https://launchpad.net/ubuntu/+source/mafft/7.490-1/+build/22364553 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-020 4.15.0-161-generic #169-Ubuntu SMP Fri Oct 15 13:39:40 UTC 2021 s390x Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 2 Nov 17:27:40 ntpdate[1736]: adjust time server 10.211.37.1 offset 0.000792 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22364553 --image-type chroot /home/buildd/filecache-default/63391afefe2c3c1f68eb13dcf1e745f5d0398db6 Creating target for build PACKAGEBUILD-22364553 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22364553 Starting target for build PACKAGEBUILD-22364553 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22364553 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22364553 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22364553 Updating target for build PACKAGEBUILD-22364553 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [254 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [105 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main s390x Packages [1335 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe s390x Packages [12.5 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5510 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x Packages [385 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [132 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe s390x Packages [1853 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [905 kB] Fetched 23.7 MB in 5s (4783 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bsdutils ca-certificates cpp-11 dash debconf debianutils g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libblkid1 libcc1-0 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libisl23 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libseccomp2 libselinux1 libsmartcols1 libsqlite3-0 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libubsan1 libuuid1 libzstd1 lockfile-progs make mount ncurses-base ncurses-bin pkgbinarymangler sensible-utils tzdata usrmerge util-linux 66 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 158 MB of archives. After this operation, 388 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x bsdutils s390x 1:2.37.2-4ubuntu1 [81.0 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x debianutils s390x 5.5-1 [77.5 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x debconf all 1.5.79 [126 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x dash s390x 0.5.11+git20210903+057cd650a4ed-1 [92.6 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x grep s390x 3.7-1 [156 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libncursesw6 s390x 6.2+20210905-1 [142 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libncurses6 s390x 6.2+20210905-1 [109 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libtinfo6 s390x 6.2+20210905-1 [105 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x ncurses-bin s390x 6.2+20210905-1 [182 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libblkid1 s390x 2.37.2-4ubuntu1 [100 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libselinux1 s390x 3.1-3build3 [74.2 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libmount1 s390x 2.37.2-4ubuntu1 [119 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x util-linux s390x 2.37.2-4ubuntu1 [1055 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x ncurses-base all 6.2+20210905-1 [19.9 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libcc1-0 s390x 11.2.0-10ubuntu1 [52.8 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x gcc-11-base s390x 11.2.0-10ubuntu1 [21.0 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgcc-s1 s390x 11.2.0-10ubuntu1 [28.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgomp1 s390x 11.2.0-10ubuntu1 [113 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libitm1 s390x 11.2.0-10ubuntu1 [29.7 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libatomic1 s390x 11.2.0-10ubuntu1 [9018 B] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libasan6 s390x 11.2.0-10ubuntu1 [2247 kB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libubsan1 s390x 11.2.0-10ubuntu1 [911 kB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x g++-11 s390x 11.2.0-10ubuntu1 [47.7 MB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libstdc++-11-dev s390x 11.2.0-10ubuntu1 [2078 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgcc-11-dev s390x 11.2.0-10ubuntu1 [829 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x gcc-11 s390x 11.2.0-10ubuntu1 [49.8 MB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x cpp-11 s390x 11.2.0-10ubuntu1 [43.2 MB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libstdc++6 s390x 11.2.0-10ubuntu1 [689 kB] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libisl23 s390x 0.24-2 [699 kB] Get:30 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libmpc3 s390x 1.2.1-1 [47.6 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libzstd1 s390x 1.4.8+dfsg-3 [317 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgpg-error0 s390x 1.42-3 [67.6 kB] Get:33 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgcrypt20 s390x 1.9.4-3ubuntu2 [457 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libapt-pkg6.0 s390x 2.3.11 [869 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x gpgv s390x 2.2.27-2ubuntu1 [133 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libseccomp2 s390x 2.5.1-1ubuntu2 [47.9 kB] Get:37 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x apt s390x 2.3.11 [1366 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpam0g s390x 1.4.0-10ubuntu1 [60.2 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpam-modules-bin s390x 1.4.0-10ubuntu1 [40.2 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpam-modules s390x 1.4.0-10ubuntu1 [279 kB] Get:41 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x mount s390x 2.37.2-4ubuntu1 [113 kB] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libattr1 s390x 1:2.5.1-1 [13.3 kB] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libk5crypto3 s390x 1.18.3-7 [88.3 kB] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libkrb5support0 s390x 1.18.3-7 [32.2 kB] Get:45 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libkrb5-3 s390x 1.18.3-7 [347 kB] Get:46 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgssapi-krb5-2 s390x 1.18.3-7 [138 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libsmartcols1 s390x 2.37.2-4ubuntu1 [50.0 kB] Get:49 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libuuid1 s390x 2.37.2-4ubuntu1 [23.9 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main s390x libidn2-0 s390x 2.3.2-2 [66.3 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libp11-kit0 s390x 0.24.0-5 [258 kB] Get:52 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libtasn1-6 s390x 4.17.0-2 [43.9 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x sensible-utils all 0.0.17 [20.1 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main s390x usrmerge all 25ubuntu2 [54.7 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x ca-certificates all 20211016 [148 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main s390x libapparmor1 s390x 3.0.3-0ubuntu2 [37.3 kB] Get:57 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libsqlite3-0 s390x 3.36.0-2 [630 kB] Get:58 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x tzdata all 2021e-1ubuntu1 [343 kB] Get:59 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgdbm6 s390x 1.22-1 [35.3 kB] Get:60 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x gpg s390x 2.2.27-2ubuntu1 [505 kB] Get:61 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x gpgconf s390x 2.2.27-2ubuntu1 [94.0 kB] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x gpg-agent s390x 2.2.27-2ubuntu1 [206 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libgdbm-compat4 s390x 1.22-1 [6554 B] Get:64 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x lockfile-progs s390x 0.1.19 [9654 B] Get:65 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x make s390x 4.3-4ubuntu2 [181 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 158 MB in 4s (41.0 MB/s) (Reading database ... 13030 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.37.2-4ubuntu1_s390x.deb ... Unpacking bsdutils (1:2.37.2-4ubuntu1) over (1:2.36.1-8ubuntu1) ... Setting up bsdutils (1:2.37.2-4ubuntu1) ... (Reading database ... 13030 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1_s390x.deb ... Unpacking debianutils (5.5-1) over (4.11.2build1) ... Setting up debianutils (5.5-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... 13025 files and directories currently installed.) Preparing to unpack .../debconf_1.5.79_all.deb ... Unpacking debconf (1.5.79) over (1.5.77) ... Setting up debconf (1.5.79) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-1_s390x.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-1) over (0.5.11+git20210120+802ebd4-1build1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../archives/grep_3.7-1_s390x.deb ... Unpacking grep (3.7-1) over (3.7-0ubuntu1) ... Setting up grep (3.7-1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.2+20210905-1_s390x.deb ... Unpacking libncursesw6:s390x (6.2+20210905-1) over (6.2+20201114-2build2) ... Preparing to unpack .../libncurses6_6.2+20210905-1_s390x.deb ... Unpacking libncurses6:s390x (6.2+20210905-1) over (6.2+20201114-2build2) ... Preparing to unpack .../libtinfo6_6.2+20210905-1_s390x.deb ... Unpacking libtinfo6:s390x (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up libtinfo6:s390x (6.2+20210905-1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20210905-1_s390x.deb ... Unpacking ncurses-bin (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up ncurses-bin (6.2+20210905-1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libblkid1_2.37.2-4ubuntu1_s390x.deb ... Unpacking libblkid1:s390x (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libblkid1:s390x (2.37.2-4ubuntu1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-3build3_s390x.deb ... Unpacking libselinux1:s390x (3.1-3build3) over (3.1-3build2) ... Setting up libselinux1:s390x (3.1-3build3) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../libmount1_2.37.2-4ubuntu1_s390x.deb ... Unpacking libmount1:s390x (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libmount1:s390x (2.37.2-4ubuntu1) ... (Reading database ... 13024 files and directories currently installed.) Preparing to unpack .../util-linux_2.37.2-4ubuntu1_s390x.deb ... Unpacking util-linux (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up util-linux (2.37.2-4ubuntu1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20210905-1_all.deb ... Unpacking ncurses-base (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up ncurses-base (6.2+20210905-1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libcc1-0_11.2.0-10ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../gcc-11-base_11.2.0-10ubuntu1_s390x.deb ... Unpacking gcc-11-base:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up gcc-11-base:s390x (11.2.0-10ubuntu1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libgcc-s1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up libgcc-s1:s390x (11.2.0-10ubuntu1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../00-libgomp1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../01-libitm1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libitm1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../02-libatomic1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../03-libasan6_11.2.0-10ubuntu1_s390x.deb ... Unpacking libasan6:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../04-libubsan1_11.2.0-10ubuntu1_s390x.deb ... Unpacking libubsan1:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../05-g++-11_11.2.0-10ubuntu1_s390x.deb ... Unpacking g++-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../06-libstdc++-11-dev_11.2.0-10ubuntu1_s390x.deb ... Unpacking libstdc++-11-dev:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../07-libgcc-11-dev_11.2.0-10ubuntu1_s390x.deb ... Unpacking libgcc-11-dev:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../08-gcc-11_11.2.0-10ubuntu1_s390x.deb ... Unpacking gcc-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../09-cpp-11_11.2.0-10ubuntu1_s390x.deb ... Unpacking cpp-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../10-libstdc++6_11.2.0-10ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up libstdc++6:s390x (11.2.0-10ubuntu1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libisl23_0.24-2_s390x.deb ... Unpacking libisl23:s390x (0.24-2) over (0.24-1build1) ... Preparing to unpack .../libmpc3_1.2.1-1_s390x.deb ... Unpacking libmpc3:s390x (1.2.1-1) over (1.2.0-1build2) ... Preparing to unpack .../libzstd1_1.4.8+dfsg-3_s390x.deb ... Unpacking libzstd1:s390x (1.4.8+dfsg-3) over (1.4.8+dfsg-2.1build1) ... Setting up libzstd1:s390x (1.4.8+dfsg-3) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.42-3_s390x.deb ... Unpacking libgpg-error0:s390x (1.42-3) over (1.38-2build2) ... Setting up libgpg-error0:s390x (1.42-3) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.9.4-3ubuntu2_s390x.deb ... Unpacking libgcrypt20:s390x (1.9.4-3ubuntu2) over (1.8.7-5ubuntu2) ... Setting up libgcrypt20:s390x (1.9.4-3ubuntu2) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.11_s390x.deb ... Unpacking libapt-pkg6.0:s390x (2.3.11) over (2.3.9) ... Setting up libapt-pkg6.0:s390x (2.3.11) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.27-2ubuntu1_s390x.deb ... Unpacking gpgv (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Setting up gpgv (2.2.27-2ubuntu1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.1-1ubuntu2_s390x.deb ... Unpacking libseccomp2:s390x (2.5.1-1ubuntu2) over (2.5.1-1ubuntu1) ... Setting up libseccomp2:s390x (2.5.1-1ubuntu2) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.11_s390x.deb ... Unpacking apt (2.3.11) over (2.3.9) ... Setting up apt (2.3.11) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libpam0g_1.4.0-10ubuntu1_s390x.deb ... Unpacking libpam0g:s390x (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam0g:s390x (1.4.0-10ubuntu1) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.4.0-10ubuntu1_s390x.deb ... Unpacking libpam-modules-bin (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam-modules-bin (1.4.0-10ubuntu1) ... (Reading database ... 13017 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.4.0-10ubuntu1_s390x.deb ... Unpacking libpam-modules:s390x (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam-modules:s390x (1.4.0-10ubuntu1) ... Installing new version of config file /etc/security/namespace.conf ... Installing new version of config file /etc/security/pam_env.conf ... (Reading database ... 13018 files and directories currently installed.) Preparing to unpack .../mount_2.37.2-4ubuntu1_s390x.deb ... Unpacking mount (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Preparing to unpack .../libattr1_1%3a2.5.1-1_s390x.deb ... Unpacking libattr1:s390x (1:2.5.1-1) over (1:2.4.48-6build2) ... Setting up libattr1:s390x (1:2.5.1-1) ... Installing new version of config file /etc/xattr.conf ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.18.3-7_s390x.deb ... Unpacking libk5crypto3:s390x (1.18.3-7) over (1.18.3-6) ... Setting up libk5crypto3:s390x (1.18.3-7) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libkrb5support0_1.18.3-7_s390x.deb ... Unpacking libkrb5support0:s390x (1.18.3-7) over (1.18.3-6) ... Setting up libkrb5support0:s390x (1.18.3-7) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libkrb5-3_1.18.3-7_s390x.deb ... Unpacking libkrb5-3:s390x (1.18.3-7) over (1.18.3-6) ... Setting up libkrb5-3:s390x (1.18.3-7) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.18.3-7_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.18.3-7) over (1.18.3-6) ... Setting up libgssapi-krb5-2:s390x (1.18.3-7) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.4.0-10ubuntu1_all.deb ... Unpacking libpam-runtime (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam-runtime (1.4.0-10ubuntu1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.37.2-4ubuntu1_s390x.deb ... Unpacking libsmartcols1:s390x (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libsmartcols1:s390x (2.37.2-4ubuntu1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libuuid1_2.37.2-4ubuntu1_s390x.deb ... Unpacking libuuid1:s390x (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libuuid1:s390x (2.37.2-4ubuntu1) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.2-2_s390x.deb ... Unpacking libidn2-0:s390x (2.3.2-2) over (2.3.1-1build1) ... Setting up libidn2-0:s390x (2.3.2-2) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.0-5_s390x.deb ... Unpacking libp11-kit0:s390x (0.24.0-5) over (0.23.22-1build1) ... Setting up libp11-kit0:s390x (0.24.0-5) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.17.0-2_s390x.deb ... Unpacking libtasn1-6:s390x (4.17.0-2) over (4.16.0-2build1) ... Setting up libtasn1-6:s390x (4.17.0-2) ... (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) over (0.0.14) ... Preparing to unpack .../01-usrmerge_25ubuntu2_all.deb ... Unpacking usrmerge (25ubuntu2) over (25ubuntu1) ... Preparing to unpack .../02-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) over (20210119ubuntu1) ... Preparing to unpack .../03-libapparmor1_3.0.3-0ubuntu2_s390x.deb ... Unpacking libapparmor1:s390x (3.0.3-0ubuntu2) over (3.0.3-0ubuntu1) ... Preparing to unpack .../04-libsqlite3-0_3.36.0-2_s390x.deb ... Unpacking libsqlite3-0:s390x (3.36.0-2) over (3.35.5-1) ... Preparing to unpack .../05-tzdata_2021e-1ubuntu1_all.deb ... Unpacking tzdata (2021e-1ubuntu1) over (2021a-2ubuntu1) ... Preparing to unpack .../06-libgdbm6_1.22-1_s390x.deb ... Unpacking libgdbm6:s390x (1.22-1) over (1.19-2build1) ... Preparing to unpack .../07-gpg_2.2.27-2ubuntu1_s390x.deb ... Unpacking gpg (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../08-gpgconf_2.2.27-2ubuntu1_s390x.deb ... Unpacking gpgconf (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../09-gpg-agent_2.2.27-2ubuntu1_s390x.deb ... Unpacking gpg-agent (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../10-libgdbm-compat4_1.22-1_s390x.deb ... Unpacking libgdbm-compat4:s390x (1.22-1) over (1.19-2build1) ... Preparing to unpack .../11-lockfile-progs_0.1.19_s390x.deb ... Unpacking lockfile-progs (0.1.19) over (0.1.18build1) ... Preparing to unpack .../12-make_4.3-4ubuntu2_s390x.deb ... Unpacking make (4.3-4ubuntu2) over (4.3-4ubuntu1) ... Preparing to unpack .../13-pkgbinarymangler_149_all.deb ... Unpacking pkgbinarymangler (149) over (148) ... Setting up libapparmor1:s390x (3.0.3-0ubuntu2) ... Setting up libsqlite3-0:s390x (3.36.0-2) ... Setting up libgomp1:s390x (11.2.0-10ubuntu1) ... Setting up libasan6:s390x (11.2.0-10ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Nov 2 17:28:04 UTC 2021. Universal Time is now: Tue Nov 2 17:28:04 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:s390x (6.2+20210905-1) ... Setting up libmpc3:s390x (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:s390x (11.2.0-10ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libncursesw6:s390x (6.2+20210905-1) ... Setting up libubsan1:s390x (11.2.0-10ubuntu1) ... Setting up mount (2.37.2-4ubuntu1) ... Setting up sensible-utils (0.0.17) ... Setting up gpgconf (2.2.27-2ubuntu1) ... Setting up libisl23:s390x (0.24-2) ... Setting up libcc1-0:s390x (11.2.0-10ubuntu1) ... Setting up gpg (2.2.27-2ubuntu1) ... Setting up libitm1:s390x (11.2.0-10ubuntu1) ... Setting up libgdbm6:s390x (1.22-1) ... Setting up cpp-11 (11.2.0-10ubuntu1) ... Setting up gpg-agent (2.2.27-2ubuntu1) ... Setting up pkgbinarymangler (149) ... Setting up libgdbm-compat4:s390x (1.22-1) ... Setting up libgcc-11-dev:s390x (11.2.0-10ubuntu1) ... Setting up gcc-11 (11.2.0-10ubuntu1) ... Setting up libstdc++-11-dev:s390x (11.2.0-10ubuntu1) ... Setting up g++-11 (11.2.0-10ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22364553 s390x jammy-proposed -c chroot:build-PACKAGEBUILD-22364553 --arch=s390x --dist=jammy-proposed --nolog mafft_7.490-1.dsc Initiating build PACKAGEBUILD-22364553 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-161-generic #169-Ubuntu SMP Fri Oct 15 13:39:40 UTC 2021 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-020.buildd +==============================================================================+ | mafft 7.490-1 (s390x) Tue, 02 Nov 2021 17:28:07 +0000 | +==============================================================================+ Package: mafft Version: 7.490-1 Source Version: 7.490-1 Distribution: jammy-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22364553/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mafft_7.490-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/mafft-aKR6nL/mafft-7.490' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-aKR6nL' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-5G2wnu/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-5G2wnu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-5G2wnu/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-5G2wnu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-5G2wnu/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-5G2wnu/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 654 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-5G2wnu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [654 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 654 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13029 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13) Filtered Build-Depends: debhelper-compat (= 13) dpkg-deb: building package 'sbuild-build-depends-mafft-dummy' in '/<>/resolver-5G2wnu/apt_archive/sbuild-build-depends-mafft-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mafft-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-5G2wnu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-5G2wnu/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-5G2wnu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-5G2wnu/apt_archive ./ Sources [486 B] Get:5 copy:/<>/resolver-5G2wnu/apt_archive ./ Packages [566 B] Fetched 2015 B in 0s (0 B/s) Reading package lists... Reading package lists... Install mafft build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-mafft-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 17.8 MB of archives. After this operation, 64.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-5G2wnu/apt_archive ./ sbuild-build-depends-mafft-dummy 0.invalid.0 [658 B] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x bsdextrautils s390x 2.37.2-4ubuntu1 [72.2 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main s390x libuchardet0 s390x 0.0.7-1build1 [76.1 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main s390x groff-base s390x 1.22.4-7 [926 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main s390x libpipeline1 s390x 1.5.3-1build1 [23.0 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main s390x man-db s390x 2.9.4-2build1 [1177 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libelf1 s390x 0.185-2 [55.1 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main s390x libicu67 s390x 67.1-7ubuntu1 [10.0 MB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libxml2 s390x 2.9.12+dfsg-5 [711 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main s390x libmagic-mgc s390x 1:5.39-3build1 [237 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main s390x libmagic1 s390x 1:5.39-3build1 [87.7 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main s390x file s390x 1:5.39-3build1 [24.5 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main s390x gettext-base s390x 0.21-4ubuntu3 [38.4 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main s390x libsigsegv2 s390x 2.13-1ubuntu2 [14.6 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main s390x m4 s390x 1.4.18-5ubuntu1 [197 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main s390x autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x automake all 1:1.16.5-1 [558 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main s390x autopoint all 0.21-4ubuntu3 [422 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libdebhelper-perl all 13.3.4ubuntu3 [62.4 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main s390x libtool all 2.4.6-15build1 [164 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main s390x dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libfile-stripnondeterminism-perl all 1.12.0-2 [18.0 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x dh-strip-nondeterminism all 1.12.0-2 [5208 B] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x libdw1 s390x 0.185-2 [247 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main s390x debugedit s390x 1:5.0-0ubuntu2 [48.9 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main s390x dwz s390x 0.14-1build1 [104 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main s390x gettext s390x 0.21-4ubuntu3 [848 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu jammy-proposed/main s390x debhelper all 13.3.4ubuntu3 [921 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.8 MB in 2s (10.8 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13029 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-4ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../01-libuchardet0_0.0.7-1build1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_s390x.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.3-1build1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.3-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2build1_s390x.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../05-libelf1_0.185-2_s390x.deb ... Unpacking libelf1:s390x (0.185-2) ... Selecting previously unselected package libicu67:s390x. Preparing to unpack .../06-libicu67_67.1-7ubuntu1_s390x.deb ... Unpacking libicu67:s390x (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../07-libxml2_2.9.12+dfsg-5_s390x.deb ... Unpacking libxml2:s390x (2.9.12+dfsg-5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.39-3build1_s390x.deb ... Unpacking libmagic-mgc (1:5.39-3build1) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../09-libmagic1_1%3a5.39-3build1_s390x.deb ... Unpacking libmagic1:s390x (1:5.39-3build1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.39-3build1_s390x.deb ... Unpacking file (1:5.39-3build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.21-4ubuntu3_s390x.deb ... Unpacking gettext-base (0.21-4ubuntu3) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../12-libsigsegv2_2.13-1ubuntu2_s390x.deb ... Unpacking libsigsegv2:s390x (2.13-1ubuntu2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-5ubuntu1_s390x.deb ... Unpacking m4 (1.4.18-5ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1_all.deb ... Unpacking automake (1:1.16.5-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-4ubuntu3_all.deb ... Unpacking autopoint (0.21-4ubuntu3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.3.4ubuntu3_all.deb ... Unpacking libdebhelper-perl (13.3.4ubuntu3) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.6-15build1_all.deb ... Unpacking libtool (2.4.6-15build1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../22-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.12.0-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.12.0-2_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-2) ... Selecting previously unselected package libdw1:s390x. Preparing to unpack .../25-libdw1_0.185-2_s390x.deb ... Unpacking libdw1:s390x (0.185-2) ... Selecting previously unselected package debugedit. Preparing to unpack .../26-debugedit_1%3a5.0-0ubuntu2_s390x.deb ... Unpacking debugedit (1:5.0-0ubuntu2) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.14-1build1_s390x.deb ... Unpacking dwz (0.14-1build1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-4ubuntu3_s390x.deb ... Unpacking gettext (0.21-4ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.3.4ubuntu3_all.deb ... Unpacking debhelper (13.3.4ubuntu3) ... Selecting previously unselected package sbuild-build-depends-mafft-dummy. Preparing to unpack .../32-sbuild-build-depends-mafft-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-mafft-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.3-1build1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:s390x (67.1-7ubuntu1) ... Setting up libmagic-mgc (1:5.39-3build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4ubuntu3) ... Setting up libmagic1:s390x (1:5.39-3build1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.39-3build1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:s390x (2.13-1ubuntu2) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libuchardet0:s390x (0.0.7-1build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:s390x (0.185-2) ... Setting up libxml2:s390x (2.9.12+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up libdw1:s390x (0.185-2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libtool (2.4.6-15build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up automake (1:1.16.5-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4ubuntu3) ... Setting up sbuild-build-depends-mafft-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-161-generic s390x (s390x) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-10ubuntu1 gcc-11_11.2.0-10ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-10ubuntu1 libstdc++6_11.2.0-10ubuntu1 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 binutils-s390x-linux-gnu_2.37-7ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-10ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.79 debhelper_13.3.4ubuntu3 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu3 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-10ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-10ubuntu1 gcc-11-base_11.2.0-10ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.27-2ubuntu1 gpg-agent_2.2.27-2ubuntu1 gpgconf_2.2.27-2ubuntu1 gpgv_2.2.27-2ubuntu1 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapparmor1_3.0.3-0ubuntu2 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-10ubuntu1 libassuan0_2.5.5-1 libatomic1_11.2.0-10ubuntu1 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37-7ubuntu1 libblkid1_2.37.2-4ubuntu1 libbz2-1.0_1.0.8-4ubuntu4 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-10ubuntu1 libcom-err2_1.46.3-1ubuntu3 libcrypt-dev_1:4.4.18-4ubuntu2 libcrypt1_1:4.4.18-4ubuntu2 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.3.4ubuntu3 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-2 libelf1_0.185-2 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-2 libgcc-11-dev_11.2.0-10ubuntu1 libgcc-s1_11.2.0-10ubuntu1 libgcrypt20_1.9.4-3ubuntu2 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-10ubuntu1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1build1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu3 libisl23_0.24-2 libitm1_11.2.0-10ubuntu1 libjson-c5_0.15-2build3 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu4 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.39-3build1 libmagic1_1:5.39-3build1 libmount1_2.37.2-4ubuntu1 libmpc3_1.2.1-1 libmpfr6_4.1.0-3build2 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10ubuntu1 libpam-modules-bin_1.4.0-10ubuntu1 libpam-runtime_1.4.0-10ubuntu1 libpam0g_1.4.0-10ubuntu1 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1build1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libreadline8_8.1-2build1 libseccomp2_2.5.1-1ubuntu2 libselinux1_3.1-3build3 libsemanage-common_3.1-1ubuntu3 libsemanage1_3.1-1ubuntu3 libsepol1_3.1-1ubuntu2 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.37.2-4ubuntu1 libsqlite3-0_3.36.0-2 libss2_1.46.3-1ubuntu3 libssl1.1_1.1.1l-1ubuntu1 libstdc++-11-dev_11.2.0-10ubuntu1 libstdc++6_11.2.0-10ubuntu1 libsub-override-perl_0.09-2 libsystemd0_248.3-1ubuntu8 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libubsan1_11.2.0-10ubuntu1 libuchardet0_0.0.7-1build1 libudev1_248.3-1ubuntu8 libunistring2_0.9.10-6 libuuid1_2.37.2-4ubuntu1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.13.0-19.19 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 mount_2.37.2-4ubuntu1 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mafft-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Nov 2 13:33:52 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mafft_7.490-1.dsc dpkg-source: info: extracting mafft in /<> dpkg-source: info: unpacking mafft_7.490.orig.tar.gz dpkg-source: info: unpacking mafft_7.490-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22364553 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22364553 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22364553 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mafft dpkg-buildpackage: info: source version 7.490-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --sourcedirectory=core dh_auto_clean -O--sourcedirectory=core cd core && make -j4 clean make[1]: Entering directory '/<>/core' rm -f *.o *.a *.exe *~ mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version mafft mafft-homologs.rb mafft-sparsecore.rb libdisttbfast.so libdisttbfast.dylib libdisttbfast.dll *.gcda *.gcno make[1]: Leaving directory '/<>/core' dh_autoreconf_clean -O--sourcedirectory=core debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -rf binaries/* scripts/* dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --sourcedirectory=core dh_update_autotools_config -a -O--sourcedirectory=core dh_autoreconf -a -O--sourcedirectory=core dh_auto_configure -a -O--sourcedirectory=core debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ PREFIX=/usr/lib/mafft \ ENABLE_MULTITHREAD=-Denablemultithread \ LIBDIR=/usr/lib/mafft/lib/mafft \ CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now" cd core && make -j4 "INSTALL=install --strip-program=true" PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/core' cp mafftash_premafft.tmpl mafftash_premafft.pl cp seekquencer_premafft.tmpl seekquencer_premafft.pl gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mtxutl.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mltaln9.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tddis.c io.c: In function ‘PreRead’: io.c:1120:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1120 | fgets( b, B-1, fp ); *locnjob = atoi( b ); | ^~~~~~~~~~~~~~~~~~~ io.c:1125:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1125 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:1129:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1129 | fgets( b, B-1, fp ); nleni = atoi( b ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘FRead’: io.c:1165:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1165 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:1255:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1255 | fgets( b, B-1, fp ); nlen[i] = atoi( b ); /* seq i no nagasa */ | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf_part_pointer’: io.c:2690:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2690 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2692:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2692 | fgets( b, B, fp ); nseq0 = atoi( b ); // 2020/Oct/23 | ^~~~~~~~~~~~~~~~~ io.c:2698:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2698 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf_pointer’: io.c:2728:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2728 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2729:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2729 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) | ^~~~~~~~~~~~~~~~~ io.c:2734:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2734 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf’: io.c:2762:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2762 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2763:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2763 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2764:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2764 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_double’: io.c:2792:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2792 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2793:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2793 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2794:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2794 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_int’: io.c:2822:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2822 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2823:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2823 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2824:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2824 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_pointer’: io.c:2853:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2853 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2854:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2854 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2855:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2855 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2’: io.c:2883:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2883 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2884:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2884 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2885:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2885 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta_sub’: io.c:3085:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3085 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3100:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3100 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadSsearch’: io.c:3119:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3119 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7_avscore’: io.c:3247:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3247 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3254:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3254 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3255:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3255 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7_scoreonly’: io.c:3370:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3370 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3377:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3377 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3378:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3378 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7’: io.c:3488:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3488 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3495:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3495 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3496:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3496 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34noalign’: io.c:3520:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3520 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_nuc’: io.c:3557:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3557 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3583:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3583 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10’: io.c:3696:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3696 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3720:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3720 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly_nucbk’: io.c:3823:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3823 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly_nuc’: io.c:3873:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3873 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly’: io.c:3934:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3934 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34’: io.c:3990:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3990 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:4016:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4016 | fgets( b, B-1, fp ); // initn: | ^~~~~~~~~~~~~~~~~~~ io.c:4019:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4019 | fgets( b, B-1, fp ); // Smith-Waterman score | ^~~~~~~~~~~~~~~~~~~ io.c:4031:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4031 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta3’: io.c:4053:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4053 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta’: io.c:4078:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4078 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadOpt’: io.c:4115:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4115 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadOpt2’: io.c:4136:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4136 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘readOtherOptions’: io.c:4232:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4232 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘loadaamtx’: io.c:5490:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5490 | fgets( inorder, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5522:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5522 | fgets( line, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5545:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5545 | fgets( line, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readsubalignmentstable’: io.c:5701:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5701 | fgets( line, linelen-1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5722:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5722 | fgets( line, linelen-1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readmccaskill’: io.c:5776:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5776 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5786:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5786 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readpairfoldalign’: io.c:5845:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5845 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5858:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5858 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5865:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5865 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5879:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5879 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5885:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5885 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readexternalanchors’: io.c:6323:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 6323 | fgets( buf, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function ‘check_guidetreefile’: mltaln9.c:2850:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2850 | fgets( string, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function ‘readlocalhomtable2_single_bin_noseek’: mltaln9.c:15178:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15178 | fread( &size, sizeof( int ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15179:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15179 | fread( &opt, sizeof( double ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15182:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15182 | fread( m, size*sizeof( int ), 3, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15218:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15218 | fread( &c, sizeof( char ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c constants.c In file included from constants.c:7: blosum.c: In function ‘overridematrix’: blosum.c:370:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 370 | fgets( buf, 499, fp ); | ^~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nj.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c partSalignmm.c In file included from /usr/include/stdio.h:888, from mltaln.h:12, from mltaln9.c:1: In function ‘fgets’, inlined from ‘check_guidetreefile’ at mltaln9.c:2850:2: /usr/include/s390x-linux-gnu/bits/stdio2.h:270:16: warning: call to ‘*__fgets_chk’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 270 | return __fgets_chk_warn (__s, __glibc_objsize (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalignmm.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rna.c rna.c: In function ‘rnaalifoldcall’: rna.c:225:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | system( cmd ); | ^~~~~~~~~~~~~ rna.c:245:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ rna.c:285:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 285 | system( cmd ); | ^~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Salignmm.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Dalignmm.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign_localhom.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Galign11.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalign11.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c genalign11.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalignmm.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fftFunctions.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tditeration.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dvtditr.c dvtditr.c: In function ‘main’: dvtditr.c:1020:33: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1020 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c defs.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SAalignmm.c -o SAalignmm.o gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c treeOperation.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addfunctions.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndfast7.c dndfast7.c: In function ‘main’: dndfast7.c:326:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | system( com ); | ^~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndblast.c dndblast.c: In function ‘main’: dndblast.c:201:25: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | system( com ); | ^~~~~~~~~~~~~ dndblast.c:382:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 382 | system( com ); | ^~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sextet5.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-distance.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalign11.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c suboptalign11.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalignmain.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalign.c pairlocalalign.c: In function ‘calllast_once’: pairlocalalign.c:1056:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1056 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c:1092:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1092 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readlastresx’: pairlocalalign.c:608:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 608 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘calllast_fast’: pairlocalalign.c:981:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 981 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘lastcallthread’: pairlocalalign.c:872:33: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 872 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readlastresx_singleq’: pairlocalalign.c:374:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 374 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readhat4’: pairlocalalign.c:1532:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1532 | fgets( oneline, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1544:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1544 | fgets( oneline, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘recalllara’: pairlocalalign.c:1245:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1245 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘callmxscarna_giving_bpp’: pairlocalalign.c:1408:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1408 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1410:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1410 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1430:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1430 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1451:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1451 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1465:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1465 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1485:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1485 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1487:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1487 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘calldafs_giving_bpp’: pairlocalalign.c:1291:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1291 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1293:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1293 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1313:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1313 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1334:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1334 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1344:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1344 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1364:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1364 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1366:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1366 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1368:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1368 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘pairalign_node’: pairlocalalign.c:3467:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3467 | system( "rm -rf hat3dir" ); // toriaezu | ^~~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3468:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3468 | system( "mkdir hat3dir" ); // toriaezu | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3473:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3473 | system( fn ); | ^~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c multi2hat3s.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairash.c pairash.c: In function ‘prepareash’: pairash.c:639:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 639 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:681:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 681 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘callrash’: pairash.c:485:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 485 | system( com ); | ^~~~~~~~~~~~~ pairash.c: In function ‘readrash’: pairash.c:277:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 277 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:284:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 284 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:289:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:294:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 294 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘preparetmalign’: pairash.c:530:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 530 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:576:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 576 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:587:25: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 587 | system( command ); | ^~~~~~~~~~~~~~~~~ pairash.c: In function ‘checkcbeta’: pairash.c:321:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 321 | fgets( linec, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘calltmalign’: pairash.c:347:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | system( com ); | ^~~~~~~~~~~~~ pairash.c:356:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 356 | fgets( com, 100, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘readtmalign’: pairash.c:228:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 228 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:232:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:235:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:238:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addsingle.c pairash.c: In function ‘callrash.constprop.0’: pairash.c:428:43: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] 428 | sprintf( cachefile, "%s/%s.%s.rash", cachedir, fname1, fname2 ); | ^ In file included from /usr/include/stdio.h:888, from mltaln.h:12, from pairash.c:1: /usr/include/s390x-linux-gnu/bits/stdio2.h:38:10: note: ‘__sprintf_chk’ output 8 or more bytes (assuming 10007) into a destination of size 10000 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ pairash.c:484:36: warning: ‘%s’ directive writing up to 9999 bytes into a region of size 9996 [-Wformat-overflow=] 484 | sprintf( com, "cat %s > %s.rashout", cachefile, pairid ); | ^~ ~~~~~~~~~ In file included from /usr/include/stdio.h:888, from mltaln.h:12, from pairash.c:1: /usr/include/s390x-linux-gnu/bits/stdio2.h:38:10: note: ‘__sprintf_chk’ output between 16 and 11014 bytes into a destination of size 10000 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -o maffttext2hex maffttext2hex.c -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread pairash.c: In function ‘calltmalign.constprop.0’: pairash.c:346:41: warning: ‘%s’ directive writing up to 9999 bytes into a region of size 9991 [-Wformat-overflow=] 346 | sprintf( com, "mkdir -p %s", cachedir ); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:888, from mltaln.h:12, from pairash.c:1: /usr/include/s390x-linux-gnu/bits/stdio2.h:38:10: note: ‘__sprintf_chk’ output between 10 and 10009 bytes into a destination of size 10000 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ pairash.c:349:45: warning: ‘-’ directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] 349 | sprintf( cachefile, "%s/%s%s-%s%s", cachedir, fname1, chain1, fname2, chain2 ); | ^ In file included from /usr/include/stdio.h:888, from mltaln.h:12, from pairash.c:1: /usr/include/s390x-linux-gnu/bits/stdio2.h:38:10: note: ‘__sprintf_chk’ output 3 or more bytes (assuming 10002) into a destination of size 10000 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ maffttext2hex.c: In function ‘main’: maffttext2hex.c:55:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets( (char *)buf, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -o hex2maffttext hex2maffttext.c -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splittbfast.c splittbfast.c: In function ‘main’: splittbfast.c:3218:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3218 | system( com ); | ^~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c disttbfast.c disttbfast.c: In function ‘disttbfast’: disttbfast.c:4578:41: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4578 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tbfast.c tbfast.c: In function ‘main’: tbfast.c:3249:33: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3249 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nodepair.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-profile.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c f2cl.c f2cl.c: In function ‘main’: f2cl.c:287:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 287 | fgets( gett, B-1, orderfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mccaskillwrap.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c contrafoldwrap.c mccaskillwrap.c: In function ‘main’: mccaskillwrap.c:372:25: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | system( "tr -d '\\r' < _mccaskillinorg > _mccaskillin" ); // for cygwin, wakaran | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mccaskillwrap.c: In function ‘athread’: mccaskillwrap.c:115:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 115 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c:117:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 117 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c:129:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ mccaskillwrap.c:155:25: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c: In function ‘readrawmccaskill’: mccaskillwrap.c:46:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ contrafoldwrap.c: In function ‘readcontrafold’: contrafoldwrap.c:57:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c countlen.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq2regtable.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c regtable2seq.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c score.c regtable2seq.c: In function ‘readereg’: regtable2seq.c:69:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c:97:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c: In function ‘readreg’: regtable2seq.c:120:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 120 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getlag.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndpre.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setcore.c gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o filter.o filter.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replaceu.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c restoreu.c gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setdirection.c restoreu.c: In function ‘main’: restoreu.c:177:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 177 | fgets( gett, 999, dlfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~ setdirection.c: In function ‘main’: setdirection.c:132:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 132 | fgets( line, 99, difp ); | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c makedirectionlist.c gcc -o version version.c -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread sed "s:_LIBDIR:/usr/lib/mafft/lib/mafft:" mafft.tmpl > mafft sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-homologs.tmpl > mafft-homologs.rb sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-sparsecore.tmpl > mafft-sparsecore.rb gcc -o dvtditr mtxutl.o io.o mltaln9.o tddis.o constants.o nj.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o MSalignmm.o fftFunctions.o fft.o tditeration.o dvtditr.o defs.o SAalignmm.o treeOperation.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o dndfast7 dndfast7.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o dndblast dndblast.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o sextet5 io.o constants.o mtxutl.o mltaln9.o tddis.o sextet5.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o mafft-distance io.o constants.o mtxutl.o mltaln9.o tddis.o mafft-distance.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o pairlocalalign mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairlocalalignmain.o pairlocalalign.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o multi2hat3s mtxutl.o io.o mltaln9.o tddis.o constants.o multi2hat3s.o defs.o fft.o fftFunctions.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o pairash mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairash.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o addsingle mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o addsingle.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o splittbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o splittbfast.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o disttbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o disttbfast.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o tbfast mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o tbfast.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread In function ‘fgets’, inlined from ‘check_guidetreefile’ at mltaln9.c:2850:2, inlined from ‘disttbfast.constprop’ at disttbfast.c:3684:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:270:16: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 270 | return __fgets_chk_warn (__s, __glibc_objsize (__s), __n, __stream); | ^ In function ‘fgets’, inlined from ‘check_guidetreefile’ at mltaln9.c:2850:2: /usr/include/s390x-linux-gnu/bits/stdio2.h:270:16: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 270 | return __fgets_chk_warn (__s, __glibc_objsize (__s), __n, __stream); | ^ gcc -o nodepair mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o nodepair.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o mafft-profile io.o mtxutl.o mltaln9.o tddis.o constants.o partSalignmm.o MSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o SAalignmm.o Galign11.o Lalign11.o genalign11.o Falign.o Falign_localhom.o fftFunctions.o fft.o mafft-profile.o defs.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o f2cl mtxutl.o io.o f2cl.o constants.o defs.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o mccaskillwrap mtxutl.o io.o mccaskillwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o contrafoldwrap mtxutl.o io.o contrafoldwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o countlen mtxutl.o io.o countlen.o defs.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o seq2regtable mtxutl.o io.o seq2regtable.o defs.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o regtable2seq mtxutl.o io.o regtable2seq.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o score io.o mtxutl.o mltaln9.o score.o constants.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o getlag mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o Dalignmm.o getlag.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o dndpre dndpre.o io.o constants.o mtxutl.o mltaln9.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o setcore mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o setcore.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o filter mtxutl.o io.o filter.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o replaceu mtxutl.o io.o replaceu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o restoreu mtxutl.o io.o restoreu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o setdirection mtxutl.o io.o setdirection.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread gcc -o makedirectionlist mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o makedirectionlist.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -lm -lpthread cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. make[2]: Leaving directory '/<>/core' make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=core create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=core dh_prep -a -O--sourcedirectory=core debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1 LIBDIR=/usr/lib/mafft/lib/mafft cd core && make -j4 install DESTDIR=/<>/debian/mafft AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1 LIBDIR=/usr/lib/mafft/lib/mafft make[2]: Entering directory '/<>/core' cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. mkdir -p /<>/debian/mafft/usr/lib/mafft/lib/mafft chmod 755 /<>/debian/mafft/usr/lib/mafft/lib/mafft mkdir -p /<>/debian/mafft/usr/lib/mafft/bin chmod 755 /<>/debian/mafft/usr/lib/mafft/bin chmod 755 mafft mafft-homologs.rb mafft-sparsecore.rb install --strip-program=true mafft mafft-homologs.rb mafft-sparsecore.rb /<>/debian/mafft/usr/lib/mafft/bin install: WARNING: ignoring --strip-program option as -s option was not specified chmod 755 dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ||: # in MinGW, it's ok if this fails strip dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ||: # may fail for dash_client on mac. install --strip-program=true dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true mafftash_premafft.pl seekquencer_premafft.pl /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified ( cd /<>/debian/mafft/usr/lib/mafft/bin; \ rm -f linsi ginsi einsi fftns fftnsi nwns nwnsi xinsi qinsi; \ rm -f mafft-linsi mafft-ginsi mafft-einsi mafft-fftns mafft-fftnsi mafft-nwns mafft-nwnsi mafft-xinsi mafft-qinsi mafft-randomcore.rb ; \ ln -s mafft linsi; ln -s mafft ginsi; ln -s mafft fftns; \ ln -s mafft fftnsi; ln -s mafft nwns; ln -s mafft nwnsi; \ ln -s mafft einsi; \ ln -s mafft mafft-linsi; ln -s mafft mafft-ginsi; ln -s mafft mafft-fftns; \ ln -s mafft mafft-fftnsi; ln -s mafft mafft-nwns; ln -s mafft mafft-nwnsi; \ ln -s mafft mafft-einsi; ln -s mafft mafft-xinsi; ln -s mafft mafft-qinsi;\ rm -f mafft-profile mafft-profile.exe; ln -s /usr/lib/mafft/lib/mafft/mafft-profile .; \ rm -f mafft-distance mafft-distance.exe; ln -s /usr/lib/mafft/lib/mafft/mafft-distance . ) mkdir -p /<>/debian/mafft/usr/share/man/man1 chmod 755 /<>/debian/mafft/usr/share/man/man1 install --strip-program=true -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified make[2]: Leaving directory '/<>/core' rm debian/mafft/usr/lib/mafft/lib/mafft/*.1 make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=core dh_installchangelogs -a -O--sourcedirectory=core dh_installman -a -O--sourcedirectory=core dh_installsystemduser -a -O--sourcedirectory=core dh_perl -a -O--sourcedirectory=core dh_link -a -O--sourcedirectory=core dh_strip_nondeterminism -a -O--sourcedirectory=core debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -X test/sample make[1]: Leaving directory '/<>' dh_fixperms -a -O--sourcedirectory=core dh_missing -a -O--sourcedirectory=core dh_dwz -a -a -O--sourcedirectory=core dwz: debian/mafft/usr/lib/mafft/lib/mafft/addsingle: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/contrafoldwrap: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/countlen: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/disttbfast: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/dndblast: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/dndfast7: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/dndpre: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/dvtditr: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/f2cl: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/filter: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/getlag: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/hex2maffttext: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/mafft-distance: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/mafft-profile: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/maffttext2hex: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/makedirectionlist: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/mccaskillwrap: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/multi2hat3s: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/nodepair: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/pairash: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/pairlocalalign: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/regtable2seq: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/replaceu: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/restoreu: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/score: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/seq2regtable: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/setcore: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/setdirection: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/sextet5: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/splittbfast: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/tbfast: .debug_info section not present dwz: debian/mafft/usr/lib/mafft/lib/mafft/version: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -a -a -O--sourcedirectory=core dh_makeshlibs -a -a -O--sourcedirectory=core dh_shlibdeps -a -a -O--sourcedirectory=core dh_installdeb -a -O--sourcedirectory=core dh_gencontrol -a -O--sourcedirectory=core dh_md5sums -a -O--sourcedirectory=core dh_builddeb -a -O--sourcedirectory=core INFO: pkgstriptranslations version 149 pkgstriptranslations: processing mafft (in debian/mafft); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mafft/DEBIAN/control, package mafft, directory debian/mafft pkgstripfiles: Truncating usr/share/doc/mafft/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package mafft ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mafft' in '../mafft_7.490-1_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../mafft_7.490-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-02T17:28:54Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mafft_7.490-1_s390x.changes: ---------------------------- Format: 1.8 Date: Tue, 02 Nov 2021 19:00:24 +0530 Source: mafft Binary: mafft Built-For-Profiles: noudeb Architecture: s390x Version: 7.490-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.490-1) unstable; urgency=medium . * New upstream version 7.490 * Bump Standards-Version to 4.6.0 (no changes needed) Checksums-Sha1: 26e66484db4151fc9efc5cc0cf40fa1db32a80ec 5325 mafft_7.490-1_s390x.buildinfo 1e292de69978853602fe9995e1286a499268d644 747114 mafft_7.490-1_s390x.deb Checksums-Sha256: 87228c3227db3f48285a61171e6fdb290fa060a714e41a49c1554fc88fd005b6 5325 mafft_7.490-1_s390x.buildinfo 9c0f3b8fa7c39e6951350bcc434cb26699a02a3295777c91f4d1b3f922229bbb 747114 mafft_7.490-1_s390x.deb Files: ed6c1a49334652d463914ffb96f98b11 5325 science optional mafft_7.490-1_s390x.buildinfo c8738369e9a96ea9a06d1ab6fb012591 747114 science optional mafft_7.490-1_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: mafft Binary: mafft Architecture: s390x Version: 7.490-1 Checksums-Md5: c8738369e9a96ea9a06d1ab6fb012591 747114 mafft_7.490-1_s390x.deb Checksums-Sha1: 1e292de69978853602fe9995e1286a499268d644 747114 mafft_7.490-1_s390x.deb Checksums-Sha256: 9c0f3b8fa7c39e6951350bcc434cb26699a02a3295777c91f4d1b3f922229bbb 747114 mafft_7.490-1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Tue, 02 Nov 2021 17:28:54 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu1), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-7ubuntu1), binutils-common (= 2.37-7ubuntu1), binutils-s390x-linux-gnu (= 2.37-7ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-10ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-1), debconf (= 1.5.79), debhelper (= 13.3.4ubuntu3), debianutils (= 5.5-1), debugedit (= 1:5.0-0ubuntu2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-2), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.39-3build1), findutils (= 4.8.0-1ubuntu2), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-10ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-10ubuntu1), gcc-11-base (= 11.2.0-10ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-10ubuntu1), libatomic1 (= 11.2.0-10ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.37-7ubuntu1), libblkid1 (= 2.37.2-4ubuntu1), libbz2-1.0 (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-10ubuntu1), libcom-err2 (= 1.46.3-1ubuntu3), libcrypt-dev (= 1:4.4.18-4ubuntu2), libcrypt1 (= 1:4.4.18-4ubuntu2), libctf-nobfd0 (= 2.37-7ubuntu1), libctf0 (= 2.37-7ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.3.4ubuntu3), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.185-2), libelf1 (= 0.185-2), libfile-stripnondeterminism-perl (= 1.12.0-2), libgcc-11-dev (= 11.2.0-10ubuntu1), libgcc-s1 (= 11.2.0-10ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgomp1 (= 11.2.0-10ubuntu1), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libicu67 (= 67.1-7ubuntu1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-10ubuntu1), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.39-3build1), libmagic1 (= 1:5.39-3build1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libpam-modules (= 1.4.0-10ubuntu1), libpam-modules-bin (= 1.4.0-10ubuntu1), libpam-runtime (= 1.4.0-10ubuntu1), libpam0g (= 1.4.0-10ubuntu1), libpcre2-8-0 (= 10.37-0ubuntu2), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.3-1build1), libseccomp2 (= 2.5.1-1ubuntu2), libselinux1 (= 3.1-3build3), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.37.2-4ubuntu1), libssl1.1 (= 1.1.1l-1ubuntu1), libstdc++-11-dev (= 11.2.0-10ubuntu1), libstdc++6 (= 11.2.0-10ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 248.3-1ubuntu8), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libubsan1 (= 11.2.0-10ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4ubuntu1), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.13.0-19.19), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), util-linux (= 2.37.2-4ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1635859824" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mafft_7.490-1_s390x.deb ----------------------- new Debian package, version 2.0. size 747114 bytes: control archive=2369 bytes. 1465 bytes, 31 lines control 3848 bytes, 55 lines md5sums Package: mafft Version: 7.490-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3805 Depends: libc6 (>= 2.34), perl:any Recommends: blast2, libwww-perl, lynx, ruby Enhances: t-coffee Section: science Priority: optional Homepage: https://mafft.cbrc.jp/alignment/software/ Description: Multiple alignment program for amino acid or nucleotide sequences MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: * L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences), and five speed-oriented methods: * FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm). drwxr-xr-x root/root 0 2021-11-02 13:30 ./ drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/ drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/bin/ lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/bin/mafft -> ../lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/bin/mafft-homologs -> ../lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/bin/mafft-profile -> ../lib/mafft/bin/mafft-profile drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/lib/ drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/lib/mafft/ drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/ lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/einsi -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/fftns -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/fftnsi -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/ginsi -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/linsi -> mafft -rwxr-xr-x root/root 106862 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-distance -> ../lib/mafft/mafft-distance lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-einsi -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-fftns -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-fftnsi -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-ginsi -> mafft -rwxr-xr-x root/root 11551 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-linsi -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-nwns -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-nwnsi -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-profile -> ../lib/mafft/mafft-profile lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-qinsi -> mafft -rwxr-xr-x root/root 7788 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-sparsecore.rb lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/mafft-xinsi -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/nwns -> mafft lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/lib/mafft/bin/nwnsi -> mafft drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/lib/mafft/lib/ drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/ -rwxr-xr-x root/root 282824 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/addsingle -rwxr-xr-x root/root 57424 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/contrafoldwrap -rwxr-xr-x root/root 10184 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/countlen -rwxr-xr-x root/root 336064 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/disttbfast -rwxr-xr-x root/root 69712 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/dndblast -rwxr-xr-x root/root 69712 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/dndfast7 -rwxr-xr-x root/root 69720 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/dndpre -rwxr-xr-x root/root 381136 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/dvtditr -rwxr-xr-x root/root 65616 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/f2cl -rwxr-xr-x root/root 14280 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/filter -rwxr-xr-x root/root 139424 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/getlag -rwxr-xr-x root/root 10040 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/hex2maffttext -rwxr-xr-x root/root 65616 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/mafft-distance -rwxr-xr-x root/root 180392 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/mafft-profile -rwxr-xr-x root/root 10475 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/mafftash_premafft.pl -rwxr-xr-x root/root 10040 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/maffttext2hex -rwxr-xr-x root/root 73904 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/makedirectionlist -rwxr-xr-x root/root 61520 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/mccaskillwrap -rwxr-xr-x root/root 73816 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/multi2hat3s -rwxr-xr-x root/root 123064 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/nodepair -rwxr-xr-x root/root 82008 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/pairash -rwxr-xr-x root/root 233648 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/pairlocalalign -rwxr-xr-x root/root 18448 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/regtable2seq -rwxr-xr-x root/root 14280 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/replaceu -rwxr-xr-x root/root 18376 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/restoreu -rwxr-xr-x root/root 57424 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/score -rwxr-xr-x root/root 15541 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/seekquencer_premafft.pl -rwxr-xr-x root/root 18376 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/seq2regtable -rwxr-xr-x root/root 77912 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/setcore -rwxr-xr-x root/root 18456 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/setdirection -rwxr-xr-x root/root 61520 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/sextet5 -rwxr-xr-x root/root 221368 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/splittbfast -rwxr-xr-x root/root 426192 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/tbfast -rwxr-xr-x root/root 5944 2021-11-02 13:30 ./usr/lib/mafft/lib/mafft/version drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/share/ drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/share/doc/mafft/ -rw-r--r-- root/root 939 2021-11-02 13:30 ./usr/share/doc/mafft/changelog.Debian.gz -rw-r--r-- root/root 2013 2021-11-02 13:29 ./usr/share/doc/mafft/copyright drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/share/doc/mafft/test/ -rw-r--r-- root/root 16616 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample -rw-r--r-- root/root 30112 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.dpparttree -rw-r--r-- root/root 28816 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.fftns2 -rw-r--r-- root/root 28996 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.fftnsi -rw-r--r-- root/root 29896 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.gins1 -rw-r--r-- root/root 29572 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.ginsi -rw-r--r-- root/root 41380 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.ginsi.allowshift -rw-r--r-- root/root 28888 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.lins1 -rw-r--r-- root/root 29500 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.linsi -rw-r--r-- root/root 30112 2021-10-30 03:43 ./usr/share/doc/mafft/test/sample.parttree -rw-r--r-- root/root 1502 2021-10-30 03:43 ./usr/share/doc/mafft/test/samplerna -rw-r--r-- root/root 1916 2021-10-30 03:43 ./usr/share/doc/mafft/test/samplerna.qinsi -rw-r--r-- root/root 1916 2021-10-30 03:43 ./usr/share/doc/mafft/test/samplerna.xinsi -rw-r--r-- root/root 908 2021-10-30 03:43 ./usr/share/doc/mafft/test/script drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/share/man/ drwxr-xr-x root/root 0 2021-11-02 13:30 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/ginsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/mafft-einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/mafft-fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/mafft-fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/mafft-ginsi.1.gz -> mafft.1.gz -rw-r--r-- root/root 2130 2021-11-02 13:30 ./usr/share/man/man1/mafft-homologs.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/mafft-linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2021-11-02 13:30 ./usr/share/man/man1/mafft-profile.1.gz -> mafft.1.gz -rw-r--r-- root/root 4421 2021-11-02 13:30 ./usr/share/man/man1/mafft.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: n/a Build-Time: 40 Distribution: jammy-proposed Host Architecture: s390x Install-Time: 7 Job: mafft_7.490-1.dsc Machine Architecture: s390x Package: mafft Package-Time: 47 Source-Version: 7.490-1 Space: n/a Status: successful Version: 7.490-1 -------------------------------------------------------------------------------- Finished at 2021-11-02T17:28:54Z Build needed 00:00:47, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=s390x PACKAGEBUILD-22364553 Scanning for processes to kill in build PACKAGEBUILD-22364553