ftpmaster.internal/ubuntu focal/universe riscv64 ruby-cassiopee all 0.1.13-1 [11.0 kB] Get:194 http://ftpmaster.internal/ubuntu focal/universe riscv64 swi-prolog-nox riscv64 7.6.4+dfsg-2ubuntu2 [4242 kB] Get:195 http://ftpmaster.internal/ubuntu focal/universe riscv64 swi-prolog-x riscv64 7.6.4+dfsg-2ubuntu2 [1890 kB] Get:196 http://ftpmaster.internal/ubuntu focal/universe riscv64 swi-prolog riscv64 7.6.4+dfsg-2ubuntu2 [15.3 kB] Get:197 http://ftpmaster.internal/ubuntu focal/main riscv64 t1utils riscv64 1.41-3 [51.1 kB] Get:198 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive-binaries riscv64 2019.20190605.51237-3build2 [6646 kB] Get:199 http://ftpmaster.internal/ubuntu focal/main riscv64 xdg-utils all 1.1.3-2ubuntu1 [61.6 kB] Get:200 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive-base all 2019.20200218-1 [20.8 MB] Get:201 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive-fonts-recommended all 2019.20200218-1 [4972 kB] Get:202 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive-latex-base all 2019.20200218-1 [990 kB] Get:203 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive-latex-recommended all 2019.20200218-1 [15.7 MB] Get:204 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive all 2019.20200218-1 [14.4 kB] Get:205 http://ftpmaster.internal/ubuntu focal/universe riscv64 libfontbox-java all 1:1.8.16-2 [207 kB] Get:206 http://ftpmaster.internal/ubuntu focal/universe riscv64 libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:207 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive-pictures all 2019.20200218-1 [4492 kB] Get:208 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive-latex-extra all 2019.202000218-1 [12.5 MB] Get:209 http://ftpmaster.internal/ubuntu focal/universe riscv64 texlive-plain-generic all 2019.202000218-1 [24.6 MB] Get:210 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 openjdk-11-jdk riscv64 11.0.7+9-1ubuntu1 [13.1 kB] Get:211 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 libharfbuzz0b riscv64 2.6.4-1ubuntu2+riscv64.1 [397 kB] Get:212 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 libharfbuzz-icu0 riscv64 2.6.4-1ubuntu2+riscv64.1 [5044 B] Get:213 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 ruby2.7 riscv64 2.7.0-4+riscv64.1 [95.4 kB] Get:214 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 libruby2.7 riscv64 2.7.0-4+riscv64.1 [3322 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 342 MB in 47s (7270 kB/s) Selecting previously unselected package libpython3.8-minimal:riscv64. 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Setting up libgraphite2-3:riscv64 (1.3.13-11build1) ... Setting up liblcms2-2:riscv64 (2.9-4) ... Setting up libpixman-1-0:riscv64 (0.38.4-0ubuntu1) ... Setting up libx11-xcb1:riscv64 (2:1.6.9-2ubuntu1) ... Setting up libxau6:riscv64 (1:1.0.9-0ubuntu1) ... Setting up libkeyutils1:riscv64 (1.6-6ubuntu1) ... Setting up mime-support (3.64ubuntu1) ... Setting up java-common (0.72) ... Setting up libcommons-cli-java (1.4-1) ... Setting up ruby-power-assert (1.1.7-1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up gawk (1:5.0.1+dfsg-1) ... Setting up libtexlua53:riscv64 (2019.20190605.51237-3build2) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libyaml-0-2:riscv64 (0.2.2-1) ... Setting up libglib2.0-0:riscv64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libglvnd0:riscv64 (1.3.1-1) ... Setting up libdebhelper-perl (12.10ubuntu1) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up x11-common (1:7.7+19ubuntu14) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-2ubuntu1) ... Setting up libmagic1:riscv64 (1:5.38-4) ... Setting up liblog4j1.2-java (1.2.17-9) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up m4 (1.4.18-4) ... Setting up rubygems-integration (1.16) ... Setting up libzzip-0-13:riscv64 (0.13.62-3.2ubuntu1) ... Setting up file (1:5.38-4) ... Setting up libossp-uuid16:riscv64 (1.6.2-1.5build7) ... Setting up libkrb5support0:riscv64 (1.17-6ubuntu4) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Apr 4 20:19:31 UTC 2020. Universal Time is now: Sat Apr 4 20:19:31 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ruby-minitest (5.13.0-1) ... Setting up libcommons-collections3-java (3.2.2-2) ... Setting up libasound2-data (1.2.2-2.1) ... Setting up autotools-dev (20180224.1) ... Setting up libgmpxx4ldbl:riscv64 (2:6.2.0+dfsg-4) ... Setting up libfreetype6:riscv64 (2.10.1-2) ... Setting up ruby-test-unit (3.3.4-1) ... Setting up libx11-data (2:1.6.9-2ubuntu1) ... Setting up libnspr4:riscv64 (2:4.25-1) ... Setting up libteckit0:riscv64 (2.5.8+ds2-5ubuntu2) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:riscv64 (0.7-4ubuntu6) ... Setting up libncurses6:riscv64 (6.2-0ubuntu2) ... Setting up libdbus-1-3:riscv64 (1.12.16-2ubuntu2) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up t1utils (1.41-3) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up libcommons-pool-java (1.6-3) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:riscv64 (1.8.26-3) ... Setting up ucf (3.0038+nmu1) ... 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Setting up libboost-serialization1.71.0:riscv64 (1.71.0-6ubuntu5+riscv64.1) ... Setting up libkrb5-3:riscv64 (1.17-6ubuntu4) ... Setting up libmpdec2:riscv64 (2.4.2-3) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libxerces2-java (2.12.1-1) ... Setting up libjaxp1.3-java (1.3.05-5) ... Setting up libpython3.8-stdlib:riscv64 (3.8.2-1ubuntu1) ... Setting up python3.8 (3.8.2-1ubuntu1) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libdrm-common (2.4.100-4) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up xdg-utils (1.1.3-2ubuntu1) ... Setting up libbsd-dev:riscv64 (0.10.0-1) ... Setting up chrpath (0.16-2) ... Setting up libsynctex2:riscv64 (2019.20190605.51237-3build2) ... Setting up libpython3-stdlib:riscv64 (3.8.2-0ubuntu2) ... Setting up libgflags2.2 (2.2.2-1build1) ... Setting up libjpeg8:riscv64 (8c-2ubuntu8) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libcommons-dbcp-java (1.4-6) ... Setting up libpaper1:riscv64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:riscv64 (2:1.0.10-0ubuntu1) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu1) ... Setting up libncurses-dev:riscv64 (6.2-0ubuntu2) ... Setting up libxcb1:riscv64 (1.14-2) ... Setting up libgmp-dev:riscv64 (2:6.2.0+dfsg-4) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libstringtemplate4-java (4.0.8-2) ... Setting up libtool (2.4.6-13) ... Setting up libhsqldb-java (2.5.0-1build2) ... Setting up libxcb-render0:riscv64 (1.14-2) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up libxcb-glx0:riscv64 (1.14-2) ... Setting up libedit2:riscv64 (3.1-20191231-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:riscv64 (0.7-4ubuntu6) ... Setting up libcommons-logging-java (1.2-2) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up libnss3:riscv64 (2:3.49.1-1ubuntu1) ... Setting up libxcb-shm0:riscv64 (1.14-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libreadline-dev:riscv64 (8.0-4) ... Setting up libcommons-lang-java (2.6-9) ... Setting up libxcb-present0:riscv64 (1.14-2) ... Setting up tex-common (6.13) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libptexenc1:riscv64 (2019.20190605.51237-3build2) ... Setting up libxcb-sync1:riscv64 (1.14-2) ... Setting up libxalan2-java (2.7.2-2) ... Setting up libedit-dev:riscv64 (3.1-20191231-1) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:riscv64 (1.17-6ubuntu4) ... Setting up libxcb-dri2-0:riscv64 (1.14-2) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up libdrm2:riscv64 (2.4.100-4) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libx11-6:riscv64 (2:1.6.9-2ubuntu1) ... Setting up libfontconfig1:riscv64 (2.13.1-2ubuntu2) ... Setting up libcommons-configuration-java (1.10-5) ... Setting up libsm6:riscv64 (2:1.2.3-1) ... Setting up libgoogle-glog0v5 (0.4.0-1build1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-4build1) ... Setting up libavahi-client3:riscv64 (0.7-4ubuntu6) ... Setting up libxcb-dri3-0:riscv64 (1.14-2) ... Setting up libdrm-nouveau2:riscv64 (2.4.100-4) ... Setting up libharfbuzz-icu0:riscv64 (2.6.4-1ubuntu2+riscv64.1) ... Setting up libxdamage1:riscv64 (1:1.1.5-1) ... Setting up libxpm4:riscv64 (1:3.5.12-1) ... Setting up libxrender1:riscv64 (1:0.9.10-1) ... Setting up libcassie1v5 (1.0.9-2build1) ... Setting up libarchive13:riscv64 (3.4.0-1ubuntu2) ... Setting up libdrm-radeon1:riscv64 (2.4.100-4) ... Setting up preview-latex-style (11.91-2ubuntu2) ... Setting up libgl1-mesa-dri:riscv64 (20.0.2-1ubuntu1) ... Setting up cassiopee (1.0.9-2build1) ... Setting up libxext6:riscv64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:riscv64 (1.16.0-4ubuntu1) ... Setting up libxxf86vm1:riscv64 (1:1.1.4-1build1) ... Setting up libxfixes3:riscv64 (1:5.0.3-1) ... Setting up libxinerama1:riscv64 (2:1.1.4-2) ... Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up libxt6:riscv64 (1:1.1.5-1) ... Setting up libcups2:riscv64 (2.3.1-9ubuntu1) ... Setting up swi-prolog-nox (7.6.4+dfsg-2ubuntu2) ... update-alternatives: using /usr/bin/swipl to provide /usr/bin/prolog (prolog) in auto mode Setting up libxft2:riscv64 (2.3.3-0ubuntu1) ... Setting up libxmu6:riscv64 (2:1.1.3-0ubuntu1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libglx-mesa0:riscv64 (20.0.2-1ubuntu1) ... Setting up libxi6:riscv64 (2:1.7.10-0ubuntu1) ... Setting up libglx0:riscv64 (1.3.1-1) ... Setting up libxtst6:riscv64 (2:1.2.3-1) ... Setting up libxaw7:riscv64 (2:1.0.13-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgl1:riscv64 (1.3.1-1) ... Setting up texlive-binaries (2019.20190605.51237-3build2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2019.20200218-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up swi-prolog-x (7.6.4+dfsg-2ubuntu2) ... Setting up po-debconf (1.0.21) ... Setting up texlive-plain-generic (2019.202000218-1) ... Setting up texlive-latex-base (2019.20200218-1) ... Setting up texlive-latex-recommended (2019.20200218-1) ... Setting up texlive-pictures (2019.20200218-1) ... Setting up texlive-fonts-recommended (2019.20200218-1) ... Setting up swi-prolog (7.6.4+dfsg-2ubuntu2) ... Setting up texlive (2019.20200218-1) ... Setting up texlive-latex-extra (2019.202000218-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:riscv64 (11.0.7+9-1ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ruby2.7 (2.7.0-4+riscv64.1) ... Setting up debhelper (12.10ubuntu1) ... Setting up openjdk-11-jre:riscv64 (11.0.7+9-1ubuntu1) ... Setting up openjdk-11-jdk-headless:riscv64 (11.0.7+9-1ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode Setting up default-jre (2:1.11-72) ... Setting up dh-autoreconf (19) ... Setting up ruby (1:2.7) ... Setting up default-jdk-headless (2:1.11-72) ... Setting up rake (13.0.1-2) ... Setting up antlr3 (3.5.2-9) ... Setting up ant (1.10.7-1) ... Setting up openjdk-11-jdk:riscv64 (11.0.7+9-1ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190405ubuntu1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:EC-ACC.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:AffirmTrust_Premium.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Certigna.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:Taiwan_GRCA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:AffirmTrust_Networking.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ACCVRAIZ1.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:AddTrust_External_Root.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Secure_Global_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:SecureTrust_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Izenpe.com.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:TrustCor_ECA-1.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem done. Setting up ruby-text (1.3.0-1) ... Setting up libbytecode-java (0.92.svn.20090106-2) ... Setting up junit4 (4.12-8) ... Setting up ruby-cassiopee (0.1.13-1) ... Setting up default-jdk (2:1.11-72) ... Setting up libruby2.7:riscv64 (2.7.0-4+riscv64.1) ... Setting up ant-optional (1.10.7-1) ... Setting up libbiojava1.7-java (1:1.7.1-8) ... Setting up libbiojava-java (1:1.7.1-8) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... Processing triggers for ca-certificates (20190110ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.13) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 (riscv64) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-8ubuntu1 gcc-9_9.3.0-8ubuntu1 libc6-dev_2.31-0ubuntu7 libstdc++-9-dev_9.3.0-8ubuntu1 libstdc++6_10-20200324-1ubuntu1 linux-libc-dev_5.4.0-21.25 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 ant_1.10.7-1 ant-optional_1.10.7-1 antlr3_3.5.2-9 apt_2.0.1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 binutils-riscv64-linux-gnu_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 ca-certificates-java_20190405ubuntu1 cassiopee_1.0.9-2build1 chrpath_0.16-2 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-8ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10ubuntu1 debianutils_4.9.1 default-jdk_2:1.11-72 default-jdk-headless_2:1.11-72 default-jre_2:1.11-72 default-jre-headless_2:1.11-72 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 file_1:5.38-4 findutils_4.7.0-1ubuntu1 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-6 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-8ubuntu1 gawk_1:5.0.1+dfsg-1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200324-1ubuntu1 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rake_13.0.1-2 readline-common_8.0-4 ruby_1:2.7 ruby-cassiopee_0.1.13-1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.13.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.7-1 ruby-test-unit_3.3.4-1 ruby-text_1.3.0-1 ruby-xmlrpc_0.3.0-2 ruby2.7_2.7.0-4+riscv64.1 rubygems-integration_1.16 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swi-prolog_7.6.4+dfsg-2ubuntu2 swi-prolog-nox_7.6.4+dfsg-2ubuntu2 swi-prolog-x_7.6.4+dfsg-2ubuntu2 sysvinit-utils_2.96-2.1ubuntu1 t1utils_1.41-3 tar_1.30+dfsg-7 tex-common_6.13 texlive_2019.20200218-1 texlive-base_2019.20200218-1 texlive-binaries_2019.20190605.51237-3build2 texlive-fonts-recommended_2019.20200218-1 texlive-latex-base_2019.20200218-1 texlive-latex-extra_2019.202000218-1 texlive-latex-recommended_2019.20200218-1 texlive-pictures_2019.20200218-1 texlive-plain-generic_2019.202000218-1 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 ucf_3.0038+nmu1 util-linux_2.34-0.1ubuntu8 x11-common_1:7.7+19ubuntu14 xdg-utils_1.1.3-2ubuntu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: logol Binary: logol, logol-bin Architecture: any all Version: 1.7.9-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: http://logol.genouest.org Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/logol Vcs-Git: https://salsa.debian.org/med-team/logol.git Build-Depends: debhelper-compat (= 12), default-jdk, ant, ruby, gawk, swi-prolog, libbiojava-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath Package-List: logol deb science optional arch=all logol-bin deb science optional arch=any Checksums-Sha1: 84b5c5885e2b98545fdaf35389743dbe3e198f2a 2707918 logol_1.7.9.orig.tar.bz2 95eecdc765da2fda86deeb7d749d3f87dc5e0e1a 12280 logol_1.7.9-2.debian.tar.xz Checksums-Sha256: 8dcc1c7287c7c25b6def4c3240e2038a0ce70d91fb4335b465d597364fe6e66f 2707918 logol_1.7.9.orig.tar.bz2 9cb1a4b16436b7f357d36eaab086458f713f0181b6b1c27d4940f79ba34bf5e1 12280 logol_1.7.9-2.debian.tar.xz Files: 8ca0748a5c12b614319ad8340930cc6f 2707918 logol_1.7.9.orig.tar.bz2 85dce8a690b3e20af9c72796ca85262a 12280 logol_1.7.9-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl5S6ooOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtFh/A//a8PagWIpCQ9FVVwWPDsuv/PjFvDDiUWjPQIC uKp+nTjacnyvdQ+c/qFyQ1C7lUczltYMhjs6h2kICBpOwcdV+UX1UZJ9Su75OUCB WTt0L1kCvvKWWnpYncMd7JD6nmdJr5i6YjdCF9XzImFrM5oSUIX4Dxfe+ocWlY1s f/SJ+tcI4O7yRiFwzUv6zazks7LTz4YwCiXANbkTMgJAo6Yjb2RjVw2pVOila3NT 98/xZkGfK/3sec8wnVCJInTXVY+deCMIa3JCDQu7+sgQPJjxO5I3IbQRbE16wkth HVVXALM2EOP2vuUExI0u+tgMJfFtmtX6VB6nKp/i0f31H5zx5/nkVWPSVOYr1y3a ypucuo93czK7/XlmUB7Nq3FgvEJw1LTInBsGxZ3uGyrNEdyPNP32rMdcdy/ZoCWt +0eq+LGx152vvEbgqUZs6vWcDFnclTfXOfB0zC+Z5fCqOnLebwUwbbqm4hinDwsH OzkxKDqKUbtc1JYUegqcef6Csvu4dTjGsU2c8JdjcygWb30UG1Toenap5MMHixNp PS35vxXH5FrMbJY9L3oVYyFayDSNC0g5HY214tvsrfcG8y+No1BRBexvNlZxYDWE 4CGEONzSSPvcjykEe0zpFefYP3dL4GsdHVAnCUQ+Jeh5rclK5f/NFNxLhc5CiZxf zBUTwCA= =zLGl -----END PGP SIGNATURE----- gpgv: Signature made Sun Feb 23 21:11:38 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./logol_1.7.9-2.dsc dpkg-source: info: extracting logol in /<> dpkg-source: info: unpacking logol_1.7.9.orig.tar.bz2 dpkg-source: info: unpacking logol_1.7.9-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_drmaa_support dpkg-source: info: applying fixLibPath dpkg-source: info: applying setDebianDirs dpkg-source: info: applying fix_doc_generation dpkg-source: info: applying remove_rubygems_usage dpkg-source: info: applying fix_antlr35 dpkg-source: info: applying fix_swipl_declarations dpkg-source: info: applying fix_swipl_foreign_load dpkg-source: info: applying remove_test Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19107115 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19107115 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19107115 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package logol dpkg-buildpackage: info: source version 1.7.9-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi if [ -e prolog/process.so ]; then rm -f prolog/process.so; fi dh_auto_clean ant clean Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. clean: BUILD SUCCESSFUL Total time: 50 seconds make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' if [ -e tools/pldoc.sty.upstream ]; then mv tools/pldoc.sty.upstream tools/pldoc.sty; fi if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi dh_clean rm -f Swi*.xml rm -f prolog/*.exe rm -f lib/*.jar rm -f *.log rm -f src/org/irisa/genouest/logol/parser/* rm -f tools/suffixSearch.sh rm -rf test/tmp rm -rf test/results make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' if [ ! -e lib ]; then mkdir -p lib; fi if [ ! -e prolog/process.so ]; then ln -s /usr/lib/swi-prolog/lib/riscv64-linux/process.so prolog/process.so; fi mv tools/pldoc.sty tools/pldoc.sty.upstream dh_auto_build -- -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 ant -Duser.name debian -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. updatemod: setup: compile_swi_exe: [exec] CC="gcc" [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="riscv64" [exec] PLLIBS="" [exec] PLLIB="-lswipl" [exec] PLCFLAGS="-pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_DEFAULT_SOURCE -D_XOPEN_SOURCE=600" [exec] PLLDFLAGS="-rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/swi-prolog-X2BdOq/swi-prolog-7.6.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread" [exec] PLSOEXT="so" [exec] PLTHREADS="yes" [exec] logolSwiMain.c: In function ‘main’: [exec] logolSwiMain.c:50:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 50 | PL_put_string_chars(ResultFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:52:4: warning: ignoring return value of ‘PL_next_solution’, declared with attribute warn_unused_result [-Wunused-result] [exec] 52 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:58:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 58 | PL_put_string_chars(File,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:62:4: warning: ignoring return value of ‘PL_put_integer’, declared with attribute warn_unused_result [-Wunused-result] [exec] 62 | PL_put_integer(HeaderSize, header); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:67:4: warning: ignoring return value of ‘PL_next_solution’, declared with attribute warn_unused_result [-Wunused-result] [exec] 67 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:76:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 76 | PL_put_string_chars(LogolFile,argv[6]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:78:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 78 | PL_put_string_chars(InFile,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:80:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 80 | PL_put_string_chars(OutFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:82:4: warning: ignoring return value of ‘PL_put_integer’, declared with attribute warn_unused_result [-Wunused-result] [exec] 82 | PL_put_integer(Offset,offset); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:102:4: warning: ignoring return value of ‘PL_next_solution’, declared with attribute warn_unused_result [-Wunused-result] [exec] 102 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:120:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 120 | PL_put_string_chars(ResultFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:122:4: warning: ignoring return value of ‘PL_next_solution’, declared with attribute warn_unused_result [-Wunused-result] [exec] 122 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] Warning: /<>/prolog/sicstus.pl:495: [exec] Singleton variables: [Before,Length,CountPos,CountLength] [exec] ERROR: /<>/prolog/logol.pl:7: [exec] catch/3: Undefined procedure: module/3 [exec] However, there are definitions for: [exec] module/1 [exec] Warning: /<>/prolog/logol.pl:7: [exec] Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[]) [exec] Warning: /<>/prolog/logol.pl:206: [exec] Singleton variables: [Max] [exec] Warning: /<>/prolog/logol.pl:221: [exec] Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:304: [exec] Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:304: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:394: [exec] Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:408: [exec] Singleton variables: [Unique,Out,Exit] [exec] Warning: /<>/prolog/logol.pl:434: [exec] Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:472: [exec] Singleton variables: [NewPos] [exec] Warning: /<>/prolog/logol.pl:472: [exec] Singleton variable in branch: NewPos [exec] Warning: /<>/prolog/logol.pl:514: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:517: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:556: [exec] Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:575: [exec] Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:590: [exec] Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:590: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: IntermediateSpacer [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:673: [exec] Singleton variables: [InputLength] [exec] Warning: /<>/prolog/logol.pl:679: [exec] Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /<>/prolog/logol.pl:724: [exec] Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /<>/prolog/logol.pl:964: [exec] Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:993: [exec] Singleton variables: [Word] [exec] Warning: /<>/prolog/logol.pl:1024: [exec] Singleton variables: [N,Min,Max,Z] [exec] Warning: /<>/prolog/logol.pl:1068: [exec] Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:1162: [exec] Singleton variables: [Errors] [exec] Warning: /<>/prolog/logol.pl:1266: [exec] Singleton variables: [Morph,Reverse] [exec] Warning: /<>/prolog/logol.pl:1270: [exec] Singleton variables: [Morph] [exec] Warning: /<>/prolog/logol.pl:1281: [exec] Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /<>/prolog/logol.pl:1317: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1341: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1645: [exec] Singleton variables: [Name] [exec] Warning: /<>/prolog/logol.pl:2036: [exec] Singleton variables: [Matrix] [exec] Warning: /<>/prolog/logol.pl:2077: [exec] Singleton variables: [Type] [exec] Warning: /<>/prolog/logol.pl:2180: [exec] Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:2335: [exec] Singleton variables: [FilterPredicate] [exec] Warning: /<>/prolog/logol.pl:2350: [exec] Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /<>/prolog/logol.pl:2380: [exec] Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2395: [exec] Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2435: [exec] Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:2435: [exec] Singleton variable in branch: Max [exec] Singleton variable in branch: Z [exec] Warning: /<>/prolog/logol.pl:2470: [exec] Singleton variables: [VarId] [exec] Warning: /<>/prolog/logol.pl:2498: [exec] Singleton variables: [X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2516: [exec] Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2534: [exec] Singleton variables: [ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2576: [exec] Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /<>/prolog/logol.pl:2604: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2608: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2624: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2644: [exec] Singleton variables: [ID] [exec] Warning: /<>/prolog/logol.pl:2647: [exec] Singleton variables: [OPTVAR] [exec] Warning: /<>/prolog/logol.pl:2653: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2701: [exec] Singleton variables: [DATA] [exec] Warning: /<>/prolog/logol.pl:2752: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2755: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2758: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2761: [exec] Singleton variables: [MATCH,ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2766: [exec] Singleton variables: [VAR,VARFOUND] [exec] Warning: /<>/prolog/logol.pl:2769: [exec] Singleton variables: [VAR,VARFOUND] [exec] % autoloading prolog_codewalk:must_be/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading prolog_codewalk:portray_clause/1 from /usr/lib/swi-prolog/library/listing [exec] % autoloading prolog_codewalk:clause_info/4 from /usr/lib/swi-prolog/library/prolog_clause [exec] % autoloading prolog_codewalk:initialization_layout/4 from /usr/lib/swi-prolog/library/prolog_clause [exec] % autoloading prolog_debug:backtrace/1 from /usr/lib/swi-prolog/library/prolog_stack [exec] % autoloading process:existence_error/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading process:maplist/3 from /usr/lib/swi-prolog/library/apply [exec] % autoloading process:must_be/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading sicstus:read_line_to_codes/2 from /usr/lib/swi-prolog/library/readutil [exec] % autoloading qsave:current_foreign_library/2 from /usr/lib/swi-prolog/library/shlib [exec] % autoloading oset:reverse/2 from /usr/lib/swi-prolog/library/lists [exec] % autoloading record:member/2 from /usr/lib/swi-prolog/library/lists [exec] % autoloading error:assertion/1 from /usr/lib/swi-prolog/library/debug [exec] % autoloading prolog_codewalk:clause_name/2 from /usr/lib/swi-prolog/library/prolog_clause [exec] % Found new meta-predicates in iteration 1 (1.754 sec) [exec] % :- meta_predicate user:callpred(0,*,*). [exec] % Restarting analysis ... [exec] % Found new meta-predicates in iteration 2 (0.661 sec) [exec] % :- meta_predicate user:notpred_pos(*,*,0,*,*,*). [exec] % Restarting analysis ... [exec] % Autoloader: iteration 1 resolved 9 predicates and loaded 14 files in 3.088 seconds. Restarting ... [exec] % Autoloader: loaded 9 files in 2 iterations in 3.925 seconds [exec] % halt [exec] eval `swipl --dump-runtime-variables` [exec] gcc -c -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_DEFAULT_SOURCE -D_XOPEN_SOURCE=600 -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o logolSwiMain.o logolSwiMain.c [exec] gcc -o logol.exe -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/swi-prolog-X2BdOq/swi-prolog-7.6.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread logolSwiMain.o -L/usr/lib/swi-prolog/lib/riscv64 -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-503295',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-503295 >> logol.exe [exec] chmod 755 logol.exe [exec] rm logolSwiMain.o [exec] rm pltmp-503295 [exec] CC="gcc" [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="riscv64" [exec] PLLIBS="" [exec] PLLIB="-lswipl" [exec] PLCFLAGS="-pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_DEFAULT_SOURCE -D_XOPEN_SOURCE=600" [exec] PLLDFLAGS="-rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/swi-prolog-X2BdOq/swi-prolog-7.6.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread" [exec] PLSOEXT="so" [exec] PLTHREADS="yes" [exec] preSwiMain.c: In function ‘main’: [exec] preSwiMain.c:40:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 40 | PL_put_string_chars(LogolFile1,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:42:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 42 | PL_put_string_chars(LogolFile2,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:44:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 44 | PL_put_string_chars(LogolFile3,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:46:4: warning: ignoring return value of ‘PL_put_string_chars’, declared with attribute warn_unused_result [-Wunused-result] [exec] 46 | PL_put_string_chars(LogolFile4,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] Warning: /<>/prolog/sicstus.pl:495: [exec] Singleton variables: [Before,Length,CountPos,CountLength] [exec] ERROR: /<>/prolog/logol.pl:7: [exec] catch/3: Undefined procedure: module/3 [exec] However, there are definitions for: [exec] module/1 [exec] Warning: /<>/prolog/logol.pl:7: [exec] Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[]) [exec] Warning: /<>/prolog/logol.pl:206: [exec] Singleton variables: [Max] [exec] Warning: /<>/prolog/logol.pl:221: [exec] Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:304: [exec] Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:304: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:394: [exec] Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:408: [exec] Singleton variables: [Unique,Out,Exit] [exec] Warning: /<>/prolog/logol.pl:434: [exec] Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:472: [exec] Singleton variables: [NewPos] [exec] Warning: /<>/prolog/logol.pl:472: [exec] Singleton variable in branch: NewPos [exec] Warning: /<>/prolog/logol.pl:514: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:517: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:556: [exec] Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:575: [exec] Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:590: [exec] Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:590: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: IntermediateSpacer [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:673: [exec] Singleton variables: [InputLength] [exec] Warning: /<>/prolog/logol.pl:679: [exec] Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /<>/prolog/logol.pl:724: [exec] Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /<>/prolog/logol.pl:964: [exec] Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:993: [exec] Singleton variables: [Word] [exec] Warning: /<>/prolog/logol.pl:1024: [exec] Singleton variables: [N,Min,Max,Z] [exec] Warning: /<>/prolog/logol.pl:1068: [exec] Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:1162: [exec] Singleton variables: [Errors] [exec] Warning: /<>/prolog/logol.pl:1266: [exec] Singleton variables: [Morph,Reverse] [exec] Warning: /<>/prolog/logol.pl:1270: [exec] Singleton variables: [Morph] [exec] Warning: /<>/prolog/logol.pl:1281: [exec] Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /<>/prolog/logol.pl:1317: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1341: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1645: [exec] Singleton variables: [Name] [exec] Warning: /<>/prolog/logol.pl:2036: [exec] Singleton variables: [Matrix] [exec] Warning: /<>/prolog/logol.pl:2077: [exec] Singleton variables: [Type] [exec] Warning: /<>/prolog/logol.pl:2180: [exec] Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:2335: [exec] Singleton variables: [FilterPredicate] [exec] Warning: /<>/prolog/logol.pl:2350: [exec] Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /<>/prolog/logol.pl:2380: [exec] Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2395: [exec] Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2435: [exec] Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:2435: [exec] Singleton variable in branch: Max [exec] Singleton variable in branch: Z [exec] Warning: /<>/prolog/logol.pl:2470: [exec] Singleton variables: [VarId] [exec] Warning: /<>/prolog/logol.pl:2498: [exec] Singleton variables: [X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2516: [exec] Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2534: [exec] Singleton variables: [ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2576: [exec] Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /<>/prolog/logol.pl:2604: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2608: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2624: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2644: [exec] Singleton variables: [ID] [exec] Warning: /<>/prolog/logol.pl:2647: [exec] Singleton variables: [OPTVAR] [exec] Warning: /<>/prolog/logol.pl:2653: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2701: [exec] Singleton variables: [DATA] [exec] Warning: /<>/prolog/logol.pl:2752: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2755: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2758: [exec] Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2761: [exec] Singleton variables: [MATCH,ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2766: [exec] Singleton variables: [VAR,VARFOUND] [exec] Warning: /<>/prolog/logol.pl:2769: [exec] Singleton variables: [VAR,VARFOUND] [exec] % autoloading prolog_codewalk:must_be/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading prolog_codewalk:portray_clause/1 from /usr/lib/swi-prolog/library/listing [exec] % autoloading prolog_codewalk:clause_info/4 from /usr/lib/swi-prolog/library/prolog_clause [exec] % autoloading prolog_codewalk:initialization_layout/4 from /usr/lib/swi-prolog/library/prolog_clause [exec] % autoloading prolog_debug:backtrace/1 from /usr/lib/swi-prolog/library/prolog_stack [exec] % autoloading process:existence_error/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading process:maplist/3 from /usr/lib/swi-prolog/library/apply [exec] % autoloading process:must_be/2 from /usr/lib/swi-prolog/library/error [exec] % autoloading sicstus:read_line_to_codes/2 from /usr/lib/swi-prolog/library/readutil [exec] % autoloading qsave:current_foreign_library/2 from /usr/lib/swi-prolog/library/shlib [exec] % autoloading oset:reverse/2 from /usr/lib/swi-prolog/library/lists [exec] % autoloading record:member/2 from /usr/lib/swi-prolog/library/lists [exec] % autoloading error:assertion/1 from /usr/lib/swi-prolog/library/debug [exec] % autoloading prolog_codewalk:clause_name/2 from /usr/lib/swi-prolog/library/prolog_clause [exec] % Found new meta-predicates in iteration 1 (1.687 sec) [exec] % :- meta_predicate user:callpred(0,*,*). [exec] % Restarting analysis ... [exec] % Found new meta-predicates in iteration 2 (0.769 sec) [exec] % :- meta_predicate user:notpred_pos(*,*,0,*,*,*). [exec] % Restarting analysis ... [exec] % Autoloader: iteration 1 resolved 9 predicates and loaded 14 files in 3.181 seconds. Restarting ... [exec] % Autoloader: loaded 9 files in 2 iterations in 3.867 seconds [exec] % halt [exec] eval `swipl --dump-runtime-variables` [exec] gcc -c -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_DEFAULT_SOURCE -D_XOPEN_SOURCE=600 -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o preSwiMain.o preSwiMain.c [exec] gcc -o preanalyse.exe -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/swi-prolog-X2BdOq/swi-prolog-7.6.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread preSwiMain.o -L/usr/lib/swi-prolog/lib/riscv64 -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-503312',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-503312 >> preanalyse.exe [exec] chmod 755 preanalyse.exe [exec] rm preSwiMain.o [exec] rm pltmp-503312 clean: antlr: [java] ANTLR Parser Generator Version 3.5.2 [java] /<>/src/logol.g compile: [mkdir] Created dir: /<>/bin [javac] /<>/build.xml:91: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 62 source files to /<>/bin [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] /<>/src/org/irisa/genouest/logol/test/GrammarTest.java:1995: warning: unreachable catch clause [javac] } catch (IOException e) { [javac] ^ [javac] thrown type FileNotFoundException has already been caught [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 2 warnings create-jar: [jar] Building jar: /<>/lib/LogolExec.jar test_swi: [mkdir] Created dir: /<>/test/tmp [mkdir] Created dir: /<>/test/results [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:1: [exec] Singleton variables: [UnitPath,Lib] [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:1: [exec] Goal (directive) failed: user:(prolog_flag(argv,[_3536,_3558,_3580,_3602,_3624,_3646,_3668,_3690,_3712,_3734]),ensure_loaded(_3646)) [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:5: [exec] Singleton variables: [SicPath,Lib] [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:5: [exec] Goal (directive) failed: user:(prolog_flag(argv,[_3536,_3558,_3580,_3602,_3624,_3646,_3668,_3690,_3712,_3734]),ensure_loaded(_3624)) [exec] Welcome to SWI-Prolog (threaded, 64 bits, version 7.6.4) [exec] SWI-Prolog comes with ABSOLUTELY NO WARRANTY. This is free software. [exec] Please run ?- license. for legal details. [exec] [exec] For online help and background, visit http://www.swi-prolog.org [exec] For built-in help, use ?- help(Topic). or ?- apropos(Word). [exec] [exec] % halt [exec] [junit] Running org.irisa.genouest.logol.test.GrammarTest [junit] Testsuite: org.irisa.genouest.logol.test.GrammarTest [junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 991.002 sec [junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 991.002 sec [junit] [junit] ------------- Standard Output --------------- [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.logol.bab7e97a-f56b-45df-88a3-6a3cf78ba359.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.logol.bab7e97a-f56b-45df-88a3-6a3cf78ba359.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.logol.bab7e97a-f56b-45df-88a3-6a3cf78ba359.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_overlap.logol.556e7dcf-408f-4b4d-9da7-b4d66c210ef1.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_overlap.logol.556e7dcf-408f-4b4d-9da7-b4d66c210ef1.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_overlap.logol.556e7dcf-408f-4b4d-9da7-b4d66c210ef1.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/partialcomplement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.Logol - option offset called with 1000 [junit] INFO org.irisa.genouest.logol.Logol - option start called with 5 [junit] INFO org.irisa.genouest.logol.Logol - option end called with 35 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.d1d17ba4-996c-4a2e-927a-443036785363.1005-1035.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.d1d17ba4-996c-4a2e-927a-443036785363.reverse.1005-1035.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/partialcomplement.logol.d1d17ba4-996c-4a2e-927a-443036785363.5-35-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/partialcomplement.logol.d1d17ba4-996c-4a2e-927a-443036785363.5-35-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/alphabet.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/alphabet.logol.c78dbb85-4b28-48b5-8d4f-8ab676cc3a53.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/alphabet.logol.c78dbb85-4b28-48b5-8d4f-8ab676cc3a53.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/alphabet.logol.c78dbb85-4b28-48b5-8d4f-8ab676cc3a53.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/optimal.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.logol.c198d575-69a1-423a-bde9-ccf2f93e3076.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.logol.c198d575-69a1-423a-bde9-ccf2f93e3076.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.logol.c198d575-69a1-423a-bde9-ccf2f93e3076.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_startspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_startspacer.logol.4dbdb55d-26ab-4030-b3cc-a63bd197c860.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_startspacer.logol.4dbdb55d-26ab-4030-b3cc-a63bd197c860.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_startspacer.logol.4dbdb55d-26ab-4030-b3cc-a63bd197c860.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/overlap.logol.cf7fc19e-7921-406b-9b34-3c653a2fe962.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/overlap.logol.cf7fc19e-7921-406b-9b34-3c653a2fe962.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/overlap.logol.cf7fc19e-7921-406b-9b34-3c653a2fe962.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/end.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end.logol.068b6798-edfc-4c27-bbef-4e5a6193b6cd.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end.logol.068b6798-edfc-4c27-bbef-4e5a6193b6cd.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end.logol.068b6798-edfc-4c27-bbef-4e5a6193b6cd.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.logol.c8ff7456-e1b3-47fb-9277-1ead1c21e941.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.logol.c8ff7456-e1b3-47fb-9277-1ead1c21e941.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.logol.c8ff7456-e1b3-47fb-9277-1ead1c21e941.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.logol.876d319b-5b8e-4bd6-a5e8-9468d3e18787.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.logol.876d319b-5b8e-4bd6-a5e8-9468d3e18787.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.logol.876d319b-5b8e-4bd6-a5e8-9468d3e18787.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1799.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/1799.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1799.logol.0cf095f8-83c2-4350-b676-b61ae2102b8d.1-4.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1799.logol.0cf095f8-83c2-4350-b676-b61ae2102b8d.0-4-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1799.logol.0cf095f8-83c2-4350-b676-b61ae2102b8d.0-4-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1800.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/1800.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1800.logol.7241f471-579a-46fb-b4b3-a03daedabc58.1-19.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1800.logol.7241f471-579a-46fb-b4b3-a03daedabc58.0-19-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1800.logol.7241f471-579a-46fb-b4b3-a03daedabc58.0-19-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1806.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1806.logol.27bc4f23-c61a-4739-b659-8971ccc9be60.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1806.logol.27bc4f23-c61a-4739-b659-8971ccc9be60.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1806.logol.27bc4f23-c61a-4739-b659-8971ccc9be60.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2244.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2244.logol.fe6d1a03-3d7d-4624-a628-db3ad6c512f5.1-31.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2244.logol.fe6d1a03-3d7d-4624-a628-db3ad6c512f5.0-31-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2244.logol.fe6d1a03-3d7d-4624-a628-db3ad6c512f5.0-31-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2235.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2235.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2235.logol.dd3131d8-bba4-4ee3-a38f-91d7e0a43eb5.1-26.xml: 6 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 6 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2235.logol.dd3131d8-bba4-4ee3-a38f-91d7e0a43eb5.0-26-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2235.logol.dd3131d8-bba4-4ee3-a38f-91d7e0a43eb5.0-26-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2242.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2242.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2242.logol.aacd5495-b525-441b-b6d4-b169165936ee.1-29.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2242.logol.aacd5495-b525-441b-b6d4-b169165936ee.0-29-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2242.logol.aacd5495-b525-441b-b6d4-b169165936ee.0-29-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2243.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2243.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2243.logol.d2cdd7b0-05cd-41f5-8b2b-e78bd95c41c5.1-15.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2243.logol.d2cdd7b0-05cd-41f5-8b2b-e78bd95c41c5.0-15-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2243.logol.d2cdd7b0-05cd-41f5-8b2b-e78bd95c41c5.0-15-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/fix2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/fix2244.logol.ce98598f-c1ba-4a49-ba7e-c70eee1d80dd.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/fix2244.logol.ce98598f-c1ba-4a49-ba7e-c70eee1d80dd.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/fix2244.logol.ce98598f-c1ba-4a49-ba7e-c70eee1d80dd.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/halt.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/halt.logol.5fb2f6f7-21cd-4fbd-bd30-f46a4eae9763.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/halt.logol.5fb2f6f7-21cd-4fbd-bd30-f46a4eae9763.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/halt.logol.5fb2f6f7-21cd-4fbd-bd30-f46a4eae9763.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent2.logol.a82c9c90-bcd8-4212-9a19-406c5adf7825.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent2.logol.a82c9c90-bcd8-4212-9a19-406c5adf7825.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent2.logol.a82c9c90-bcd8-4212-9a19-406c5adf7825.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent3.logol.d85e43bc-b6bb-4bc6-b5a2-de9338ec1667.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent3.logol.d85e43bc-b6bb-4bc6-b5a2-de9338ec1667.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent3.logol.d85e43bc-b6bb-4bc6-b5a2-de9338ec1667.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/external.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external.logol.bfe541ce-17f5-443a-ab4b-1cccf97eadd8.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external.logol.bfe541ce-17f5-443a-ab4b-1cccf97eadd8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external.logol.bfe541ce-17f5-443a-ab4b-1cccf97eadd8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/end_of_stream1.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream1.logol.d621393e-2734-4487-a476-1e77a742035e.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream1.logol.d621393e-2734-4487-a476-1e77a742035e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream1.logol.d621393e-2734-4487-a476-1e77a742035e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/end_of_stream2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream2.logol.5c4c3789-a8df-48ee-9b37-d7ca78f8f8aa.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream2.logol.5c4c3789-a8df-48ee-9b37-d7ca78f8f8aa.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream2.logol.5c4c3789-a8df-48ee-9b37-d7ca78f8f8aa.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/metacontrol.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/metacontrol.logol.ede4350e-9866-4390-9aa3-2f1ef63a6219.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/metacontrol.logol.ede4350e-9866-4390-9aa3-2f1ef63a6219.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/metacontrol.logol.ede4350e-9866-4390-9aa3-2f1ef63a6219.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/view_begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/view_begin.logol.22d0d5a9-d083-4ece-9493-7505b6dedc00.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/view_begin.logol.22d0d5a9-d083-4ece-9493-7505b6dedc00.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/view_begin.logol.22d0d5a9-d083-4ece-9493-7505b6dedc00.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/begin_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin_postpone.logol.efdb14bc-8811-4781-bdd4-e2b17371af41.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin_postpone.logol.efdb14bc-8811-4781-bdd4-e2b17371af41.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin_postpone.logol.efdb14bc-8811-4781-bdd4-e2b17371af41.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/complement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.accc1176-5058-4d2a-8637-14450732776e.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.accc1176-5058-4d2a-8637-14450732776e.reverse.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complement.logol.accc1176-5058-4d2a-8637-14450732776e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complement.logol.accc1176-5058-4d2a-8637-14450732776e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/protein.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/protein.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option protein called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/protein.logol.688046d5-ddfb-4ea8-99e0-db920385831c.1-23.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/protein.logol.688046d5-ddfb-4ea8-99e0-db920385831c.0-23-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/protein.logol.688046d5-ddfb-4ea8-99e0-db920385831c.0-23-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/morphism_var.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism_var.logol.c10f9a6c-76a0-47d1-b596-8d6d9b3bb67d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism_var.logol.c10f9a6c-76a0-47d1-b596-8d6d9b3bb67d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism_var.logol.c10f9a6c-76a0-47d1-b596-8d6d9b3bb67d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.b718a9ca-853f-4ea1-bba1-3b97f9e52a6c.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.b718a9ca-853f-4ea1-bba1-3b97f9e52a6c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.b718a9ca-853f-4ea1-bba1-3b97f9e52a6c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/cost_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/cost_postpone.logol.b4a57bc5-3a7f-4fda-8f2b-58b4dd24a602.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/cost_postpone.logol.b4a57bc5-3a7f-4fda-8f2b-58b4dd24a602.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/cost_postpone.logol.b4a57bc5-3a7f-4fda-8f2b-58b4dd24a602.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model.logol.3198f036-3e50-4311-aeda-4ca78504f55b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model.logol.3198f036-3e50-4311-aeda-4ca78504f55b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model.logol.3198f036-3e50-4311-aeda-4ca78504f55b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewithdistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance.logol.3e3b4bd5-e57b-4d66-94cf-cca69174fa68.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance.logol.3e3b4bd5-e57b-4d66-94cf-cca69174fa68.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance.logol.3e3b4bd5-e57b-4d66-94cf-cca69174fa68.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/optimal.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR1)==>LOGOLVAR2%mydata%:{?"aaaa"},LOGOLVAR3%X1%:{#OPT[2,8]} [junit] mod1(LOGOLVAR4)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/optimal.lgd.24ca47b4-282c-4b7c-a772-d08df7ae4ede.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.lgd.24ca47b4-282c-4b7c-a772-d08df7ae4ede.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.lgd.24ca47b4-282c-4b7c-a772-d08df7ae4ede.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.lgd.24ca47b4-282c-4b7c-a772-d08df7ae4ede.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewitherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherror.logol.ef938375-d2bb-4752-8a46-51f4c10af9b7.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherror.logol.ef938375-d2bb-4752-8a46-51f4c10af9b7.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherror.logol.ef938375-d2bb-4752-8a46-51f4c10af9b7.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/anyspacer.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR4)==>LOGOLVAR5%X1%:{@[0,20]},"ccc" [junit] mod1(LOGOLVAR6)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/anyspacer.lgd.0b560093-633a-4b57-a4a7-cbea2ce25822.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.lgd.0b560093-633a-4b57-a4a7-cbea2ce25822.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.lgd.0b560093-633a-4b57-a4a7-cbea2ce25822.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.lgd.0b560093-633a-4b57-a4a7-cbea2ce25822.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/all.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR6)==>"ccc",.*,"ccc" [junit] mod1(LOGOLVAR7)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/all.lgd.72d1c06f-ca47-42ec-a1a0-9c314fb2c043.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.lgd.72d1c06f-ca47-42ec-a1a0-9c314fb2c043.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.lgd.72d1c06f-ca47-42ec-a1a0-9c314fb2c043.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.lgd.72d1c06f-ca47-42ec-a1a0-9c314fb2c043.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_any.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_any.logol.aec95fb6-28b6-46ec-a72f-3681ed5d84e0.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_any.logol.aec95fb6-28b6-46ec-a72f-3681ed5d84e0.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_any.logol.aec95fb6-28b6-46ec-a72f-3681ed5d84e0.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/comment2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment2.logol.c7931260-7aa5-4508-b7aa-4c89b1053d83.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment2.logol.c7931260-7aa5-4508-b7aa-4c89b1053d83.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment2.logol.c7931260-7aa5-4508-b7aa-4c89b1053d83.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/negcontent.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR7)==>"aaaa",! "cgta":{#[3,5]} [junit] mod1(LOGOLVAR8)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/negcontent.lgd.fa7df8e6-14f8-43a9-b11b-4b841dbcb9e1.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.lgd.fa7df8e6-14f8-43a9-b11b-4b841dbcb9e1.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.lgd.fa7df8e6-14f8-43a9-b11b-4b841dbcb9e1.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.lgd.fa7df8e6-14f8-43a9-b11b-4b841dbcb9e1.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror.logol.1a480548-bfd0-46c7-b027-70556227a152.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror.logol.1a480548-bfd0-46c7-b027-70556227a152.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror.logol.1a480548-bfd0-46c7-b027-70556227a152.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_exact.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_exact.logol.83bdb5fa-fef8-43ec-a0ff-7e03264355f9.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_exact.logol.83bdb5fa-fef8-43ec-a0ff-7e03264355f9.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_exact.logol.83bdb5fa-fef8-43ec-a0ff-7e03264355f9.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/all.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.logol.d98f660e-970b-4ce7-9fc9-d331ac12cbbe.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.logol.d98f660e-970b-4ce7-9fc9-d331ac12cbbe.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.logol.d98f660e-970b-4ce7-9fc9-d331ac12cbbe.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_unknown.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_unknown.logol.eb63d337-6c08-4685-8142-be7f525b7b4a.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_unknown.logol.eb63d337-6c08-4685-8142-be7f525b7b4a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_unknown.logol.eb63d337-6c08-4685-8142-be7f525b7b4a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/morphism.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.logol.811e6973-f290-4721-9865-9cbae67ad422.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.logol.811e6973-f290-4721-9865-9cbae67ad422.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.logol.811e6973-f290-4721-9865-9cbae67ad422.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/or_condition2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition2.logol.73cc353f-53e4-43ab-b58a-578e1b02145f.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition2.logol.73cc353f-53e4-43ab-b58a-578e1b02145f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition2.logol.73cc353f-53e4-43ab-b58a-578e1b02145f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/comment.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment.logol.9174a6f1-2262-4cc2-905f-289905261cd8.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment.logol.9174a6f1-2262-4cc2-905f-289905261cd8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment.logol.9174a6f1-2262-4cc2-905f-289905261cd8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/variable.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR8)==>"aaa","acgt":{_LOGOLVAR9%R1%},?LOGOLVAR9%R1% [junit] mod1(LOGOLVAR10)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/variable.lgd.9370647b-f848-4f5c-9c51-4b7fb1fad90d.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.lgd.9370647b-f848-4f5c-9c51-4b7fb1fad90d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.lgd.9370647b-f848-4f5c-9c51-4b7fb1fad90d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.lgd.9370647b-f848-4f5c-9c51-4b7fb1fad90d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model2.logol.2b53e17b-37f2-4414-acc2-699791da358b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model2.logol.2b53e17b-37f2-4414-acc2-699791da358b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model2.logol.2b53e17b-37f2-4414-acc2-699791da358b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model3.logol.6cd6ff21-0646-416b-a286-263c3ce530de.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model3.logol.6cd6ff21-0646-416b-a286-263c3ce530de.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model3.logol.6cd6ff21-0646-416b-a286-263c3ce530de.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model4.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model4.logol.b8187df0-214f-405e-9157-17b4f2b6fdf6.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model4.logol.b8187df0-214f-405e-9157-17b4f2b6fdf6.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model4.logol.b8187df0-214f-405e-9157-17b4f2b6fdf6.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat0.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat0.logol.cad0dbc0-e275-4441-97ef-6ba59fa7441f.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat0.logol.cad0dbc0-e275-4441-97ef-6ba59fa7441f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat0.logol.cad0dbc0-e275-4441-97ef-6ba59fa7441f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/reverse.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/reverse.logol.e540bb64-4374-4b3d-ae15-ffae728365ad.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/reverse.logol.e540bb64-4374-4b3d-ae15-ffae728365ad.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/reverse.logol.e540bb64-4374-4b3d-ae15-ffae728365ad.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_postcontent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent_witherror.logol.0544c3e5-56aa-420d-bac1-cb99d7000892.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent_witherror.logol.0544c3e5-56aa-420d-bac1-cb99d7000892.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent_witherror.logol.0544c3e5-56aa-420d-bac1-cb99d7000892.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewitherroranddistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherroranddistance.logol.b0448282-6e51-4f72-812b-1698f2000066.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherroranddistance.logol.b0448282-6e51-4f72-812b-1698f2000066.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherroranddistance.logol.b0448282-6e51-4f72-812b-1698f2000066.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/complex.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complex.logol.e65c3d7e-174a-4f3b-aa0a-e0a39ec71e0a.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complex.logol.e65c3d7e-174a-4f3b-aa0a-e0a39ec71e0a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complex.logol.e65c3d7e-174a-4f3b-aa0a-e0a39ec71e0a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewithdistance2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance2.logol.b2f20d8f-70b1-4838-9973-7e22c7c5ed25.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance2.logol.b2f20d8f-70b1-4838-9973-7e22c7c5ed25.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance2.logol.b2f20d8f-70b1-4838-9973-7e22c7c5ed25.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_postcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent.logol.ecafc8bc-842b-4c09-97f7-406b2ec5bb55.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent.logol.ecafc8bc-842b-4c09-97f7-406b2ec5bb55.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent.logol.ecafc8bc-842b-4c09-97f7-406b2ec5bb55.0-41-all.xml [junit] cgttttgggg [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/multiple_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/multiple_model.logol.8a8c9e22-e5fc-43f8-a900-696a375cf1fe.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/multiple_model.logol.8a8c9e22-e5fc-43f8-a900-696a375cf1fe.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/multiple_model.logol.8a8c9e22-e5fc-43f8-a900-696a375cf1fe.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.2c9255ec-7dbc-4e35-8510-ff7bf226995d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.2c9255ec-7dbc-4e35-8510-ff7bf226995d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.2c9255ec-7dbc-4e35-8510-ff7bf226995d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.2c9255ec-7dbc-4e35-8510-ff7bf226995d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/begin.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR10)==>"aaaa",.*,LOGOLVAR11%X1%:{@[10,12],#[2,8]} [junit] mod1(LOGOLVAR12)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/begin.lgd.4d7794e9-de36-4e06-8550-4a185c346fa1.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.lgd.4d7794e9-de36-4e06-8550-4a185c346fa1.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.lgd.4d7794e9-de36-4e06-8550-4a185c346fa1.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.lgd.4d7794e9-de36-4e06-8550-4a185c346fa1.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.79e87bd1-2291-46e6-ae52-d963bedb6774.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.79e87bd1-2291-46e6-ae52-d963bedb6774.reverse.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.79e87bd1-2291-46e6-ae52-d963bedb6774.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.79e87bd1-2291-46e6-ae52-d963bedb6774.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/mycost.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/mycost.logol.a30cecae-10c9-4065-9d9b-fbb3260d2554.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/mycost.logol.a30cecae-10c9-4065-9d9b-fbb3260d2554.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/mycost.logol.a30cecae-10c9-4065-9d9b-fbb3260d2554.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/morphism.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR12)==>"aaa",+"wc" "tgca" [junit] mod1(LOGOLVAR13)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/morphism.lgd.af7622c8-44cc-46cc-890f-768b6010f8e1.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.lgd.af7622c8-44cc-46cc-890f-768b6010f8e1.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.lgd.af7622c8-44cc-46cc-890f-768b6010f8e1.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.lgd.af7622c8-44cc-46cc-890f-768b6010f8e1.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat.logol.6e6b74ca-479a-44e4-9c77-8d1f1420da16.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat.logol.6e6b74ca-479a-44e4-9c77-8d1f1420da16.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat.logol.6e6b74ca-479a-44e4-9c77-8d1f1420da16.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_witherror2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror2.logol.be84491b-efed-49dd-91f4-2b42fccf4ee0.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror2.logol.be84491b-efed-49dd-91f4-2b42fccf4ee0.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror2.logol.be84491b-efed-49dd-91f4-2b42fccf4ee0.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/external2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external2.logol.dedd6791-1a8c-46ac-ab0f-5c78c0cb89ac.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external2.logol.dedd6791-1a8c-46ac-ab0f-5c78c0cb89ac.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external2.logol.dedd6791-1a8c-46ac-ab0f-5c78c0cb89ac.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_interspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_interspacer.logol.07fcf357-9609-4238-a7e7-f8faececc2e4.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_interspacer.logol.07fcf357-9609-4238-a7e7-f8faececc2e4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_interspacer.logol.07fcf357-9609-4238-a7e7-f8faececc2e4.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/notview.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notview.logol.d633a18a-9d9e-4719-a035-03449e187577.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notview.logol.d633a18a-9d9e-4719-a035-03449e187577.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notview.logol.d633a18a-9d9e-4719-a035-03449e187577.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_anyspacer.logol.5e243baf-4fa2-49ca-826e-814753013e9a.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_anyspacer.logol.5e243baf-4fa2-49ca-826e-814753013e9a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_anyspacer.logol.5e243baf-4fa2-49ca-826e-814753013e9a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/notrepeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notrepeat.logol.0dd4b382-0b45-443f-8e2d-86fd1ff0ed81.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notrepeat.logol.0dd4b382-0b45-443f-8e2d-86fd1ff0ed81.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notrepeat.logol.0dd4b382-0b45-443f-8e2d-86fd1ff0ed81.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/or_condition.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition.logol.a01ffe52-efef-4023-9ede-4e1c881c77ae.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition.logol.a01ffe52-efef-4023-9ede-4e1c881c77ae.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition.logol.a01ffe52-efef-4023-9ede-4e1c881c77ae.0-41-all.xml [junit] ------------- ---------------- --------------- [junit] ------------- Standard Error ----------------- [junit] log4j:ERROR setFile(null,true) call failed. [junit] java.io.FileNotFoundException: /var/log/logol/logol.log (No such file or directory) [junit] at java.base/java.io.FileOutputStream.open0(Native Method) [junit] at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298) [junit] at java.base/java.io.FileOutputStream.(FileOutputStream.java:237) [junit] at java.base/java.io.FileOutputStream.(FileOutputStream.java:158) [junit] at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) [junit] at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) [junit] at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) [junit] at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) [junit] at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) [junit] at org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) [junit] at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) [junit] at org.apache.log4j.LogManager.(LogManager.java:127) [junit] at org.apache.log4j.Logger.getLogger(Logger.java:117) [junit] at org.irisa.genouest.logol.test.GrammarTest.(Unknown Source) [junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) [junit] at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [junit] at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490) [junit] at org.junit.runners.BlockJUnit4ClassRunner.createTest(BlockJUnit4ClassRunner.java:217) [junit] at org.junit.runners.BlockJUnit4ClassRunner$1.runReflectiveCall(BlockJUnit4ClassRunner.java:266) [junit] at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) [junit] at org.junit.runners.BlockJUnit4ClassRunner.methodBlock(BlockJUnit4ClassRunner.java:268) [junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78) [junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57) [junit] at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290) [junit] at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71) [junit] at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288) [junit] at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58) [junit] at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268) [junit] at org.junit.runners.ParentRunner.run(ParentRunner.java:363) [junit] at junit.framework.JUnit4TestAdapter.run(JUnit4TestAdapter.java:38) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:534) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:1196) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:1041) [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] ------------- ---------------- --------------- [junit] Testcase: testAmbiguous(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch2(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch3(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is BUILD SUCCESSFUL Total time: 36 minutes 27 seconds mkdir -p test/tmp test/results ant -f build.xml doc Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. doc: [exec] This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex) [exec] restricted \write18 enabled. 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[exec] [18] (./logol.aux) [exec] [exec] Package rerunfilecheck Warning: File `logol.out' has changed. [exec] (rerunfilecheck) Rerun to get outlines right [exec] (rerunfilecheck) or use package `bookmark'. [exec] [exec] [exec] LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. [exec] [exec] ) [exec] (see the transcript file for additional information){/usr/share/texlive/texmf-d [exec] ist/fonts/enc/dvips/base/8r.enc} [exec] Output written on logol.pdf (18 pages, 88878 bytes). [exec] Transcript written on logol.log. BUILD SUCCESSFUL Total time: 1 minute 24 seconds rm -f prolog/process.so chrpath -d prolog/logol.exe chrpath -d prolog/preanalyse.exe make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rm -f debian/logol/usr/share/logol/prolog/*.c rm -f debian/logol/usr/share/logol/prolog/*.exe rm -f debian/logol/usr/share/logol/prolog/logol.properties rm -f debian/logol/usr/share/logol/tools/*.keep_old_script if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi if [ ! -e debian/logol-bin/usr/share/logol/prolog ]; then mkdir -p debian/logol-bin/usr/share/logol/prolog; fi ln -s /usr/lib/swi-prolog/lib/riscv64-linux/process.so debian/logol-bin/usr/share/logol/prolog/process.so make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' rm -f test/tmp/* rm -f test/results/* dh_installexamples make[1]: Leaving directory '/<>' dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dwz: debian/logol-bin/usr/lib/logol/logol.exe: .debug_info section not present dwz: debian/logol-bin/usr/lib/logol/preanalyse.exe: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). debian/rules override_dh_strip make[1]: Entering directory '/<>' dh_strip -Xlogol.exe -Xpreanalyse.exe make[1]: Leaving directory '/<>' dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 pkgstriptranslations: processing logol-bin (in debian/logol-bin); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/logol-bin/DEBIAN/control, package logol-bin, directory debian/logol-bin pkgstripfiles: Truncating usr/share/doc/logol-bin/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package logol-bin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'logol-bin' in '../logol-bin_1.7.9-2_riscv64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../logol_1.7.9-2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-04T21:09:27Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ logol_1.7.9-2_riscv64.changes: ------------------------------ Format: 1.8 Date: Sun, 23 Feb 2020 17:58:32 +0100 Source: logol Binary: logol-bin Architecture: riscv64 Version: 1.7.9-2 Distribution: focal Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: logol-bin - Pattern matching tool using Logol language Closes: 952294 Changes: logol (1.7.9-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Do not try to install Doc/logolParser.pdf since the according LaTeX file does not build any more Closes: #952294 Checksums-Sha1: 2d61c6a76bcdc96dcafb258862dfe9af9c3b72de 146756 logol-bin_1.7.9-2_riscv64.deb f60907c49e6c2fcc11b99f62c254f83bf5daac60 11046 logol_1.7.9-2_riscv64.buildinfo Checksums-Sha256: a6c66217db8c9d697ad6e8adf13a3ea9475dfc37d91e3663c4eb771fcfa85ceb 146756 logol-bin_1.7.9-2_riscv64.deb da98750e3301e5f94f6ea4548231bfab9c429df8a874e1a4978640df4a7360f3 11046 logol_1.7.9-2_riscv64.buildinfo Files: b0859f4b791398e35ad8f7b9fe52716b 146756 science optional logol-bin_1.7.9-2_riscv64.deb c587cc6a5205d4aabccecd1f42e2d780 11046 science optional logol_1.7.9-2_riscv64.buildinfo /<>/logol_1.7.9-2_riscv64.changes.new could not be renamed to /<>/logol_1.7.9-2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: logol Binary: logol logol-bin Architecture: riscv64 Version: 1.7.9-2 Checksums-Md5: b0859f4b791398e35ad8f7b9fe52716b 146756 logol-bin_1.7.9-2_riscv64.deb Checksums-Sha1: 2d61c6a76bcdc96dcafb258862dfe9af9c3b72de 146756 logol-bin_1.7.9-2_riscv64.deb Checksums-Sha256: a6c66217db8c9d697ad6e8adf13a3ea9475dfc37d91e3663c4eb771fcfa85ceb 146756 logol-bin_1.7.9-2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sat, 04 Apr 2020 21:09:16 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: ant (= 1.10.7-1), ant-optional (= 1.10.7-1), antlr3 (= 3.5.2-9), autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu4), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-5ubuntu1), binutils-common (= 2.34-5ubuntu1), binutils-riscv64-linux-gnu (= 2.34-5ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu8), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-2), ca-certificates (= 20190110ubuntu1), ca-certificates-java (= 20190405ubuntu1), cassiopee (= 1.0.9-2build1), chrpath (= 0.16-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-8ubuntu1), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.10ubuntu1), debianutils (= 4.9.1), default-jdk (= 2:1.11-72), default-jdk-headless (= 2:1.11-72), default-jre (= 2:1.11-72), default-jre-headless (= 2:1.11-72), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), fontconfig-config (= 2.13.1-2ubuntu2), fonts-dejavu-core (= 2.37-1), fonts-lmodern (= 2.004.5-6), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-8ubuntu1), gawk (= 1:5.0.1+dfsg-1), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10-20200324-1ubuntu1), gcc-9 (= 9.3.0-8ubuntu1), gcc-9-base (= 9.3.0-8ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-4build1), gzip (= 1.10-0ubuntu4), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), java-common (= 0.72), junit4 (= 4.12-8), libacl1 (= 2.2.53-6), libactivation-java (= 1.2.0-2), libantlr3-runtime-java (= 3.5.2-9), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.67-2), libarchive13 (= 3.4.0-1ubuntu2), libasound2 (= 1.2.2-2.1), libasound2-data (= 1.2.2-2.1), libatomic1 (= 10-20200324-1ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libavahi-client3 (= 0.7-4ubuntu6), libavahi-common-data (= 0.7-4ubuntu6), libavahi-common3 (= 0.7-4ubuntu6), libbinutils (= 2.34-5ubuntu1), libbiojava-java (= 1:1.7.1-8), libbiojava1.7-java (= 1:1.7.1-8), libblkid1 (= 2.34-0.1ubuntu8), libboost-serialization1.71.0 (= 1.71.0-6ubuntu5+riscv64.1), libbsd-dev (= 0.10.0-1), libbsd0 (= 0.10.0-1), libbytecode-java (= 0.92.svn.20090106-2), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu7), libc-dev-bin (= 2.31-0ubuntu7), libc6 (= 2.31-0ubuntu7), libc6-dev (= 2.31-0ubuntu7), libcairo2 (= 1.16.0-4ubuntu1), libcap-ng0 (= 0.7.9-2.1build1), libcassie1v5 (= 1.0.9-2build1), libcc1-0 (= 10-20200324-1ubuntu1), libcom-err2 (= 1.45.5-2ubuntu1), libcommons-cli-java (= 1.4-1), libcommons-collections3-java (= 3.2.2-2), libcommons-configuration-java (= 1.10-5), libcommons-dbcp-java (= 1.4-6), libcommons-lang-java (= 2.6-9), libcommons-logging-java (= 1.2-2), libcommons-parent-java (= 43-1), libcommons-pool-java (= 1.6-3), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10ubuntu4), libcrypt1 (= 1:4.4.10-10ubuntu4), libctf-nobfd0 (= 2.34-5ubuntu1), libctf0 (= 2.34-5ubuntu1), libcups2 (= 2.3.1-9ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdbus-1-3 (= 1.12.16-2ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 12.10ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libdrm-common (= 2.4.100-4), libdrm-nouveau2 (= 2.4.100-4), libdrm-radeon1 (= 2.4.100-4), libdrm2 (= 2.4.100-4), libedit-dev (= 3.1-20191231-1), libedit2 (= 3.1-20191231-1), libelf1 (= 0.176-1.1build1), libexpat1 (= 2.2.9-1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.6.3-2), libfontbox-java (= 1:1.8.16-2), libfontconfig1 (= 2.13.1-2ubuntu2), libfreetype6 (= 2.10.1-2), libgcc-9-dev (= 9.3.0-8ubuntu1), libgcc-s1 (= 10-20200324-1ubuntu1), libgcc1 (= 1:10-20200324-1ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgflags2.2 (= 2.2.2-1build1), libgif7 (= 5.1.9-1), libgl1 (= 1.3.1-1), libgl1-mesa-dri (= 20.0.2-1ubuntu1), libglapi-mesa (= 20.0.2-1ubuntu1), libglib2.0-0 (= 2.64.1-1), libglvnd0 (= 1.3.1-1), libglx-mesa0 (= 20.0.2-1ubuntu1), libglx0 (= 1.3.1-1), libgmp-dev (= 2:6.2.0+dfsg-4), libgmp10 (= 2:6.2.0+dfsg-4), libgmpxx4ldbl (= 2:6.2.0+dfsg-4), libgnutls30 (= 3.6.11.1-2ubuntu2), libgomp1 (= 10-20200324-1ubuntu1), libgoogle-glog0v5 (= 0.4.0-1build1), libgpg-error0 (= 1.37-1), libgraphite2-3 (= 1.3.13-11build1), libgssapi-krb5-2 (= 1.17-6ubuntu4), libhamcrest-java (= 1.3-9), libharfbuzz-icu0 (= 2.6.4-1ubuntu2+riscv64.1), libharfbuzz0b (= 2.6.4-1ubuntu2+riscv64.1), libhogweed5 (= 3.5.1+really3.5.1-2), libhsqldb-java (= 2.5.0-1build2), libice6 (= 2:1.0.10-0ubuntu1), libicu66 (= 66.1-2ubuntu2), libidn2-0 (= 2.2.0-2), libisl22 (= 0.22.1-1), libjaxp1.3-java (= 1.3.05-5), libjpeg-turbo8 (= 2.0.3-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjs-jquery (= 3.3.1~dfsg-3), libk5crypto3 (= 1.17-6ubuntu4), libkeyutils1 (= 1.6-6ubuntu1), libkpathsea6 (= 2019.20190605.51237-3build2), libkrb5-3 (= 1.17-6ubuntu4), libkrb5support0 (= 1.17-6ubuntu4), liblcms2-2 (= 2.9-4), liblog4j1.2-java (= 1.2.17-9), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmail-java (= 1.6.2-1), libmount1 (= 2.34-0.1ubuntu8), libmpc3 (= 1.1.0-1), libmpdec2 (= 2.4.2-3), libmpfr6 (= 4.0.2-1), libncurses-dev (= 6.2-0ubuntu2), libncurses6 (= 6.2-0ubuntu2), libncursesw6 (= 6.2-0ubuntu2), libnettle7 (= 3.5.1+really3.5.1-2), libnspr4 (= 2:4.25-1), libnss3 (= 2:3.49.1-1ubuntu1), libossp-uuid16 (= 1.6.2-1.5build7), libp11-kit0 (= 0.23.20-1build1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libpcsclite1 (= 1.8.26-3), libpdfbox-java (= 1:1.8.16-2), libperl5.30 (= 5.30.0-9build1), libpipeline1 (= 1.5.2-2build1), libpixman-1-0 (= 0.38.4-0ubuntu1), libpng16-16 (= 1.6.37-2), libptexenc1 (= 2019.20190605.51237-3build2), libpython3-stdlib (= 3.8.2-0ubuntu2), libpython3.8-minimal (= 3.8.2-1ubuntu1), libpython3.8-stdlib (= 3.8.2-1ubuntu1), libreadline-dev (= 8.0-4), libreadline8 (= 8.0-4), libruby2.7 (= 2.7.0-4+riscv64.1), libselinux1 (= 3.0-1build2), libsensors-config (= 1:3.6.0-2ubuntu1), libsensors5 (= 1:3.6.0-2ubuntu1), libservlet-api-java (= 4.0.1-2), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.34-0.1ubuntu8), libsqlite3-0 (= 3.31.1-4), libssl1.1 (= 1.1.1d-2ubuntu6), libstdc++-9-dev (= 9.3.0-8ubuntu1), libstdc++6 (= 10-20200324-1ubuntu1), libstringtemplate4-java (= 4.0.8-2), libsub-override-perl (= 0.09-2), libsynctex2 (= 2019.20190605.51237-3build2), libsystemd0 (= 244.3-1ubuntu1), libtasn1-6 (= 4.16.0-2), libteckit0 (= 2.5.8+ds2-5ubuntu2), libtexlua53 (= 2019.20190605.51237-3build2), libtinfo6 (= 6.2-0ubuntu2), libtool (= 2.4.6-13), libuchardet0 (= 0.0.6-3build1), libudev1 (= 244.3-1ubuntu1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu8), libx11-6 (= 2:1.6.9-2ubuntu1), libx11-data (= 2:1.6.9-2ubuntu1), libx11-xcb1 (= 2:1.6.9-2ubuntu1), libxalan2-java (= 2.7.2-2), libxau6 (= 1:1.0.9-0ubuntu1), libxaw7 (= 2:1.0.13-1), libxcb-dri2-0 (= 1.14-2), libxcb-dri3-0 (= 1.14-2), libxcb-glx0 (= 1.14-2), libxcb-present0 (= 1.14-2), libxcb-render0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb-sync1 (= 1.14-2), libxcb1 (= 1.14-2), libxdamage1 (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxerces2-java (= 2.12.1-1), libxext6 (= 2:1.3.4-0ubuntu1), libxfixes3 (= 1:5.0.3-1), libxft2 (= 2.3.3-0ubuntu1), libxi6 (= 2:1.7.10-0ubuntu1), libxinerama1 (= 2:1.1.4-2), libxml-commons-external-java (= 1.4.01-3), libxml-commons-resolver1.1-java (= 1.2-9), libxml2 (= 2.9.10+dfsg-4build1), libxmu6 (= 2:1.1.3-0ubuntu1), libxpm4 (= 1:3.5.12-1), libxrender1 (= 1:0.9.10-1), libxshmfence1 (= 1.3-1), libxt6 (= 1:1.1.5-1), libxtst6 (= 2:1.2.3-1), libxxf86vm1 (= 1:1.1.4-1build1), libyaml-0-2 (= 0.2.2-1), libzstd1 (= 1.4.4+dfsg-3), libzzip-0-13 (= 0.13.62-3.2ubuntu1), linux-libc-dev (= 5.4.0-21.25), login (= 1:4.8.1-1ubuntu3), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), mime-support (= 3.64ubuntu1), ncurses-base (= 6.2-0ubuntu2), ncurses-bin (= 6.2-0ubuntu2), openjdk-11-jdk (= 11.0.7+9-1ubuntu1), openjdk-11-jdk-headless (= 11.0.7+9-1ubuntu1), openjdk-11-jre (= 11.0.7+9-1ubuntu1), openjdk-11-jre-headless (= 11.0.7+9-1ubuntu1), openssl (= 1.1.1d-2ubuntu6), patch (= 2.7.6-6), perl (= 5.30.0-9build1), perl-base (= 5.30.0-9build1), perl-modules-5.30 (= 5.30.0-9build1), po-debconf (= 1.0.21), preview-latex-style (= 11.91-2ubuntu2), python3 (= 3.8.2-0ubuntu2), python3-minimal (= 3.8.2-0ubuntu2), python3.8 (= 3.8.2-1ubuntu1), python3.8-minimal (= 3.8.2-1ubuntu1), rake (= 13.0.1-2), readline-common (= 8.0-4), ruby (= 1:2.7), ruby-cassiopee (= 0.1.13-1), ruby-did-you-mean (= 1.2.1-1), ruby-minitest (= 5.13.0-1), ruby-net-telnet (= 0.1.1-2), ruby-power-assert (= 1.1.7-1), ruby-test-unit (= 3.3.4-1), ruby-text (= 1.3.0-1), ruby-xmlrpc (= 0.3.0-2), ruby2.7 (= 2.7.0-4+riscv64.1), rubygems-integration (= 1.16), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), swi-prolog (= 7.6.4+dfsg-2ubuntu2), swi-prolog-nox (= 7.6.4+dfsg-2ubuntu2), swi-prolog-x (= 7.6.4+dfsg-2ubuntu2), sysvinit-utils (= 2.96-2.1ubuntu1), t1utils (= 1.41-3), tar (= 1.30+dfsg-7), tex-common (= 6.13), texlive (= 2019.20200218-1), texlive-base (= 2019.20200218-1), texlive-binaries (= 2019.20190605.51237-3build2), texlive-fonts-recommended (= 2019.20200218-1), texlive-latex-base (= 2019.20200218-1), texlive-latex-extra (= 2019.202000218-1), texlive-latex-recommended (= 2019.20200218-1), texlive-pictures (= 2019.20200218-1), texlive-plain-generic (= 2019.202000218-1), tzdata (= 2019c-3ubuntu1), ucf (= 3.0038+nmu1), util-linux (= 2.34-0.1ubuntu8), x11-common (= 1:7.7+19ubuntu14), xdg-utils (= 1.1.3-2ubuntu1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1582477112" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ logol-bin_1.7.9-2_riscv64.deb ----------------------------- new Debian package, version 2.0. size 146756 bytes: control archive=912 bytes. 832 bytes, 19 lines control 339 bytes, 5 lines md5sums Package: logol-bin Source: logol Version: 1.7.9-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 961 Depends: libc6 (>= 2.27), swi-prolog-nox (>= 7.6.4+dfsg~), swi-prolog-nox (<< 7.6.4+dfsg.0~), swi-prolog Section: science Priority: optional Homepage: http://logol.genouest.org Description: Pattern matching tool using Logol language This package contains the Prolog binaries used by Logol to parse the sequence and match the grammar. . Logol is a pattern matching tool using the Logol language. It searches with a specific grammar a pattern in small or large sequences (DNA, RNA, protein). It provides complete result matching with the original grammar in the results. drwxr-xr-x root/root 0 2020-02-23 16:58 ./ drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/ drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/lib/logol/ -rwxr-xr-x root/root 481224 2020-02-23 16:58 ./usr/lib/logol/logol.exe -rwxr-xr-x root/root 481024 2020-02-23 16:58 ./usr/lib/logol/preanalyse.exe drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/share/ drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/share/doc/logol-bin/ -rw-r--r-- root/root 964 2020-02-23 16:58 ./usr/share/doc/logol-bin/changelog.Debian.gz -rw-r--r-- root/root 1355 2020-02-23 16:58 ./usr/share/doc/logol-bin/copyright drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 222 2020-02-23 16:58 ./usr/share/lintian/overrides/logol-bin drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/share/logol/ drwxr-xr-x root/root 0 2020-02-23 16:58 ./usr/share/logol/prolog/ lrwxrwxrwx root/root 0 2020-02-23 16:58 ./usr/share/logol/prolog/logol.exe -> ../../../lib/logol/logol.exe lrwxrwxrwx root/root 0 2020-02-23 16:58 ./usr/share/logol/prolog/preanalyse.exe -> ../../../lib/logol/preanalyse.exe lrwxrwxrwx root/root 0 2020-02-23 16:58 ./usr/share/logol/prolog/process.so -> ../../../lib/swi-prolog/lib/riscv64-linux/process.so +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 9220 Build-Time: 2498 Distribution: focal Host Architecture: riscv64 Install-Time: 1183 Job: logol_1.7.9-2.dsc Machine Architecture: riscv64 Package: logol Package-Time: 3732 Source-Version: 1.7.9-2 Space: 9220 Status: successful Version: 1.7.9-2 -------------------------------------------------------------------------------- Finished at 2020-04-04T21:09:27Z Build needed 01:02:12, 9220k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19107115 Scanning for processes to kill in build PACKAGEBUILD-19107115 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19107115 Stopping target for build PACKAGEBUILD-19107115 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19107115 Removing build PACKAGEBUILD-19107115