RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux beebe 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Buildd toolchain package versions: launchpad-buildd_122~0.IS.8.04 python-lpbuildd_122~0.IS.8.04 dpkg-dev_1.17.5ubuntu5.2. Syncing the system clock with the buildd NTP service... 2 Jun 17:10:54 ntpdate[17367]: adjust time server 10.211.37.1 offset -0.032627 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6062448', '/home/buildd/filecache-default/068c484e8020d4b6c6e70f59341012b33345dbcd'] Unpacking chroot for build PACKAGEBUILD-6062448 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6062448'] Mounting chroot for build PACKAGEBUILD-6062448 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6062448', 'deb http://ftpmaster.internal/ubuntu utopic main universe', 'deb http://ftpmaster.internal/ubuntu utopic-security main universe', 'deb http://ftpmaster.internal/ubuntu utopic-updates main universe', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6062448 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6062448', 'arm64'] Updating debian chroot for build PACKAGEBUILD-6062448 Ign http://ftpmaster.internal utopic InRelease Ign http://archive-team.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://archive-team.internal utopic Release.gpg Ign http://ftpmaster.internal utopic-updates InRelease Get:1 http://archive-team.internal utopic Release [730 B] Ign http://ftpmaster.internal utopic-proposed InRelease Get:2 http://ftpmaster.internal utopic Release.gpg [933 B] Get:3 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:4 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal utopic Release [58.5 kB] Get:7 http://archive-team.internal utopic/main arm64 Packages Get:8 http://ftpmaster.internal utopic-security Release [58.5 kB] Ign http://archive-team.internal utopic/main Translation-en Get:9 http://ftpmaster.internal utopic-updates Release [58.5 kB] Get:10 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Get:11 http://ftpmaster.internal utopic/main arm64 Packages [1269 kB] Get:12 http://ftpmaster.internal utopic/universe arm64 Packages [5655 kB] Get:13 http://ftpmaster.internal utopic/main Translation-en [766 kB] Get:14 http://ftpmaster.internal utopic/universe Translation-en [4202 kB] Get:15 http://ftpmaster.internal utopic-security/main arm64 Packages [14 B] Get:16 http://ftpmaster.internal utopic-security/universe arm64 Packages [14 B] Get:17 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal utopic-updates/main arm64 Packages [14 B] Get:20 http://ftpmaster.internal utopic-updates/universe arm64 Packages [14 B] Get:21 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal utopic-proposed/main arm64 Packages [20.6 kB] Get:24 http://ftpmaster.internal utopic-proposed/universe arm64 Packages [145 kB] Get:25 http://ftpmaster.internal utopic-proposed/main Translation-en [18.4 kB] Get:26 http://ftpmaster.internal utopic-proposed/universe Translation-en [104 kB] Fetched 12.4 MB in 11s (1109 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: init-system-helpers libitm1 The following packages will be upgraded: bash bsdutils busybox-initramfs ca-certificates cpp cpp-4.8 e2fslibs e2fsprogs fakeroot g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gcc-4.9-base hostname ifupdown initramfs-tools initramfs-tools-bin initscripts kmod libatomic1 libblkid1 libcgmanager0 libcomerr2 libdbus-1-3 libdrm2 libfakeroot libffi6 libgcc-4.8-dev libgcc1 libgmp10 libgnutls26 libgnutls28 libgomp1 libkmod2 libmount1 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth2 libprocps3 libselinux1 libsemanage-common libsemanage1 libsepol1 libss2 libssl1.0.0 libstdc++-4.8-dev libstdc++6 libtasn1-6 libudev1 libuuid1 linux-libc-dev login lsb-base make module-init-tools mount mountall openssl passwd plymouth procps sysv-rc sysvinit-utils tzdata udev upstart util-linux 73 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 23.6 MB of archives. After this operation, 2014 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main bash arm64 4.3-7ubuntu3 [510 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main e2fslibs arm64 1.42.10-1ubuntu1 [164 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main e2fsprogs arm64 1.42.10-1ubuntu1 [654 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libselinux1 arm64 2.3-1 [48.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main init-system-helpers all 1.18 [12.6 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main plymouth arm64 0.8.8-0ubuntu18 [85.3 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libplymouth2 arm64 0.8.8-0ubuntu18 [62.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools-bin arm64 0.103ubuntu6 [8914 B] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools all 0.103ubuntu6 [44.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main mountall arm64 2.54 [49.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main upstart arm64 1.12.1-0ubuntu8 [325 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main lsb-base all 4.1+Debian11ubuntu8 [13.1 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main initscripts arm64 2.88dsf-41ubuntu16 [35.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main sysv-rc all 2.88dsf-41ubuntu16 [37.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main sysvinit-utils arm64 2.88dsf-41ubuntu16 [48.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libdbus-1-3 arm64 1.6.18-0ubuntu7 [107 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main libnih-dbus1 arm64 1.0.3-4ubuntu26 [12.3 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main libnih1 arm64 1.0.3-4ubuntu26 [40.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main libpam0g arm64 1.1.8-3ubuntu1 [52.8 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage-common all 2.3-1 [6278 B] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage1 arm64 2.3-1 [55.9 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main libsepol1 arm64 2.3-1 [83.1 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules-bin arm64 1.1.8-3ubuntu1 [28.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules arm64 1.1.8-3ubuntu1 [214 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main passwd arm64 1:4.1.5.1-1.1ubuntu1 [724 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libuuid1 arm64 2.20.1-5.1ubuntu21 [10.1 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libblkid1 arm64 2.20.1-5.1ubuntu21 [51.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main libcgmanager0 arm64 0.26-0ubuntu3 [22.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 arm64 16-2ubuntu4 [30.4 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main tzdata all 2014d-1 [190 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main util-linux arm64 2.20.1-5.1ubuntu21 [428 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libprocps3 arm64 1:3.3.9-1ubuntu3 [27.3 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/main procps arm64 1:3.3.9-1ubuntu3 [198 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main udev arm64 204-10ubuntu8 [714 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main libudev1 arm64 204-10ubuntu8 [31.7 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main busybox-initramfs arm64 1:1.22.0-6ubuntu1 [161 kB] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main kmod arm64 16-2ubuntu4 [74.3 kB] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 16-2ubuntu4 [2084 B] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main libdrm2 arm64 2.4.54-1 [19.6 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main ifupdown arm64 0.7.48.1ubuntu4 [48.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main mount arm64 2.20.1-5.1ubuntu21 [109 kB] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main hostname arm64 3.15ubuntu2 [11.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ utopic/main login arm64 1:4.1.5.1-1.1ubuntu1 [298 kB] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main bsdutils arm64 1:2.20.1-5.1ubuntu21 [33.2 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main libgomp1 arm64 4.9.0-5ubuntu2 [31.4 kB] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.9-base arm64 4.9.0-5ubuntu2 [15.5 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++6 arm64 4.9.0-5ubuntu2 [258 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main libatomic1 arm64 4.9.0-5ubuntu2 [6756 B] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main libgcc1 arm64 1:4.9.0-5ubuntu2 [32.5 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main libcomerr2 arm64 1.42.10-1ubuntu1 [62.8 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main libmount1 arm64 2.20.1-5.1ubuntu21 [47.2 kB] Get:52 http://ftpmaster.internal/ubuntu/ utopic/main libss2 arm64 1.42.10-1ubuntu1 [66.2 kB] Get:53 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libffi6 arm64 3.1-1 [16.3 kB] Get:54 http://ftpmaster.internal/ubuntu/ utopic/main libgmp10 arm64 2:6.0.0+dfsg-4 [196 kB] Get:55 http://ftpmaster.internal/ubuntu/ utopic/main libtasn1-6 arm64 3.6-1 [37.9 kB] Get:56 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls28 arm64 3.2.15-1 [373 kB] Get:57 http://ftpmaster.internal/ubuntu/ utopic/main libssl1.0.0 arm64 1.0.1f-1ubuntu3 [660 kB] Get:58 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls26 arm64 2.12.23-15ubuntu2 [327 kB] Get:59 http://ftpmaster.internal/ubuntu/ utopic/main libitm1 arm64 4.9.0-5ubuntu2 [26.2 kB] Get:60 http://ftpmaster.internal/ubuntu/ utopic/main libpam-runtime all 1.1.8-3ubuntu1 [39.7 kB] Get:61 http://ftpmaster.internal/ubuntu/ utopic/main openssl arm64 1.0.1f-1ubuntu3 [475 kB] Get:62 http://ftpmaster.internal/ubuntu/ utopic/main ca-certificates all 20140325 [184 kB] Get:63 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 arm64 4.8.3-2ubuntu1 [5241 kB] Get:64 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev arm64 4.8.3-2ubuntu1 [1056 kB] Get:65 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev arm64 4.8.3-2ubuntu1 [161 kB] Get:66 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 arm64 4.8.3-2ubuntu1 [3945 kB] Get:67 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 arm64 4.8.3-2ubuntu1 [3485 kB] Get:68 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base arm64 4.8.3-2ubuntu1 [15.2 kB] Get:69 http://ftpmaster.internal/ubuntu/ utopic/main cpp arm64 4:4.8.2-4ubuntu1 [27.6 kB] Get:70 http://ftpmaster.internal/ubuntu/ utopic/main libfakeroot arm64 1.20-3ubuntu3 [21.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ utopic/main fakeroot arm64 1.20-3ubuntu3 [53.3 kB] Get:72 http://ftpmaster.internal/ubuntu/ utopic/main gcc arm64 4:4.8.2-4ubuntu1 [5222 B] Get:73 http://ftpmaster.internal/ubuntu/ utopic/main g++ arm64 4:4.8.2-4ubuntu1 [1602 B] Get:74 http://ftpmaster.internal/ubuntu/ utopic/main linux-libc-dev arm64 3.15.0-4.9 [733 kB] Get:75 http://ftpmaster.internal/ubuntu/ utopic/main make arm64 4.0-7 [135 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.6 MB in 19s (1189 kB/s) (Reading database ... 11758 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu3_arm64.deb ... Unpacking bash (4.3-7ubuntu3) over (4.3-7ubuntu1) ... Setting up bash (4.3-7ubuntu3) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11758 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.10-1ubuntu1_arm64.deb ... Unpacking e2fslibs:arm64 (1.42.10-1ubuntu1) over (1.42.9-3ubuntu1) ... Setting up e2fslibs:arm64 (1.42.10-1ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11758 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.10-1ubuntu1_arm64.deb ... Unpacking e2fsprogs (1.42.10-1ubuntu1) over (1.42.9-3ubuntu1) ... Setting up e2fsprogs (1.42.10-1ubuntu1) ... (Reading database ... 11758 files and directories currently installed.) Preparing to unpack .../libselinux1_2.3-1_arm64.deb ... Unpacking libselinux1:arm64 (2.3-1) over (2.2.2-1ubuntu1) ... Setting up libselinux1:arm64 (2.3-1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Selecting previously unselected package init-system-helpers. (Reading database ... 11758 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.18_all.deb ... Unpacking init-system-helpers (1.18) ... Preparing to unpack .../plymouth_0.8.8-0ubuntu18_arm64.deb ... Unpacking plymouth (0.8.8-0ubuntu18) over (0.8.8-0ubuntu17) ... Preparing to unpack .../libplymouth2_0.8.8-0ubuntu18_arm64.deb ... Unpacking libplymouth2:arm64 (0.8.8-0ubuntu18) over (0.8.8-0ubuntu17) ... Preparing to unpack .../initramfs-tools-bin_0.103ubuntu6_arm64.deb ... Unpacking initramfs-tools-bin (0.103ubuntu6) over (0.103ubuntu4) ... Preparing to unpack .../initramfs-tools_0.103ubuntu6_all.deb ... Unpacking initramfs-tools (0.103ubuntu6) over (0.103ubuntu4) ... Preparing to unpack .../mountall_2.54_arm64.deb ... Unpacking mountall (2.54) over (2.53) ... Preparing to unpack .../upstart_1.12.1-0ubuntu8_arm64.deb ... Unpacking upstart (1.12.1-0ubuntu8) over (1.12.1-0ubuntu4) ... Preparing to unpack .../lsb-base_4.1+Debian11ubuntu8_all.deb ... Unpacking lsb-base (4.1+Debian11ubuntu8) over (4.1+Debian11ubuntu6) ... Setting up lsb-base (4.1+Debian11ubuntu8) ... (Reading database ... 11796 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-41ubuntu16_arm64.deb ... Unpacking initscripts (2.88dsf-41ubuntu16) over (2.88dsf-41ubuntu6) ... Preparing to unpack .../sysv-rc_2.88dsf-41ubuntu16_all.deb ... Unpacking sysv-rc (2.88dsf-41ubuntu16) over (2.88dsf-41ubuntu6) ... Preparing to unpack .../sysvinit-utils_2.88dsf-41ubuntu16_arm64.deb ... Unpacking sysvinit-utils (2.88dsf-41ubuntu16) over (2.88dsf-41ubuntu6) ... Setting up sysvinit-utils (2.88dsf-41ubuntu16) ... Setting up sysv-rc (2.88dsf-41ubuntu16) ... info: Reordering boot system, log to /var/lib/insserv/run-20140602T1711.log success: Enabled dependency based boot system. (Reading database ... 11807 files and directories currently installed.) Preparing to unpack .../libdbus-1-3_1.6.18-0ubuntu7_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.6.18-0ubuntu7) over (1.6.18-0ubuntu4) ... Preparing to unpack .../libnih-dbus1_1.0.3-4ubuntu26_arm64.deb ... Unpacking libnih-dbus1:arm64 (1.0.3-4ubuntu26) over (1.0.3-4ubuntu25) ... Preparing to unpack .../libnih1_1.0.3-4ubuntu26_arm64.deb ... Unpacking libnih1:arm64 (1.0.3-4ubuntu26) over (1.0.3-4ubuntu25) ... Preparing to unpack .../libpam0g_1.1.8-3ubuntu1_arm64.deb ... Unpacking libpam0g:arm64 (1.1.8-3ubuntu1) over (1.1.8-1ubuntu2) ... Setting up libpam0g:arm64 (1.1.8-3ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11807 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.3-1_all.deb ... Unpacking libsemanage-common (2.3-1) over (2.2-1ubuntu1) ... Setting up libsemanage-common (2.3-1) ... (Reading database ... 11807 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.3-1_arm64.deb ... Unpacking libsemanage1:arm64 (2.3-1) over (2.2-1ubuntu1) ... Preparing to unpack .../libsepol1_2.3-1_arm64.deb ... Unpacking libsepol1:arm64 (2.3-1) over (2.2-1) ... Setting up libsepol1:arm64 (2.3-1) ... Setting up libsemanage1:arm64 (2.3-1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11807 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3ubuntu1_arm64.deb ... Unpacking libpam-modules-bin (1.1.8-3ubuntu1) over (1.1.8-1ubuntu2) ... Setting up libpam-modules-bin (1.1.8-3ubuntu1) ... (Reading database ... 11807 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-3ubuntu1_arm64.deb ... Unpacking libpam-modules:arm64 (1.1.8-3ubuntu1) over (1.1.8-1ubuntu2) ... Setting up libpam-modules:arm64 (1.1.8-3ubuntu1) ... (Reading database ... 11808 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.1.5.1-1.1ubuntu1_arm64.deb ... Unpacking passwd (1:4.1.5.1-1.1ubuntu1) over (1:4.1.5.1-1ubuntu9) ... Setting up passwd (1:4.1.5.1-1.1ubuntu1) ... (Reading database ... 11808 files and directories currently installed.) Preparing to unpack .../libuuid1_2.20.1-5.1ubuntu21_arm64.deb ... Unpacking libuuid1:arm64 (2.20.1-5.1ubuntu21) over (2.20.1-5.1ubuntu20) ... Setting up libuuid1:arm64 (2.20.1-5.1ubuntu21) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11808 files and directories currently installed.) Preparing to unpack .../libblkid1_2.20.1-5.1ubuntu21_arm64.deb ... Unpacking libblkid1:arm64 (2.20.1-5.1ubuntu21) over (2.20.1-5.1ubuntu20) ... Setting up libblkid1:arm64 (2.20.1-5.1ubuntu21) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11808 files and directories currently installed.) Preparing to unpack .../libcgmanager0_0.26-0ubuntu3_arm64.deb ... Unpacking libcgmanager0:arm64 (0.26-0ubuntu3) over (0.25-0ubuntu4) ... Preparing to unpack .../libkmod2_16-2ubuntu4_arm64.deb ... Unpacking libkmod2:arm64 (16-2ubuntu4) over (16-2ubuntu3) ... Preparing to unpack .../tzdata_2014d-1_all.deb ... Unpacking tzdata (2014d-1) over (2014b-1) ... Setting up tzdata (2014d-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jun 2 17:12:13 UTC 2014. Universal Time is now: Mon Jun 2 17:12:13 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11808 files and directories currently installed.) Preparing to unpack .../util-linux_2.20.1-5.1ubuntu21_arm64.deb ... Unpacking util-linux (2.20.1-5.1ubuntu21) over (2.20.1-5.1ubuntu20) ... Setting up util-linux (2.20.1-5.1ubuntu21) ... (Reading database ... 11808 files and directories currently installed.) Preparing to unpack .../libprocps3_1%3a3.3.9-1ubuntu3_arm64.deb ... Unpacking libprocps3:arm64 (1:3.3.9-1ubuntu3) over (1:3.3.9-1ubuntu2) ... Preparing to unpack .../procps_1%3a3.3.9-1ubuntu3_arm64.deb ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (1:3.3.9-1ubuntu3) over (1:3.3.9-1ubuntu2) ... Preparing to unpack .../udev_204-10ubuntu8_arm64.deb ... Unpacking udev (204-10ubuntu8) over (204-10ubuntu1) ... Preparing to unpack .../libudev1_204-10ubuntu8_arm64.deb ... Unpacking libudev1:arm64 (204-10ubuntu8) over (204-10ubuntu1) ... Preparing to unpack .../busybox-initramfs_1%3a1.22.0-6ubuntu1_arm64.deb ... Unpacking busybox-initramfs (1:1.22.0-6ubuntu1) over (1:1.22.0-5ubuntu1) ... Preparing to unpack .../kmod_16-2ubuntu4_arm64.deb ... Unpacking kmod (16-2ubuntu4) over (16-2ubuntu3) ... Preparing to unpack .../module-init-tools_16-2ubuntu4_all.deb ... Unpacking module-init-tools (16-2ubuntu4) over (16-2ubuntu3) ... Preparing to unpack .../libdrm2_2.4.54-1_arm64.deb ... Unpacking libdrm2:arm64 (2.4.54-1) over (2.4.53-1) ... Preparing to unpack .../ifupdown_0.7.48.1ubuntu4_arm64.deb ... Unpacking ifupdown (0.7.48.1ubuntu4) over (0.7.48.1ubuntu1) ... Preparing to unpack .../mount_2.20.1-5.1ubuntu21_arm64.deb ... Unpacking mount (2.20.1-5.1ubuntu21) over (2.20.1-5.1ubuntu20) ... Setting up mount (2.20.1-5.1ubuntu21) ... (Reading database ... 11809 files and directories currently installed.) Preparing to unpack .../hostname_3.15ubuntu2_arm64.deb ... Unpacking hostname (3.15ubuntu2) over (3.15ubuntu1) ... Setting up hostname (3.15ubuntu2) ... (Reading database ... 11810 files and directories currently installed.) Preparing to unpack .../login_1%3a4.1.5.1-1.1ubuntu1_arm64.deb ... Unpacking login (1:4.1.5.1-1.1ubuntu1) over (1:4.1.5.1-1ubuntu9) ... Setting up login (1:4.1.5.1-1.1ubuntu1) ... (Reading database ... 11810 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.20.1-5.1ubuntu21_arm64.deb ... Unpacking bsdutils (1:2.20.1-5.1ubuntu21) over (1:2.20.1-5.1ubuntu20) ... Setting up bsdutils (1:2.20.1-5.1ubuntu21) ... (Reading database ... 11810 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.0-5ubuntu2_arm64.deb ... Unpacking libgomp1:arm64 (4.9.0-5ubuntu2) over (4.9.0-1ubuntu3) ... Preparing to unpack .../gcc-4.9-base_4.9.0-5ubuntu2_arm64.deb ... Unpacking gcc-4.9-base:arm64 (4.9.0-5ubuntu2) over (4.9.0-1ubuntu3) ... Setting up gcc-4.9-base:arm64 (4.9.0-5ubuntu2) ... (Reading database ... 11810 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.0-5ubuntu2_arm64.deb ... Unpacking libstdc++6:arm64 (4.9.0-5ubuntu2) over (4.9.0-1ubuntu3) ... Preparing to unpack .../libgcc1_1%3a4.9.0-5ubuntu2_arm64.deb ... Unpacking libgcc1:arm64 (1:4.9.0-5ubuntu2) over (1:4.9.0-1ubuntu3) ... Setting up libgcc1:arm64 (1:4.9.0-5ubuntu2) ... Setting up libstdc++6:arm64 (4.9.0-5ubuntu2) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11823 files and directories currently installed.) Preparing to unpack .../libatomic1_4.9.0-5ubuntu2_arm64.deb ... Unpacking libatomic1:arm64 (4.9.0-5ubuntu2) over (4.9.0-1ubuntu3) ... Preparing to unpack .../libcomerr2_1.42.10-1ubuntu1_arm64.deb ... Unpacking libcomerr2:arm64 (1.42.10-1ubuntu1) over (1.42.9-3ubuntu1) ... Setting up libcomerr2:arm64 (1.42.10-1ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11823 files and directories currently installed.) Preparing to unpack .../libmount1_2.20.1-5.1ubuntu21_arm64.deb ... Unpacking libmount1:arm64 (2.20.1-5.1ubuntu21) over (2.20.1-5.1ubuntu20) ... Setting up libmount1:arm64 (2.20.1-5.1ubuntu21) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11823 files and directories currently installed.) Preparing to unpack .../libss2_1.42.10-1ubuntu1_arm64.deb ... Unpacking libss2:arm64 (1.42.10-1ubuntu1) over (1.42.9-3ubuntu1) ... Setting up libss2:arm64 (1.42.10-1ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11823 files and directories currently installed.) Preparing to unpack .../libffi6_3.1-1_arm64.deb ... Unpacking libffi6:arm64 (3.1-1) over (3.1~rc1+r3.0.13-12) ... Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-4_arm64.deb ... Unpacking libgmp10:arm64 (2:6.0.0+dfsg-4) over (2:6.0.0+dfsg-3) ... Preparing to unpack .../libtasn1-6_3.6-1_arm64.deb ... Unpacking libtasn1-6:arm64 (3.6-1) over (3.4-3) ... Preparing to unpack .../libgnutls28_3.2.15-1_arm64.deb ... Unpacking libgnutls28:arm64 (3.2.15-1) over (3.2.11-2ubuntu1) ... Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu3_arm64.deb ... Unpacking libssl1.0.0:arm64 (1.0.1f-1ubuntu3) over (1.0.1f-1ubuntu2) ... Preparing to unpack .../libgnutls26_2.12.23-15ubuntu2_arm64.deb ... Unpacking libgnutls26:arm64 (2.12.23-15ubuntu2) over (2.12.23-12ubuntu2) ... Selecting previously unselected package libitm1:arm64. Preparing to unpack .../libitm1_4.9.0-5ubuntu2_arm64.deb ... Unpacking libitm1:arm64 (4.9.0-5ubuntu2) ... Preparing to unpack .../libpam-runtime_1.1.8-3ubuntu1_all.deb ... Unpacking libpam-runtime (1.1.8-3ubuntu1) over (1.1.8-1ubuntu2) ... Setting up libpam-runtime (1.1.8-3ubuntu1) ... (Reading database ... 11805 files and directories currently installed.) Preparing to unpack .../openssl_1.0.1f-1ubuntu3_arm64.deb ... Unpacking openssl (1.0.1f-1ubuntu3) over (1.0.1f-1ubuntu2) ... Preparing to unpack .../ca-certificates_20140325_all.deb ... Unpacking ca-certificates (20140325) over (20130906ubuntu2) ... Preparing to unpack .../g++-4.8_4.8.3-2ubuntu1_arm64.deb ... Unpacking g++-4.8 (4.8.3-2ubuntu1) over (4.8.2-21ubuntu1) ... Preparing to unpack .../libstdc++-4.8-dev_4.8.3-2ubuntu1_arm64.deb ... Unpacking libstdc++-4.8-dev:arm64 (4.8.3-2ubuntu1) over (4.8.2-21ubuntu1) ... Preparing to unpack .../libgcc-4.8-dev_4.8.3-2ubuntu1_arm64.deb ... Unpacking libgcc-4.8-dev:arm64 (4.8.3-2ubuntu1) over (4.8.2-21ubuntu1) ... Preparing to unpack .../gcc-4.8_4.8.3-2ubuntu1_arm64.deb ... Unpacking gcc-4.8 (4.8.3-2ubuntu1) over (4.8.2-21ubuntu1) ... Preparing to unpack .../cpp-4.8_4.8.3-2ubuntu1_arm64.deb ... Unpacking cpp-4.8 (4.8.3-2ubuntu1) over (4.8.2-21ubuntu1) ... Preparing to unpack .../gcc-4.8-base_4.8.3-2ubuntu1_arm64.deb ... Unpacking gcc-4.8-base:arm64 (4.8.3-2ubuntu1) over (4.8.2-21ubuntu1) ... Preparing to unpack .../cpp_4%3a4.8.2-4ubuntu1_arm64.deb ... Unpacking cpp (4:4.8.2-4ubuntu1) over (4:4.8.2-1ubuntu6) ... Preparing to unpack .../libfakeroot_1.20-3ubuntu3_arm64.deb ... Unpacking libfakeroot:arm64 (1.20-3ubuntu3) over (1.20-3ubuntu2) ... Preparing to unpack .../fakeroot_1.20-3ubuntu3_arm64.deb ... Unpacking fakeroot (1.20-3ubuntu3) over (1.20-3ubuntu2) ... Preparing to unpack .../gcc_4%3a4.8.2-4ubuntu1_arm64.deb ... Removing old gcc doc directory. Unpacking gcc (4:4.8.2-4ubuntu1) over (4:4.8.2-1ubuntu6) ... Preparing to unpack .../g++_4%3a4.8.2-4ubuntu1_arm64.deb ... Unpacking g++ (4:4.8.2-4ubuntu1) over (4:4.8.2-1ubuntu6) ... Preparing to unpack .../linux-libc-dev_3.15.0-4.9_arm64.deb ... Unpacking linux-libc-dev:arm64 (3.15.0-4.9) over (3.13.0-24.46) ... Preparing to unpack .../archives/make_4.0-7_arm64.deb ... Unpacking make (4.0-7) over (3.81-8.2ubuntu3) ... Setting up init-system-helpers (1.18) ... Setting up libdbus-1-3:arm64 (1.6.18-0ubuntu7) ... Setting up libcgmanager0:arm64 (0.26-0ubuntu3) ... Setting up libnih1:arm64 (1.0.3-4ubuntu26) ... Setting up libnih-dbus1:arm64 (1.0.3-4ubuntu26) ... Setting up libudev1:arm64 (204-10ubuntu8) ... Setting up initramfs-tools-bin (0.103ubuntu6) ... Setting up busybox-initramfs (1:1.22.0-6ubuntu1) ... Setting up libkmod2:arm64 (16-2ubuntu4) ... Setting up kmod (16-2ubuntu4) ... Setting up module-init-tools (16-2ubuntu4) ... Setting up libprocps3:arm64 (1:3.3.9-1ubuntu3) ... Setting up libplymouth2:arm64 (0.8.8-0ubuntu18) ... Setting up libdrm2:arm64 (2.4.54-1) ... Setting up libgomp1:arm64 (4.9.0-5ubuntu2) ... Setting up libatomic1:arm64 (4.9.0-5ubuntu2) ... Setting up libffi6:arm64 (3.1-1) ... Setting up libgmp10:arm64 (2:6.0.0+dfsg-4) ... Setting up libtasn1-6:arm64 (3.6-1) ... Setting up libgnutls28:arm64 (3.2.15-1) ... Setting up libssl1.0.0:arm64 (1.0.1f-1ubuntu3) ... Setting up libgnutls26:arm64 (2.12.23-15ubuntu2) ... Setting up libitm1:arm64 (4.9.0-5ubuntu2) ... Setting up openssl (1.0.1f-1ubuntu3) ... Setting up ca-certificates (20140325) ... Setting up gcc-4.8-base:arm64 (4.8.3-2ubuntu1) ... Setting up cpp-4.8 (4.8.3-2ubuntu1) ... Setting up libgcc-4.8-dev:arm64 (4.8.3-2ubuntu1) ... Setting up gcc-4.8 (4.8.3-2ubuntu1) ... Setting up libstdc++-4.8-dev:arm64 (4.8.3-2ubuntu1) ... Setting up g++-4.8 (4.8.3-2ubuntu1) ... Setting up cpp (4:4.8.2-4ubuntu1) ... Setting up libfakeroot:arm64 (1.20-3ubuntu3) ... Setting up fakeroot (1.20-3ubuntu3) ... Setting up gcc (4:4.8.2-4ubuntu1) ... Setting up g++ (4:4.8.2-4ubuntu1) ... Setting up linux-libc-dev:arm64 (3.15.0-4.9) ... Setting up make (4.0-7) ... Setting up mountall (2.54) ... Installing new version of config file /etc/init/mounted-proc.conf ... Setting up initscripts (2.88dsf-41ubuntu16) ... Installing new version of config file /etc/init.d/ondemand ... Setting up procps (1:3.3.9-1ubuntu3) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (204-10ubuntu8) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udev-finish.conf ... invoke-rc.d: policy-rc.d denied execution of restart. update-initramfs: deferring update (trigger activated) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev-finish Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev-finish Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match lvm2 Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match lvm2 Default-Stop values (none) Setting up initramfs-tools (0.103ubuntu6) ... update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.48.1ubuntu4) ... Installing new version of config file /etc/init/network-interface.conf ... update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match networking Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match networking Default-Stop values (0 6) Setting up upstart (1.12.1-0ubuntu8) ... Installing new version of config file /etc/upstart-xsessions ... Installing new version of config file /etc/cron.daily/upstart ... Setting up plymouth (0.8.8-0ubuntu18) ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin (2.19-0ubuntu6) ... Processing triggers for ca-certificates (20140325) ... Updating certificates in /etc/ssl/certs... 7 added, 3 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for initramfs-tools (0.103ubuntu6) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6062448', 'arm64', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'mapsembler2_2.1.6+dfsg-1.dsc'] Initiating build PACKAGEBUILD-6062448 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Automatic build of mapsembler2_2.1.6+dfsg-1 on beebe by sbuild/arm64 1.170.5 Build started at 20140602-1713 ****************************************************************************** mapsembler2_2.1.6+dfsg-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), bc, zlib1g-dev, help2man Checking for already installed source dependencies... debhelper: missing bc: missing zlib1g-dev: missing help2man: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper bc zlib1g-dev help2man Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 liblocale-gettext-perl libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bc bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base help2man intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 liblocale-gettext-perl libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. Need to get 5981 kB of archives. After this operation, 22.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main liblocale-gettext-perl arm64 1.05-8 [17.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 arm64 1:5.18-1ubuntu1 [190 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 arm64 0.18.3.2-1ubuntu1 [6354 B] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 arm64 2.41.0-1 [878 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 arm64 1.3.0-1 [20.8 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 arm64 2.9.1+dfsg1-3ubuntu5 [462 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main groff-base arm64 1.22.2-5 [1044 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main man-db arm64 2.6.7.1-1 [827 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 arm64 0.6.8-2ubuntu1 [65.1 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 arm64 0.9.3-5ubuntu3 [255 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main file arm64 1:5.18-1ubuntu1 [20.0 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base arm64 0.18.3.2-1ubuntu1 [45.8 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main bc arm64 1.06.95-8ubuntu1 [77.0 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main gettext arm64 0.18.3.2-1ubuntu1 [774 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.95~2430-0ubuntu5 [11.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20140228ubuntu6 [606 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main help2man arm64 1.45.1 [60.2 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main zlib1g-dev arm64 1:1.2.8.dfsg-1ubuntu1 [179 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5981 kB in 5s (1024 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11834 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.05-8_arm64.deb ... Unpacking liblocale-gettext-perl (1.05-8) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../libmagic1_1%3a5.18-1ubuntu1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.18-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:arm64. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_arm64.deb ... Unpacking libasprintf0c2:arm64 (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../libglib2.0-0_2.41.0-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.41.0-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../libpipeline1_1.3.0-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.3.0-1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu5_arm64.deb ... Unpacking libxml2:arm64 (2.9.1+dfsg1-3ubuntu5) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-5_arm64.deb ... Unpacking groff-base (1.22.2-5) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_arm64.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.7.1-1_arm64.deb ... Unpacking man-db (2.6.7.1-1) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../libcroco3_0.6.8-2ubuntu1_arm64.deb ... Unpacking libcroco3:arm64 (0.6.8-2ubuntu1) ... Selecting previously unselected package libunistring0:arm64. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_arm64.deb ... Unpacking libunistring0:arm64 (0.9.3-5ubuntu3) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.18-1ubuntu1_arm64.deb ... Unpacking file (1:5.18-1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.2-1ubuntu1_arm64.deb ... Unpacking gettext-base (0.18.3.2-1ubuntu1) ... Selecting previously unselected package bc. Preparing to unpack .../bc_1.06.95-8ubuntu1_arm64.deb ... Unpacking bc (1.06.95-8ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.18.3.2-1ubuntu1_arm64.deb ... Unpacking gettext (0.18.3.2-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu2ubuntu1_all.deb ... Unpacking po-debconf (1.0.16+nmu2ubuntu1) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.95~2430-0ubuntu5_all.deb ... Unpacking dh-apparmor (2.8.95~2430-0ubuntu5) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20140228ubuntu6_all.deb ... Unpacking debhelper (9.20140228ubuntu6) ... Selecting previously unselected package help2man. Preparing to unpack .../help2man_1.45.1_arm64.deb ... Unpacking help2man (1.45.1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up liblocale-gettext-perl (1.05-8) ... Setting up libmagic1:arm64 (1:5.18-1ubuntu1) ... Setting up libasprintf0c2:arm64 (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:arm64 (2.41.0-1) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.3.0-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-3ubuntu5) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:arm64 (0.6.8-2ubuntu1) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu3) ... Setting up file (1:5.18-1ubuntu1) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up bc (1.06.95-8ubuntu1) ... Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.95~2430-0ubuntu5) ... Setting up debhelper (9.20140228ubuntu6) ... Setting up help2man (1.45.1) ... Setting up zlib1g-dev:arm64 (1:1.2.8.dfsg-1ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-0ubuntu6 make_4.0-7 dpkg-dev_1.17.9ubuntu1 gcc-4.8_4.8.3-2ubuntu1 g++-4.8_4.8.3-2ubuntu1 binutils_2.24.51.20140425-0ubuntu2 libstdc++-4.8-dev_4.8.3-2ubuntu1 libstdc++6_4.9.0-5ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Mon Jun 2 12:29:10 2014 UTC using RSA key ID 326D8438 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mapsembler2_2.1.6+dfsg-1.dsc dpkg-source: info: extracting mapsembler2 in mapsembler2-2.1.6+dfsg dpkg-source: info: unpacking mapsembler2_2.1.6+dfsg.orig.tar.gz dpkg-source: info: unpacking mapsembler2_2.1.6+dfsg-1.debian.tar.xz dpkg-source: info: applying fix_makefile dpkg-buildpackage: source package mapsembler2 dpkg-buildpackage: source version 2.1.6+dfsg-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build mapsembler2-2.1.6+dfsg dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/build/buildd/mapsembler2-2.1.6+dfsg' cd maps && make clean make[2]: Entering directory '/build/buildd/mapsembler2-2.1.6+dfsg/maps' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/buildd/mapsembler2-2.1.6+dfsg/maps' rm -f maps/mapsembler rm -f mapsembler.1 dh_clean make[1]: Leaving directory '/build/buildd/mapsembler2-2.1.6+dfsg' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/buildd/mapsembler2-2.1.6+dfsg' dh_auto_build cd maps && make make[2]: Entering directory '/build/buildd/mapsembler2-2.1.6+dfsg/maps' g++ -lz -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 ../minia/Bank.cpp: In member function 'void Bank::init(char**, int)': ../minia/Bank.cpp:279:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^ ../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)': ../minia/Bank.cpp:710:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^ ../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)': ../minia/Bank.cpp:795:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^ ../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()': ../minia/Bank.cpp:985:65: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer ^ g++ -lz -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 ../minia/Bloom.cpp: In member function 'void Bloom::load(char*)': ../minia/Bloom.cpp:256:62: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t {aka long unsigned int}' [-Wformat=] printf("loading bloom filter from file, nelem %lli \n",nchar); ^ ../minia/Bloom.cpp:257:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(blooma, sizeof(unsigned char), nchar, file_data); ^ g++ -lz -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)': ../minia/Terminator.cpp:275:182: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); ^ ../minia/Terminator.cpp:303:150: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); ^ ../minia/Terminator.cpp:303:150: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t {aka long unsigned int}' [-Wformat=] ../minia/Terminator.cpp:311:151: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"\n\nAllocated memory for marking: %lld branching kmers x (%lu+%lu) B \n",nb_branching_kmers,sizeof(kmer_type),sizeof(set_value_t)); ^ ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)': ../minia/Terminator.cpp:337:186: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); ^ g++ -lz -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 ../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)': ../minia/Set.cpp:288:82: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); ^ g++ -lz -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 ../minia/Utils.cpp: In function 'uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)': ../minia/Utils.cpp:434:112: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); ^ ../minia/Utils.cpp: In instantiation of 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:167:85: required from here ../minia/Utils.cpp:121:99: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t {aka long unsigned int}' [-Wformat=] printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); ^ ../minia/Utils.cpp:121:99: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:187:42: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_kmercpt_write), 0); //erase previous file ^ ../minia/Utils.cpp:199:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); ^ ../minia/Utils.cpp:225:45: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_kmercpt_read), 0); //erase previous file ^ g++ -lz -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 ../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)': ../minia/SortingCount.cpp:56:50: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd(current_path,sizeof(current_path)); ^ ../minia/SortingCount.cpp:282:52: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ^ ../minia/SortingCount.cpp:536:56: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ^ g++ -lz -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 ../minia/Debloom.cpp: In function 'int debloom(int, int)': ../minia/Debloom.cpp:154:106: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t {aka long unsigned int}' [-Wformat=] if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); ^ ../minia/Debloom.cpp:158:47: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf(stderr,"\n%lli kmers written\n",cc); ^ ../minia/Debloom.cpp:191:93: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t {aka long unsigned int}' [-Wformat=] if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); ^ ../minia/Debloom.cpp:195:104: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); ^ ../minia/Debloom.cpp:195:104: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t {aka long unsigned int}' [-Wformat=] ../minia/Debloom.cpp:208:104: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); ^ ../minia/Debloom.cpp:215:77: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf(stderr,"Nb kmers stored in the bloom table %lld\n",nbkmers_solid); ^ ../minia/Debloom.cpp:225:104: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); ^ ../minia/Debloom.cpp: In function 'Set* load_false_positives()': ../minia/Debloom.cpp:280:133: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); ^ ../minia/Debloom.cpp:284:102: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); ^ ../minia/Debloom.cpp: In function 'Set* load_false_positives_cascading4()': ../minia/Debloom.cpp:335:75: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"%cInsert false positive B2 %lld",13,NbInsertedKmers); ^ ../minia/Debloom.cpp:337:72: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"%cInsert false positive B2 %lld", 13,NbInsertedKmers); ^ ../minia/Debloom.cpp:340:83: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'int64_t {aka long int}' [-Wformat=] printf("\nInserted %lld (estimated, %lld) kmers in B2.\n", NbInsertedKmers, nbFP); ^ ../minia/Debloom.cpp:340:83: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] ../minia/Debloom.cpp:364:82: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,(char*)"%cInsert false positive B3 %lld",13,NbInsertedKmers); ^ ../minia/Debloom.cpp:366:78: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,(char*)"%cInsert false positive B3 %lld",13,NbInsertedKmers); ^ ../minia/Debloom.cpp:369:87: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] printf("\nInserted %d (estimated, %llu) kmers in B3.\n", addKmers, estimated_T2_size); ^ ../minia/Debloom.cpp:388:75: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"%cInsert false positive B4 %lld",13,NbInsertedKmers); ^ ../minia/Debloom.cpp:390:72: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"%cInsert false positive B4 %lld", 13,NbInsertedKmers); ^ ../minia/Debloom.cpp:393:87: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] printf("\nInserted %d (estimated, %lld) kmers in B4.\n", addKmers, estimated_T3_size); ^ ../minia/Debloom.cpp:417:75: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"%cInsert false positive T4 %lld",13,NbInsertedKmers); ^ ../minia/Debloom.cpp:420:72: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t {aka long int}' [-Wformat=] fprintf (stderr,"%cInsert false positive T4 %lld", 13,NbInsertedKmers); ^ ../minia/Debloom.cpp:423:113: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] printf("\nInserted %d (estimated, %lld) kmers in T4.\n\n", addKmers, (uint64_t)fp->false_positives->capacity()); ^ ../minia/Debloom.cpp: In function 'void print_size_summary(FPSet*)': ../minia/Debloom.cpp:445:144: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); ^ ../minia/Debloom.cpp:448:156: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); ^ ../minia/Debloom.cpp: In function 'void print_size_summary(FPSetCascading4*)': ../minia/Debloom.cpp:465:156: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t {aka long unsigned int}' [-Wformat=] fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); ^ ../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)': ../minia/Debloom.cpp:29:39: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_debloom_write), 0); //erase previous file ^ g++ -lz -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o Kmer_for_kissnp2.o -c Kmer_for_kissnp2.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o Extension.o -c Extension.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o Extension_Bank.o -c Extension_Bank.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o Starter.o -c Starter.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 Starter.cpp: In member function 'std::id_els Starter::starter_output_graph(Extension_Bank*, GraphOutput, std::id_els)': Starter.cpp:183:165: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t {aka long unsigned int}' [-Wformat=] sprintf (data, "\"length\":%d, \"extremGraphRight\":\"k%d\", \"extremGraphLeft\":\"k%d\"",strlen(substarters_sequences[i]), extremKmerRightId, extremKmerLeftId); ^ Starter.cpp:183:165: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] Starter.cpp:183:165: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] g++ -lz -o commons.o -c commons.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)': read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); ^ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, ht->posLastFind); ^ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^ read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^ read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^ read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)': read_coherence_mapsembler/libchash.cpp:1413:31: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(szMagicKey, 1, 4, fp); ^ read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cchKey); ^ read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cItems); ^ read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cDeletedItems); ^ read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cchKey); ^ read_coherence_mapsembler/libchash.cpp:1429:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(rgchKeys, 1, cchKey, fp); ^ read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL' READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ ^ read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)': read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ ^ read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^ read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro 'READ_UL' READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); ^ g++ -lz -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)': read_coherence_mapsembler/read_coherence.cpp:991:53: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t {aka list_*}' [-Wformat=] substarters[*nb_consensuses]); ^ read_coherence_mapsembler/read_coherence.cpp:1004:69: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t {aka list_*}' [-Wformat=] current_read_group_info->consensus, fragment); ^ g++ -lz -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 read_coherence_mapsembler/interface_libchash.cpp: In function 'void iterate_and_fill_offsets(hash_t)': read_coherence_mapsembler/interface_libchash.cpp:408:102: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t {aka long unsigned int}' [-Wformat=] printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); ^ read_coherence_mapsembler/interface_libchash.cpp:408:102: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] g++ -lz -o BooleanVector.o -c BooleanVector.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o Starter_Bank.o -c Starter_Bank.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 IterativeExtensions.cpp: In static member function 'static void IterativeExtensions::construct_linear_seqs(std::string, std::string, int, std::string, int, int, parcours_t, bool)': IterativeExtensions.cpp:237:126: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] printf("... XXX Stopped extending node %s because %d nodes reached. Was at depth %d.\n", node, nbNodes, depth); ^ g++ -lz -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 Fragment_Bank.cpp: In member function 'void Fragment_Bank::index_fragments_and_init_vector()': Fragment_Bank.cpp:69:113: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t {aka long unsigned int}' [-Wformat=] printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); ^ g++ -lz -o Fragment.o -c Fragment.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 g++ -lz -o GraphOutput.o -c GraphOutput.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 GraphOutput.cpp: In constructor 'GraphOutput::GraphOutput(std::string, int, std::id_els)': GraphOutput.cpp:64:120: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] printf("graph_format=%d first_id_nodes=%lu first_id_edges=%d\n", graph_format, first_id_els.node, first_id_els.edge); ^ GraphOutput.cpp: In member function 'std::id_els GraphOutput::construct_graph(std::string, std::string)': GraphOutput.cpp:585:150: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] fprintf(nodes_file, "\"sequence\":\"%s\", \"direction\":\"%s\", \"firstNodeId\":\"n%d\",\n ", kmerSequence.c_str(),direction.c_str(),nb_els.node); ^ g++ -o mapsembler ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o Kmer_for_kissnp2.o Extension.o Extension_Bank.o Starter.o commons.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o BooleanVector.o Starter_Bank.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler.cpp -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro mapsembler.cpp: In function 'int main(int, char**)': mapsembler.cpp:163:67: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'int64_t {aka long int}' [-Wformat=] printf(" Will use genome_size=%llu\n", genome_size); //TODO format ^ make[2]: Leaving directory '/build/buildd/mapsembler2-2.1.6+dfsg/maps' make[1]: Leaving directory '/build/buildd/mapsembler2-2.1.6+dfsg' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/build/buildd/mapsembler2-2.1.6+dfsg' help2man --help-option=-h --no-discard-stderr --version-string=2.1.6+dfsg ./maps/mapsembler > mapsembler.1 dh_install make[1]: Leaving directory '/build/buildd/mapsembler2-2.1.6+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: mapsembler2 dh_strip debug symbol extraction: packages to act on: mapsembler2 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `mapsembler2-dbgsym' in `../mapsembler2-dbgsym_2.1.6+dfsg-1_arm64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 121 pkgstriptranslations: processing mapsembler2 (in debian/mapsembler2); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mapsembler2/DEBIAN/control, package mapsembler2, directory debian/mapsembler2 pkgstripfiles: PNG optimization for package mapsembler2 took 0 s dpkg-deb: warning: 'debian/mapsembler2/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `mapsembler2' in `../mapsembler2_2.1.6+dfsg-1_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../mapsembler2_2.1.6+dfsg-1_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mapsembler2-2.1.6+dfsg dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140602-1715 Publishing debug debs. chroot-autobuild/build/buildd/mapsembler2_2.1.6+dfsg-1_arm64.deb: new debian package, version 2.0. size 272778 bytes: control archive=1281 bytes. 1456 bytes, 28 lines control 521 bytes, 7 lines md5sums Package: mapsembler2 Version: 2.1.6+dfsg-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 450 Depends: libc6 (>= 2.17), libgcc1 (>= 1:4.7), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.2.3.4), bc Section: science Priority: optional Homepage: http://colibread.inria.fr/mapsembler2/ Description: bioinformatics targeted assembly software Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters). . It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice. . Mapsembler2 may be used for (not limited to): - Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set chroot-autobuild/build/buildd/mapsembler2_2.1.6+dfsg-1_arm64.deb: drwxr-xr-x root/root 0 2014-06-02 17:15 ./ drwxr-xr-x root/root 0 2014-06-02 17:15 ./usr/ drwxr-xr-x root/root 0 2014-06-02 17:15 ./usr/bin/ -rwxr-xr-x root/root 212272 2014-06-02 17:15 ./usr/bin/mapsembler drwxr-xr-x root/root 0 2014-06-02 17:15 ./usr/share/ drwxr-xr-x root/root 0 2014-06-02 17:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-06-02 17:15 ./usr/share/doc/mapsembler2/ -rw-r--r-- root/root 25380 2014-04-09 13:14 ./usr/share/doc/mapsembler2/copyright -rw-r--r-- root/root 293 2014-06-02 12:28 ./usr/share/doc/mapsembler2/changelog.Debian.gz -rw-r--r-- root/root 219 2014-02-01 14:13 ./usr/share/doc/mapsembler2/README.Debian drwxr-xr-x root/root 0 2014-06-02 17:15 ./usr/share/doc/mapsembler2/sample_example/ -rw-r--r-- root/root 113 2014-06-02 08:57 ./usr/share/doc/mapsembler2/sample_example/fragments.fa -rw-r--r-- root/root 179834 2014-06-02 08:57 ./usr/share/doc/mapsembler2/sample_example/reads.fa.gz drwxr-xr-x root/root 0 2014-06-02 17:15 ./usr/share/man/ drwxr-xr-x root/root 0 2014-06-02 17:15 ./usr/share/man/man1/ -rw-r--r-- root/root 1498 2014-06-02 17:15 ./usr/share/man/man1/mapsembler.1.gz mapsembler2_2.1.6+dfsg-1_arm64.changes: Format: 1.8 Date: Thu, 29 May 2014 15:07:28 +0200 Source: mapsembler2 Binary: mapsembler2 Architecture: arm64 Version: 2.1.6+dfsg-1 Distribution: utopic-proposed Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Olivier Sallou Description: mapsembler2 - bioinformatics targeted assembly software Changes: mapsembler2 (2.1.6+dfsg-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 5f6428b80b2a332805d3809a8e82ccf39090b844 272778 mapsembler2_2.1.6+dfsg-1_arm64.deb Checksums-Sha256: f175f1a07c098d368c504caf7f9cf87b18c69a8f3059118daa169044cb6c741e 272778 mapsembler2_2.1.6+dfsg-1_arm64.deb Files: 94f1f65cedf68e250a45f9ab47313396 272778 science optional mapsembler2_2.1.6+dfsg-1_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140602-1715 Build needed 00:01:10, 11952k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6062448'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6062448/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6062448'] Unmounting chroot for build PACKAGEBUILD-6062448... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6062448'] Removing build PACKAGEBUILD-6062448