https://launchpad.net/ubuntu/+source/macs/2.2.6-3/+build/18488434 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-037 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 31 Jan 09:56:51 ntpdate[1921]: adjust time server 10.211.37.1 offset 0.000225 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18488434 --image-type chroot /home/buildd/filecache-default/9d93b4075e16ce7cfbdf01f21507152b0a173b17 Creating target for build PACKAGEBUILD-18488434 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18488434 Starting target for build PACKAGEBUILD-18488434 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18488434 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18488434 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18488434 Updating target for build PACKAGEBUILD-18488434 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 Packages [942 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe arm64 Packages [8406 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5142 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 Packages [62.6 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [34.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 Packages [469 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [248 kB] Fetched 16.5 MB in 6s (2989 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libctf-nobfd0 libctf0 libffi7 libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 105 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 58.4 MB of archives. After this operation, 40.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main arm64 libc6-dev arm64 2.30-0ubuntu3 [2091 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main arm64 libc-dev-bin arm64 2.30-0ubuntu3 [64.1 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main arm64 linux-libc-dev arm64 5.4.0-12.15 [1084 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main arm64 libisl22 arm64 0.22-2 [536 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 libcc1-0 arm64 9.2.1-25ubuntu1 [37.1 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main arm64 libctf-nobfd0 arm64 2.33.90.20200122-1ubuntu2 [43.4 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main arm64 libctf0 arm64 2.33.90.20200122-1ubuntu2 [43.0 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main arm64 binutils-aarch64-linux-gnu arm64 2.33.90.20200122-1ubuntu2 [1988 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main arm64 libbinutils arm64 2.33.90.20200122-1ubuntu2 [473 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main arm64 binutils-common arm64 2.33.90.20200122-1ubuntu2 [206 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main arm64 binutils arm64 2.33.90.20200122-1ubuntu2 [3356 B] Get:12 http://ftpmaster.internal/ubuntu focal/main arm64 gcc-9-base arm64 9.2.1-25ubuntu1 [19.2 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main arm64 libgcc1 arm64 1:9.2.1-25ubuntu1 [34.3 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main arm64 libgomp1 arm64 9.2.1-25ubuntu1 [80.6 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main arm64 libitm1 arm64 9.2.1-25ubuntu1 [25.0 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main arm64 libatomic1 arm64 9.2.1-25ubuntu1 [9168 B] Get:17 http://ftpmaster.internal/ubuntu focal/main arm64 libasan5 arm64 9.2.1-25ubuntu1 [365 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main arm64 liblsan0 arm64 9.2.1-25ubuntu1 [126 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main arm64 libtsan0 arm64 9.2.1-25ubuntu1 [284 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main arm64 libubsan1 arm64 9.2.1-25ubuntu1 [121 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main arm64 g++-9 arm64 9.2.1-25ubuntu1 [6811 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main arm64 libstdc++-9-dev arm64 9.2.1-25ubuntu1 [1675 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main arm64 libgcc-9-dev arm64 9.2.1-25ubuntu1 [909 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main arm64 gcc-9 arm64 9.2.1-25ubuntu1 [6675 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main arm64 cpp-9 arm64 9.2.1-25ubuntu1 [5960 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main arm64 libstdc++6 arm64 9.2.1-25ubuntu1 [466 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main arm64 libc6 arm64 2.30-0ubuntu3 [2273 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main arm64 base-files arm64 11ubuntu2 [60.0 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main arm64 debianutils arm64 4.9.1 [85.6 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main arm64 bash arm64 5.0-5ubuntu1 [603 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main arm64 bsdutils arm64 1:2.34-0.1ubuntu5 [60.7 kB] Get:32 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 grep arm64 3.4-1 [143 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main arm64 gzip arm64 1.10-0ubuntu4 [93.0 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main arm64 hostname arm64 3.23 [11.1 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main arm64 login arm64 1:4.8-1ubuntu1 [218 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main arm64 ncurses-bin arm64 6.1+20191019-1ubuntu1 [166 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main arm64 perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main arm64 libperl5.30 arm64 5.30.0-9 [3764 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main arm64 perl arm64 5.30.0-9 [224 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main arm64 perl-base arm64 5.30.0-9 [1389 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main arm64 bzip2 arm64 1.0.8-2 [33.0 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main arm64 libbz2-1.0 arm64 1.0.8-2 [32.9 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main arm64 libblkid1 arm64 2.34-0.1ubuntu5 [129 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main arm64 libuuid1 arm64 2.34-0.1ubuntu5 [19.9 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main arm64 libfdisk1 arm64 2.34-0.1ubuntu5 [160 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre2-8-0 arm64 10.34-7 [170 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main arm64 libselinux1 arm64 3.0-1 [64.8 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main arm64 libmount1 arm64 2.34-0.1ubuntu5 [140 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main arm64 libncurses6 arm64 6.1+20191019-1ubuntu1 [91.8 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main arm64 libtinfo6 arm64 6.1+20191019-1ubuntu1 [80.4 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main arm64 libncursesw6 arm64 6.1+20191019-1ubuntu1 [120 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main arm64 libsmartcols1 arm64 2.34-0.1ubuntu5 [93.4 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main arm64 fdisk arm64 2.34-0.1ubuntu5 [114 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main arm64 util-linux arm64 2.34-0.1ubuntu5 [982 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main arm64 libdebconfclient0 arm64 0.250ubuntu2 [6260 B] Get:56 http://ftpmaster.internal/ubuntu focal/main arm64 base-passwd arm64 3.5.47 [47.0 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main arm64 libc-bin arm64 2.30-0ubuntu3 [502 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main arm64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main arm64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main arm64 sysvinit-utils arm64 2.96-1ubuntu1 [20.5 kB] Get:61 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libgpg-error0 arm64 1.36-7ubuntu1 [54.9 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main arm64 libgcrypt20 arm64 1.8.5-3ubuntu1 [350 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main arm64 liblz4-1 arm64 1.9.2-2 [52.7 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main arm64 systemd-sysv arm64 244.1-0ubuntu2 [9364 B] Get:65 http://ftpmaster.internal/ubuntu focal/main arm64 libacl1 arm64 2.2.53-5ubuntu1 [17.7 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main arm64 libapparmor1 arm64 2.13.3-7ubuntu1 [33.2 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main arm64 libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:68 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libcap-ng0 arm64 0.7.9-2.1build1 [10.5 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main arm64 libaudit1 arm64 1:2.8.5-2ubuntu5 [38.4 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main arm64 libcap2 arm64 1:2.27-1 [13.9 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main arm64 libudev1 arm64 244.1-0ubuntu2 [70.5 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main arm64 libdevmapper1.02.1 arm64 2:1.02.155-2ubuntu8 [110 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main arm64 libjson-c4 arm64 0.13.1+dfsg-6 [28.0 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main arm64 libssl1.1 arm64 1.1.1d-2ubuntu3 [1153 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main arm64 libcryptsetup12 arm64 2:2.2.2-1ubuntu1 [166 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main arm64 libnettle7 arm64 3.5.1+really3.5.1-2 [124 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main arm64 libhogweed5 arm64 3.5.1+really3.5.1-2 [134 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main arm64 libffi7 arm64 3.3-3 [17.1 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main arm64 libp11-kit0 arm64 0.23.19-2 [178 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main arm64 libtasn1-6 arm64 4.15.0-2 [36.3 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main arm64 libgnutls30 arm64 3.6.11.1-2ubuntu2 [720 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main arm64 libkmod2 arm64 26-3ubuntu1 [39.5 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main arm64 libpam0g arm64 1.3.1-5ubuntu4 [53.9 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main arm64 libseccomp2 arm64 2.4.2-2ubuntu2 [39.8 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main arm64 mount arm64 2.34-0.1ubuntu5 [112 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main arm64 systemd arm64 244.1-0ubuntu2 [3384 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main arm64 libsystemd0 arm64 244.1-0ubuntu2 [240 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main arm64 libzstd1 arm64 1.4.4+dfsg-1 [216 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main arm64 libapt-pkg5.90 arm64 1.9.8 [776 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main arm64 gpgv arm64 2.2.17-3ubuntu1 [183 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main arm64 apt arm64 1.9.8 [1229 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main arm64 libpam-modules-bin arm64 1.3.1-5ubuntu4 [35.8 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main arm64 libpam-modules arm64 1.3.1-5ubuntu4 [242 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main arm64 logsave arm64 1.45.3-4ubuntu3 [9680 B] Get:95 http://ftpmaster.internal/ubuntu focal/main arm64 libext2fs2 arm64 1.45.3-4ubuntu3 [174 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main arm64 e2fsprogs arm64 1.45.3-4ubuntu3 [502 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main arm64 libattr1 arm64 1:2.4.48-5 [12.5 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main arm64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main arm64 libsepol1 arm64 3.0-1 [231 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main arm64 libsemanage-common all 3.0-1 [9880 B] Get:101 http://ftpmaster.internal/ubuntu focal/main arm64 libsemanage1 arm64 3.0-1 [79.6 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main arm64 passwd arm64 1:4.8-1ubuntu1 [771 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main arm64 libcom-err2 arm64 1.45.3-4ubuntu3 [8848 B] Get:104 http://ftpmaster.internal/ubuntu focal/main arm64 libss2 arm64 1.45.3-4ubuntu3 [10.7 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main arm64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main arm64 libsqlite3-0 arm64 3.30.1-1ubuntu1 [499 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main arm64 openssl arm64 1.1.1d-2ubuntu3 [597 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main arm64 libassuan0 arm64 2.5.3-7ubuntu2 [33.1 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main arm64 gpg arm64 2.2.17-3ubuntu1 [437 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main arm64 gpgconf arm64 2.2.17-3ubuntu1 [117 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main arm64 gpg-agent arm64 2.2.17-3ubuntu1 [216 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main arm64 liblockfile-bin arm64 1.16-1.1 [11.3 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main arm64 liblockfile1 arm64 1.16-1.1 [6440 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.4 MB in 2s (28.1 MB/s) (Reading database ... 12731 files and directories currently installed.) Preparing to unpack .../00-libc6-dev_2.30-0ubuntu3_arm64.deb ... Unpacking libc6-dev:arm64 (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../01-libc-dev-bin_2.30-0ubuntu3_arm64.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../02-linux-libc-dev_5.4.0-12.15_arm64.deb ... Unpacking linux-libc-dev:arm64 (5.4.0-12.15) over (5.3.0-18.19) ... Selecting previously unselected package libisl22:arm64. Preparing to unpack .../03-libisl22_0.22-2_arm64.deb ... Unpacking libisl22:arm64 (0.22-2) ... Preparing to unpack .../04-libcc1-0_9.2.1-25ubuntu1_arm64.deb ... Unpacking libcc1-0:arm64 (9.2.1-25ubuntu1) over (9.2.1-9ubuntu2) ... Selecting previously unselected package libctf-nobfd0:arm64. Preparing to unpack .../05-libctf-nobfd0_2.33.90.20200122-1ubuntu2_arm64.deb ... Unpacking libctf-nobfd0:arm64 (2.33.90.20200122-1ubuntu2) ... Selecting previously unselected package libctf0:arm64. 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Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up binutils-aarch64-linux-gnu (2.33.90.20200122-1ubuntu2) ... Setting up e2fsprogs (1.45.3-4ubuntu3) ... Setting up binutils (2.33.90.20200122-1ubuntu2) ... Setting up libgcc-9-dev:arm64 (9.2.1-25ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-25ubuntu1) ... Setting up libc6-dev:arm64 (2.30-0ubuntu3) ... Setting up libcryptsetup12:arm64 (2:2.2.2-1ubuntu1) ... Setting up gcc-9 (9.2.1-25ubuntu1) ... Setting up libstdc++-9-dev:arm64 (9.2.1-25ubuntu1) ... Setting up systemd (244.1-0ubuntu2) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up g++-9 (9.2.1-25ubuntu1) ... Setting up systemd-sysv (244.1-0ubuntu2) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18488434 arm64 focal-proposed -c chroot:build-PACKAGEBUILD-18488434 --arch=arm64 --dist=focal-proposed --nolog macs_2.2.6-3.dsc Initiating build PACKAGEBUILD-18488434 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-037.buildd +==============================================================================+ | macs 2.2.6-3 (arm64) 31 Jan 2020 09:57 | +==============================================================================+ Package: macs Version: 2.2.6-3 Source Version: 2.2.6-3 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/macs-01uVnD/macs-2.2.6' with '<>' I: NOTICE: Log filtering will replace 'build/macs-01uVnD' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18488434/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- macs_2.2.6-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-K4HuDJ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-K4HuDJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-K4HuDJ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-K4HuDJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-K4HuDJ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-K4HuDJ/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (91.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-K4HuDJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (70.0 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14657 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pytest, help2man, procps Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pytest, help2man, procps dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<>/resolver-8pyOi8/apt_archive/sbuild-build-depends-macs-dummy.deb'. Ign:1 copy:/<>/resolver-8pyOi8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8pyOi8/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-8pyOi8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8pyOi8/apt_archive ./ Sources [256 B] Get:5 copy:/<>/resolver-8pyOi8/apt_archive ./ Packages [575 B] Fetched 2950 B in 0s (92.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install macs build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63 liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-all python3-all-dev python3-atomicwrites python3-attr python3-dev python3-distutils python3-importlib-metadata python3-lib2to3 python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pytest python3-setuptools python3-six python3-wcwidth python3-zipp python3.7 python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc gfortran python-numpy-doc python3-numpy-dbg subversion python-pyparsing-doc python-setuptools-doc python3.7-venv python3.7-doc binfmt-support python3.8-venv python3.8-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63 liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-all python3-all-dev python3-atomicwrites python3-attr python3-dev python3-distutils python3-importlib-metadata python3-lib2to3 python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pytest python3-setuptools python3-six python3-wcwidth python3-zipp python3.7 python3.7-dev python3.7-minimal python3.8 python3.8-dev python3.8-minimal sbuild-build-depends-macs-dummy zlib1g-dev 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 45.4 MB of archives. After this operation, 203 MB of additional disk space will be used. Get:1 copy:/<>/resolver-8pyOi8/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu focal/main arm64 liblocale-gettext-perl arm64 1.07-4 [16.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main arm64 libpython3.8-minimal arm64 3.8.1-2ubuntu3 [701 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main arm64 libexpat1 arm64 2.2.9-1 [61.3 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 python3.8-minimal arm64 3.8.1-2ubuntu3 [1821 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 python3-minimal arm64 3.8.0-3 [23.4 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main arm64 mime-support all 3.64ubuntu1 [30.6 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main arm64 libmpdec2 arm64 2.4.2-2 [74.0 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main arm64 libpython3.8-stdlib arm64 3.8.1-2ubuntu3 [1643 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main arm64 python3.8 arm64 3.8.1-2ubuntu3 [360 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libpython3-stdlib arm64 3.8.0-3 [6904 B] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 python3 arm64 3.8.0-3 [47.6 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main arm64 libpython3.7-minimal arm64 3.7.6-1ubuntu2 [547 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main arm64 python3.7-minimal arm64 3.7.6-1ubuntu2 [1723 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main arm64 libbsd0 arm64 0.10.0-1 [43.7 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main arm64 groff-base arm64 1.22.4-4 [815 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main arm64 libpipeline1 arm64 1.5.2-2 [26.0 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main arm64 man-db arm64 2.9.0-2 [1097 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main arm64 libmagic-mgc arm64 1:5.38-4 [218 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main arm64 libmagic1 arm64 1:5.38-4 [71.7 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main arm64 file arm64 1:5.38-4 [23.3 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main arm64 libelf1 arm64 0.176-1.1build1 [44.2 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main arm64 libglib2.0-0 arm64 2.63.3-3 [1191 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main arm64 libicu63 arm64 63.2-2 [8146 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main arm64 libpython3.7-stdlib arm64 3.7.6-1ubuntu2 [1717 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main arm64 libxml2 arm64 2.9.4+dfsg1-8ubuntu3 [575 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main arm64 python3-pkg-resources all 44.0.0-1 [100 kB] Get:30 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 python3-six all 1.14.0-2 [12.1 kB] Get:31 http://ftpmaster.internal/ubuntu 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http://ftpmaster.internal/ubuntu focal/main arm64 libarchive-zip-perl all 1.67-1 [90.4 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:44 http://ftpmaster.internal/ubuntu focal/main arm64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main arm64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:46 http://ftpmaster.internal/ubuntu focal/main arm64 dwz arm64 0.13-5 [134 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main arm64 libcroco3 arm64 0.6.13-1 [77.1 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main arm64 gettext arm64 0.19.8.1-10 [851 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main arm64 po-debconf all 1.0.21 [233 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main arm64 debhelper all 12.7.3ubuntu1 [896 kB] Get:52 http://ftpmaster.internal/ubuntu 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libpython3-dev arm64 3.8.0-3 [7072 B] Get:63 http://ftpmaster.internal/ubuntu focal/main arm64 libpython3.7 arm64 3.7.6-1ubuntu2 [1373 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main arm64 libpython3.7-dev arm64 3.7.6-1ubuntu2 [3051 kB] Get:65 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libpython3-all-dev arm64 3.8.0-3 [1120 B] Get:66 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 python3-all arm64 3.8.0-3 [1112 B] Get:67 http://ftpmaster.internal/ubuntu focal/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1ubuntu3 [170 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main arm64 python3.8-dev arm64 3.8.1-2ubuntu3 [515 kB] Get:69 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 python3-dev arm64 3.8.0-3 [1212 B] Get:70 http://ftpmaster.internal/ubuntu focal/main arm64 python3.7-dev arm64 3.7.6-1ubuntu2 [520 kB] Get:71 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 python3-all-dev arm64 3.8.0-3 [1124 B] Get:72 http://ftpmaster.internal/ubuntu focal/universe arm64 python3-atomicwrites all 1.1.5-2build1 [7016 B] Get:73 http://ftpmaster.internal/ubuntu focal/main arm64 python3-attr all 18.2.0-1build1 [29.7 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main arm64 python3-more-itertools all 4.2.0-1build1 [39.4 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main arm64 python3-zipp all 1.0.0-1 [5312 B] Get:76 http://ftpmaster.internal/ubuntu focal/main arm64 python3-importlib-metadata all 1.4.0-1ubuntu1 [10.1 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main arm64 python3-numpy arm64 1:1.17.4-5ubuntu2 [5447 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main arm64 python3-pyparsing all 2.4.2-1 [58.8 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main arm64 python3-packaging all 20.0-1 [26.8 kB] Get:80 http://ftpmaster.internal/ubuntu focal/universe arm64 python3-pluggy all 0.13.0-2 [18.4 kB] Get:81 http://ftpmaster.internal/ubuntu focal/universe arm64 python3-py all 1.8.1-1 [65.4 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main arm64 python3-wcwidth all 0.1.8+dfsg1-1ubuntu1 [15.4 kB] Get:83 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 python3-pytest all 4.6.9-1 [178 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main arm64 python3-setuptools all 44.0.0-1 [257 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.4 MB in 5s (10.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14657 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package libpython3.8-minimal:arm64. Preparing to unpack .../libpython3.8-minimal_3.8.1-2ubuntu3_arm64.deb ... Unpacking libpython3.8-minimal:arm64 (3.8.1-2ubuntu3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.2.9-1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.9-1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.1-2ubuntu3_arm64.deb ... Unpacking python3.8-minimal (3.8.1-2ubuntu3) ... Setting up libpython3.8-minimal:arm64 (3.8.1-2ubuntu3) ... Setting up libexpat1:arm64 (2.2.9-1) ... Setting up python3.8-minimal (3.8.1-2ubuntu3) ... Selecting previously unselected package python3-minimal. (Reading database ... 14962 files and directories currently installed.) 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Setting up python3-minimal (3.8.0-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Selecting previously unselected package python3. (Reading database ... 15364 files and directories currently installed.) Preparing to unpack .../00-python3_3.8.0-3_arm64.deb ... Unpacking python3 (3.8.0-3) ... Selecting previously unselected package libpython3.7-minimal:arm64. Preparing to unpack .../01-libpython3.7-minimal_3.7.6-1ubuntu2_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.6-1ubuntu2) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../02-python3.7-minimal_3.7.6-1ubuntu2_arm64.deb ... Unpacking python3.7-minimal (3.7.6-1ubuntu2) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../03-libbsd0_0.10.0-1_arm64.deb ... Unpacking libbsd0:arm64 (0.10.0-1) ... 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Setting up libglib2.0-0:arm64 (2.63.3-3) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.3ubuntu1) ... Setting up libmagic1:arm64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libpython3.7-minimal:arm64 (3.7.6-1ubuntu2) ... Setting up libicu63:arm64 (63.2-2) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:arm64 (3.9.0-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.2.9-1) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up python3.7-minimal (3.7.6-1ubuntu2) ... Setting up libgfortran5:arm64 (9.2.1-25ubuntu1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libpython3.8-stdlib:arm64 (3.8.1-2ubuntu3) ... Setting up python3.8 (3.8.1-2ubuntu3) ... Setting up libbsd0:arm64 (0.10.0-1) ... Setting up libelf1:arm64 (0.176-1.1build1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-8ubuntu3) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libpython3-stdlib:arm64 (3.8.0-3) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libpython3.7-stdlib:arm64 (3.7.6-1ubuntu2) ... Setting up liblapack3:arm64 (3.9.0-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libpython3.7:arm64 (3.7.6-1ubuntu2) ... Setting up libtool (2.4.6-11) ... Setting up libpython3.7-dev:arm64 (3.7.6-1ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.0-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-atomicwrites (1.1.5-2build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up help2man (1.47.12) ... Setting up python3-six (1.14.0-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-wcwidth (0.1.8+dfsg1-1ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-pyparsing (2.4.2-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3.8:arm64 (3.8.1-2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up python3-lib2to3 (3.8.0-1) ... Setting up python3-pkg-resources (44.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up automake (1:1.16.1-4ubuntu5) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.0-1) ... Setting up dh-python (4.20191017ubuntu5) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-more-itertools (4.2.0-1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-attr (18.2.0-1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3.7 (3.7.6-1ubuntu2) ... Setting up gettext (0.19.8.1-10) ... Setting up python3-setuptools (44.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-py (1.8.1-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-all (3.8.0-3) ... Setting up python3-zipp (1.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3.7-dev (3.7.6-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-packaging (20.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3.8-dev:arm64 (3.8.1-2ubuntu3) ... Setting up python3-numpy (1:1.17.4-5ubuntu2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3.8-dev (3.8.1-2ubuntu3) ... Setting up libpython3-dev:arm64 (3.8.0-3) ... Setting up python3-importlib-metadata (1.4.0-1ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up po-debconf (1.0.21) ... Setting up libpython3-all-dev:arm64 (3.8.0-3) ... Setting up python3-dev (3.8.0-3) ... Setting up python3-pluggy (0.13.0-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-all-dev (3.8.0-3) ... Setting up python3-pytest (4.6.9-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up debhelper (12.7.3ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-173-generic arm64 (aarch64) Toolchain package versions: binutils_2.33.90.20200122-1ubuntu2 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-25ubuntu1 gcc-9_9.2.1-25ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-25ubuntu1 libstdc++6_9.2.1-25ubuntu1 linux-libc-dev_5.4.0-12.15 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.8 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu5 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.90.20200122-1ubuntu2 binutils-aarch64-linux-gnu_2.33.90.20200122-1ubuntu2 binutils-common_2.33.90.20200122-1ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu5 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-25ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017ubuntu5 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu3 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu5 file_1:5.38-4 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-25ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-25ubuntu1 gcc-9-base_9.2.1-25ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 help2man_1.47.12 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.8 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-25ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_9.2.1-25ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.33.90.20200122-1ubuntu2 libblas3_3.9.0-1 libblkid1_2.34-0.1ubuntu5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.27-1 libcc1-0_9.2.1-25ubuntu1 libcom-err2_1.45.3-4ubuntu3 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libctf-nobfd0_2.33.90.20200122-1ubuntu2 libctf0_2.33.90.20200122-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.3ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu8 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.3-4ubuntu3 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu5 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.2.1-25ubuntu1 libgcc1_1:9.2.1-25ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-25ubuntu1 libglib2.0-0_2.63.3-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_9.2.1-25ubuntu1 libgpg-error0_1.36-7ubuntu1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_9.2.1-25ubuntu1 libjson-c4_0.13.1+dfsg-6 libkmod2_26-3ubuntu1 liblapack3_3.9.0-1 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_9.2.1-25ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu5 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.19-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpython3-all-dev_3.8.0-3 libpython3-dev_3.8.0-3 libpython3-stdlib_3.8.0-3 libpython3.7_3.7.6-1ubuntu2 libpython3.7-dev_3.7.6-1ubuntu2 libpython3.7-minimal_3.7.6-1ubuntu2 libpython3.7-stdlib_3.7.6-1ubuntu2 libpython3.8_3.8.1-2ubuntu3 libpython3.8-dev_3.8.1-2ubuntu3 libpython3.8-minimal_3.8.1-2ubuntu3 libpython3.8-stdlib_3.8.1-2ubuntu3 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu5 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu3 libssl1.1_1.1.1d-2ubuntu3 libstdc++-9-dev_9.2.1-25ubuntu1 libstdc++6_9.2.1-25ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244.1-0ubuntu2 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libtsan0_9.2.1-25ubuntu1 libubsan1_9.2.1-25ubuntu1 libuchardet0_0.0.6-3 libudev1_244.1-0ubuntu2 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu5 libxml2_2.9.4+dfsg1-8ubuntu3 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.0-12.15 lockfile-progs_0.1.18 login_1:4.8-1ubuntu1 logsave_1.45.3-4ubuntu3 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu5 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.8-1ubuntu1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python3_3.8.0-3 python3-all_3.8.0-3 python3-all-dev_3.8.0-3 python3-atomicwrites_1.1.5-2build1 python3-attr_18.2.0-1build1 python3-dev_3.8.0-3 python3-distutils_3.8.0-1 python3-importlib-metadata_1.4.0-1ubuntu1 python3-lib2to3_3.8.0-1 python3-minimal_3.8.0-3 python3-more-itertools_4.2.0-1build1 python3-numpy_1:1.17.4-5ubuntu2 python3-packaging_20.0-1 python3-pkg-resources_44.0.0-1 python3-pluggy_0.13.0-2 python3-py_1.8.1-1 python3-pyparsing_2.4.2-1 python3-pytest_4.6.9-1 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3-wcwidth_0.1.8+dfsg1-1ubuntu1 python3-zipp_1.0.0-1 python3.7_3.7.6-1ubuntu2 python3.7-dev_3.7.6-1ubuntu2 python3.7-minimal_3.7.6-1ubuntu2 python3.8_3.8.1-2ubuntu3 python3.8-dev_3.8.1-2ubuntu3 python3.8-minimal_3.8.1-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244.1-0ubuntu2 systemd-sysv_244.1-0ubuntu2 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu5 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Dec 28 11:58:21 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./macs_2.2.6-3.dsc dpkg-source: info: extracting macs in macs-2.2.6 dpkg-source: info: unpacking macs_2.2.6.orig.tar.gz dpkg-source: info: unpacking macs_2.2.6-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying fix_test_signal_failures Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18488434 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18488434 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18488434 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 2.2.6-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from macs-2.2.6/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean I: pybuild base:217: python3.7 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.7_MACS2/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it I: pybuild base:217: python3.8 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.8_MACS2/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -Rf test/macs2.2.6-3* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config I: pybuild base:217: python3.8 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' #for pyx in `find MACS2/ -name "*.pyx" | grep -v khash`; do \ # rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild base:217: /usr/bin/python3.7 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/__init__.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/Constants.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 creating /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO copying MACS2/cPosValCalculation.pxd -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 copying MACS2/khash.pxd -> /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2 running build_ext building 'MACS2.Prob' extension creating build creating build/temp.linux-arm64-3.7 creating build/temp.linux-arm64-3.7/MACS2 aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/Prob.c -o build/temp.linux-arm64-3.7/MACS2/Prob.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/Prob.o -lm -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Prob.cpython-37m-aarch64-linux-gnu.so building 'MACS2.IO.Parser' extension creating build/temp.linux-arm64-3.7/MACS2/IO aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/Parser.c -o build/temp.linux-arm64-3.7/MACS2/IO/Parser.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/IO/Parser.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/Parser.cpython-37m-aarch64-linux-gnu.so building 'MACS2.Pileup' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/Pileup.c -o build/temp.linux-arm64-3.7/MACS2/Pileup.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/cPosValCalculation.c -o build/temp.linux-arm64-3.7/MACS2/cPosValCalculation.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/Pileup.o build/temp.linux-arm64-3.7/MACS2/cPosValCalculation.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Pileup.cpython-37m-aarch64-linux-gnu.so building 'MACS2.PeakModel' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/PeakModel.c -o build/temp.linux-arm64-3.7/MACS2/PeakModel.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/PeakModel.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/PeakModel.cpython-37m-aarch64-linux-gnu.so building 'MACS2.PeakDetect' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MACS2/PeakDetect.c -o build/temp.linux-arm64-3.7/MACS2/PeakDetect.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/PeakDetect.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/PeakDetect.cpython-37m-aarch64-linux-gnu.so building 'MACS2.Signal' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/Signal.c -o build/temp.linux-arm64-3.7/MACS2/Signal.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/Signal.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Signal.cpython-37m-aarch64-linux-gnu.so building 'MACS2.IO.PeakIO' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MACS2/IO/PeakIO.c -o build/temp.linux-arm64-3.7/MACS2/IO/PeakIO.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/IO/PeakIO.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/PeakIO.cpython-37m-aarch64-linux-gnu.so building 'MACS2.IO.BedGraphIO' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MACS2/IO/BedGraphIO.c -o build/temp.linux-arm64-3.7/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/IO/BedGraphIO.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/BedGraphIO.cpython-37m-aarch64-linux-gnu.so building 'MACS2.IO.FixWidthTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-arm64-3.7/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/IO/FixWidthTrack.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/FixWidthTrack.cpython-37m-aarch64-linux-gnu.so building 'MACS2.IO.PairedEndTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-arm64-3.7/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/IO/PairedEndTrack.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/PairedEndTrack.cpython-37m-aarch64-linux-gnu.so building 'MACS2.IO.BedGraph' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MACS2/IO/BedGraph.c -o build/temp.linux-arm64-3.7/MACS2/IO/BedGraph.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/IO/BedGraph.o -lm -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/BedGraph.cpython-37m-aarch64-linux-gnu.so building 'MACS2.IO.ScoreTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/ScoreTrack.c -o build/temp.linux-arm64-3.7/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/IO/ScoreTrack.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/ScoreTrack.cpython-37m-aarch64-linux-gnu.so building 'MACS2.IO.CallPeakUnit' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-arm64-3.7/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/IO/CallPeakUnit.o -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/CallPeakUnit.cpython-37m-aarch64-linux-gnu.so building 'MACS2.Statistics' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/Statistics.c -o build/temp.linux-arm64-3.7/MACS2/Statistics.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/MACS2/Statistics.o -lm -o /<>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Statistics.cpython-37m-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.7 copying and adjusting bin/macs2 -> build/scripts-3.7 changing mode of build/scripts-3.7/macs2 from 664 to 775 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/__init__.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/Constants.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 creating /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO copying MACS2/cPosValCalculation.pxd -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 copying MACS2/khash.pxd -> /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2 running build_ext building 'MACS2.Prob' extension creating build/temp.linux-arm64-3.8 creating build/temp.linux-arm64-3.8/MACS2 aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/Prob.c -o build/temp.linux-arm64-3.8/MACS2/Prob.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/Prob.o -lm -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Prob.cpython-38-aarch64-linux-gnu.so building 'MACS2.IO.Parser' extension creating build/temp.linux-arm64-3.8/MACS2/IO aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/Parser.c -o build/temp.linux-arm64-3.8/MACS2/IO/Parser.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/IO/Parser.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/Parser.cpython-38-aarch64-linux-gnu.so building 'MACS2.Pileup' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/Pileup.c -o build/temp.linux-arm64-3.8/MACS2/Pileup.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/cPosValCalculation.c -o build/temp.linux-arm64-3.8/MACS2/cPosValCalculation.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/Pileup.o build/temp.linux-arm64-3.8/MACS2/cPosValCalculation.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Pileup.cpython-38-aarch64-linux-gnu.so building 'MACS2.PeakModel' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/PeakModel.c -o build/temp.linux-arm64-3.8/MACS2/PeakModel.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/PeakModel.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/PeakModel.cpython-38-aarch64-linux-gnu.so building 'MACS2.PeakDetect' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c MACS2/PeakDetect.c -o build/temp.linux-arm64-3.8/MACS2/PeakDetect.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/PeakDetect.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/PeakDetect.cpython-38-aarch64-linux-gnu.so building 'MACS2.Signal' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/Signal.c -o build/temp.linux-arm64-3.8/MACS2/Signal.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/Signal.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Signal.cpython-38-aarch64-linux-gnu.so building 'MACS2.IO.PeakIO' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c MACS2/IO/PeakIO.c -o build/temp.linux-arm64-3.8/MACS2/IO/PeakIO.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/IO/PeakIO.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/PeakIO.cpython-38-aarch64-linux-gnu.so building 'MACS2.IO.BedGraphIO' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-arm64-3.8/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/IO/BedGraphIO.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/BedGraphIO.cpython-38-aarch64-linux-gnu.so building 'MACS2.IO.FixWidthTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-arm64-3.8/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/IO/FixWidthTrack.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/FixWidthTrack.cpython-38-aarch64-linux-gnu.so building 'MACS2.IO.PairedEndTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-arm64-3.8/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/IO/PairedEndTrack.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/PairedEndTrack.cpython-38-aarch64-linux-gnu.so building 'MACS2.IO.BedGraph' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c MACS2/IO/BedGraph.c -o build/temp.linux-arm64-3.8/MACS2/IO/BedGraph.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/IO/BedGraph.o -lm -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/BedGraph.cpython-38-aarch64-linux-gnu.so building 'MACS2.IO.ScoreTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-arm64-3.8/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/IO/ScoreTrack.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/ScoreTrack.cpython-38-aarch64-linux-gnu.so building 'MACS2.IO.CallPeakUnit' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-arm64-3.8/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/IO/CallPeakUnit.o -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/CallPeakUnit.cpython-38-aarch64-linux-gnu.so building 'MACS2.Statistics' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/Statistics.c -o build/temp.linux-arm64-3.8/MACS2/Statistics.o -w -O3 -ffast-math -g0 aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.8/MACS2/Statistics.o -lm -o /<>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Statistics.cpython-38-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.8 copying and adjusting bin/macs2 -> build/scripts-3.8 changing mode of build/scripts-3.8/macs2 from 664 to 775 PYTHONPATH=./.pybuild/pythonX.Y_*/build/ help2man \ --no-discard-stderr --no-info \ --name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs2_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/pythonX.Y_*/build/ help2man \ --no-discard-stderr --no-info --version-string="2.2.6" \ --include debian/macs2_${subcommand}-man-include \ "python3 bin/macs2 ${subcommand}" > \ debian/macs2_${subcommand}.1; done make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test I: pybuild base:217: cd /<>/.pybuild/cpython3_3.7_MACS2/build; python3.7 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.7.6, pytest-4.6.9, py-1.8.1, pluggy-0.13.0 rootdir: /<> collected 42 items test/test_BedGraph.py .... [ 9%] test/test_FixWidthTrack.py .... [ 19%] test/test_PairedEndTrack.py .... [ 28%] test/test_Parser.py ... [ 35%] test/test_PeakIO.py ... [ 42%] test/test_Pileup.py .. [ 47%] test/test_Prob.py ................ [ 85%] test/test_ScoreTrack.py .... [ 95%] test/test_Signal.py s. [100%] ===================== 41 passed, 1 skipped in 1.45 seconds ===================== I: pybuild base:217: cd /<>/.pybuild/cpython3_3.8_MACS2/build; python3.8 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.8.1, pytest-4.6.9, py-1.8.1, pluggy-0.13.0 rootdir: /<> collected 42 items test/test_BedGraph.py .... [ 9%] test/test_FixWidthTrack.py .... [ 19%] test/test_PairedEndTrack.py .... [ 28%] test/test_Parser.py ... [ 35%] test/test_PeakIO.py ... [ 42%] test/test_Pileup.py .. [ 47%] test/test_Prob.py ................ [ 85%] test/test_ScoreTrack.py .... [ 95%] test/test_Signal.py s. [100%] ===================== 41 passed, 1 skipped in 1.25 seconds ===================== cd test && for PY3VER in 3.7 3.8; do \ export PATH=/<>/build/scripts-${PY3VER}:$PATH \ && export PYTHONPATH=/<>/.pybuild/cpython3_${PY3VER}_MACS2/build \ && ./cmdlinetest macs2.2.6-3-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. 50k contigs with buffersize 12.1 callpeak 12.2 filterdup 12.3 pileup 12.4 randsample 13. search for errors or warnings in log files checking macs2.2.6-3-3.7_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking macs2.2.6-3-3.7_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking macs2.2.6-3-3.7_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.6-3-3.7_run_50kcontigs/run_randsample.log... ... clear! checking macs2.2.6-3-3.7_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking macs2.2.6-3-3.7_run_bdgcmp/run_bdgcmp.log... ... clear! checking macs2.2.6-3-3.7_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking macs2.2.6-3-3.7_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking macs2.2.6-3-3.7_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking macs2.2.6-3-3.7_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking macs2.2.6-3-3.7_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking macs2.2.6-3-3.7_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking macs2.2.6-3-3.7_run_cmbreps/run_cmbreps_max.log... ... clear! checking macs2.2.6-3-3.7_run_cmbreps/run_cmbreps_mean.log... ... clear! checking macs2.2.6-3-3.7_run_filterdup/run_filterdup.log... ... clear! checking macs2.2.6-3-3.7_run_filterdup/run_filterdup_d.log... ... clear! checking macs2.2.6-3-3.7_run_filterdup/run_filterdup_pe.log... ... clear! checking macs2.2.6-3-3.7_run_filterdup/run_filterdup_pe_d.log... ... clear! checking macs2.2.6-3-3.7_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking macs2.2.6-3-3.7_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking macs2.2.6-3-3.7_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking macs2.2.6-3-3.7_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.6-3-3.7_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking macs2.2.6-3-3.7_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking macs2.2.6-3-3.7_run_predictd/run_predictd.log... ... clear! checking macs2.2.6-3-3.7_run_randsample/run_randsample.log... ... clear! checking macs2.2.6-3-3.7_run_randsample/run_randsample_bampe.log... ... clear! checking macs2.2.6-3-3.7_run_randsample/run_randsample_bedpe.log... ... clear! checking macs2.2.6-3-3.7_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking macs2.2.6-3-3.7_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 14. compare with standard outputs 14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... ... success! 14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... ... success! 14.1.3 checking 50kcontigs run_filterdup_result.bed ... ... success! 14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... ... success! 14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... ... success! 14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... ... success! 14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... ... success! 14.4.1 checking bdgdiff common.bed ... ... success! 14.4.2 checking bdgdiff cond1.bed ... ... failed! Difference: 10c10 < chr22 17753011 17753262 cond1.bed10 10.91568 --- > chr22 17753011 17753262 cond1.bed10 10.91567 13c13 < chr22 18020285 18020538 cond1.bed13 15.57159 --- > chr22 18020285 18020538 cond1.bed13 15.57158 36c36 < chr22 19483443 19483663 cond1.bed36 13.70841 14.4.3 checking bdgdiff cond2.bed ... ... success! 14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... ... success! 14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... ... failed! Difference: 10c10 < chr22 17753011 17753262 run_bdgdiff_prefix_cond1_10 10.91568 --- > chr22 17753011 17753262 run_bdgdiff_prefix_cond1_10 10.91567 13c13 < chr22 18020285 18020538 run_bdgdiff_prefix_cond1_13 15.57159 --- > chr22 18020285 18020538 run_bdgdiff_prefix_cond1_13 15.57158 36c36 < chr22 19483443 19483663 run_bdgdiff_prefix_cond1_36 13.70841 14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... ... success! 14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... ... success! 14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... ... success! 14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... ... failed! Difference: 4c4 < chr22 17398270 17398731 run_callpeak_broad_peak_4 264 . 13.48574 29.21884 26.40472 --- > chr22 17398270 17398731 run_callpeak_broad_peak_4 264 . 13.48575 29.21884 26.40472 21c21 < chr22 18359202 18359447 run_callpeak_broad_peak_21 20 . 3.41527 4.29312 2.06036 --- > chr22 18359202 18359447 run_callpeak_broad_peak_21 20 . 3.41527 4.29313 2.06036 31c31 < chr22 18895703 18896357 run_callpeak_broad_peak_31 209 . 12.10957 23.65841 20.97121 14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... ... failed! Difference: 4c4 < chr22 17398270 17398731 run_callpeak_broad_peak_4 264 . 17398270 17398731 0 3 1,440,1 0,1,460 13.48574 29.21884 26.40472 --- > chr22 17398270 17398731 run_callpeak_broad_peak_4 264 . 17398270 17398731 0 3 1,440,1 0,1,460 13.48575 29.21884 26.40472 21c21 < chr22 18359202 18359447 run_callpeak_broad_peak_21 20 . 18359202 18359447 0 1 245 0 3.41527 4.29312 2.06036 --- > chr22 18359202 18359447 run_callpeak_broad_peak_21 20 . 18359202 18359447 0 1 245 0 3.41527 4.29313 2.06036 31c31 < chr22 18895703 18896357 run_callpeak_broad_peak_31 209 . 18895703 18896357 0 2 1,443 0,211 12.10957 23.65841 20.97121 14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... ... success! 14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... ... success! 14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... ... success! 14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... ... success! 14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... ... success! 14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... ... success! 14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... ... success! 14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... ... success! 14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... ... success! 14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... ... success! 14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... ... success! 14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... ... success! 14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... ... success! 14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... ... success! 14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... ... success! 14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... ... success! 14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... ... success! 14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... ... success! 14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... ... success! 14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... ... success! 14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... ... success! 14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... ... success! 14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... ... success! 14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... ... success! 14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... ... success! 14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... ... success! 14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... ... success! 14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... ... success! 14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... ... success! 14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... ... success! 14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... ... failed! Difference: 4c4 < chr22 17398268 17398740 run_callpeak_bampe_broad_peak_4 279 . 13.95538 30.73891 27.95395 --- > chr22 17398268 17398740 run_callpeak_bampe_broad_peak_4 279 . 13.95538 30.73891 27.95394 17c17 < chr22 18250666 18251256 run_callpeak_bampe_broad_peak_17 32 . 4.20173 5.49854 3.24534 --- > chr22 18250666 18251256 run_callpeak_bampe_broad_peak_17 32 . 4.20173 5.49854 3.24533 21c21 < chr22 18312606 18313184 run_callpeak_bampe_broad_peak_21 309 . 14.56135 33.80837 30.98637 14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... ... failed! Difference: 4c4 < chr22 17398268 17398740 run_callpeak_bampe_broad_peak_4 279 . 17398268 17398740 0 2 471,1 0,471 13.95538 30.73891 27.95395 --- > chr22 17398268 17398740 run_callpeak_bampe_broad_peak_4 279 . 17398268 17398740 0 2 471,1 0,471 13.95538 30.73891 27.95394 17c17 < chr22 18250666 18251256 run_callpeak_bampe_broad_peak_17 32 . 18250666 18251256 0 2 1,568 0,22 4.20173 5.49854 3.24534 --- > chr22 18250666 18251256 run_callpeak_bampe_broad_peak_17 32 . 18250666 18251256 0 2 1,568 0,22 4.20173 5.49854 3.24533 21c21 < chr22 18312606 18313184 run_callpeak_bampe_broad_peak_21 309 . 18312606 18313184 0 2 1,514 0,64 14.56135 33.80837 30.98637 14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... ... success! 14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... ... success! 14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... ... failed! Difference: 4c4 < chr22 17398268 17398740 run_callpeak_bedpe_broad_peak_4 279 . 13.95538 30.73891 27.95395 --- > chr22 17398268 17398740 run_callpeak_bedpe_broad_peak_4 279 . 13.95538 30.73891 27.95394 17c17 < chr22 18250666 18251256 run_callpeak_bedpe_broad_peak_17 32 . 4.20173 5.49854 3.24534 --- > chr22 18250666 18251256 run_callpeak_bedpe_broad_peak_17 32 . 4.20173 5.49854 3.24533 21c21 < chr22 18312606 18313184 run_callpeak_bedpe_broad_peak_21 309 . 14.56135 33.80837 30.98637 14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... ... failed! Difference: 4c4 < chr22 17398268 17398740 run_callpeak_bedpe_broad_peak_4 279 . 17398268 17398740 0 2 471,1 0,471 13.95538 30.73891 27.95395 --- > chr22 17398268 17398740 run_callpeak_bedpe_broad_peak_4 279 . 17398268 17398740 0 2 471,1 0,471 13.95538 30.73891 27.95394 17c17 < chr22 18250666 18251256 run_callpeak_bedpe_broad_peak_17 32 . 18250666 18251256 0 2 1,568 0,22 4.20173 5.49854 3.24534 --- > chr22 18250666 18251256 run_callpeak_bedpe_broad_peak_17 32 . 18250666 18251256 0 2 1,568 0,22 4.20173 5.49854 3.24533 21c21 < chr22 18312606 18313184 run_callpeak_bedpe_broad_peak_21 309 . 18312606 18313184 0 2 1,514 0,64 14.56135 33.80837 30.98637 14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... ... success! 14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... ... success! 14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... ... success! 14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... ... success! 14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... ... success! 14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... ... success! 14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... ... success! 14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... ... success! 14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... ... success! 14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... ... success! 14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... ... success! 14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... ... success! 14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... ... success! 14.11.1 checking cmbreps run_cmbreps_fisher.bdg ... ... success! 14.11.2 checking cmbreps run_cmbreps_max.bdg ... ... success! 14.11.3 checking cmbreps run_cmbreps_mean.bdg ... ... success! 14.12.1 checking filterdup run_filterdup_result.bed ... ... success! 14.12.2 checking filterdup run_filterdup_result_pe.bedpe ... ... success! 14.13.1 checking pileup run_pileup_CTRL.bed.bdg ... ... success! 14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... ... success! 14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... ... success! 14.13.4 checking pileup run_pileup_ChIP.bed.bdg ... ... success! 14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... ... success! 14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... ... success! 14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... ... success! 14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... ... success! 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. 50k contigs with buffersize 12.1 callpeak 12.2 filterdup 12.3 pileup 12.4 randsample 13. search for errors or warnings in log files checking macs2.2.6-3-3.8_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking macs2.2.6-3-3.8_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking macs2.2.6-3-3.8_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.6-3-3.8_run_50kcontigs/run_randsample.log... ... clear! checking macs2.2.6-3-3.8_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking macs2.2.6-3-3.8_run_bdgcmp/run_bdgcmp.log... ... clear! checking macs2.2.6-3-3.8_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking macs2.2.6-3-3.8_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking macs2.2.6-3-3.8_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking macs2.2.6-3-3.8_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking macs2.2.6-3-3.8_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking macs2.2.6-3-3.8_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking macs2.2.6-3-3.8_run_cmbreps/run_cmbreps_max.log... ... clear! checking macs2.2.6-3-3.8_run_cmbreps/run_cmbreps_mean.log... ... clear! checking macs2.2.6-3-3.8_run_filterdup/run_filterdup.log... ... clear! checking macs2.2.6-3-3.8_run_filterdup/run_filterdup_d.log... ... clear! checking macs2.2.6-3-3.8_run_filterdup/run_filterdup_pe.log... ... clear! checking macs2.2.6-3-3.8_run_filterdup/run_filterdup_pe_d.log... ... clear! checking macs2.2.6-3-3.8_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking macs2.2.6-3-3.8_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking macs2.2.6-3-3.8_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking macs2.2.6-3-3.8_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.6-3-3.8_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking macs2.2.6-3-3.8_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking macs2.2.6-3-3.8_run_predictd/run_predictd.log... ... clear! checking macs2.2.6-3-3.8_run_randsample/run_randsample.log... ... clear! checking macs2.2.6-3-3.8_run_randsample/run_randsample_bampe.log... ... clear! checking macs2.2.6-3-3.8_run_randsample/run_randsample_bedpe.log... ... clear! checking macs2.2.6-3-3.8_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking macs2.2.6-3-3.8_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 14. compare with standard outputs 14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... ... success! 14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... ... success! 14.1.3 checking 50kcontigs run_filterdup_result.bed ... ... success! 14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... ... success! 14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... ... success! 14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... ... success! 14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... ... success! 14.4.1 checking bdgdiff common.bed ... ... success! 14.4.2 checking bdgdiff cond1.bed ... ... failed! Difference: 10c10 < chr22 17753011 17753262 cond1.bed10 10.91568 --- > chr22 17753011 17753262 cond1.bed10 10.91567 13c13 < chr22 18020285 18020538 cond1.bed13 15.57159 --- > chr22 18020285 18020538 cond1.bed13 15.57158 36c36 < chr22 19483443 19483663 cond1.bed36 13.70841 14.4.3 checking bdgdiff cond2.bed ... ... success! 14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... ... success! 14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... ... failed! Difference: 10c10 < chr22 17753011 17753262 run_bdgdiff_prefix_cond1_10 10.91568 --- > chr22 17753011 17753262 run_bdgdiff_prefix_cond1_10 10.91567 13c13 < chr22 18020285 18020538 run_bdgdiff_prefix_cond1_13 15.57159 --- > chr22 18020285 18020538 run_bdgdiff_prefix_cond1_13 15.57158 36c36 < chr22 19483443 19483663 run_bdgdiff_prefix_cond1_36 13.70841 14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... ... success! 14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... ... success! 14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... ... success! 14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... ... failed! Difference: 4c4 < chr22 17398270 17398731 run_callpeak_broad_peak_4 264 . 13.48574 29.21884 26.40472 --- > chr22 17398270 17398731 run_callpeak_broad_peak_4 264 . 13.48575 29.21884 26.40472 21c21 < chr22 18359202 18359447 run_callpeak_broad_peak_21 20 . 3.41527 4.29312 2.06036 --- > chr22 18359202 18359447 run_callpeak_broad_peak_21 20 . 3.41527 4.29313 2.06036 31c31 < chr22 18895703 18896357 run_callpeak_broad_peak_31 209 . 12.10957 23.65841 20.97121 14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... ... failed! Difference: 4c4 < chr22 17398270 17398731 run_callpeak_broad_peak_4 264 . 17398270 17398731 0 3 1,440,1 0,1,460 13.48574 29.21884 26.40472 --- > chr22 17398270 17398731 run_callpeak_broad_peak_4 264 . 17398270 17398731 0 3 1,440,1 0,1,460 13.48575 29.21884 26.40472 21c21 < chr22 18359202 18359447 run_callpeak_broad_peak_21 20 . 18359202 18359447 0 1 245 0 3.41527 4.29312 2.06036 --- > chr22 18359202 18359447 run_callpeak_broad_peak_21 20 . 18359202 18359447 0 1 245 0 3.41527 4.29313 2.06036 31c31 < chr22 18895703 18896357 run_callpeak_broad_peak_31 209 . 18895703 18896357 0 2 1,443 0,211 12.10957 23.65841 20.97121 14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... ... success! 14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... ... success! 14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... ... success! 14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... ... success! 14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... ... success! 14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... ... success! 14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... ... success! 14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... ... success! 14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... ... success! 14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... ... success! 14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... ... success! 14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... ... success! 14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... ... success! 14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... ... success! 14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... ... success! 14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... ... success! 14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... ... success! 14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... ... success! 14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... ... success! 14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... ... success! 14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... ... success! 14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... ... success! 14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... ... success! 14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... ... success! 14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... ... success! 14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... ... success! 14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... ... success! 14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... ... success! 14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... ... success! 14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... ... success! 14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... ... failed! Difference: 4c4 < chr22 17398268 17398740 run_callpeak_bampe_broad_peak_4 279 . 13.95538 30.73891 27.95395 --- > chr22 17398268 17398740 run_callpeak_bampe_broad_peak_4 279 . 13.95538 30.73891 27.95394 17c17 < chr22 18250666 18251256 run_callpeak_bampe_broad_peak_17 32 . 4.20173 5.49854 3.24534 --- > chr22 18250666 18251256 run_callpeak_bampe_broad_peak_17 32 . 4.20173 5.49854 3.24533 21c21 < chr22 18312606 18313184 run_callpeak_bampe_broad_peak_21 309 . 14.56135 33.80837 30.98637 14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... ... failed! Difference: 4c4 < chr22 17398268 17398740 run_callpeak_bampe_broad_peak_4 279 . 17398268 17398740 0 2 471,1 0,471 13.95538 30.73891 27.95395 --- > chr22 17398268 17398740 run_callpeak_bampe_broad_peak_4 279 . 17398268 17398740 0 2 471,1 0,471 13.95538 30.73891 27.95394 17c17 < chr22 18250666 18251256 run_callpeak_bampe_broad_peak_17 32 . 18250666 18251256 0 2 1,568 0,22 4.20173 5.49854 3.24534 --- > chr22 18250666 18251256 run_callpeak_bampe_broad_peak_17 32 . 18250666 18251256 0 2 1,568 0,22 4.20173 5.49854 3.24533 21c21 < chr22 18312606 18313184 run_callpeak_bampe_broad_peak_21 309 . 18312606 18313184 0 2 1,514 0,64 14.56135 33.80837 30.98637 14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... ... success! 14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... ... success! 14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... ... failed! Difference: 4c4 < chr22 17398268 17398740 run_callpeak_bedpe_broad_peak_4 279 . 13.95538 30.73891 27.95395 --- > chr22 17398268 17398740 run_callpeak_bedpe_broad_peak_4 279 . 13.95538 30.73891 27.95394 17c17 < chr22 18250666 18251256 run_callpeak_bedpe_broad_peak_17 32 . 4.20173 5.49854 3.24534 --- > chr22 18250666 18251256 run_callpeak_bedpe_broad_peak_17 32 . 4.20173 5.49854 3.24533 21c21 < chr22 18312606 18313184 run_callpeak_bedpe_broad_peak_21 309 . 14.56135 33.80837 30.98637 14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... ... failed! Difference: 4c4 < chr22 17398268 17398740 run_callpeak_bedpe_broad_peak_4 279 . 17398268 17398740 0 2 471,1 0,471 13.95538 30.73891 27.95395 --- > chr22 17398268 17398740 run_callpeak_bedpe_broad_peak_4 279 . 17398268 17398740 0 2 471,1 0,471 13.95538 30.73891 27.95394 17c17 < chr22 18250666 18251256 run_callpeak_bedpe_broad_peak_17 32 . 18250666 18251256 0 2 1,568 0,22 4.20173 5.49854 3.24534 --- > chr22 18250666 18251256 run_callpeak_bedpe_broad_peak_17 32 . 18250666 18251256 0 2 1,568 0,22 4.20173 5.49854 3.24533 21c21 < chr22 18312606 18313184 run_callpeak_bedpe_broad_peak_21 309 . 18312606 18313184 0 2 1,514 0,64 14.56135 33.80837 30.98637 14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... ... success! 14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... ... success! 14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... ... success! 14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... ... success! 14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... ... success! 14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... ... success! 14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... ... success! 14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... ... success! 14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... ... success! 14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... ... success! 14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... ... success! 14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... ... success! 14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... ... success! 14.11.1 checking cmbreps run_cmbreps_fisher.bdg ... ... success! 14.11.2 checking cmbreps run_cmbreps_max.bdg ... ... success! 14.11.3 checking cmbreps run_cmbreps_mean.bdg ... ... success! 14.12.1 checking filterdup run_filterdup_result.bed ... ... success! 14.12.2 checking filterdup run_filterdup_result_pe.bedpe ... ... success! 14.13.1 checking pileup run_pileup_CTRL.bed.bdg ... ... success! 14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... ... success! 14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... ... success! 14.13.4 checking pileup run_pileup_ChIP.bed.bdg ... ... success! 14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... ... success! 14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... ... success! 14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... ... success! 14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... ... success! make[1]: *** [debian/rules:36: override_dh_auto_test] Error 1 make[1]: Leaving directory '/<>' make: *** [debian/rules:14: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200131-1027 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 1362660 Build-Time: 1727 Distribution: focal-proposed Fail-Stage: build Host Architecture: arm64 Install-Time: 52 Job: macs_2.2.6-3.dsc Machine Architecture: arm64 Package: macs Package-Time: 1788 Source-Version: 2.2.6-3 Space: 1362660 Status: attempted Version: 2.2.6-3 -------------------------------------------------------------------------------- Finished at 20200131-1027 Build needed 00:29:48, 1362660k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18488434 Scanning for processes to kill in build PACKAGEBUILD-18488434