RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux twombly 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Buildd toolchain package versions: launchpad-buildd_125 python-lpbuildd_125 dpkg-dev_1.17.5ubuntu5.3. Syncing the system clock with the buildd NTP service... 25 Oct 11:29:08 ntpdate[8464]: adjust time server 10.211.37.1 offset -0.021784 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6496502', '/home/buildd/filecache-default/bf5dfa8cbd68df3e6a087b8c18a4893dff1c36e4'] Unpacking chroot for build PACKAGEBUILD-6496502 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6496502'] Mounting chroot for build PACKAGEBUILD-6496502 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6496502', 'deb http://ftpmaster.internal/ubuntu vivid main universe', 'deb http://ftpmaster.internal/ubuntu vivid-security main universe', 'deb http://ftpmaster.internal/ubuntu vivid-updates main universe', 'deb http://ftpmaster.internal/ubuntu vivid-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6496502 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6496502', 'arm64'] Updating debian chroot for build PACKAGEBUILD-6496502 Ign http://ftpmaster.internal vivid InRelease Ign http://archive-team.internal vivid InRelease Ign http://ftpmaster.internal vivid-security InRelease Ign http://archive-team.internal vivid Release.gpg Ign http://ftpmaster.internal vivid-updates InRelease Get:1 http://archive-team.internal vivid Release [728 B] Ign http://ftpmaster.internal vivid-proposed InRelease Get:2 http://ftpmaster.internal vivid Release.gpg [933 B] Get:3 http://ftpmaster.internal vivid-security Release.gpg [933 B] Get:4 http://ftpmaster.internal vivid-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal vivid-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal vivid Release [112 kB] Get:7 http://archive-team.internal vivid/main arm64 Packages Ign http://archive-team.internal vivid/main Translation-en Get:8 http://ftpmaster.internal vivid-security Release [59.7 kB] Get:9 http://ftpmaster.internal vivid-updates Release [59.7 kB] Get:10 http://ftpmaster.internal vivid-proposed Release [59.7 kB] Get:11 http://ftpmaster.internal vivid/main arm64 Packages [1276 kB] Get:12 http://ftpmaster.internal vivid/universe arm64 Packages [5885 kB] Get:13 http://ftpmaster.internal vivid/main Translation-en [769 kB] Get:14 http://ftpmaster.internal vivid/universe Translation-en [4275 kB] Get:15 http://ftpmaster.internal vivid-security/main arm64 Packages [14 B] Get:16 http://ftpmaster.internal vivid-security/universe arm64 Packages [14 B] Get:17 http://ftpmaster.internal vivid-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal vivid-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal vivid-updates/main arm64 Packages [14 B] Get:20 http://ftpmaster.internal vivid-updates/universe arm64 Packages [14 B] Get:21 http://ftpmaster.internal vivid-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal vivid-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal vivid-proposed/main arm64 Packages [17.3 kB] Get:24 http://ftpmaster.internal vivid-proposed/universe arm64 Packages [140 kB] Get:25 http://ftpmaster.internal vivid-proposed/main Translation-en [14.4 kB] Get:26 http://ftpmaster.internal vivid-proposed/universe Translation-en [178 kB] Fetched 12.9 MB in 10s (1196 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils ca-certificates cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base grep libacl1 libatomic1 libdb5.3 libdrm2 libgcc-4.9-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libplymouth4 libsasl2-2 libsasl2-modules-db libselinux1 libstdc++-4.9-dev libstdc++6 libsystemd-journal0 libtasn1-6 libudev1 libusb-0.1-4 plymouth tzdata udev 35 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB of archives. After this operation, 198 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main base-files arm64 7.2ubuntu8 [63.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main grep arm64 2.20-4 [131 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9-base arm64 4.9.1-19ubuntu1 [15.8 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++6 arm64 4.9.1-19ubuntu1 [257 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgomp1 arm64 4.9.1-19ubuntu1 [32.3 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libitm1 arm64 4.9.1-19ubuntu1 [26.2 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libatomic1 arm64 4.9.1-19ubuntu1 [6710 B] Get:8 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc-4.9-dev arm64 4.9.1-19ubuntu1 [185 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cpp-4.9 arm64 4.9.1-19ubuntu1 [3911 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid-proposed/main binutils arm64 2.24.90.20141023-1ubuntu1 [2370 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9 arm64 4.9.1-19ubuntu1 [4432 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid-proposed/main g++-4.9 arm64 4.9.1-19ubuntu1 [11.1 MB] Get:13 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++-4.9-dev arm64 4.9.1-19ubuntu1 [1100 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc1 arm64 1:4.9.1-19ubuntu1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main libgmp10 arm64 2:6.0.0+dfsg-6 [205 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main libusb-0.1-4 arm64 2:0.1.12-25 [14.6 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main libacl1 arm64 2.2.52-2 [14.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main libdb5.3 arm64 5.3.28-6 [562 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgpg-error0 arm64 1.17-2 [27.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main libselinux1 arm64 2.3-2 [50.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsystemd-journal0 arm64 215-5ubuntu1 [43.8 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main libtasn1-6 arm64 4.2-2 [37.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main libdrm2 arm64 2.4.58-2 [20.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main plymouth arm64 0.9.0-0ubuntu8 [87.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid-proposed/main udev arm64 215-5ubuntu1 [813 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libudev1 arm64 215-5ubuntu1 [28.8 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main libplymouth4 arm64 0.9.0-0ubuntu8 [70.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main libgssapi-krb5-2 arm64 1.12.1+dfsg-11 [97.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5-3 arm64 1.12.1+dfsg-11 [225 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5support0 arm64 1.12.1+dfsg-11 [27.8 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid/main libk5crypto3 arm64 1.12.1+dfsg-11 [78.2 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-modules-db arm64 2.1.26.dfsg1-12 [13.0 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-2 arm64 2.1.26.dfsg1-12 [41.9 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main tzdata all 2014i-1 [182 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main ca-certificates all 20141019 [192 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.5 MB in 13s (2014 kB/s) (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu8_arm64.deb ... Unpacking base-files (7.2ubuntu8) over (7.2ubuntu7) ... Setting up base-files (7.2ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../archives/grep_2.20-4_arm64.deb ... Unpacking grep (2.20-4) over (2.20-3) ... Setting up grep (2.20-4) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../gcc-4.9-base_4.9.1-19ubuntu1_arm64.deb ... Unpacking gcc-4.9-base:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up gcc-4.9-base:arm64 (4.9.1-19ubuntu1) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-19ubuntu1_arm64.deb ... Unpacking libstdc++6:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up libstdc++6:arm64 (4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libitm1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libatomic1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc-4.9-dev_4.9.1-19ubuntu1_arm64.deb ... Unpacking libgcc-4.9-dev:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../cpp-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking cpp-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../binutils_2.24.90.20141023-1ubuntu1_arm64.deb ... Unpacking binutils (2.24.90.20141023-1ubuntu1) over (2.24.90.20141014-0ubuntu3) ... Preparing to unpack .../gcc-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking gcc-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../g++-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking g++-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libstdc++-4.9-dev_4.9.1-19ubuntu1_arm64.deb ... Unpacking libstdc++-4.9-dev:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.1-19ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:4.9.1-19ubuntu1) over (1:4.9.1-16ubuntu6) ... Setting up libgcc1:arm64 (1:4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_arm64.deb ... Unpacking libgmp10:arm64 (2:6.0.0+dfsg-6) over (2:6.0.0+dfsg-4build1) ... Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-25_arm64.deb ... Unpacking libusb-0.1-4:arm64 (2:0.1.12-25) over (2:0.1.12-24) ... Setting up libusb-0.1-4:arm64 (2:0.1.12-25) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11388 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-2_arm64.deb ... Unpacking libacl1:arm64 (2.2.52-2) over (2.2.52-1.1) ... Setting up libacl1:arm64 (2.2.52-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11388 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-6_arm64.deb ... Unpacking libdb5.3:arm64 (5.3.28-6) over (5.3.28-5) ... Setting up libdb5.3:arm64 (5.3.28-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11388 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.17-2_arm64.deb ... Unpacking libgpg-error0:arm64 (1.17-2) over (1.13-4) ... Setting up libgpg-error0:arm64 (1.17-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11388 files and directories currently installed.) Preparing to unpack .../libselinux1_2.3-2_arm64.deb ... Unpacking libselinux1:arm64 (2.3-2) over (2.3-1build1) ... Setting up libselinux1:arm64 (2.3-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11388 files and directories currently installed.) Preparing to unpack .../libsystemd-journal0_215-5ubuntu1_arm64.deb ... Unpacking libsystemd-journal0:arm64 (215-5ubuntu1) over (208-8ubuntu8) ... Setting up libsystemd-journal0:arm64 (215-5ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11388 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.2-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.2-2) over (4.0-2) ... Preparing to unpack .../libdrm2_2.4.58-2_arm64.deb ... Unpacking libdrm2:arm64 (2.4.58-2) over (2.4.56-1) ... Preparing to unpack .../plymouth_0.9.0-0ubuntu8_arm64.deb ... Unpacking plymouth (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../udev_215-5ubuntu1_arm64.deb ... Unpacking udev (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libudev1_215-5ubuntu1_arm64.deb ... Unpacking libudev1:arm64 (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libplymouth4_0.9.0-0ubuntu8_arm64.deb ... Unpacking libplymouth4:arm64 (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-11_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-11_arm64.deb ... Unpacking libkrb5-3:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-11_arm64.deb ... Unpacking libkrb5support0:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-11_arm64.deb ... Unpacking libk5crypto3:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-12_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-12_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../tzdata_2014i-1_all.deb ... Unpacking tzdata (2014i-1) over (2014h-2) ... Setting up tzdata (2014i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 25 11:30:15 UTC 2014. Universal Time is now: Sat Oct 25 11:30:15 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11393 files and directories currently installed.) Preparing to unpack .../ca-certificates_20141019_all.deb ... Unpacking ca-certificates (20141019) over (20140325) ... Setting up libgomp1:arm64 (4.9.1-19ubuntu1) ... Setting up libitm1:arm64 (4.9.1-19ubuntu1) ... Setting up libatomic1:arm64 (4.9.1-19ubuntu1) ... Setting up libgcc-4.9-dev:arm64 (4.9.1-19ubuntu1) ... Setting up libgmp10:arm64 (2:6.0.0+dfsg-6) ... Setting up cpp-4.9 (4.9.1-19ubuntu1) ... Setting up binutils (2.24.90.20141023-1ubuntu1) ... Setting up gcc-4.9 (4.9.1-19ubuntu1) ... Setting up libstdc++-4.9-dev:arm64 (4.9.1-19ubuntu1) ... Setting up g++-4.9 (4.9.1-19ubuntu1) ... Setting up libtasn1-6:arm64 (4.2-2) ... Setting up libdrm2:arm64 (2.4.58-2) ... Setting up libudev1:arm64 (215-5ubuntu1) ... Setting up libplymouth4:arm64 (0.9.0-0ubuntu8) ... Setting up udev (215-5ubuntu1) ... Installing new version of config file /etc/init.d/udev-finish ... calling: hwdb reading file '/lib/udev/hwdb.d/20-OUI.hwdb' reading file '/lib/udev/hwdb.d/20-acpi-vendor.hwdb' reading file '/lib/udev/hwdb.d/20-bluetooth-vendor-product.hwdb' reading file '/lib/udev/hwdb.d/20-net-ifname.hwdb' reading file '/lib/udev/hwdb.d/20-pci-classes.hwdb' reading file '/lib/udev/hwdb.d/20-pci-vendor-model.hwdb' reading file '/lib/udev/hwdb.d/20-sdio-classes.hwdb' reading file '/lib/udev/hwdb.d/20-sdio-vendor-model.hwdb' reading file '/lib/udev/hwdb.d/20-usb-classes.hwdb' reading file '/lib/udev/hwdb.d/20-usb-vendor-model.hwdb' reading file '/lib/udev/hwdb.d/60-keyboard.hwdb' === trie in-memory === nodes: 3670080 bytes ( 91752) children arrays: 1468016 bytes ( 91751) values arrays: 1113776 bytes ( 69611) strings: 1666046 bytes strings incoming: 3733012 bytes ( 218289) strings dedup'ed: 2128465 bytes ( 156791) === trie on-disk === size: 6449966 bytes header: 80 bytes nodes: 2202048 bytes ( 91752) child pointers: 1468016 bytes ( 91751) value pointers: 1113776 bytes ( 69611) string store: 1666046 bytes strings start: 4783920 A chroot environment has been detected, udev not started. update-initramfs: deferring update (trigger activated) Removing obsolete conffile /etc/udev/rules.d/README ... Setting up plymouth (0.9.0-0ubuntu8) ... update-initramfs: deferring update (trigger activated) Setting up libkrb5support0:arm64 (1.12.1+dfsg-11) ... Setting up libk5crypto3:arm64 (1.12.1+dfsg-11) ... Setting up libkrb5-3:arm64 (1.12.1+dfsg-11) ... Setting up libgssapi-krb5-2:arm64 (1.12.1+dfsg-11) ... Setting up libsasl2-modules-db:arm64 (2.1.26.dfsg1-12) ... Setting up libsasl2-2:arm64 (2.1.26.dfsg1-12) ... Setting up ca-certificates (20141019) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for initramfs-tools (0.103ubuntu8) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 10 added, 5 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6496502', 'arm64', 'vivid-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=vivid-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'lutefisk_1.0.7+dfsg-4.dsc'] Initiating build PACKAGEBUILD-6496502 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Automatic build of lutefisk_1.0.7+dfsg-4 on twombly by sbuild/arm64 1.170.5 Build started at 20141025-1130 ****************************************************************************** lutefisk_1.0.7+dfsg-4.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), dpkg-dev (>= 1.16.1.1) Checking for already installed source dependencies... debhelper: missing dpkg-dev: already installed (1.17.13ubuntu1 >= 1.16.1.1 is satisfied) Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 5924 kB of archives. After this operation, 22.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main libmagic1 arm64 1:5.19-1ubuntu1.1 [195 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main libasprintf0c2 arm64 0.19.2-2ubuntu1 [6314 B] Get:3 http://ftpmaster.internal/ubuntu/ vivid/main libglib2.0-0 arm64 2.42.0-2 [900 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main libpipeline1 arm64 1.3.1-1 [21.4 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main libxml2 arm64 2.9.1+dfsg1-4ubuntu1 [473 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main groff-base arm64 1.22.2-8 [1139 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid/main man-db arm64 2.7.0.2-2 [836 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main libcroco3 arm64 0.6.8-3 [67.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main libunistring0 arm64 0.9.3-5ubuntu3 [255 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main file arm64 1:5.19-1ubuntu1.1 [20.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main gettext-base arm64 0.19.2-2ubuntu1 [45.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid/main gettext arm64 0.19.2-2ubuntu1 [792 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main po-debconf all 1.0.16+nmu3 [207 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main dh-apparmor all 2.8.98-0ubuntu2 [11.0 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main debhelper all 9.20141003ubuntu1 [726 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5924 kB in 7s (777 kB/s) Selecting previously unselected package libmagic1:arm64. (Reading database ... 11398 files and directories currently installed.) Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1.1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.19-1ubuntu1.1) ... Selecting previously unselected package libasprintf0c2:arm64. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_arm64.deb ... Unpacking libasprintf0c2:arm64 (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../libglib2.0-0_2.42.0-2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.42.0-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../libpipeline1_1.3.1-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.3.1-1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../libxml2_2.9.1+dfsg1-4ubuntu1_arm64.deb ... Unpacking libxml2:arm64 (2.9.1+dfsg1-4ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-8_arm64.deb ... Unpacking groff-base (1.22.2-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_arm64.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.0.2-2_arm64.deb ... Unpacking man-db (2.7.0.2-2) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../libcroco3_0.6.8-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.8-3) ... Selecting previously unselected package libunistring0:arm64. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_arm64.deb ... Unpacking libunistring0:arm64 (0.9.3-5ubuntu3) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.19-1ubuntu1.1_arm64.deb ... Unpacking file (1:5.19-1ubuntu1.1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.2-2ubuntu1_arm64.deb ... Unpacking gettext-base (0.19.2-2ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.2-2ubuntu1_arm64.deb ... Unpacking gettext (0.19.2-2ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ... Unpacking po-debconf (1.0.16+nmu3) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.98-0ubuntu2_all.deb ... Unpacking dh-apparmor (2.8.98-0ubuntu2) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20141003ubuntu1_all.deb ... Unpacking debhelper (9.20141003ubuntu1) ... Setting up libmagic1:arm64 (1:5.19-1ubuntu1.1) ... Setting up libasprintf0c2:arm64 (0.19.2-2ubuntu1) ... Setting up libglib2.0-0:arm64 (2.42.0-2) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.3.1-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-4ubuntu1) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:arm64 (0.6.8-3) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu3) ... Setting up file (1:5.19-1ubuntu1.1) ... Setting up gettext-base (0.19.2-2ubuntu1) ... Setting up gettext (0.19.2-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.98-0ubuntu2) ... Setting up debhelper (9.20141003ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-10ubuntu2 make_4.0-8 dpkg-dev_1.17.13ubuntu1 gcc-4.9_4.9.1-19ubuntu1 g++-4.9_4.9.1-19ubuntu1 binutils_2.24.90.20141023-1ubuntu1 libstdc++-4.9-dev_4.9.1-19ubuntu1 libstdc++6_4.9.1-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Mon Aug 18 13:08:54 2014 UTC using RSA key ID 7694CF42 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./lutefisk_1.0.7+dfsg-4.dsc dpkg-source: info: extracting lutefisk in lutefisk-1.0.7+dfsg dpkg-source: info: unpacking lutefisk_1.0.7+dfsg.orig.tar.gz dpkg-source: info: unpacking lutefisk_1.0.7+dfsg-4.debian.tar.xz dpkg-source: info: applying build-flags dpkg-source: info: applying fix-html-doc-paragraph dpkg-source: info: applying fix-math-h-include-header dpkg-source: info: applying fix-global-definitions dpkg-source: info: applying improve-feedback-to-user dpkg-source: info: applying fix-pointer-stuff dpkg-buildpackage: source package lutefisk dpkg-buildpackage: source version 1.0.7+dfsg-4 dpkg-buildpackage: source distribution unstable dpkg-source --before-build lutefisk-1.0.7+dfsg dpkg-buildpackage: host architecture arm64 dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file /usr/bin/fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel debian/rules override_dh_clean make[1]: Entering directory '/build/buildd/lutefisk-1.0.7+dfsg' dh_clean rm -f debian/lutefisk.substvars rm -f debian/lutefisk.*.debhelper rm -rf debian/lutefisk/ rm -f debian/lutefisk-doc.substvars rm -f debian/lutefisk-doc.*.debhelper rm -rf debian/lutefisk-doc/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp rm -rf /build/buildd/lutefisk-1.0.7+dfsg/debian/build make[1]: Leaving directory '/build/buildd/lutefisk-1.0.7+dfsg' debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/buildd/lutefisk-1.0.7+dfsg' mkdir -p /build/buildd/lutefisk-1.0.7+dfsg/debian/build cp -rpf src/* /build/buildd/lutefisk-1.0.7+dfsg/debian/build ln -s /build/buildd/lutefisk-1.0.7+dfsg/debian/build/Makefile.linux /build/buildd/lutefisk-1.0.7+dfsg/debian/build/Makefile make[1]: Leaving directory '/build/buildd/lutefisk-1.0.7+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/buildd/lutefisk-1.0.7+dfsg' /usr/bin/make all -C /build/buildd/lutefisk-1.0.7+dfsg/debian/build make[2]: Entering directory '/build/buildd/lutefisk-1.0.7+dfsg/debian/build' gcc -O -D__LINUX -c LutefiskGlobalDeclarations.c gcc -O -D__LINUX -c LutefiskMain.c LutefiskMain.c: In function 'main': LutefiskMain.c:170:9: warning: format not a string literal and no format arguments [-Wformat-security] printf(versionString); ^ LutefiskMain.c: In function 'BuildPgmState': LutefiskMain.c:650:3: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] fprintf(stderr, "Argument filename max length = %d caracters", sizeof(gParam.outputFile) - 1 ); ^ LutefiskMain.c:659:3: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] fprintf(stderr, "Argument filename max length = %d caracters", sizeof(gParam.detailsFilename) - 1 ); ^ LutefiskMain.c:673:3: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] fprintf(stderr, "Argument filename max length = %d caracters", sizeof(gParam.paramFile) - 1 ); ^ LutefiskMain.c:688:3: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] fprintf(stderr, "Argument filename max length = %d caracters", sizeof(gParam.residuesFilename) - 1 ); ^ LutefiskMain.c:697:3: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] fprintf(stderr, "Argument filename max length = %d caracters", sizeof(gParam.databaseSequences) - 1 ); ^ LutefiskMain.c: In function 'ChangeOutputName': LutefiskMain.c:865:13: warning: embedded '\0' in format [-Wformat-contains-nul] sprintf(gParam.outputFile + strlen(gParam.outputFile), "%d\0", fileCount++); ^ LutefiskMain.c: In function 'SystemCheck': LutefiskMain.c:2536:9: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("REAL_4 is %d bytes instead of 4.\n", sizeof(REAL_4)); ^ LutefiskMain.c:2541:9: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("REAL_8 is %d bytes instead of 8.\n", sizeof(REAL_8)); ^ LutefiskMain.c:2546:9: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("INT_2 is %d bytes instead of 2.\n", sizeof(INT_2)); ^ LutefiskMain.c:2551:9: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("UINT_2 is %d bytes instead of 2.\n", sizeof(UINT_2)); ^ LutefiskMain.c:2556:9: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("INT_4 is %d bytes instead of 4.\n", sizeof(INT_4)); ^ LutefiskMain.c:2561:9: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("UINT_4 is %d bytes instead of 4.\n", sizeof(UINT_4)); ^ LutefiskMain.c:2566:9: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("CHAR is %d bytes instead of 1.\n", sizeof(CHAR)); ^ LutefiskMain.c:2571:9: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("BOOLEAN is %d bytes instead of 1.\n", sizeof(BOOLEAN)); ^ LutefiskMain.c: In function 'PrintHeaderToFile': LutefiskMain.c:2623:2: warning: format not a string literal and no format arguments [-Wformat-security] fprintf(fp, versionString); ^ LutefiskMain.c:2638:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] fprintf(fp, " Charge State: %2ld", gParam.chargeState); ^ LutefiskMain.c:2683:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] fprintf(fp, " Extension Number: %2ld", gParam.maxExtNum); ^ LutefiskMain.c:2684:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] fprintf(fp, "\n Gaps: %2ld", gParam.maxGapNum); ^ LutefiskMain.c:2686:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] fprintf(fp, " Data Threshold: %5.2f (%ld)", gParam.ionThreshold, gParam.intThreshold); ^ LutefiskMain.c: In function 'AdjustPeptideMW': LutefiskMain.c:3021:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] printf("%f using %ld ion pairs\n", gParam.peptideMW, maxPeptideNum + requiredPairs); ^ gcc -O -D__LINUX -c LutefiskGetCID.c LutefiskGetCID.c: In function 'GetCidData': LutefiskGetCID.c:411:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Number of ions: %ld \n", peakList->numObjects); ^ LutefiskGetCID.c: In function 'FindThreshold': LutefiskGetCID.c:4222:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Data points = %ld\n", numOfNonZeroPts); /*debug*/ ^ LutefiskGetCID.c: In function 'IonCondenser': LutefiskGetCID.c:4478:1: warning: format '%d' expects argument of type 'int', but argument 2 has type 'struct tMSDataList *' [-Wformat=] printf("pointer: %d\n", inMSDataList); ^ LutefiskGetCID.c: In function 'DumpMSData': LutefiskGetCID.c:4608:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("%ld %7.3f %ld\n", i, inList->mass[i].mOverZ, inList->mass[i].intensity); ^ LutefiskGetCID.c:4608:9: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -O -D__LINUX -c LutefiskHaggis.c LutefiskHaggis.c: In function 'Haggis': LutefiskHaggis.c:126:2: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Lutefisk sequences: %ld \n", lutefiskSequenceCount); ^ LutefiskHaggis.c:235:2: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Haggis sequences: %ld \n", gSequenceNum); ^ gcc -O -D__LINUX -c LutefiskMakeGraph.c gcc -O -D__LINUX -c LutefiskSummedNode.c gcc -O -D__LINUX -c LutefiskSubseqMaker.c gcc -O -D__LINUX -c LutefiskScore.c LutefiskScore.c: In function 'GetDatabaseSeq': LutefiskScore.c:281:2: warning: embedded '\0' in format [-Wformat-contains-nul] p+= sprintf(p, "\0"); /* NULL terminate the string */ ^ LutefiskScore.c: In function 'PeptideString': LutefiskScore.c:417:2: warning: embedded '\0' in format [-Wformat-contains-nul] p+= sprintf(p, "\0"); /* NULL terminate the string */ ^ LutefiskScore.c: In function 'AddDatabaseSequences': LutefiskScore.c:642:2: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("%ld database sequences added.\n", seqNum); ^ LutefiskScore.c: In function 'ExpandSequences': LutefiskScore.c:1421:3: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Sequences expanded to %5ld for qtof score.\n", countTheSeqs); ^ LutefiskScore.c: In function 'RemoveRedundantSequences': LutefiskScore.c:2462:3: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Scoring %4ld remaining after removing redundant sequences.\n", countTheSeqs); ^ LutefiskScore.c: In function 'InitLutefiskScore': LutefiskScore.c:3514:3: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Scoring %4ld completed sequences.\n", *countTheSeqs); ^ LutefiskScore.c: In function 'HighMOverZFilter': LutefiskScore.c:3925:3: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Scoring %5ld sequences after the high m/z filter.\n", *countTheSeqs); ^ LutefiskScore.c: In function 'TossTheLosers': LutefiskScore.c:4048:3: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Scoring %4ld sequences following the b and y filter.\n", *countTheSeqs); ^ LutefiskScore.c: In function 'PrintToConsoleAndFile': LutefiskScore.c:4571:10: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] maxPtr->crossDressingScore); ^ LutefiskScore.c:4577:10: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] maxPtr->crossDressingScore); ^ LutefiskScore.c:4634:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] maxPtr->crossDressingScore); ^ LutefiskScore.c:4640:9: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] maxPtr->crossDressingScore); ^ LutefiskScore.c:4989:4: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("\nStatistics based on %2ld wrong sequences:\n", gWrongIndex-1); ^ LutefiskScore.c:5005:3: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] fprintf(fp, "\nBased on %2ld wrong sequences\n", gWrongIndex); ^ LutefiskScore.c: In function 'PrintToConsole': LutefiskScore.c:5780:8: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] maxPtr->calFactor, peptideString); ^ LutefiskScore.c:5780:8: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'int' [-Wformat=] LutefiskScore.c:5826:8: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] maxPtr->calFactor, peptideString); ^ LutefiskScore.c:5826:8: warning: format '%ld' expects argument of type 'long int', but argument 9 has type 'int' [-Wformat=] LutefiskScore.c: In function 'RescoreAndPrune': LutefiskScore.c:9945:3: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Scoring %4ld sequences found for qtof scoring.\n", countTheSeqs); ^ LutefiskScore.c: In function 'PrintScoreDetailsToXLFile': LutefiskScore.c:11586:3: warning: embedded '\0' in format [-Wformat-contains-nul] sprintf(fileName + strlen(fileName), "%d\0", fileCount++); ^ LutefiskScore.c:11618:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] fprintf(fp, " Charge State: %2ld", gParam.chargeState); ^ LutefiskScore.c:11663:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] fprintf(fp, " Extension Number: %2ld", gParam.maxExtNum); ^ LutefiskScore.c:11664:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] fprintf(fp, "\n Gaps: %2ld", gParam.maxGapNum); ^ LutefiskScore.c:11666:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] fprintf(fp, " Data Threshold: %5.2f (%ld)", gParam.ionThreshold, gParam.intThreshold); ^ LutefiskScore.c:11776:8: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] maxPtr->calFactor, peptideString); ^ LutefiskScore.c:11776:8: warning: format '%ld' expects argument of type 'long int', but argument 10 has type 'int' [-Wformat=] gcc -O -D__LINUX -c LutefiskXCorr.c gcc -O -D__LINUX -c LutefiskFourier.c gcc -O -D__LINUX -c LutefiskGetAutoTag.c LutefiskGetAutoTag.c: In function 'GetAutoTag': LutefiskGetAutoTag.c:1913:4: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'int' [-Wformat=] printf("Auto-tag found %ld tags:\n", TagSeqList->numObjects); ^ LutefiskGetAutoTag.c: In function 'ComposePeptideString': LutefiskGetAutoTag.c:2021:2: warning: embedded '\0' in format [-Wformat-contains-nul] p+= sprintf(p, "\0"); /* NULL terminate the string */ ^ gcc -O -D__LINUX -c ListRoutines.c gcc -O LutefiskGlobalDeclarations.o LutefiskMain.o LutefiskGetCID.o LutefiskHaggis.o LutefiskMakeGraph.o LutefiskSummedNode.o LutefiskSubseqMaker.o LutefiskScore.o LutefiskXCorr.o LutefiskFourier.o LutefiskGetAutoTag.o ListRoutines.o -lm -o lutefisk make[2]: Leaving directory '/build/buildd/lutefisk-1.0.7+dfsg/debian/build' make[1]: Leaving directory '/build/buildd/lutefisk-1.0.7+dfsg' dh_auto_test -a -O--parallel /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel rm -f debian/lutefisk.substvars rm -f debian/lutefisk.*.debhelper rm -rf debian/lutefisk/ dh_installdirs -a -O--parallel install -d debian/lutefisk install -d debian/lutefisk/usr/bin dh_auto_install -a -O--parallel dh_install -a -O--parallel install -d debian/lutefisk/usr/share/lutefisk cp -a ./Lutefisk.details debian/lutefisk/usr/share/lutefisk/ cp -a ./Lutefisk.residues debian/lutefisk/usr/share/lutefisk/ cp -a ./debian/build/lutefisk debian/lutefisk/usr/bin/ dh_installdocs -a -O--parallel install -g 0 -o 0 -d debian/lutefisk/usr/share/doc/lutefisk install -g 0 -o 0 -m 644 -p debian/copyright debian/lutefisk/usr/share/doc/lutefisk/copyright debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/buildd/lutefisk-1.0.7+dfsg' dh_installchangelogs HISTORY.txt install -o 0 -g 0 -p -m644 debian/changelog debian/lutefisk/usr/share/doc/lutefisk/changelog.Debian install -o 0 -g 0 -p -m644 HISTORY.txt debian/lutefisk/usr/share/doc/lutefisk/changelog make[1]: Leaving directory '/build/buildd/lutefisk-1.0.7+dfsg' dh_installexamples -a -O--parallel install -d debian/lutefisk/usr/share/doc/lutefisk/examples cp -a database.sequence debian/lutefisk/usr/share/doc/lutefisk/examples cp -a Lutefisk.lcq_params debian/lutefisk/usr/share/doc/lutefisk/examples cp -a Lutefisk.qtof_params debian/lutefisk/usr/share/doc/lutefisk/examples cp -a Qtof_ELVISLIVESK.dta debian/lutefisk/usr/share/doc/lutefisk/examples cp -a Qtof_ELVISLIVESK.lut debian/lutefisk/usr/share/doc/lutefisk/examples dh_installman -a -O--parallel install -d debian/lutefisk/usr/share/man/man1/ install -p -m644 debian/lutefisk.1 debian/lutefisk/usr/share/man/man1/lutefisk.1 man --recode UTF-8 ./lutefisk\.1 > lutefisk\.1\.new chmod 644 lutefisk.1.new mv -f lutefisk.1.new lutefisk.1 dh_perl -a -O--parallel dh_link -a -O--parallel dh_compress -a -O--parallel cd debian/lutefisk chmod a-x usr/share/man/man1/lutefisk.1 usr/share/doc/lutefisk/changelog usr/share/doc/lutefisk/changelog.Debian usr/share/doc/lutefisk/examples/Lutefisk.qtof_params usr/share/doc/lutefisk/examples/Lutefisk.lcq_params usr/share/doc/lutefisk/examples/Qtof_ELVISLIVESK.dta gzip -9nf usr/share/man/man1/lutefisk.1 usr/share/doc/lutefisk/changelog usr/share/doc/lutefisk/changelog.Debian usr/share/doc/lutefisk/examples/Lutefisk.qtof_params usr/share/doc/lutefisk/examples/Lutefisk.lcq_params usr/share/doc/lutefisk/examples/Qtof_ELVISLIVESK.dta cd '/build/buildd/lutefisk-1.0.7+dfsg' dh_fixperms -a -O--parallel find debian/lutefisk -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/lutefisk ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lutefisk/usr/share/doc -type f ! -regex 'debian/lutefisk/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/lutefisk/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/lutefisk/usr/share/man debian/lutefisk/usr/man/ debian/lutefisk/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/lutefisk -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/lutefisk/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/lutefisk/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/lutefisk -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/lutefisk/usr/lib/aarch64-linux-gnu/perl5/5.20 debian/lutefisk/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/lutefisk/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/lutefisk/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip -a -O--parallel dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: lutefisk dh_strip debug symbol extraction: packages to act on: lutefisk dh_strip debug symbol extraction: ignored packages: lutefisk has no unstripped objects, ignoring find: `/build/buildd/lutefisk-1.0.7+dfsg/debian/lutefisk-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/lutefisk-1.0.7+dfsg/debian/lutefisk-dbgsym and no dbgdepends, ignoring strip --remove-section=.comment --remove-section=.note debian/lutefisk/usr/bin/lutefisk dh_makeshlibs -a -O--parallel rm -f debian/lutefisk/DEBIAN/shlibs dh_shlibdeps -a -O--parallel install -o 0 -g 0 -d debian/lutefisk/DEBIAN dpkg-shlibdeps -Tdebian/lutefisk.substvars debian/lutefisk/usr/bin/lutefisk dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel echo misc:Depends= >> debian/lutefisk.substvars dpkg-gencontrol -plutefisk -ldebian/changelog -Tdebian/lutefisk.substvars -Pdebian/lutefisk dpkg-gencontrol: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 644 debian/lutefisk/DEBIAN/control chown 0:0 debian/lutefisk/DEBIAN/control dh_md5sums -a -O--parallel (cd debian/lutefisk >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/lutefisk/DEBIAN/md5sums chown 0:0 debian/lutefisk/DEBIAN/md5sums dh_builddeb -a -O--parallel dpkg-deb --build debian/lutefisk .. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing lutefisk (in debian/lutefisk); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/lutefisk/DEBIAN/control, package lutefisk, directory debian/lutefisk .. removing usr/share/doc/lutefisk/changelog.gz pkgstripfiles: PNG optimization for package lutefisk took 0 s dpkg-deb: warning: 'debian/lutefisk/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `lutefisk' in `../lutefisk_1.0.7+dfsg-4_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../lutefisk_1.0.7+dfsg-4_arm64.changes dpkg-genchanges: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build lutefisk-1.0.7+dfsg dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20141025-1131 chroot-autobuild/build/buildd/lutefisk_1.0.7+dfsg-4_arm64.deb: new debian package, version 2.0. size 100784 bytes: control archive=1019 bytes. 618 bytes, 15 lines control 843 bytes, 11 lines md5sums Package: lutefisk Version: 1.0.7+dfsg-4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 280 Depends: libc6 (>= 2.17) Suggests: lutefisk-doc Section: science Priority: optional Homepage: http://www.hairyfatguy.com/lutefisk/ Description: de novo interpretation of peptide CID spectra Lutefisk performs a de novo interpreation of collision-induced decay (CID) spectra, providing the user with a file containing all the possible sequence candidates corresponding to the CID data. chroot-autobuild/build/buildd/lutefisk_1.0.7+dfsg-4_arm64.deb: drwxr-xr-x root/root 0 2014-10-25 11:31 ./ drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/ drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/bin/ -rwxr-xr-x root/root 213304 2014-10-25 11:31 ./usr/bin/lutefisk drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/share/ drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/share/man/ drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/share/man/man1/ -rw-r--r-- root/root 1366 2014-10-25 11:31 ./usr/share/man/man1/lutefisk.1.gz drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/share/doc/lutefisk/ -rw-r--r-- root/root 3258 2014-08-18 13:03 ./usr/share/doc/lutefisk/copyright -rw-r--r-- root/root 1549 2014-08-18 13:03 ./usr/share/doc/lutefisk/changelog.Debian.gz drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/share/doc/lutefisk/examples/ -rw-r--r-- root/root 1790 2005-09-07 18:49 ./usr/share/doc/lutefisk/examples/Lutefisk.qtof_params.gz -rw-r--r-- root/root 8778 2004-03-08 16:02 ./usr/share/doc/lutefisk/examples/Qtof_ELVISLIVESK.dta.gz -rw-r--r-- root/root 12 2004-07-29 20:27 ./usr/share/doc/lutefisk/examples/database.sequence -rw-r--r-- root/root 1764 2005-08-25 23:40 ./usr/share/doc/lutefisk/examples/Lutefisk.lcq_params.gz -rw-r--r-- root/root 1981 2005-09-07 18:49 ./usr/share/doc/lutefisk/examples/Qtof_ELVISLIVESK.lut drwxr-xr-x root/root 0 2014-10-25 11:31 ./usr/share/lutefisk/ -rw-r--r-- root/root 1696 2004-07-29 16:35 ./usr/share/lutefisk/Lutefisk.residues -rw-r--r-- root/root 584 2005-09-07 18:23 ./usr/share/lutefisk/Lutefisk.details lutefisk_1.0.7+dfsg-4_arm64.changes: Format: 1.8 Date: Mon, 18 Aug 2014 11:46:48 +0200 Source: lutefisk Binary: lutefisk lutefisk-doc Architecture: arm64 Version: 1.0.7+dfsg-4 Distribution: vivid-proposed Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Filippo Rusconi Description: lutefisk - de novo interpretation of peptide CID spectra lutefisk-doc - De novo interpretation of peptide CID spectra - documentation Changes: lutefisk (1.0.7+dfsg-4) unstable; urgency=medium . * mv upstream upstream/metadata . * Switch to more concise debhelper rules syntax. Checksums-Sha1: 79283cf70bb7ed314c35dd5a193cb9116511c212 100784 lutefisk_1.0.7+dfsg-4_arm64.deb Checksums-Sha256: 73200d79611c9dff8cb87788ee0f599ed206fe0316a989d09816976fced2aad6 100784 lutefisk_1.0.7+dfsg-4_arm64.deb Files: 4c229e6b4b29dbf9c601a89c68f06dbe 100784 science optional lutefisk_1.0.7+dfsg-4_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20141025-1131 Build needed 00:00:20, 4148k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6496502'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6496502/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6496502'] Unmounting chroot for build PACKAGEBUILD-6496502... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6496502'] Removing build PACKAGEBUILD-6496502