RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '2054b3157680f843eca0965abbef98162d0fb488', '/home/buildd/filecache-default/a5ddb38986336bf08a7675b74e22ef2eee60e7c4'] Synching the system clock with the buildd NTP service... 27 Jul 19:33:56 ntpdate[4704]: adjust time server 10.211.37.1 offset 0.002808 sec Unpacking chroot for build 2054b3157680f843eca0965abbef98162d0fb488 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '2054b3157680f843eca0965abbef98162d0fb488'] Mounting chroot for build 2054b3157680f843eca0965abbef98162d0fb488 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '2054b3157680f843eca0965abbef98162d0fb488', 'deb http://ftpmaster.internal/ubuntu oneiric main universe'] Overriding sources.list in build-2054b3157680f843eca0965abbef98162d0fb488 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '2054b3157680f843eca0965abbef98162d0fb488', 'i386'] Updating debian chroot for build 2054b3157680f843eca0965abbef98162d0fb488 Ign http://ftpmaster.internal oneiric InRelease Get:1 http://ftpmaster.internal oneiric Release.gpg [198 B] Get:2 http://ftpmaster.internal oneiric Release [39.8 kB] Get:3 http://ftpmaster.internal oneiric/main i386 Packages [1602 kB] Get:4 http://ftpmaster.internal oneiric/universe i386 Packages [6382 kB] Ign http://ftpmaster.internal oneiric/main TranslationIndex Ign http://ftpmaster.internal oneiric/universe TranslationIndex Ign http://ftpmaster.internal oneiric/main Translation-en Ign http://ftpmaster.internal oneiric/universe Translation-en Fetched 8024 kB in 8s (904 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files base-passwd cpp cpp-4.6 g++ g++-4.6 gcc gcc-4.6 gcc-4.6-base grep libacl1 libattr1 libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libglib2.0-0 libgomp1 libkeyutils1 libmpfr4 libplymouth2 libquadmath0 libstdc++6 libstdc++6-4.6-dev libudev0 libusb-0.1-4 linux-libc-dev multiarch-support plymouth udev upstart 34 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 35.7 MB of archives. After this operation, 139 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files grep upstart libc-dev-bin libc6-dev libc-bin libc6 libudev0 linux-libc-dev libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 libmpfr4 base-passwd libattr1 libacl1 libglib2.0-0 libkeyutils1 apt libusb-0.1-4 multiarch-support udev plymouth libplymouth2 apt-transport-https cpp gcc g++ Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main base-files i386 6.4ubuntu3 [65.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main grep i386 2.9-1 [244 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main upstart i386 1.3-0ubuntu4 [286 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main libc-dev-bin i386 2.13-9ubuntu3 [72.4 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main libc6-dev i386 2.13-9ubuntu3 [4803 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libc-bin i386 2.13-9ubuntu3 [908 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libc6 i386 2.13-9ubuntu3 [3789 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main libudev0 i386 172-0ubuntu4 [34.3 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main linux-libc-dev i386 3.0.0-7.8 [804 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main libgomp1 i386 4.6.1-5ubuntu2 [28.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6-base i386 4.6.1-5ubuntu2 [15.8 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libgcc1 i386 1:4.6.1-5ubuntu2 [54.3 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main cpp-4.6 i386 4.6.1-5ubuntu2 [4611 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main libquadmath0 i386 4.6.1-5ubuntu2 [195 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6-4.6-dev i386 4.6.1-5ubuntu2 [1590 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main g++-4.6 i386 4.6.1-5ubuntu2 [6185 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6 i386 4.6.1-5ubuntu2 [7543 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6 i386 4.6.1-5ubuntu2 [340 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main libmpfr4 i386 3.0.1-5 [188 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main base-passwd i386 3.5.23 [38.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main libattr1 i386 1:2.4.46-3 [11.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main libacl1 i386 2.2.51-3 [18.5 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main libglib2.0-0 i386 2.29.14-0ubuntu1 [1147 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main libkeyutils1 i386 1.4-6 [6798 B] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main apt i386 0.8.15.4ubuntu1 [2104 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main libusb-0.1-4 i386 2:0.1.12-18 [16.5 kB] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main multiarch-support i386 2.13-9ubuntu3 [4474 B] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main udev i386 172-0ubuntu4 [363 kB] Get:29 http://ftpmaster.internal/ubuntu/ oneiric/main plymouth i386 0.8.2-2ubuntu25 [122 kB] Get:30 http://ftpmaster.internal/ubuntu/ oneiric/main libplymouth2 i386 0.8.2-2ubuntu25 [90.9 kB] Get:31 http://ftpmaster.internal/ubuntu/ oneiric/main apt-transport-https i386 0.8.15.4ubuntu1 [18.6 kB] Get:32 http://ftpmaster.internal/ubuntu/ oneiric/main cpp i386 4:4.6.1-2ubuntu3 [27.8 kB] Get:33 http://ftpmaster.internal/ubuntu/ oneiric/main gcc i386 4:4.6.1-2ubuntu3 [5110 B] Get:34 http://ftpmaster.internal/ubuntu/ oneiric/main g++ i386 4:4.6.1-2ubuntu3 [1436 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.7 MB in 1s (21.4 MB/s) (Reading database ... 14183 files and directories currently installed.) Preparing to replace base-files 6.4ubuntu2 (using .../base-files_6.4ubuntu3_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.4ubuntu3) ... (Reading database ... 14183 files and directories currently installed.) Preparing to replace grep 2.8-2 (using .../archives/grep_2.9-1_i386.deb) ... Unpacking replacement grep ... Setting up grep (2.9-1) ... (Reading database ... 14183 files and directories currently installed.) Preparing to replace upstart 1.3-0ubuntu3 (using .../upstart_1.3-0ubuntu4_i386.deb) ... Unpacking replacement upstart ... Preparing to replace libc-dev-bin 2.13-9ubuntu2 (using .../libc-dev-bin_2.13-9ubuntu3_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.13-9ubuntu2 (using .../libc6-dev_2.13-9ubuntu3_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.13-9ubuntu2 (using .../libc-bin_2.13-9ubuntu3_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-9ubuntu3) ... (Reading database ... 14183 files and directories currently installed.) Preparing to replace libc6 2.13-9ubuntu2 (using .../libc6_2.13-9ubuntu3_i386.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-9ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14183 files and directories currently installed.) Preparing to replace libudev0 172-0ubuntu3 (using .../libudev0_172-0ubuntu4_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace linux-libc-dev 3.0.0-5.6 (using .../linux-libc-dev_3.0.0-7.8_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.6.1-4ubuntu1 (using .../libgomp1_4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-4ubuntu1 (using .../gcc-4.6-base_4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-5ubuntu2) ... (Reading database ... 14183 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-4ubuntu1 (using .../libgcc1_1%3a4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-5ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14183 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-4ubuntu1 (using .../cpp-4.6_4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-4ubuntu1 (using .../libquadmath0_4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-4ubuntu1 (using .../libstdc++6-4.6-dev_4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-4ubuntu1 (using .../g++-4.6_4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-4ubuntu1 (using .../gcc-4.6_4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-4ubuntu1 (using .../libstdc++6_4.6.1-5ubuntu2_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-5ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14185 files and directories currently installed.) Preparing to replace libmpfr4 3.0.1-4 (using .../libmpfr4_3.0.1-5_i386.deb) ... Unpacking replacement libmpfr4 ... Preparing to replace base-passwd 3.5.22 (using .../base-passwd_3.5.23_i386.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.23) ... (Reading database ... 14187 files and directories currently installed.) Preparing to replace libattr1 1:2.4.46-1 (using .../libattr1_1%3a2.4.46-3_i386.deb) ... Unpacking replacement libattr1 ... Setting up libattr1 (1:2.4.46-3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14187 files and directories currently installed.) Preparing to replace libacl1 2.2.51-1 (using .../libacl1_2.2.51-3_i386.deb) ... Unpacking replacement libacl1 ... Setting up libacl1 (2.2.51-3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14187 files and directories currently installed.) Preparing to replace libglib2.0-0 2.29.10-0ubuntu2 (using .../libglib2.0-0_2.29.14-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libkeyutils1 1.4-5 (using .../libkeyutils1_1.4-6_i386.deb) ... Unpacking replacement libkeyutils1 ... Preparing to replace apt 0.8.15.2ubuntu1 (using .../apt_0.8.15.4ubuntu1_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.15.4ubuntu1) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14187 files and directories currently installed.) Preparing to replace libusb-0.1-4 2:0.1.12-17 (using .../libusb-0.1-4_2%3a0.1.12-18_i386.deb) ... Unpacking replacement libusb-0.1-4 ... Setting up libusb-0.1-4 (2:0.1.12-18) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14187 files and directories currently installed.) Preparing to replace multiarch-support 2.13-9ubuntu2 (using .../multiarch-support_2.13-9ubuntu3_i386.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-9ubuntu3) ... (Reading database ... 14187 files and directories currently installed.) Preparing to replace udev 172-0ubuntu3 (using .../udev_172-0ubuntu4_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace plymouth 0.8.2-2ubuntu24 (using .../plymouth_0.8.2-2ubuntu25_i386.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2 0.8.2-2ubuntu24 (using .../libplymouth2_0.8.2-2ubuntu25_i386.deb) ... Unpacking replacement libplymouth2 ... Preparing to replace apt-transport-https 0.8.15.2ubuntu1 (using .../apt-transport-https_0.8.15.4ubuntu1_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace cpp 4:4.6.1-2ubuntu2 (using .../cpp_4%3a4.6.1-2ubuntu3_i386.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.6.1-2ubuntu2 (using .../gcc_4%3a4.6.1-2ubuntu3_i386.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.6.1-2ubuntu2 (using .../g++_4%3a4.6.1-2ubuntu3_i386.deb) ... Unpacking replacement g++ ... Setting up libudev0 (172-0ubuntu4) ... Setting up upstart (1.3-0ubuntu4) ... Setting up libc-dev-bin (2.13-9ubuntu3) ... Setting up linux-libc-dev (3.0.0-7.8) ... Setting up libc6-dev (2.13-9ubuntu3) ... Setting up libgomp1 (4.6.1-5ubuntu2) ... Setting up libmpfr4 (3.0.1-5) ... Setting up cpp-4.6 (4.6.1-5ubuntu2) ... Setting up libquadmath0 (4.6.1-5ubuntu2) ... Setting up gcc-4.6 (4.6.1-5ubuntu2) ... Setting up libglib2.0-0 (2.29.14-0ubuntu1) ... Setting up libkeyutils1 (1.4-6) ... Setting up udev (172-0ubuntu4) ... Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up libplymouth2 (0.8.2-2ubuntu25) ... Setting up plymouth (0.8.2-2ubuntu25) ... update-initramfs: deferring update (trigger activated) Setting up apt-transport-https (0.8.15.4ubuntu1) ... Setting up cpp (4:4.6.1-2ubuntu3) ... Setting up gcc (4:4.6.1-2ubuntu3) ... Setting up libstdc++6-4.6-dev (4.6.1-5ubuntu2) ... Setting up g++-4.6 (4.6.1-5ubuntu2) ... Setting up g++ (4:4.6.1-2ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '2054b3157680f843eca0965abbef98162d0fb488', 'i386', 'oneiric', '--nolog', '--batch', '--archive=ubuntu', '--dist=oneiric', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'massxpert_3.0.0-1.dsc'] Initiating build 2054b3157680f843eca0965abbef98162d0fb488 with 2 processor cores. Automatic build of massxpert_3.0.0-1 on rothera by sbuild/i386 1.170.5 Build started at 20110727-1934 ****************************************************************************** massxpert_3.0.0-1.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.50~), libqt4-dev (>= 4.4.3), cmake (>= 2.6.0), texlive-latex-recommended, texlive-fonts-recommended sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing libqt4-dev: missing cmake: missing texlive-latex-recommended: missing texlive-fonts-recommended: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper libqt4-dev cmake texlive-latex-recommended texlive-fonts-recommended Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data ed emacsen-common file fontconfig fontconfig-config gettext gettext-base groff-base html2text intltool-debian libarchive1 libaudio2 libcroco3 libcurl3 libexpat1 libfontconfig1 libfreetype6 libice6 libjpeg62 libkpathsea5 liblcms1 libmagic1 libmng1 libpipeline1 libpoppler13 libqt4-dbus libqt4-declarative libqt4-designer libqt4-help libqt4-network libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libsm6 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmlrpc-core-c3-0 libxmu6 libxpm4 libxrender1 libxt6 luatex man-db mime-support po-debconf qt4-linguist-tools qt4-qmake tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-latex-base ttf-dejavu-core ucf x11-common Suggested packages: wamerican wordlist whois vacation dh-make defoma gettext-doc groff nas liblcms-utils poppler-data libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles qt4-qmlviewer libmysqlclient-dev libpq-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev qt4-qtconfig less www-browser libmail-box-perl perl-tk ghostscript xpdf-reader pdf-viewer gv postscript-viewer Recommended packages: curl wget lynx-cur libqt4-opengl-dev libqtwebkit-dev libqt4-sql-mysql libqt4-sql-odbc libqt4-sql-psql libqt4-sql-sqlite libcups2 xml-core texlive-luatex libmail-sendmail-perl lmodern texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-recommended-doc prosper latex-beamer latex-xcolor The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper ed emacsen-common file fontconfig fontconfig-config gettext gettext-base groff-base html2text intltool-debian libarchive1 libaudio2 libcroco3 libcurl3 libexpat1 libfontconfig1 libfreetype6 libice6 libjpeg62 libkpathsea5 liblcms1 libmagic1 libmng1 libpipeline1 libpoppler13 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-help libqt4-network libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libsm6 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmlrpc-core-c3-0 libxmu6 libxpm4 libxrender1 libxt6 luatex man-db mime-support po-debconf qt4-linguist-tools qt4-qmake tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ttf-dejavu-core ucf x11-common 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 77.6 MB of archives. After this operation, 248 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxrender1 libcurl3 x11-common libice6 libsm6 libjpeg62 libtiff4 libxi6 libxt6 libmagic1 file mime-support bsdmainutils ed gettext-base groff-base libxml2 man-db libarchive1 libxmlrpc-core-c3-0 emacsen-common cmake-data cmake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper fontconfig libaudio2 libkpathsea5 liblcms1 libmng1 libpoppler13 libqtcore4 libqt4-xml libqt4-dbus libqt4-network libqt4-script libqt4-sql libqt4-xmlpatterns libqtgui4 libqt4-declarative libqt4-designer libqt4-help libqt4-qt3support libqt4-scripttools libqt4-svg libqt4-test qt4-linguist-tools qt4-qmake libqt4-dev libxmu6 libxpm4 libxaw7 luatex tex-common texlive-common texlive-doc-base texlive-binaries texlive-base texlive-fonts-recommended texlive-latex-base texlive-latex-recommended Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main libexpat1 i386 2.0.1-7ubuntu3 [135 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libfreetype6 i386 2.4.4-2 [337 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main ttf-dejavu-core all 2.33-1 [1550 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main fontconfig-config all 2.8.0-3ubuntu1 [44.2 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libfontconfig1 i386 2.8.0-3ubuntu1 [125 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libpipeline1 i386 1.2.0-3 [25.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main libxau6 i386 1:1.0.6-3 [8258 B] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main libxdmcp6 i386 1:1.1.0-3 [12.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main libxcb1 i386 1.7-3 [44.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-data all 2:1.4.3-2ubuntu1 [168 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-6 i386 2:1.4.3-2ubuntu1 [773 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libxext6 i386 2:1.3.0-3 [34.8 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main libxrender1 i386 1:0.9.6-2 [20.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libcurl3 i386 7.21.6-3ubuntu2 [235 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main x11-common all 1:7.6+7ubuntu6 [56.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libice6 i386 2:1.0.7-2 [44.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main libsm6 i386 2:1.2.0-2 [17.6 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main libjpeg62 i386 6b1-1ubuntu1 [80.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main libtiff4 i386 3.9.5-1ubuntu1 [143 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main libxi6 i386 2:1.4.3-3ubuntu1 [31.2 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main libxt6 i386 1:1.1.1-2 [180 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main libmagic1 i386 5.04-5ubuntu2 [204 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main file i386 5.04-5ubuntu2 [22.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main bsdmainutils i386 8.2.3 [196 kB] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main ed i386 1.5-1 [56.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main gettext-base i386 0.18.1.1-3ubuntu1 [56.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ oneiric/main groff-base i386 1.21-6 [1024 kB] Get:30 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2 i386 2.7.8.dfsg-3 [662 kB] Get:31 http://ftpmaster.internal/ubuntu/ oneiric/main man-db i386 2.6.0.2-2 [717 kB] Get:32 http://ftpmaster.internal/ubuntu/ oneiric/main libarchive1 i386 2.8.4-1 [153 kB] Get:33 http://ftpmaster.internal/ubuntu/ oneiric/main libxmlrpc-core-c3-0 i386 1.16.32-0ubuntu3 [105 kB] Get:34 http://ftpmaster.internal/ubuntu/ oneiric/main emacsen-common all 1.4.19ubuntu2 [17.7 kB] Get:35 http://ftpmaster.internal/ubuntu/ oneiric/main cmake-data all 2.8.5-1ubuntu1 [709 kB] Get:36 http://ftpmaster.internal/ubuntu/ oneiric/main cmake i386 2.8.5-1ubuntu1 [4234 kB] Get:37 http://ftpmaster.internal/ubuntu/ oneiric/main html2text i386 1.3.2a-15 [101 kB] Get:38 http://ftpmaster.internal/ubuntu/ oneiric/main libcroco3 i386 0.6.2-1 [92.5 kB] Get:39 http://ftpmaster.internal/ubuntu/ oneiric/main libunistring0 i386 0.9.3-4 [431 kB] Get:40 http://ftpmaster.internal/ubuntu/ oneiric/main gettext i386 0.18.1.1-3ubuntu1 [1180 kB] Get:41 http://ftpmaster.internal/ubuntu/ oneiric/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:42 http://ftpmaster.internal/ubuntu/ oneiric/main po-debconf all 1.0.16+nmu1 [212 kB] Get:43 http://ftpmaster.internal/ubuntu/ oneiric/main debhelper all 8.9.0ubuntu1 [487 kB] Get:44 http://ftpmaster.internal/ubuntu/ oneiric/main fontconfig i386 2.8.0-3ubuntu1 [156 kB] Get:45 http://ftpmaster.internal/ubuntu/ oneiric/main libaudio2 i386 1.9.2-7 [58.5 kB] Get:46 http://ftpmaster.internal/ubuntu/ oneiric/main libkpathsea5 i386 2009-8ubuntu2 [51.9 kB] Get:47 http://ftpmaster.internal/ubuntu/ oneiric/main liblcms1 i386 1.19.dfsg-1 [109 kB] Get:48 http://ftpmaster.internal/ubuntu/ oneiric/main libmng1 i386 1.0.10-1 [214 kB] Get:49 http://ftpmaster.internal/ubuntu/ oneiric/main libpoppler13 i386 0.16.7-2ubuntu1 [740 kB] Get:50 http://ftpmaster.internal/ubuntu/ oneiric/main libqtcore4 i386 4:4.7.3-4ubuntu2 [1867 kB] Get:51 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-xml i386 4:4.7.3-4ubuntu2 [93.1 kB] Get:52 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-dbus i386 4:4.7.3-4ubuntu2 [196 kB] Get:53 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-network i386 4:4.7.3-4ubuntu2 [533 kB] Get:54 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-script i386 4:4.7.3-4ubuntu2 [800 kB] Get:55 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-sql i386 4:4.7.3-4ubuntu2 [99.5 kB] Get:56 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-xmlpatterns i386 4:4.7.3-4ubuntu2 [1051 kB] Get:57 http://ftpmaster.internal/ubuntu/ oneiric/main libqtgui4 i386 4:4.7.3-4ubuntu2 [4054 kB] Get:58 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-declarative i386 4:4.7.3-4ubuntu2 [969 kB] Get:59 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-designer i386 4:4.7.3-4ubuntu2 [3703 kB] Get:60 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-help i386 4:4.7.3-4ubuntu2 [202 kB] Get:61 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-qt3support i386 4:4.7.3-4ubuntu2 [1056 kB] Get:62 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-scripttools i386 4:4.7.3-4ubuntu2 [227 kB] Get:63 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-svg i386 4:4.7.3-4ubuntu2 [139 kB] Get:64 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-test i386 4:4.7.3-4ubuntu2 [56.7 kB] Get:65 http://ftpmaster.internal/ubuntu/ oneiric/main qt4-linguist-tools i386 4:4.7.3-4ubuntu2 [849 kB] Get:66 http://ftpmaster.internal/ubuntu/ oneiric/main qt4-qmake i386 4:4.7.3-4ubuntu2 [1219 kB] Get:67 http://ftpmaster.internal/ubuntu/ oneiric/main libqt4-dev i386 4:4.7.3-4ubuntu2 [2379 kB] Get:68 http://ftpmaster.internal/ubuntu/ oneiric/main libxmu6 i386 2:1.1.0-2 [52.3 kB] Get:69 http://ftpmaster.internal/ubuntu/ oneiric/main libxpm4 i386 1:3.5.9-1ubuntu1 [35.3 kB] Get:70 http://ftpmaster.internal/ubuntu/ oneiric/main libxaw7 i386 2:1.0.9-2 [183 kB] Get:71 http://ftpmaster.internal/ubuntu/ oneiric/main luatex i386 0.70.1-1 [2366 kB] Get:72 http://ftpmaster.internal/ubuntu/ oneiric/main tex-common all 2.10 [709 kB] Get:73 http://ftpmaster.internal/ubuntu/ oneiric/main texlive-common all 2009-11 [101 kB] Get:74 http://ftpmaster.internal/ubuntu/ oneiric/main texlive-doc-base all 2009-2 [1339 kB] Get:75 http://ftpmaster.internal/ubuntu/ oneiric/main texlive-binaries i386 2009-8ubuntu2 [7386 kB] Get:76 http://ftpmaster.internal/ubuntu/ oneiric/main texlive-base all 2009-11 [14.7 MB] Get:77 http://ftpmaster.internal/ubuntu/ oneiric/main texlive-fonts-recommended all 2009-11 [7166 kB] Get:78 http://ftpmaster.internal/ubuntu/ oneiric/main texlive-latex-base all 2009-11 [1342 kB] Get:79 http://ftpmaster.internal/ubuntu/ oneiric/main texlive-latex-recommended all 2009-11 [6588 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.6 MB in 3s (22.0 MB/s) Selecting previously deselected package libexpat1. (Reading database ... 14187 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_i386.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_i386.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu2ubuntu1_all.deb) ... Moving old data out of the way Selecting previously deselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3ubuntu1_all.deb) ... Selecting previously deselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3ubuntu1_i386.deb) ... Selecting previously deselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_i386.deb) ... Selecting previously deselected package libxau6. 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Unpacking luatex (from .../luatex_0.70.1-1_i386.deb) ... Selecting previously deselected package tex-common. Unpacking tex-common (from .../tex-common_2.10_all.deb) ... Selecting previously deselected package texlive-common. Unpacking texlive-common (from .../texlive-common_2009-11_all.deb) ... Selecting previously deselected package texlive-doc-base. Unpacking texlive-doc-base (from .../texlive-doc-base_2009-2_all.deb) ... Selecting previously deselected package texlive-binaries. Unpacking texlive-binaries (from .../texlive-binaries_2009-8ubuntu2_i386.deb) ... Selecting previously deselected package texlive-base. Unpacking texlive-base (from .../texlive-base_2009-11_all.deb) ... Selecting previously deselected package texlive-fonts-recommended. Unpacking texlive-fonts-recommended (from .../texlive-fonts-recommended_2009-11_all.deb) ... Selecting previously deselected package texlive-latex-base. Unpacking texlive-latex-base (from .../texlive-latex-base_2009-11_all.deb) ... Selecting previously deselected package texlive-latex-recommended. Unpacking texlive-latex-recommended (from .../texlive-latex-recommended_2009-11_all.deb) ... Setting up libexpat1 (2.0.1-7ubuntu3) ... Setting up libfreetype6 (2.4.4-2) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-1) ... Setting up fontconfig-config (2.8.0-3ubuntu1) ... Setting up libfontconfig1 (2.8.0-3ubuntu1) ... Setting up libpipeline1 (1.2.0-3) ... Setting up libxau6 (1:1.0.6-3) ... Setting up libxdmcp6 (1:1.1.0-3) ... Setting up libxcb1 (1.7-3) ... Setting up libx11-data (2:1.4.3-2ubuntu1) ... Setting up libx11-6 (2:1.4.3-2ubuntu1) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up libcurl3 (7.21.6-3ubuntu2) ... Setting up x11-common (1:7.6+7ubuntu6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6 (2:1.0.7-2) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libjpeg62 (6b1-1ubuntu1) ... Setting up libtiff4 (3.9.5-1ubuntu1) ... Setting up libxi6 (2:1.4.3-3ubuntu1) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libmagic1 (5.04-5ubuntu2) ... Setting up file (5.04-5ubuntu2) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up ed (1.5-1) ... Setting up gettext-base (0.18.1.1-3ubuntu1) ... Setting up groff-base (1.21-6) ... Setting up libxml2 (2.7.8.dfsg-3) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libarchive1 (2.8.4-1) ... Setting up libxmlrpc-core-c3-0 (1.16.32-0ubuntu3) ... Setting up emacsen-common (1.4.19ubuntu2) ... emacsen-common: Handling install of emacsen flavor emacs install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package emacsen-common should be updated. Setting up cmake-data (2.8.5-1ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.5-1ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-3ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.0ubuntu1) ... Setting up fontconfig (2.8.0-3ubuntu1) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libaudio2 (1.9.2-7) ... Setting up libkpathsea5 (2009-8ubuntu2) ... Setting up liblcms1 (1.19.dfsg-1) ... Setting up libmng1 (1.0.10-1) ... Setting up libpoppler13 (0.16.7-2ubuntu1) ... Setting up libqtcore4 (4:4.7.3-4ubuntu2) ... Setting up libqt4-xml (4:4.7.3-4ubuntu2) ... Setting up libqt4-dbus (4:4.7.3-4ubuntu2) ... Setting up libqt4-network (4:4.7.3-4ubuntu2) ... Setting up libqt4-script (4:4.7.3-4ubuntu2) ... Setting up libqt4-sql (4:4.7.3-4ubuntu2) ... Setting up libqt4-xmlpatterns (4:4.7.3-4ubuntu2) ... Setting up libqt4-test (4:4.7.3-4ubuntu2) ... Setting up qt4-linguist-tools (4:4.7.3-4ubuntu2) ... update-alternatives: using /usr/bin/lupdate-qt4 to provide /usr/bin/lupdate (lupdate) in auto mode. update-alternatives: using /usr/bin/lrelease-qt4 to provide /usr/bin/lrelease (lrelease) in auto mode. Setting up qt4-qmake (4:4.7.3-4ubuntu2) ... update-alternatives: using /usr/bin/qmake-qt4 to provide /usr/bin/qmake (qmake) in auto mode. Setting up libxmu6 (2:1.1.0-2) ... Setting up libxpm4 (1:3.5.9-1ubuntu1) ... Setting up libxaw7 (2:1.0.9-2) ... Setting up luatex (0.70.1-1) ... texlive-base is not ready, cannot create formats Setting up tex-common (2.10) ... Creating config file /etc/texmf/texmf.d/05TeXMF.cnf with new version Creating config file /etc/texmf/texmf.d/15Plain.cnf with new version Creating config file /etc/texmf/texmf.d/45TeXinputs.cnf with new version Creating config file /etc/texmf/texmf.d/55Fonts.cnf with new version Creating config file /etc/texmf/texmf.d/65BibTeX.cnf with new version Creating config file /etc/texmf/texmf.d/75DviPS.cnf with new version Creating config file /etc/texmf/texmf.d/80DVIPDFMx.cnf with new version Creating config file /etc/texmf/texmf.d/85Misc.cnf with new version Creating config file /etc/texmf/texmf.d/90TeXDoc.cnf with new version Creating config file /etc/texmf/texmf.d/95NonPath.cnf with new version Creating config file /etc/texmf/updmap.d/00updmap.cfg with new version Creating config file /etc/texmf/texmf.cnf with new version Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-common (2009-11) ... Setting up texlive-doc-base (2009-2) ... Setting up texlive-binaries (2009-8ubuntu2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. Building format(s) --refresh. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2009-11) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building e-tex based formats --byhyphen /var/lib/texmf/tex/generic/config/language.def. This may take some time... done. Setting up texlive-fonts-recommended (2009-11) ... Setting up texlive-latex-base (2009-11) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-recommended (2009-11) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up libqt4-declarative (4:4.7.3-4ubuntu2) ... Setting up libqtgui4 (4:4.7.3-4ubuntu2) ... Setting up libqt4-designer (4:4.7.3-4ubuntu2) ... Setting up libqt4-help (4:4.7.3-4ubuntu2) ... Setting up libqt4-qt3support (4:4.7.3-4ubuntu2) ... Setting up libqt4-scripttools (4:4.7.3-4ubuntu2) ... Setting up libqt4-svg (4:4.7.3-4ubuntu2) ... Setting up libqt4-dev (4:4.7.3-4ubuntu2) ... update-alternatives: using /usr/bin/moc-qt4 to provide /usr/bin/moc (moc) in auto mode. update-alternatives: using /usr/bin/uic-qt4 to provide /usr/bin/uic (uic) in auto mode. update-alternatives: warning: skip creation of /usr/share/man/man1/uic.1.gz because associated file /usr/share/man/man1/uic-qt4.1.gz (of link group uic) doesn't exist. Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-9ubuntu3 make_3.81-8.1ubuntu1 dpkg-dev_1.16.0.3ubuntu3 gcc-4.6_4.6.1-5ubuntu2 g++-4.6_4.6.1-5ubuntu2 binutils_2.21.52.20110707-1ubuntu1 libstdc++6-4.6-dev_4.6.1-5ubuntu2 libstdc++6_4.6.1-5ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Jul 22 14:48:57 2011 UTC using DSA key ID C78F687C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./massxpert_3.0.0-1.dsc dpkg-source: info: extracting massxpert in massxpert-3.0.0 dpkg-source: info: unpacking massxpert_3.0.0.orig.tar.gz dpkg-source: info: unpacking massxpert_3.0.0-1.debian.tar.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package massxpert dpkg-buildpackage: source version 3.0.0-1 dpkg-source --before-build massxpert-3.0.0 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean "---------------------------------------" NUMJOBS: 2 MAKEFLAGS: -j2 DEB_BUILD_OPTIONS: parallel=2 "---------------------------------------" dh_testdir dh_testroot dh_clean rm -f debian/massxpert.substvars rm -f debian/massxpert.*.debhelper rm -rf debian/massxpert/ rm -f debian/massxpert-data.substvars rm -f debian/massxpert-data.*.debhelper rm -rf debian/massxpert-data/ rm -f debian/massxpert-doc.substvars rm -f debian/massxpert-doc.*.debhelper rm -rf debian/massxpert-doc/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp rm -rf /build/buildd/massxpert-3.0.0/debian/build-indep rm -rf /build/buildd/massxpert-3.0.0/debian/build-arch rm -rf /build/buildd/massxpert-3.0.0/debian/tmp-indep /build/buildd/massxpert-3.0.0/debian/tmp-arch debian/rules build "---------------------------------------" NUMJOBS: 2 MAKEFLAGS: -j2 DEB_BUILD_OPTIONS: parallel=2 "---------------------------------------" dh_testdir dh_prep -i rm -f debian/massxpert-data.substvars rm -f debian/massxpert-data.*.debhelper rm -rf debian/massxpert-data/ rm -f debian/massxpert-doc.substvars rm -f debian/massxpert-doc.*.debhelper rm -rf debian/massxpert-doc/ rm -rf /build/buildd/massxpert-3.0.0/debian/tmp-indep mkdir -p /build/buildd/massxpert-3.0.0/debian/build-indep cd /build/buildd/massxpert-3.0.0/debian/build-indep && /usr/bin/cmake -D BUILD_PROGRAM=0 -D BUILD_DATA=1 \ -D BUILD_USERMANUAL=1 -D CMAKE_INSTALL_PREFIX=/usr ../.. -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done ~~~~~~~~~~~~~~~~~~~~~~~~ SUMMARY ~~~~~~~~~~~~~~~~~~~~~~~~ -- BUILD_PROGRAM:0 -- BUILD_DATA:1 -- BUILD_USERMANUAL:1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -- TARGET: massxpert--VERSION: 3.0.0 -- CMAKE_INSTALL_PREFIX: /usr -- MASSXPERT_BIN_DIR: /usr/bin -- MASSXPERT_DATA_DIR: /usr/share/massxpert -- MASSXPERT_PLUGIN_DIR: /usr/lib/massxpert/plugins -- MASSXPERT_LOCALE_DIR: /usr/share/massxpert/locales -- MASSXPERT_DOC_DIR: /usr/share/doc/massxpert -- MASSXPERT_USERMAN_DIR: /usr/share/doc/massxpert/usermanual ~~~~~~~~~~~~~~~~~~~~~~~~ SUMMARY ~~~~~~~~~~~~~~~~~~~~~~~~ -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/massxpert-3.0.0/debian/build-indep # No more this way, as we now use CMake with UseLATEX.cmake # cd /build/buildd/massxpert-3.0.0/usermanual && /usr/bin/make -f Makefile all_no_reload /usr/bin/make -C /build/buildd/massxpert-3.0.0/debian/build-indep make[1]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/cmake -H/build/buildd/massxpert-3.0.0 -B/build/buildd/massxpert-3.0.0/debian/build-indep --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/make -f usermanual/CMakeFiles/pdf.dir/build.make usermanual/CMakeFiles/pdf.dir/depend make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-indep' cd /build/buildd/massxpert-3.0.0/debian/build-indep && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 /build/buildd/massxpert-3.0.0/usermanual /build/buildd/massxpert-3.0.0/debian/build-indep /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/CMakeFiles/pdf.dir/DependInfo.cmake --color= Scanning dependencies of target pdf make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/make -f usermanual/CMakeFiles/pdf.dir/build.make usermanual/CMakeFiles/pdf.dir/build make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/cmake -E 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/build/buildd/massxpert-3.0.0/usermanual/figures/macosx-configuration-settings.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/macosx-configuration-settings.png cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/macosx-disk-image-on-desktop.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/macosx-disk-image-on-desktop.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles [ 0%] /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles Generating figures/macosx-disk-image-opened-in-finder.png [ 0%] cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/macosx-disk-image-opened-in-finder.png 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/build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/massxpert-configuration-settings-dlg.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/massxpert-configuration-settings-dlg.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles [ 0%] Generating figures/nucac-polymer.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles [ 0%] cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/nucac-polymer.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/nucac-polymer.png Generating figures/nucacbond-formation.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/nucacbond-formation.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/nucacbond-formation.png [ 0%] Generating figures/peptbond-formation.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles [ 0%] cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/peptbond-formation.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/peptbond-formation.png Generating figures/pol-chem-defs-directory-protein-and-saccharide.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles [ 0%] cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/pol-chem-defs-directory-protein-and-saccharide.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/pol-chem-defs-directory-protein-and-saccharide.png Generating figures/prot-cleavage.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/prot-cleavage.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/prot-cleavage.png [ 0%] Generating figures/prot-fragmentation.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/prot-fragmentation.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/prot-fragmentation.png [ 0%] /usr/bin/cmake -E cmake_progress_report 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/build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/xpertedit-cross-link-monomers.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/xpertedit-cross-link-monomers.png /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles [ 0%] [ 0%] Generating figures/xpertedit-cross-linked-monomers.png cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/figures/xpertedit-cross-linked-monomers.png /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/figures/xpertedit-cross-linked-monomers.png Generating figures/xpertedit-data-mining-menu.png cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy 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cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles [ 0%] Generating GNU-GPL-3.0.tex cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E copy /build/buildd/massxpert-3.0.0/usermanual/GNU-GPL-3.0.tex /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual/GNU-GPL-3.0.tex cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/pdflatex -interaction=nonstopmode massxpert.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./massxpert.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. 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Also, the graphical operation tha t is to[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # be performed upon chemical modification of a monomer is lis ted ('T'[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # for transparent and 'O' for opaque). See the manual for det ails.[] [117] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # where Phosphorylation is the name of the modification. T in dicates[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # process (O indicates that the visual rendering of the modif ication[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] Overfull \hbox (82.5854pt too wide) in paragraph at lines 272--283 \T1/aer/m/n/10 listed in the file for the mod-i-fi-ca-tion. 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If not, see http://www.gnu.org/l icenses/. ) [173] [174]) (./index.tex No file massxpert.ind. ) (./massxpert.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)pdfTeX warning (dest): name {??} has been referenced but does not exist, replaced by a fixed one Output written on massxpert.pdf (188 pages, 8722199 bytes). Transcript written on massxpert.log. cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/pdflatex -interaction=nonstopmode massxpert.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./massxpert.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. 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Overfull \hbox (8.38528pt too wide) in paragraph at lines 38--42 \T1/aer/m/n/10 fully pro-grammable (that's the \T1/aer/m/sl/10 Xpert-Calc \T1/a er/m/n/10 mod-ule also part of the \T1/aer/m/sl/10 massXpert [1] [2] Overfull \hbox (10.50308pt too wide) in paragraph at lines 168--168 [][]\T1/aer/m/sc/20.74 Program Avail-abil-ity, Tech-ni-cal- [3] Underfull \hbox (badness 10000) in paragraph at lines 196--201 Overfull \hbox (4.74527pt too wide) in paragraph at lines 212--214 []\T1/aer/m/n/10 The \T1/aer/m/sl/10 Xpert-Def \T1/aer/m/n/10 mod-ule (def-i-ni -tion of atoms and of new poly-mer chemistries); [4] [5] Overfull \hbox (19.99072pt too wide) in paragraph at lines 266--270 []\T1/aer/m/n/10 The gen-eral pol-icy for di-rect-ing ques-tions, com-ments, fe a-ture re-quests, \T1/aer/m/sl/10 massXpert Overfull \hbox (6.16531pt too wide) in paragraph at lines 266--270 \T1/aer/m/n/10 pro-gram and/or \T1/aer/m/sl/10 massXpert \T1/aer/m/n/10 doc-u-m en-ta-tion bug re-ports[] should be self-explanatory Underfull \hbox (badness 10000) in paragraph at lines 275--277 [6 <./figures/addresses.png>]) (./installation.tex Chapter 2. 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[15] Underfull \vbox (badness 6876) has occurred while \output is active [16] [17 <./figures/peptbond-formation.png (PNG copy)>] [18 <./figures/prot-polymer.png (PNG copy)>] [19 <./figures/nucacbond-formation.png (PNG cop y)>] [20 <./figures/nucac-polymer.png (PNG copy)>] [21 <./figures/sacchbond-formation.png (PNG cop y)> <./figures/sacch-polymer.png (PNG copy)>] [22] [23] [24 <./figures/prot-cleavage.png (PNG copy )>] [25] [26] [27 <./figures/prot-fragmentation.png (PNG copy)>] Overfull \hbox (1.18713pt too wide) in paragraph at lines 735--736 \T1/aer/bx/it/10 b \T1/aer/bx/n/10 frag-ment se-ries[] \T1/aer/m/n/10 Sim-i-la rly, the mass cal-cu-la-tion is math-e-mat-i-cally ex-pressed [28] Overfull \hbox (9.24484pt too wide) in paragraph at lines 761--772 \T1/aer/m/n/10 sense that they do not hold nei-ther of the two pre-cur-sor poly -mer's ends. \T1/aer/m/sl/10 massXpert [29] [30 <./figures/dna-fragmentation.png ( PNG copy)>] [31] Overfull \hbox (2.33554pt too wide) in paragraph at lines 893--895 \T1/aer/m/n/10 To sum up all what we have seen so far with poly-mer chain dis-r upt-ing chemistries: Overfull \hbox (7.70595pt too wide) in paragraph at lines 914--917 []\T1/aer/m/n/10 Fragments are never ion-ized au-to-mat-i-cally; ion-iza-tion ( gain/loss of a charged [32]) (./basics-massspec.tex Chapter 4. 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In na-ture, biopoly- [48 <./figures/xpertdef-monomers-mass- differences.png>] [49 <./figures/xpertdef-modifications.p ng (PNG copy)>] [50 <./figures/xpertdef-crosslinkers.png ( PNG copy)>] [51 <./figures/xpertdef-cleavages.png>] Overfull \hbox (0.41591pt too wide) in paragraph at lines 547--562 \T1/aer/m/n/10 cleav-age spec-i-fi-ca-tion for ``CyanogenBromide''---that the o ligomers re-sult-ing from [52] Underfull \vbox (badness 10000) has occurred while \output is active [53 <./fig ures/xpertdef-fragmentations-simplest.png>] Underfull \hbox (badness 10000) in paragraph at lines 635--639 [54] [55 <./f igures/xpertdef-fragmentations-special-dna-a-base-case.png>] [56 <./figures/xpertde f-fragmentations-frag-rules.png>] Underfull \hbox (badness 10000) in paragraph at lines 747--758 Underfull \hbox (badness 10000) in paragraph at lines 782--790 [57] [58]) (./xpertcalc.tex Chapter 7. 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Underfull \vbox (badness 10000) has occurred while \output is active [69] Overfull \hbox (0.13066pt too wide) in paragraph at lines 32--32 [][]\T1/aer/m/sl/20.74 XpertEdit \T1/aer/m/sc/20.74 Op-er-a-tion: \T1/aer/m/it/ 20.74 In Me-dias Res[] [70 <./figures/xpertedit-sel ect-sample-sequence.png (PNG copy)>] [71 <./figures/xpertedit-choose-p ol-chem-def.png (PNG copy)>] [72 <./figures/xpertedit-protein-main-view.png (PN G copy)>] [73] Overfull \hbox (20.56702pt too wide) in paragraph at lines 362--365 []\T1/aer/m/sl/10 Chemistry[] \T1/aer/m/n/10 Cal-cu-late the monomeric/element [74] [75 <./figures/xpertedit-file-m enu.png (PNG copy)> <./figures/xpertedit-chemistry-menu.png (PNG copy)>] Overfull \hbox (4.06323pt too wide) in paragraph at lines 435--436 [] [76 <./figures/xpertedit-3-letter-code-whole-process.png (PNG copy)>] [77] [78 <./figures/xp ertedit-sequence-editor-bad-char.png (PNG copy)>] [79 <./figures/xpertedit-find-seq uence-dlg.png>] Underfull \vbox (badness 1297) has occurred while \output is active [80 <./figu res/xpertedit-sequence-editor-sequence-import-errors-first.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 728--730 [81 <./figures/xpertedit-sequence-editor-sequence-import-errors-second.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 770--781 [82] [83] Underfull \vbox (badness 1584) has occurred while \output is active [84 <./figu res/xpertedit-modify-monomer.png>] Underfull \vbox (badness 10000) has occurred while \output is active [85 <./fig ures/xpertedit-modify-monomer-manually-defined-modif.png (PNG copy)>] [86 <./figures/xpertedit-modify-poly mer.png (PNG copy)>] [87 <./figures/xpertedit-cros s-link-monomers.png (PNG copy)>] LaTeX Warning: Float too large for page by 60.94998pt on input line 1145. 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[113] Overfull \hbox (14.57152pt too wide) in paragraph at lines 98--102 []\T1/aett/m/n/10 monomer_dictionary\T1/aer/m/n/10 : file es-tab-lish-ing the r e-la-tion-ship be-tween any monomer [114] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # between the codes of each monomer and their graphic file (p ixmap[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] [115] [116 <./figures/pol-chem-defs-directory-protein-and-saccharide.png (PNG c opy)>] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # This is the modification_dictionary file where the correspo ndences[] Overfull \hbox (21.79932pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # between the name of each modification and their graphic fil e (pixmap[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # sequence editor are made. Also, the graphical operation tha t is to[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # be performed upon chemical modification of a monomer is lis ted ('T'[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # for transparent and 'O' for opaque). See the manual for det ails.[] [117] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # where Phosphorylation is the name of the modification. T in dicates[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # process (O indicates that the visual rendering of the modif ication[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] Overfull \hbox (82.5854pt too wide) in paragraph at lines 272--283 \T1/aer/m/n/10 listed in the file for the mod-i-fi-ca-tion. This is vis-i-ble i n the []\T1/aett/m/n/10 AmidationGlu\%O\%glutamine.svg Overfull \hbox (13.91695pt too wide) in paragraph at lines 284--293 \T1/aer/m/n/10 the ``Phos-pho-ry-la-tion'' mod-i-fi-ca-tion (line []\T1/aett/m/ n/10 Phosphorylation%T%phospho.svg\T1/aer/m/n/10 ), [118] LaTeX Font Warning: Font shape `T1/aett/bx/n' undefined (Font) using `T1/aett/m/n' instead on input line 337. Overfull \hbox (36.91821pt too wide) in paragraph at lines 347--352 \T1/aer/m/n/10 lo-cated in the \T1/aett/m/n/10 dna \T1/aer/m/n/10 di-rec-tory, it-self lo-cated in the \T1/aett/m/n/10 /path/to/definition/directory ) (./appendices.tex [119] [120] Chapter 11. (./protein-1-letter.xml.tex Overfull \hbox (12.51198pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 The Pro-tein Chem-istry Def-i-ni-tion Overfull \hbox (11.31934pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (278.55884pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [121] Overfull \hbox (37.51929pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] Overfull \hbox (89.91919pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]) [149] (./leu-enkephalin.mxp.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (168.51904pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 [] ) [150] (./pka_ph_pi.xml.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 Copyright 2003 2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 [] Underfull \vbox (badness 10000) has occurred while \output is active [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]) [161] (./GNU-GPL-3.0.tex Overfull \hbox (17.38269pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 GNU Gen-eral Pub-lic Li-cense Text [162] [163] [164] [165] [166] [167] [168] [169] Overfull \hbox (1.69012pt too wide) in paragraph at lines 512--516 []\T1/aer/m/n/10 Each con-trib-u-tor grants you a non-exclusive, world-wide, ro yalty-free patent [170] [171] Overfull \hbox (6.92036pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 STATED IN WRIT-ING THE COPY-RIGHT HOLD-ERS AND/OR OTHER Overfull \hbox (2.58072pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 PAR-TIES PRO-VIDE THE PRO-GRAM ``AS IS'' WITH-OUT WAR-RANTY Overfull \hbox (18.23813pt too wide) in paragraph at lines 628--638 []\T1/aer/m/n/10 IN NO EVENT UN-LESS RE-QUIRED BY AP-PLI-CA-BLE LAW OR AGREED Overfull \hbox (5.53944pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 TO IN WRIT-ING WILL ANY COPY-RIGHT HOLDER, OR ANY OTHER Overfull \hbox (9.5637pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 CLUD-ING ANY GEN-ERAL, SPE-CIAL, IN-CI-DEN-TAL OR CON-SE-QUEN- [172] Overfull \hbox (35.02808pt too wide) in paragraph at lines 679--682 \T1/aer/m/n/10 cense along with this pro-gram. If not, see http://www.gnu.org/l icenses/. ) [173] [174]) (./index.tex No file massxpert.ind. ) (./massxpert.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on massxpert.pdf (190 pages, 8797890 bytes). Transcript written on massxpert.log. cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/makeindex massxpert.idx This is makeindex, version 2.15 [TeX Live 2009] (kpathsea + Thai support). Scanning input file massxpert.idx....done (185 entries accepted, 0 rejected). Sorting entries....done (1483 comparisons). Generating output file massxpert.ind....done (232 lines written, 0 warnings). Output written in massxpert.ind. Transcript written in massxpert.ilg. cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/pdflatex -interaction=nonstopmode massxpert.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./massxpert.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. 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Overfull \hbox (8.38528pt too wide) in paragraph at lines 38--42 \T1/aer/m/n/10 fully pro-grammable (that's the \T1/aer/m/sl/10 Xpert-Calc \T1/a er/m/n/10 mod-ule also part of the \T1/aer/m/sl/10 massXpert [1] [2] Overfull \hbox (10.50308pt too wide) in paragraph at lines 168--168 [][]\T1/aer/m/sc/20.74 Program Avail-abil-ity, Tech-ni-cal- [3] Underfull \hbox (badness 10000) in paragraph at lines 196--201 Overfull \hbox (4.74527pt too wide) in paragraph at lines 212--214 []\T1/aer/m/n/10 The \T1/aer/m/sl/10 Xpert-Def \T1/aer/m/n/10 mod-ule (def-i-ni -tion of atoms and of new poly-mer chemistries); [4] [5] Overfull \hbox (19.99072pt too wide) in paragraph at lines 266--270 []\T1/aer/m/n/10 The gen-eral pol-icy for di-rect-ing ques-tions, com-ments, fe a-ture re-quests, \T1/aer/m/sl/10 massXpert Overfull \hbox (6.16531pt too wide) in paragraph at lines 266--270 \T1/aer/m/n/10 pro-gram and/or \T1/aer/m/sl/10 massXpert \T1/aer/m/n/10 doc-u-m en-ta-tion bug re-ports[] should be self-explanatory Underfull \hbox (badness 10000) in paragraph at lines 275--277 [6 <./figures/addresses.png>]) (./installation.tex Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 5--8 [7] Underfull \hbox (badness 10000) in paragraph at lines 86--88 [8] Overfull \hbox (9.62535pt too wide) in paragraph at lines 194--199 \T1/aer/m/n/10 At this point the soft-ware should have in-stalled in the des-ti -na-tion tree (\T1/aett/m/n/10 /usr/local [9] [10] Underfull \hbox (badness 1406) in paragraph at lines 347--347 []\T1/aer/m/n/10 Figure 2.1: []\T1/aer/bx/sl/10 massXpert \T1/aer/bx/n/10 con-f ig-u-ra-tion set-tings. \T1/aer/m/n/10 Upon run-ning the Underfull \hbox (badness 10000) in paragraph at lines 351--362 [11] [12 <./figures/massxpert-configuration-settings-dlg.png>] [13] [14]) (./basics-polchem.tex Chapter 3. Overfull \hbox (1.969pt too wide) in paragraph at lines 13--13 [][]\T1/aer/m/sc/20.74 Polymers? Where? Ev-ery-where![] Overfull \hbox (7.65761pt too wide) in paragraph at lines 26--31 \T1/aer/m/it/10 molecules which are them-selves made from com-bi-na-tions of sm all sim-ple molecules\T1/aer/m/n/10 . [15] Underfull \vbox (badness 6876) has occurred while \output is active [16] [17 <./figures/peptbond-formation.png (PNG copy)>] [18 <./figures/prot-polymer.png (PNG copy)>] [19 <./figures/nucacbond-formation.png (PNG cop y)>] [20 <./figures/nucac-polymer.png (PNG copy)>] [21 <./figures/sacchbond-formation.png (PNG cop y)> <./figures/sacch-polymer.png (PNG copy)>] [22] [23] [24 <./figures/prot-cleavage.png (PNG copy )>] [25] [26] [27 <./figures/prot-fragmentation.png (PNG copy)>] Overfull \hbox (1.18713pt too wide) in paragraph at lines 735--736 \T1/aer/bx/it/10 b \T1/aer/bx/n/10 frag-ment se-ries[] \T1/aer/m/n/10 Sim-i-la rly, the mass cal-cu-la-tion is math-e-mat-i-cally ex-pressed [28] Overfull \hbox (9.24484pt too wide) in paragraph at lines 761--772 \T1/aer/m/n/10 sense that they do not hold nei-ther of the two pre-cur-sor poly -mer's ends. \T1/aer/m/sl/10 massXpert [29] [30 <./figures/dna-fragmentation.png ( PNG copy)>] [31] Overfull \hbox (2.33554pt too wide) in paragraph at lines 893--895 \T1/aer/m/n/10 To sum up all what we have seen so far with poly-mer chain dis-r upt-ing chemistries: Overfull \hbox (7.70595pt too wide) in paragraph at lines 914--917 []\T1/aer/m/n/10 Fragments are never ion-ized au-to-mat-i-cally; ion-iza-tion ( gain/loss of a charged [32]) (./basics-massspec.tex Chapter 4. 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In na-ture, biopoly- [48 <./figures/xpertdef-monomers-mass- differences.png>] [49 <./figures/xpertdef-modifications.p ng (PNG copy)>] [50 <./figures/xpertdef-crosslinkers.png ( PNG copy)>] [51 <./figures/xpertdef-cleavages.png>] Overfull \hbox (0.41591pt too wide) in paragraph at lines 547--562 \T1/aer/m/n/10 cleav-age spec-i-fi-ca-tion for ``CyanogenBromide''---that the o ligomers re-sult-ing from [52] Underfull \vbox (badness 10000) has occurred while \output is active [53 <./fig ures/xpertdef-fragmentations-simplest.png>] Underfull \hbox (badness 10000) in paragraph at lines 635--639 [54] [55 <./f igures/xpertdef-fragmentations-special-dna-a-base-case.png>] [56 <./figures/xpertde f-fragmentations-frag-rules.png>] Underfull \hbox (badness 10000) in paragraph at lines 747--758 Underfull \hbox (badness 10000) in paragraph at lines 782--790 [57] [58]) (./xpertcalc.tex Chapter 7. 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Underfull \vbox (badness 10000) has occurred while \output is active [69] Overfull \hbox (0.13066pt too wide) in paragraph at lines 32--32 [][]\T1/aer/m/sl/20.74 XpertEdit \T1/aer/m/sc/20.74 Op-er-a-tion: \T1/aer/m/it/ 20.74 In Me-dias Res[] [70 <./figures/xpertedit-sel ect-sample-sequence.png (PNG copy)>] [71 <./figures/xpertedit-choose-p ol-chem-def.png (PNG copy)>] [72 <./figures/xpertedit-protein-main-view.png (PN G copy)>] [73] Overfull \hbox (20.56702pt too wide) in paragraph at lines 362--365 []\T1/aer/m/sl/10 Chemistry[] \T1/aer/m/n/10 Cal-cu-late the monomeric/element [74] [75 <./figures/xpertedit-file-m enu.png (PNG copy)> <./figures/xpertedit-chemistry-menu.png (PNG copy)>] Overfull \hbox (4.06323pt too wide) in paragraph at lines 435--436 [] [76 <./figures/xpertedit-3-letter-code-whole-process.png (PNG copy)>] [77] [78 <./figures/xp ertedit-sequence-editor-bad-char.png (PNG copy)>] [79 <./figures/xpertedit-find-seq uence-dlg.png>] Underfull \vbox (badness 1297) has occurred while \output is active [80 <./figu res/xpertedit-sequence-editor-sequence-import-errors-first.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 728--730 [81 <./figures/xpertedit-sequence-editor-sequence-import-errors-second.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 770--781 [82] [83] Underfull \vbox (badness 1584) has occurred while \output is active [84 <./figu res/xpertedit-modify-monomer.png>] Underfull \vbox (badness 10000) has occurred while \output is active [85 <./fig ures/xpertedit-modify-monomer-manually-defined-modif.png (PNG copy)>] [86 <./figures/xpertedit-modify-poly mer.png (PNG copy)>] [87 <./figures/xpertedit-cros s-link-monomers.png (PNG copy)>] LaTeX Warning: Float too large for page by 60.94998pt on input line 1145. 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[113] Overfull \hbox (14.57152pt too wide) in paragraph at lines 98--102 []\T1/aett/m/n/10 monomer_dictionary\T1/aer/m/n/10 : file es-tab-lish-ing the r e-la-tion-ship be-tween any monomer [114] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # between the codes of each monomer and their graphic file (p ixmap[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] [115] [116 <./figures/pol-chem-defs-directory-protein-and-saccharide.png (PNG c opy)>] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # This is the modification_dictionary file where the correspo ndences[] Overfull \hbox (21.79932pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # between the name of each modification and their graphic fil e (pixmap[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # sequence editor are made. Also, the graphical operation tha t is to[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # be performed upon chemical modification of a monomer is lis ted ('T'[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # for transparent and 'O' for opaque). See the manual for det ails.[] [117] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # where Phosphorylation is the name of the modification. T in dicates[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # process (O indicates that the visual rendering of the modif ication[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] Overfull \hbox (82.5854pt too wide) in paragraph at lines 272--283 \T1/aer/m/n/10 listed in the file for the mod-i-fi-ca-tion. 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(./protein-1-letter.xml.tex Overfull \hbox (12.51198pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 The Pro-tein Chem-istry Def-i-ni-tion Overfull \hbox (11.31934pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (278.55884pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [121] Overfull \hbox (37.51929pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] Overfull \hbox (89.91919pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]) [149] (./leu-enkephalin.mxp.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (168.51904pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 [] ) [150] (./pka_ph_pi.xml.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 Copyright 2003 2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 [] Underfull \vbox (badness 10000) has occurred while \output is active [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]) [161] (./GNU-GPL-3.0.tex Overfull \hbox (17.38269pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 GNU Gen-eral Pub-lic Li-cense Text [162] [163] [164] [165] [166] [167] [168] [169] Overfull \hbox (1.69012pt too wide) in paragraph at lines 512--516 []\T1/aer/m/n/10 Each con-trib-u-tor grants you a non-exclusive, world-wide, ro yalty-free patent [170] [171] Overfull \hbox (6.92036pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 STATED IN WRIT-ING THE COPY-RIGHT HOLD-ERS AND/OR OTHER Overfull \hbox (2.58072pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 PAR-TIES PRO-VIDE THE PRO-GRAM ``AS IS'' WITH-OUT WAR-RANTY Overfull \hbox (18.23813pt too wide) in paragraph at lines 628--638 []\T1/aer/m/n/10 IN NO EVENT UN-LESS RE-QUIRED BY AP-PLI-CA-BLE LAW OR AGREED Overfull \hbox (5.53944pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 TO IN WRIT-ING WILL ANY COPY-RIGHT HOLDER, OR ANY OTHER Overfull \hbox (9.5637pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 CLUD-ING ANY GEN-ERAL, SPE-CIAL, IN-CI-DEN-TAL OR CON-SE-QUEN- [172] Overfull \hbox (35.02808pt too wide) in paragraph at lines 679--682 \T1/aer/m/n/10 cense along with this pro-gram. If not, see http://www.gnu.org/l icenses/. ) [173] [174]) (./index.tex (./massxpert.ind [175] [176] [177])) (./massxpert.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)< /usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on massxpert.pdf (193 pages, 8835825 bytes). Transcript written on massxpert.log. cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/pdflatex -interaction=nonstopmode massxpert.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./massxpert.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. 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Overfull \hbox (8.38528pt too wide) in paragraph at lines 38--42 \T1/aer/m/n/10 fully pro-grammable (that's the \T1/aer/m/sl/10 Xpert-Calc \T1/a er/m/n/10 mod-ule also part of the \T1/aer/m/sl/10 massXpert [1] [2] Overfull \hbox (10.50308pt too wide) in paragraph at lines 168--168 [][]\T1/aer/m/sc/20.74 Program Avail-abil-ity, Tech-ni-cal- [3] Underfull \hbox (badness 10000) in paragraph at lines 196--201 Overfull \hbox (4.74527pt too wide) in paragraph at lines 212--214 []\T1/aer/m/n/10 The \T1/aer/m/sl/10 Xpert-Def \T1/aer/m/n/10 mod-ule (def-i-ni -tion of atoms and of new poly-mer chemistries); [4] [5] Overfull \hbox (19.99072pt too wide) in paragraph at lines 266--270 []\T1/aer/m/n/10 The gen-eral pol-icy for di-rect-ing ques-tions, com-ments, fe a-ture re-quests, \T1/aer/m/sl/10 massXpert Overfull \hbox (6.16531pt too wide) in paragraph at lines 266--270 \T1/aer/m/n/10 pro-gram and/or \T1/aer/m/sl/10 massXpert \T1/aer/m/n/10 doc-u-m en-ta-tion bug re-ports[] should be self-explanatory Underfull \hbox (badness 10000) in paragraph at lines 275--277 [6 <./figures/addresses.png>]) (./installation.tex Chapter 2. 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[113] Overfull \hbox (14.57152pt too wide) in paragraph at lines 98--102 []\T1/aett/m/n/10 monomer_dictionary\T1/aer/m/n/10 : file es-tab-lish-ing the r e-la-tion-ship be-tween any monomer [114] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # between the codes of each monomer and their graphic file (p ixmap[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] [115] [116 <./figures/pol-chem-defs-directory-protein-and-saccharide.png (PNG c opy)>] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # This is the modification_dictionary file where the correspo ndences[] Overfull \hbox (21.79932pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # between the name of each modification and their graphic fil e (pixmap[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # sequence editor are made. Also, the graphical operation tha t is to[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # be performed upon chemical modification of a monomer is lis ted ('T'[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # for transparent and 'O' for opaque). See the manual for det ails.[] [117] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # where Phosphorylation is the name of the modification. T in dicates[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # process (O indicates that the visual rendering of the modif ication[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] Overfull \hbox (82.5854pt too wide) in paragraph at lines 272--283 \T1/aer/m/n/10 listed in the file for the mod-i-fi-ca-tion. 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(./protein-1-letter.xml.tex Overfull \hbox (12.51198pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 The Pro-tein Chem-istry Def-i-ni-tion Overfull \hbox (11.31934pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (278.55884pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [121] Overfull \hbox (37.51929pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] Overfull \hbox (89.91919pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]) [149] (./leu-enkephalin.mxp.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (168.51904pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 [] ) [150] (./pka_ph_pi.xml.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 Copyright 2003 2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 [] Underfull \vbox (badness 10000) has occurred while \output is active [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]) [161] (./GNU-GPL-3.0.tex Overfull \hbox (17.38269pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 GNU Gen-eral Pub-lic Li-cense Text [162] [163] [164] [165] [166] [167] [168] [169] Overfull \hbox (1.69012pt too wide) in paragraph at lines 512--516 []\T1/aer/m/n/10 Each con-trib-u-tor grants you a non-exclusive, world-wide, ro yalty-free patent [170] [171] Overfull \hbox (6.92036pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 STATED IN WRIT-ING THE COPY-RIGHT HOLD-ERS AND/OR OTHER Overfull \hbox (2.58072pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 PAR-TIES PRO-VIDE THE PRO-GRAM ``AS IS'' WITH-OUT WAR-RANTY Overfull \hbox (18.23813pt too wide) in paragraph at lines 628--638 []\T1/aer/m/n/10 IN NO EVENT UN-LESS RE-QUIRED BY AP-PLI-CA-BLE LAW OR AGREED Overfull \hbox (5.53944pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 TO IN WRIT-ING WILL ANY COPY-RIGHT HOLDER, OR ANY OTHER Overfull \hbox (9.5637pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 CLUD-ING ANY GEN-ERAL, SPE-CIAL, IN-CI-DEN-TAL OR CON-SE-QUEN- [172] Overfull \hbox (35.02808pt too wide) in paragraph at lines 679--682 \T1/aer/m/n/10 cense along with this pro-gram. If not, see http://www.gnu.org/l icenses/. ) [173] [174]) (./index.tex (./massxpert.ind [175] [176] [177])) (./massxpert.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)< /usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on massxpert.pdf (193 pages, 8836258 bytes). Transcript written on massxpert.log. make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 [100%] Built target pdf make[2]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/cmake -E cmake_progress_start /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles 0 make[1]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-indep' touch build-indep-stamp dh_testdir dh_prep -a rm -f debian/massxpert.substvars rm -f debian/massxpert.*.debhelper rm -rf debian/massxpert/ rm -rf /build/buildd/massxpert-3.0.0/debian/tmp-arch mkdir -p /build/buildd/massxpert-3.0.0/debian/build-arch cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -D BUILD_PROGRAM=1 -D BUILD_DATA=0 \ -D BUILD_USERMANUAL=0 -D CMAKE_INSTALL_PREFIX=/usr ../.. -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found. -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found. -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found. -- Found Qt4: /usr/bin/qmake (found suitable version "4.7.3", required is "4.4.0") -- QTVERSION:4.7.3 ~~~~~~~~~~~~~~~~~~~~~~~~ SUMMARY ~~~~~~~~~~~~~~~~~~~~~~~~ -- BUILD_PROGRAM:1 -- BUILD_DATA:0 -- BUILD_USERMANUAL:0 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-I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_calculatorRecorderDlg.cxx /build/buildd/massxpert-3.0.0/gui/calculatorRecorderDlg.hpp cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 /build/buildd/massxpert-3.0.0/lib /build/buildd/massxpert-3.0.0/debian/build-arch /build/buildd/massxpert-3.0.0/debian/build-arch/lib /build/buildd/massxpert-3.0.0/debian/build-arch/lib/CMakeFiles/masslib.dir/DependInfo.cmake --color= /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 4%] Generating moc_calculatorWnd.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_calculatorWnd.cxx /build/buildd/massxpert-3.0.0/gui/calculatorWnd.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 69 [ 5%] Generating moc_chemPadButton.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_chemPadButton.cxx /build/buildd/massxpert-3.0.0/gui/chemPadButton.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 5%] Generating moc_cleavageDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleavageDlg.cxx /build/buildd/massxpert-3.0.0/gui/cleavageDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 5%] Generating moc_cleaveOligomerTableView.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleaveOligomerTableView.cxx /build/buildd/massxpert-3.0.0/gui/cleaveOligomerTableView.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 70 [ 6%] Generating moc_cleaveOligomerTableViewMimeData.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleaveOligomerTableViewMimeData.cxx /build/buildd/massxpert-3.0.0/gui/cleaveOligomerTableViewMimeData.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 6%] Generating moc_cleaveOligomerTableViewModel.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleaveOligomerTableViewModel.cxx /build/buildd/massxpert-3.0.0/gui/cleaveOligomerTableViewModel.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 6%] Generating moc_cleaveSpecDefDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleaveSpecDefDlg.cxx /build/buildd/massxpert-3.0.0/gui/cleaveSpecDefDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 71 [ 7%] Generating moc_compositionsDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_compositionsDlg.cxx /build/buildd/massxpert-3.0.0/gui/compositionsDlg.hpp Scanning dependencies of target masslib /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 7%] make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/make -f lib/CMakeFiles/masslib.dir/build.make lib/CMakeFiles/masslib.dir/build Generating moc_compositionTreeView.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_compositionTreeView.cxx /build/buildd/massxpert-3.0.0/gui/compositionTreeView.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 7%] Generating moc_compositionTreeViewModel.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_compositionTreeViewModel.cxx /build/buildd/massxpert-3.0.0/gui/compositionTreeViewModel.hpp make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 7%] Building CXX object lib/CMakeFiles/masslib.dir/atomCount.cpp.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/lib && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/lib -I/build/buildd/massxpert-3.0.0/debian/build-arch/lib -I/build/buildd/massxpert-3.0.0/debian/build-arch -Wall -Werror -o CMakeFiles/masslib.dir/atomCount.cpp.o -c /build/buildd/massxpert-3.0.0/lib/atomCount.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 72 [ 8%] Generating moc_configurationSettingsDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_configurationSettingsDlg.cxx /build/buildd/massxpert-3.0.0/gui/configurationSettingsDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 8%] Generating moc_crossLinkerDefDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_crossLinkerDefDlg.cxx /build/buildd/massxpert-3.0.0/gui/crossLinkerDefDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 73 [ 9%] Generating moc_decimalPlacesOptionsDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_decimalPlacesOptionsDlg.cxx /build/buildd/massxpert-3.0.0/gui/decimalPlacesOptionsDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 9%] Generating moc_fragmentationDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_fragmentationDlg.cxx /build/buildd/massxpert-3.0.0/gui/fragmentationDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 9%] Generating moc_fragmentOligomerTableView.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_fragmentOligomerTableView.cxx /build/buildd/massxpert-3.0.0/gui/fragmentOligomerTableView.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 74 [ 10%] Generating moc_fragmentOligomerTableViewMimeData.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_fragmentOligomerTableViewMimeData.cxx /build/buildd/massxpert-3.0.0/gui/fragmentOligomerTableViewMimeData.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 10%] Generating moc_fragmentOligomerTableViewModel.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_fragmentOligomerTableViewModel.cxx /build/buildd/massxpert-3.0.0/gui/fragmentOligomerTableViewModel.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 10%] Generating moc_fragSpecDefDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_fragSpecDefDlg.cxx /build/buildd/massxpert-3.0.0/gui/fragSpecDefDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 75 [ 11%] Generating moc_isotopicPatternCalculationDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_isotopicPatternCalculationDlg.cxx /build/buildd/massxpert-3.0.0/gui/isotopicPatternCalculationDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 11%] Generating moc_mainWindow.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mainWindow.cxx /build/buildd/massxpert-3.0.0/gui/mainWindow.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 11%] Generating moc_massSearchDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_massSearchDlg.cxx /build/buildd/massxpert-3.0.0/gui/massSearchDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 76 [ 12%] Generating moc_massSearchOligomerTableView.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_massSearchOligomerTableView.cxx /build/buildd/massxpert-3.0.0/gui/massSearchOligomerTableView.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 12%] Generating moc_massSearchOligomerTableViewMimeData.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_massSearchOligomerTableViewMimeData.cxx /build/buildd/massxpert-3.0.0/gui/massSearchOligomerTableViewMimeData.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 12%] Generating moc_massSearchOligomerTableViewModel.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_massSearchOligomerTableViewModel.cxx /build/buildd/massxpert-3.0.0/gui/massSearchOligomerTableViewModel.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 77 [ 13%] Generating moc_modifDefDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_modifDefDlg.cxx /build/buildd/massxpert-3.0.0/gui/modifDefDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 13%] Generating moc_monomerCodeEvaluator.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_monomerCodeEvaluator.cxx /build/buildd/massxpert-3.0.0/gui/monomerCodeEvaluator.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 13%] Generating moc_monomerCrossLinkDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_monomerCrossLinkDlg.cxx /build/buildd/massxpert-3.0.0/gui/monomerCrossLinkDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 78 [ 14%] Generating moc_monomerDefDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_monomerDefDlg.cxx /build/buildd/massxpert-3.0.0/gui/monomerDefDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 14%] Generating moc_monomerModificationDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_monomerModificationDlg.cxx /build/buildd/massxpert-3.0.0/gui/monomerModificationDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 14%] Generating moc_mzCalculationDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzCalculationDlg.cxx /build/buildd/massxpert-3.0.0/gui/mzCalculationDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 79 [ 15%] Generating moc_mzCalculationTreeView.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzCalculationTreeView.cxx /build/buildd/massxpert-3.0.0/gui/mzCalculationTreeView.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 15%] Generating moc_mzCalculationTreeViewModel.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzCalculationTreeViewModel.cxx /build/buildd/massxpert-3.0.0/gui/mzCalculationTreeViewModel.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 15%] Generating moc_mzLabInputOligomerTableView.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabInputOligomerTableView.cxx /build/buildd/massxpert-3.0.0/gui/mzLabInputOligomerTableView.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 80 [ 16%] Generating moc_mzLabInputOligomerTableViewDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabInputOligomerTableViewDlg.cxx /build/buildd/massxpert-3.0.0/gui/mzLabInputOligomerTableViewDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 16%] Generating moc_mzLabInputOligomerTableViewModel.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabInputOligomerTableViewModel.cxx /build/buildd/massxpert-3.0.0/gui/mzLabInputOligomerTableViewModel.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 16%] Generating moc_mzLabOutputOligomerTableView.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabOutputOligomerTableView.cxx /build/buildd/massxpert-3.0.0/gui/mzLabOutputOligomerTableView.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 81 [ 17%] Generating moc_mzLabOutputOligomerTableViewDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabOutputOligomerTableViewDlg.cxx /build/buildd/massxpert-3.0.0/gui/mzLabOutputOligomerTableViewDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 17%] Generating moc_mzLabOutputOligomerTableViewModel.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabOutputOligomerTableViewModel.cxx /build/buildd/massxpert-3.0.0/gui/mzLabOutputOligomerTableViewModel.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 82 [ 18%] Generating moc_mzLabWnd.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabWnd.cxx /build/buildd/massxpert-3.0.0/gui/mzLabWnd.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 18%] Generating moc_pkaPhPiDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_pkaPhPiDlg.cxx /build/buildd/massxpert-3.0.0/gui/pkaPhPiDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 18%] Generating moc_polChemDefWnd.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_polChemDefWnd.cxx /build/buildd/massxpert-3.0.0/gui/polChemDefWnd.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 83 [ 19%] Generating moc_polymerModificationDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_polymerModificationDlg.cxx /build/buildd/massxpert-3.0.0/gui/polymerModificationDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 19%] Generating moc_sequenceEditorFindDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_sequenceEditorFindDlg.cxx /build/buildd/massxpert-3.0.0/gui/sequenceEditorFindDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 19%] Generating moc_sequenceEditorGraphicsView.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_sequenceEditorGraphicsView.cxx /build/buildd/massxpert-3.0.0/gui/sequenceEditorGraphicsView.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 19%] Building CXX object lib/CMakeFiles/masslib.dir/atom.cpp.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/lib && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/lib -I/build/buildd/massxpert-3.0.0/debian/build-arch/lib -I/build/buildd/massxpert-3.0.0/debian/build-arch -Wall -Werror -o CMakeFiles/masslib.dir/atom.cpp.o -c /build/buildd/massxpert-3.0.0/lib/atom.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 84 [ 20%] Generating moc_sequenceEditorWnd.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_sequenceEditorWnd.cxx /build/buildd/massxpert-3.0.0/gui/sequenceEditorWnd.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 20%] Generating moc_sequenceImportDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_sequenceImportDlg.cxx /build/buildd/massxpert-3.0.0/gui/sequenceImportDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 20%] Generating moc_sequencePurificationDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_sequencePurificationDlg.cxx /build/buildd/massxpert-3.0.0/gui/sequencePurificationDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 85 [ 21%] Generating ui_aboutDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_aboutDlg.h /build/buildd/massxpert-3.0.0/gui/ui/aboutDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 21%] Generating ui_atomDefDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_atomDefDlg.h /build/buildd/massxpert-3.0.0/gui/ui/atomDefDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 21%] Generating ui_calculatorChemPadDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_calculatorChemPadDlg.h /build/buildd/massxpert-3.0.0/gui/ui/calculatorChemPadDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 86 [ 22%] Generating ui_calculatorRecorderDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_calculatorRecorderDlg.h /build/buildd/massxpert-3.0.0/gui/ui/calculatorRecorderDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 22%] Generating ui_calculatorWnd.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_calculatorWnd.h /build/buildd/massxpert-3.0.0/gui/ui/calculatorWnd.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 22%] Generating ui_cleavageDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_cleavageDlg.h /build/buildd/massxpert-3.0.0/gui/ui/cleavageDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 87 [ 23%] Generating ui_cleaveSpecDefDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_cleaveSpecDefDlg.h /build/buildd/massxpert-3.0.0/gui/ui/cleaveSpecDefDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 23%] Generating ui_compositionsDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_compositionsDlg.h /build/buildd/massxpert-3.0.0/gui/ui/compositionsDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 23%] Generating ui_configurationSettingsDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_configurationSettingsDlg.h /build/buildd/massxpert-3.0.0/gui/ui/configurationSettingsDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 88 [ 24%] Generating ui_crossLinkerDefDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_crossLinkerDefDlg.h /build/buildd/massxpert-3.0.0/gui/ui/crossLinkerDefDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 24%] Generating ui_fragmentationDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_fragmentationDlg.h /build/buildd/massxpert-3.0.0/gui/ui/fragmentationDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 24%] Generating ui_fragSpecDefDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_fragSpecDefDlg.h /build/buildd/massxpert-3.0.0/gui/ui/fragSpecDefDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 89 [ 25%] Generating ui_decimalPlacesOptionsDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_decimalPlacesOptionsDlg.h /build/buildd/massxpert-3.0.0/gui/ui/decimalPlacesOptionsDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 25%] Generating ui_isotopicPatternCalculationDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_isotopicPatternCalculationDlg.h /build/buildd/massxpert-3.0.0/gui/ui/isotopicPatternCalculationDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 25%] Generating ui_massSearchDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_massSearchDlg.h /build/buildd/massxpert-3.0.0/gui/ui/massSearchDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 90 [ 26%] Generating ui_modifDefDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_modifDefDlg.h /build/buildd/massxpert-3.0.0/gui/ui/modifDefDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 26%] Generating ui_monomerCrossLinkDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_monomerCrossLinkDlg.h /build/buildd/massxpert-3.0.0/gui/ui/monomerCrossLinkDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 91 [ 27%] Generating ui_monomerDefDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_monomerDefDlg.h /build/buildd/massxpert-3.0.0/gui/ui/monomerDefDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 27%] Generating ui_monomerModificationDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/gui/ui_monomerModificationDlg.h 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/build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/sequenceEditorWnd.cpp.o -c /build/buildd/massxpert-3.0.0/gui/sequenceEditorWnd.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 47 [ 74%] Building CXX object gui/CMakeFiles/massxpert.dir/sequenceImportDlg.cpp.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/sequenceImportDlg.cpp.o -c /build/buildd/massxpert-3.0.0/gui/sequenceImportDlg.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 74%] Building CXX object gui/CMakeFiles/massxpert.dir/sequencePurificationDlg.cpp.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o 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/usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_calculatorRecorderDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_calculatorRecorderDlg.cxx /usr/bin/make -f plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/build.make plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/depend make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 2 [ 77%] Generating moc_massListSorterPlugin.cxx cd 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/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../../lib -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin/moc_massListSorterPluginDlg.cxx /build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/massListSorterPluginDlg.hpp cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 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77%] /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 50 [ 78%] Building CXX object plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/massListSorterPluginDlg.cpp.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin && /usr/bin/c++ -DmassListSorterPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../../lib -Wall -Werror -o CMakeFiles/massListSorterPlugin.dir/massListSorterPluginDlg.cpp.o -c /build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/massListSorterPluginDlg.cpp Building CXX object gui/CMakeFiles/massxpert.dir/moc_calculatorWnd.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_calculatorWnd.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_calculatorWnd.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 78%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_chemPadButton.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_chemPadButton.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_chemPadButton.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 78%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_cleavageDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_cleavageDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleavageDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 1 [ 79%] Building CXX object plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/moc_massListSorterPluginDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin && /usr/bin/c++ -DmassListSorterPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../../lib -Wall -Werror -o CMakeFiles/massListSorterPlugin.dir/moc_massListSorterPluginDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin/moc_massListSorterPluginDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 79%] Building CXX object plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/moc_massListSorterPlugin.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin && /usr/bin/c++ -DmassListSorterPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin/../../lib -Wall -Werror -o CMakeFiles/massListSorterPlugin.dir/moc_massListSorterPlugin.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin/moc_massListSorterPlugin.cxx Linking CXX shared module libmassListSorterPlugin.so cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin && /usr/bin/cmake -E cmake_link_script CMakeFiles/massListSorterPlugin.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -O2 -Wl,-Bsymbolic-functions -shared -o libmassListSorterPlugin.so CMakeFiles/massListSorterPlugin.dir/massListSorterPlugin.cpp.o CMakeFiles/massListSorterPlugin.dir/massListSorterPluginDlg.cpp.o CMakeFiles/massListSorterPlugin.dir/moc_massListSorterPluginDlg.cxx.o CMakeFiles/massListSorterPlugin.dir/moc_massListSorterPlugin.cxx.o -lQtSvg -lQtGui -lQtXml -lQtCore -lQtGui -lQtXml -lQtCore make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 1 2 [ 79%] Built target massListSorterPlugin /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 51 [ 80%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_cleaveOligomerTableView.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_cleaveOligomerTableView.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleaveOligomerTableView.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 80%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_cleaveOligomerTableViewMimeData.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_cleaveOligomerTableViewMimeData.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleaveOligomerTableViewMimeData.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 80%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_cleaveOligomerTableViewModel.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_cleaveOligomerTableViewModel.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleaveOligomerTableViewModel.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 52 [ 81%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_cleaveSpecDefDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_cleaveSpecDefDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_cleaveSpecDefDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 81%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_compositionsDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_compositionsDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_compositionsDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 81%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_compositionTreeView.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_compositionTreeView.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_compositionTreeView.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 53 [ 82%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_compositionTreeViewModel.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_compositionTreeViewModel.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_compositionTreeViewModel.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 82%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_configurationSettingsDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_configurationSettingsDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_configurationSettingsDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 82%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_crossLinkerDefDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_crossLinkerDefDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_crossLinkerDefDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 54 [ 83%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_decimalPlacesOptionsDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_decimalPlacesOptionsDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_decimalPlacesOptionsDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 83%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_fragmentationDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_fragmentationDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_fragmentationDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 55 [ 84%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_fragmentOligomerTableView.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_fragmentOligomerTableView.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_fragmentOligomerTableView.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 84%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_fragmentOligomerTableViewMimeData.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_fragmentOligomerTableViewMimeData.cxx.o -c 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cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 91%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_mzLabOutputOligomerTableViewModel.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_mzLabOutputOligomerTableViewModel.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabOutputOligomerTableViewModel.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 63 [ 92%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_mzLabWnd.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_mzLabWnd.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_mzLabWnd.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 92%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_pkaPhPiDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_pkaPhPiDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_pkaPhPiDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 64 [ 93%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_polChemDefWnd.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o 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-I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o CMakeFiles/massxpert.dir/moc_sequenceEditorWnd.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/gui/moc_sequenceEditorWnd.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 94%] Building CXX object gui/CMakeFiles/massxpert.dir/moc_sequenceImportDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/c++ -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -O2 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch/gui -I/build/buildd/massxpert-3.0.0/debian/build-arch -I/build/buildd/massxpert-3.0.0/gui/../lib -Wall -Werror -o 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/build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 100 [ 96%] Generating moc_seqToolsPlugin.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../lib -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin/moc_seqToolsPlugin.cxx /build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/seqToolsPlugin.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 96%] Generating moc_seqToolsPluginDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../lib -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin/moc_seqToolsPluginDlg.cxx /build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/seqToolsPluginDlg.hpp cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 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-DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../lib -Wall -Werror -o CMakeFiles/seqToolsPlugin.dir/seqToolsPlugin.cpp.o -c /build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/seqToolsPlugin.cpp Linking CXX executable massxpert cd /build/buildd/massxpert-3.0.0/debian/build-arch/gui && /usr/bin/cmake -E cmake_link_script CMakeFiles/massxpert.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -O2 -Wl,-Bsymbolic-functions CMakeFiles/massxpert.dir/aboutDlg.cpp.o 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CMakeFiles/massxpert.dir/monomerCodeEvaluator.cpp.o CMakeFiles/massxpert.dir/monomerCrossLinkDlg.cpp.o CMakeFiles/massxpert.dir/monomerDefDlg.cpp.o CMakeFiles/massxpert.dir/monomerModificationDlg.cpp.o CMakeFiles/massxpert.dir/mzCalculationDlg.cpp.o CMakeFiles/massxpert.dir/mzCalculationTreeView.cpp.o CMakeFiles/massxpert.dir/mzCalculationTreeViewItem.cpp.o CMakeFiles/massxpert.dir/mzCalculationTreeViewModel.cpp.o CMakeFiles/massxpert.dir/mzCalculationTreeViewSortProxyModel.cpp.o CMakeFiles/massxpert.dir/mzLabInputOligomerTableView.cpp.o CMakeFiles/massxpert.dir/mzLabInputOligomerTableViewDlg.cpp.o CMakeFiles/massxpert.dir/mzLabInputOligomerTableViewModel.cpp.o CMakeFiles/massxpert.dir/mzLabInputOligomerTableViewSortProxyModel.cpp.o CMakeFiles/massxpert.dir/mzLabOutputOligomerTableView.cpp.o CMakeFiles/massxpert.dir/mzLabOutputOligomerTableViewDlg.cpp.o CMakeFiles/massxpert.dir/mzLabOutputOligomerTableViewModel.cpp.o CMakeFiles/massxpert.dir/mzLabOutputOligomerTableViewSortProxyModel.cpp.o CMakeFiles/massxpert.dir/mzLabWnd.cpp.o CMakeFiles/massxpert.dir/pkaPhPiDlg.cpp.o CMakeFiles/massxpert.dir/polChemDefWnd.cpp.o CMakeFiles/massxpert.dir/polymerModificationDlg.cpp.o CMakeFiles/massxpert.dir/regionSelection.cpp.o CMakeFiles/massxpert.dir/sequenceEditorFindDlg.cpp.o CMakeFiles/massxpert.dir/sequenceEditorGraphicsView.cpp.o CMakeFiles/massxpert.dir/sequenceEditorGraphicsViewKeyboardHandling.cpp.o CMakeFiles/massxpert.dir/sequenceEditorGraphicsViewKeySequenceHandling.cpp.o CMakeFiles/massxpert.dir/sequenceEditorWnd.cpp.o CMakeFiles/massxpert.dir/sequenceImportDlg.cpp.o CMakeFiles/massxpert.dir/sequencePurificationDlg.cpp.o CMakeFiles/massxpert.dir/sequenceSelection.cpp.o CMakeFiles/massxpert.dir/moc_aboutDlg.cxx.o CMakeFiles/massxpert.dir/moc_application.cxx.o CMakeFiles/massxpert.dir/moc_atomDefDlg.cxx.o CMakeFiles/massxpert.dir/moc_calculatorChemPadDlg.cxx.o CMakeFiles/massxpert.dir/moc_calculatorChemPadGroupBox.cxx.o CMakeFiles/massxpert.dir/moc_calculatorRecorderDlg.cxx.o CMakeFiles/massxpert.dir/moc_calculatorWnd.cxx.o CMakeFiles/massxpert.dir/moc_chemPadButton.cxx.o CMakeFiles/massxpert.dir/moc_cleavageDlg.cxx.o CMakeFiles/massxpert.dir/moc_cleaveOligomerTableView.cxx.o CMakeFiles/massxpert.dir/moc_cleaveOligomerTableViewMimeData.cxx.o CMakeFiles/massxpert.dir/moc_cleaveOligomerTableViewModel.cxx.o CMakeFiles/massxpert.dir/moc_cleaveSpecDefDlg.cxx.o CMakeFiles/massxpert.dir/moc_compositionsDlg.cxx.o CMakeFiles/massxpert.dir/moc_compositionTreeView.cxx.o CMakeFiles/massxpert.dir/moc_compositionTreeViewModel.cxx.o CMakeFiles/massxpert.dir/moc_configurationSettingsDlg.cxx.o CMakeFiles/massxpert.dir/moc_crossLinkerDefDlg.cxx.o CMakeFiles/massxpert.dir/moc_decimalPlacesOptionsDlg.cxx.o CMakeFiles/massxpert.dir/moc_fragmentationDlg.cxx.o CMakeFiles/massxpert.dir/moc_fragmentOligomerTableView.cxx.o CMakeFiles/massxpert.dir/moc_fragmentOligomerTableViewMimeData.cxx.o CMakeFiles/massxpert.dir/moc_fragmentOligomerTableViewModel.cxx.o CMakeFiles/massxpert.dir/moc_fragSpecDefDlg.cxx.o CMakeFiles/massxpert.dir/moc_isotopicPatternCalculationDlg.cxx.o CMakeFiles/massxpert.dir/moc_mainWindow.cxx.o CMakeFiles/massxpert.dir/moc_massSearchDlg.cxx.o CMakeFiles/massxpert.dir/moc_massSearchOligomerTableView.cxx.o CMakeFiles/massxpert.dir/moc_massSearchOligomerTableViewMimeData.cxx.o CMakeFiles/massxpert.dir/moc_massSearchOligomerTableViewModel.cxx.o CMakeFiles/massxpert.dir/moc_modifDefDlg.cxx.o CMakeFiles/massxpert.dir/moc_monomerCodeEvaluator.cxx.o CMakeFiles/massxpert.dir/moc_monomerCrossLinkDlg.cxx.o CMakeFiles/massxpert.dir/moc_monomerDefDlg.cxx.o CMakeFiles/massxpert.dir/moc_monomerModificationDlg.cxx.o CMakeFiles/massxpert.dir/moc_mzCalculationDlg.cxx.o CMakeFiles/massxpert.dir/moc_mzCalculationTreeView.cxx.o CMakeFiles/massxpert.dir/moc_mzCalculationTreeViewModel.cxx.o CMakeFiles/massxpert.dir/moc_mzLabInputOligomerTableView.cxx.o CMakeFiles/massxpert.dir/moc_mzLabInputOligomerTableViewDlg.cxx.o CMakeFiles/massxpert.dir/moc_mzLabInputOligomerTableViewModel.cxx.o CMakeFiles/massxpert.dir/moc_mzLabOutputOligomerTableView.cxx.o CMakeFiles/massxpert.dir/moc_mzLabOutputOligomerTableViewDlg.cxx.o CMakeFiles/massxpert.dir/moc_mzLabOutputOligomerTableViewModel.cxx.o CMakeFiles/massxpert.dir/moc_mzLabWnd.cxx.o CMakeFiles/massxpert.dir/moc_pkaPhPiDlg.cxx.o CMakeFiles/massxpert.dir/moc_polChemDefWnd.cxx.o CMakeFiles/massxpert.dir/moc_polymerModificationDlg.cxx.o CMakeFiles/massxpert.dir/moc_sequenceEditorFindDlg.cxx.o CMakeFiles/massxpert.dir/moc_sequenceEditorGraphicsView.cxx.o CMakeFiles/massxpert.dir/moc_sequenceEditorWnd.cxx.o CMakeFiles/massxpert.dir/moc_sequenceImportDlg.cxx.o CMakeFiles/massxpert.dir/moc_sequencePurificationDlg.cxx.o CMakeFiles/massxpert.dir/qrc_application.cxx.o -o massxpert -rdynamic -Wl,-whole-archive ../lib/libmasslib.a -Wl,-no-whole-archive -lQtSvg -lQtGui -lQtXml -lQtCore -lQtXml -lQtSvg -lQtGui -lQtCore /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 97%] Building CXX object plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/seqToolsPluginDlg.cpp.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin && /usr/bin/c++ -DseqToolsPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../lib -Wall -Werror -o CMakeFiles/seqToolsPlugin.dir/seqToolsPluginDlg.cpp.o -c /build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/seqToolsPluginDlg.cpp make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 [ 97%] Built target massxpert /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 97%] Building CXX object plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/moc_seqToolsPluginDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin && /usr/bin/c++ -DseqToolsPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../lib -Wall -Werror -o CMakeFiles/seqToolsPlugin.dir/moc_seqToolsPluginDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin/moc_seqToolsPluginDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 99 [ 98%] Building CXX object plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/moc_seqToolsPlugin.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin && /usr/bin/c++ -DseqToolsPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin/../../lib -Wall -Werror -o CMakeFiles/seqToolsPlugin.dir/moc_seqToolsPlugin.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin/moc_seqToolsPlugin.cxx /usr/bin/make -f plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/build.make plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/depend make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 98%] Generating ui_NumeralsLocaleConverterPluginDlg.h cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin && /usr/bin/uic-qt4 -o /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin/ui_NumeralsLocaleConverterPluginDlg.h /build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/ui/NumeralsLocaleConverterPluginDlg.ui /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 97 [ 99%] Generating moc_numeralsLocaleConverterPluginDlg.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../lib -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin/moc_numeralsLocaleConverterPluginDlg.cxx /build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/numeralsLocaleConverterPluginDlg.hpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 99%] Generating moc_numeralsLocaleConverterPlugin.cxx cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin && /usr/bin/moc-qt4 -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../lib -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -o /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin/moc_numeralsLocaleConverterPlugin.cxx /build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/numeralsLocaleConverterPlugin.hpp cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 /build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin /build/buildd/massxpert-3.0.0/debian/build-arch /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/DependInfo.cmake --color= Linking CXX shared module libseqToolsPlugin.so cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqToolsPlugin.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -O2 -Wl,-Bsymbolic-functions -shared -o libseqToolsPlugin.so CMakeFiles/seqToolsPlugin.dir/seqToolsPlugin.cpp.o CMakeFiles/seqToolsPlugin.dir/seqToolsPluginDlg.cpp.o CMakeFiles/seqToolsPlugin.dir/moc_seqToolsPluginDlg.cxx.o CMakeFiles/seqToolsPlugin.dir/moc_seqToolsPlugin.cxx.o -lQtSvg -lQtGui -lQtXml -lQtCore -lQtGui -lQtXml -lQtCore Scanning dependencies of target numeralsLocaleConverterPlugin make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/make -f plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/build.make plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/build make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [ 99%] Building CXX object plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/numeralsLocaleConverterPlugin.cpp.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin && /usr/bin/c++ -DnumeralsLocaleConverterPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../lib -Wall -Werror -o CMakeFiles/numeralsLocaleConverterPlugin.dir/numeralsLocaleConverterPlugin.cpp.o -c /build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/numeralsLocaleConverterPlugin.cpp make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 98 99 100 [ 99%] Built target seqToolsPlugin /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 96 [100%] Building CXX object plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/numeralsLocaleConverterPluginDlg.cpp.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin && /usr/bin/c++ -DnumeralsLocaleConverterPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../lib -Wall -Werror -o CMakeFiles/numeralsLocaleConverterPlugin.dir/numeralsLocaleConverterPluginDlg.cpp.o -c /build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/numeralsLocaleConverterPluginDlg.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [100%] Building CXX object plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/moc_numeralsLocaleConverterPluginDlg.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin && /usr/bin/c++ -DnumeralsLocaleConverterPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../lib -Wall -Werror -o CMakeFiles/numeralsLocaleConverterPlugin.dir/moc_numeralsLocaleConverterPluginDlg.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin/moc_numeralsLocaleConverterPluginDlg.cxx /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles [100%] Building CXX object plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/moc_numeralsLocaleConverterPlugin.cxx.o cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin && /usr/bin/c++ -DnumeralsLocaleConverterPlugin_EXPORTS -DQT_SVG_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_NO_DEBUG -DQT_SHARED -g -O2 -O2 -fPIC -I/usr/include/qt4 -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtCore -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../.. -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../gui -I/build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin/../../lib -Wall -Werror -o CMakeFiles/numeralsLocaleConverterPlugin.dir/moc_numeralsLocaleConverterPlugin.cxx.o -c /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin/moc_numeralsLocaleConverterPlugin.cxx Linking CXX shared module libnumeralsLocaleConverterPlugin.so cd /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin && /usr/bin/cmake -E cmake_link_script 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`/build/buildd/massxpert-3.0.0/debian/build-arch' touch build-arch-stamp /usr/bin/fakeroot debian/rules binary "---------------------------------------" NUMJOBS: 2 MAKEFLAGS: -j2 DEB_BUILD_OPTIONS: parallel=2 "---------------------------------------" dh_testdir dh_testroot dh_installdirs -i install -d debian/massxpert-data install -d debian/massxpert-data/usr/share install -d debian/massxpert-doc install -d debian/massxpert-doc/usr/share/doc mkdir -p /build/buildd/massxpert-3.0.0/debian/tmp-indep /usr/bin/make -C /build/buildd/massxpert-3.0.0/debian/build-indep install DESTDIR=/build/buildd/massxpert-3.0.0/debian/tmp-indep make[1]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/cmake -H/build/buildd/massxpert-3.0.0 -B/build/buildd/massxpert-3.0.0/debian/build-indep --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles 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`/build/buildd/massxpert-3.0.0/debian/build-indep' cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/pdflatex -interaction=nonstopmode massxpert.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./massxpert.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. 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Overfull \hbox (8.38528pt too wide) in paragraph at lines 38--42 \T1/aer/m/n/10 fully pro-grammable (that's the \T1/aer/m/sl/10 Xpert-Calc \T1/a er/m/n/10 mod-ule also part of the \T1/aer/m/sl/10 massXpert [1] [2] Overfull \hbox (10.50308pt too wide) in paragraph at lines 168--168 [][]\T1/aer/m/sc/20.74 Program Avail-abil-ity, Tech-ni-cal- [3] Underfull \hbox (badness 10000) in paragraph at lines 196--201 Overfull \hbox (4.74527pt too wide) in paragraph at lines 212--214 []\T1/aer/m/n/10 The \T1/aer/m/sl/10 Xpert-Def \T1/aer/m/n/10 mod-ule (def-i-ni -tion of atoms and of new poly-mer chemistries); [4] [5] Overfull \hbox (19.99072pt too wide) in paragraph at lines 266--270 []\T1/aer/m/n/10 The gen-eral pol-icy for di-rect-ing ques-tions, com-ments, fe a-ture re-quests, \T1/aer/m/sl/10 massXpert Overfull \hbox (6.16531pt too wide) in paragraph at lines 266--270 \T1/aer/m/n/10 pro-gram and/or \T1/aer/m/sl/10 massXpert \T1/aer/m/n/10 doc-u-m en-ta-tion bug re-ports[] should be self-explanatory Underfull \hbox (badness 10000) in paragraph at lines 275--277 [6 <./figures/addresses.png>]) (./installation.tex Chapter 2. 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[15] Underfull \vbox (badness 6876) has occurred while \output is active [16] [17 <./figures/peptbond-formation.png (PNG copy)>] [18 <./figures/prot-polymer.png (PNG copy)>] [19 <./figures/nucacbond-formation.png (PNG cop y)>] [20 <./figures/nucac-polymer.png (PNG copy)>] [21 <./figures/sacchbond-formation.png (PNG cop y)> <./figures/sacch-polymer.png (PNG copy)>] [22] [23] [24 <./figures/prot-cleavage.png (PNG copy )>] [25] [26] [27 <./figures/prot-fragmentation.png (PNG copy)>] Overfull \hbox (1.18713pt too wide) in paragraph at lines 735--736 \T1/aer/bx/it/10 b \T1/aer/bx/n/10 frag-ment se-ries[] \T1/aer/m/n/10 Sim-i-la rly, the mass cal-cu-la-tion is math-e-mat-i-cally ex-pressed [28] Overfull \hbox (9.24484pt too wide) in paragraph at lines 761--772 \T1/aer/m/n/10 sense that they do not hold nei-ther of the two pre-cur-sor poly -mer's ends. \T1/aer/m/sl/10 massXpert [29] [30 <./figures/dna-fragmentation.png ( PNG copy)>] [31] Overfull \hbox (2.33554pt too wide) in paragraph at lines 893--895 \T1/aer/m/n/10 To sum up all what we have seen so far with poly-mer chain dis-r upt-ing chemistries: Overfull \hbox (7.70595pt too wide) in paragraph at lines 914--917 []\T1/aer/m/n/10 Fragments are never ion-ized au-to-mat-i-cally; ion-iza-tion ( gain/loss of a charged [32]) (./basics-massspec.tex Chapter 4. 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In na-ture, biopoly- [48 <./figures/xpertdef-monomers-mass- differences.png>] [49 <./figures/xpertdef-modifications.p ng (PNG copy)>] [50 <./figures/xpertdef-crosslinkers.png ( PNG copy)>] [51 <./figures/xpertdef-cleavages.png>] Overfull \hbox (0.41591pt too wide) in paragraph at lines 547--562 \T1/aer/m/n/10 cleav-age spec-i-fi-ca-tion for ``CyanogenBromide''---that the o ligomers re-sult-ing from [52] Underfull \vbox (badness 10000) has occurred while \output is active [53 <./fig ures/xpertdef-fragmentations-simplest.png>] Underfull \hbox (badness 10000) in paragraph at lines 635--639 [54] [55 <./f igures/xpertdef-fragmentations-special-dna-a-base-case.png>] [56 <./figures/xpertde f-fragmentations-frag-rules.png>] Underfull \hbox (badness 10000) in paragraph at lines 747--758 Underfull \hbox (badness 10000) in paragraph at lines 782--790 [57] [58]) (./xpertcalc.tex Chapter 7. 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Underfull \vbox (badness 10000) has occurred while \output is active [69] Overfull \hbox (0.13066pt too wide) in paragraph at lines 32--32 [][]\T1/aer/m/sl/20.74 XpertEdit \T1/aer/m/sc/20.74 Op-er-a-tion: \T1/aer/m/it/ 20.74 In Me-dias Res[] [70 <./figures/xpertedit-sel ect-sample-sequence.png (PNG copy)>] [71 <./figures/xpertedit-choose-p ol-chem-def.png (PNG copy)>] [72 <./figures/xpertedit-protein-main-view.png (PN G copy)>] [73] Overfull \hbox (20.56702pt too wide) in paragraph at lines 362--365 []\T1/aer/m/sl/10 Chemistry[] \T1/aer/m/n/10 Cal-cu-late the monomeric/element [74] [75 <./figures/xpertedit-file-m enu.png (PNG copy)> <./figures/xpertedit-chemistry-menu.png (PNG copy)>] Overfull \hbox (4.06323pt too wide) in paragraph at lines 435--436 [] [76 <./figures/xpertedit-3-letter-code-whole-process.png (PNG copy)>] [77] [78 <./figures/xp ertedit-sequence-editor-bad-char.png (PNG copy)>] [79 <./figures/xpertedit-find-seq uence-dlg.png>] Underfull \vbox (badness 1297) has occurred while \output is active [80 <./figu res/xpertedit-sequence-editor-sequence-import-errors-first.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 728--730 [81 <./figures/xpertedit-sequence-editor-sequence-import-errors-second.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 770--781 [82] [83] Underfull \vbox (badness 1584) has occurred while \output is active [84 <./figu res/xpertedit-modify-monomer.png>] Underfull \vbox (badness 10000) has occurred while \output is active [85 <./fig ures/xpertedit-modify-monomer-manually-defined-modif.png (PNG copy)>] [86 <./figures/xpertedit-modify-poly mer.png (PNG copy)>] [87 <./figures/xpertedit-cros s-link-monomers.png (PNG copy)>] LaTeX Warning: Float too large for page by 60.94998pt on input line 1145. 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[113] Overfull \hbox (14.57152pt too wide) in paragraph at lines 98--102 []\T1/aett/m/n/10 monomer_dictionary\T1/aer/m/n/10 : file es-tab-lish-ing the r e-la-tion-ship be-tween any monomer [114] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # between the codes of each monomer and their graphic file (p ixmap[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] [115] [116 <./figures/pol-chem-defs-directory-protein-and-saccharide.png (PNG c opy)>] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # This is the modification_dictionary file where the correspo ndences[] Overfull \hbox (21.79932pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # between the name of each modification and their graphic fil e (pixmap[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # sequence editor are made. Also, the graphical operation tha t is to[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # be performed upon chemical modification of a monomer is lis ted ('T'[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # for transparent and 'O' for opaque). See the manual for det ails.[] [117] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # where Phosphorylation is the name of the modification. T in dicates[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # process (O indicates that the visual rendering of the modif ication[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] Overfull \hbox (82.5854pt too wide) in paragraph at lines 272--283 \T1/aer/m/n/10 listed in the file for the mod-i-fi-ca-tion. 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(./protein-1-letter.xml.tex Overfull \hbox (12.51198pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 The Pro-tein Chem-istry Def-i-ni-tion Overfull \hbox (11.31934pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (278.55884pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [121] Overfull \hbox (37.51929pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] Overfull \hbox (89.91919pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]) [149] (./leu-enkephalin.mxp.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (168.51904pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 [] ) [150] (./pka_ph_pi.xml.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 Copyright 2003 2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 [] Underfull \vbox (badness 10000) has occurred while \output is active [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]) [161] (./GNU-GPL-3.0.tex Overfull \hbox (17.38269pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 GNU Gen-eral Pub-lic Li-cense Text [162] [163] [164] [165] [166] [167] [168] [169] Overfull \hbox (1.69012pt too wide) in paragraph at lines 512--516 []\T1/aer/m/n/10 Each con-trib-u-tor grants you a non-exclusive, world-wide, ro yalty-free patent [170] [171] Overfull \hbox (6.92036pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 STATED IN WRIT-ING THE COPY-RIGHT HOLD-ERS AND/OR OTHER Overfull \hbox (2.58072pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 PAR-TIES PRO-VIDE THE PRO-GRAM ``AS IS'' WITH-OUT WAR-RANTY Overfull \hbox (18.23813pt too wide) in paragraph at lines 628--638 []\T1/aer/m/n/10 IN NO EVENT UN-LESS RE-QUIRED BY AP-PLI-CA-BLE LAW OR AGREED Overfull \hbox (5.53944pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 TO IN WRIT-ING WILL ANY COPY-RIGHT HOLDER, OR ANY OTHER Overfull \hbox (9.5637pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 CLUD-ING ANY GEN-ERAL, SPE-CIAL, IN-CI-DEN-TAL OR CON-SE-QUEN- [172] Overfull \hbox (35.02808pt too wide) in paragraph at lines 679--682 \T1/aer/m/n/10 cense along with this pro-gram. If not, see http://www.gnu.org/l icenses/. ) [173] [174]) (./index.tex (./massxpert.ind [175] [176] [177])) (./massxpert.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)< /usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on massxpert.pdf (193 pages, 8836258 bytes). Transcript written on massxpert.log. cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/pdflatex -interaction=nonstopmode massxpert.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./massxpert.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. 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Overfull \hbox (8.38528pt too wide) in paragraph at lines 38--42 \T1/aer/m/n/10 fully pro-grammable (that's the \T1/aer/m/sl/10 Xpert-Calc \T1/a er/m/n/10 mod-ule also part of the \T1/aer/m/sl/10 massXpert [1] [2] Overfull \hbox (10.50308pt too wide) in paragraph at lines 168--168 [][]\T1/aer/m/sc/20.74 Program Avail-abil-ity, Tech-ni-cal- [3] Underfull \hbox (badness 10000) in paragraph at lines 196--201 Overfull \hbox (4.74527pt too wide) in paragraph at lines 212--214 []\T1/aer/m/n/10 The \T1/aer/m/sl/10 Xpert-Def \T1/aer/m/n/10 mod-ule (def-i-ni -tion of atoms and of new poly-mer chemistries); [4] [5] Overfull \hbox (19.99072pt too wide) in paragraph at lines 266--270 []\T1/aer/m/n/10 The gen-eral pol-icy for di-rect-ing ques-tions, com-ments, fe a-ture re-quests, \T1/aer/m/sl/10 massXpert Overfull \hbox (6.16531pt too wide) in paragraph at lines 266--270 \T1/aer/m/n/10 pro-gram and/or \T1/aer/m/sl/10 massXpert \T1/aer/m/n/10 doc-u-m en-ta-tion bug re-ports[] should be self-explanatory Underfull \hbox (badness 10000) in paragraph at lines 275--277 [6 <./figures/addresses.png>]) (./installation.tex Chapter 2. 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Underfull \vbox (badness 10000) has occurred while \output is active [69] Overfull \hbox (0.13066pt too wide) in paragraph at lines 32--32 [][]\T1/aer/m/sl/20.74 XpertEdit \T1/aer/m/sc/20.74 Op-er-a-tion: \T1/aer/m/it/ 20.74 In Me-dias Res[] [70 <./figures/xpertedit-sel ect-sample-sequence.png (PNG copy)>] [71 <./figures/xpertedit-choose-p ol-chem-def.png (PNG copy)>] [72 <./figures/xpertedit-protein-main-view.png (PN G copy)>] [73] Overfull \hbox (20.56702pt too wide) in paragraph at lines 362--365 []\T1/aer/m/sl/10 Chemistry[] \T1/aer/m/n/10 Cal-cu-late the monomeric/element [74] [75 <./figures/xpertedit-file-m enu.png (PNG copy)> <./figures/xpertedit-chemistry-menu.png (PNG copy)>] Overfull \hbox (4.06323pt too wide) in paragraph at lines 435--436 [] [76 <./figures/xpertedit-3-letter-code-whole-process.png (PNG copy)>] [77] [78 <./figures/xp ertedit-sequence-editor-bad-char.png (PNG copy)>] [79 <./figures/xpertedit-find-seq uence-dlg.png>] Underfull \vbox (badness 1297) has occurred while \output is active [80 <./figu res/xpertedit-sequence-editor-sequence-import-errors-first.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 728--730 [81 <./figures/xpertedit-sequence-editor-sequence-import-errors-second.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 770--781 [82] [83] Underfull \vbox (badness 1584) has occurred while \output is active [84 <./figu res/xpertedit-modify-monomer.png>] Underfull \vbox (badness 10000) has occurred while \output is active [85 <./fig ures/xpertedit-modify-monomer-manually-defined-modif.png (PNG copy)>] [86 <./figures/xpertedit-modify-poly mer.png (PNG copy)>] [87 <./figures/xpertedit-cros s-link-monomers.png (PNG copy)>] LaTeX Warning: Float too large for page by 60.94998pt on input line 1145. 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[113] Overfull \hbox (14.57152pt too wide) in paragraph at lines 98--102 []\T1/aett/m/n/10 monomer_dictionary\T1/aer/m/n/10 : file es-tab-lish-ing the r e-la-tion-ship be-tween any monomer [114] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # between the codes of each monomer and their graphic file (p ixmap[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] [115] [116 <./figures/pol-chem-defs-directory-protein-and-saccharide.png (PNG c opy)>] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # This is the modification_dictionary file where the correspo ndences[] Overfull \hbox (21.79932pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # between the name of each modification and their graphic fil e (pixmap[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # sequence editor are made. Also, the graphical operation tha t is to[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # be performed upon chemical modification of a monomer is lis ted ('T'[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # for transparent and 'O' for opaque). See the manual for det ails.[] [117] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # where Phosphorylation is the name of the modification. T in dicates[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # process (O indicates that the visual rendering of the modif ication[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] Overfull \hbox (82.5854pt too wide) in paragraph at lines 272--283 \T1/aer/m/n/10 listed in the file for the mod-i-fi-ca-tion. 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(./protein-1-letter.xml.tex Overfull \hbox (12.51198pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 The Pro-tein Chem-istry Def-i-ni-tion Overfull \hbox (11.31934pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (278.55884pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [121] Overfull \hbox (37.51929pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] Overfull \hbox (89.91919pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]) [149] (./leu-enkephalin.mxp.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (168.51904pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 [] ) [150] (./pka_ph_pi.xml.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 Copyright 2003 2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 [] Underfull \vbox (badness 10000) has occurred while \output is active [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]) [161] (./GNU-GPL-3.0.tex Overfull \hbox (17.38269pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 GNU Gen-eral Pub-lic Li-cense Text [162] [163] [164] [165] [166] [167] [168] [169] Overfull \hbox (1.69012pt too wide) in paragraph at lines 512--516 []\T1/aer/m/n/10 Each con-trib-u-tor grants you a non-exclusive, world-wide, ro yalty-free patent [170] [171] Overfull \hbox (6.92036pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 STATED IN WRIT-ING THE COPY-RIGHT HOLD-ERS AND/OR OTHER Overfull \hbox (2.58072pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 PAR-TIES PRO-VIDE THE PRO-GRAM ``AS IS'' WITH-OUT WAR-RANTY Overfull \hbox (18.23813pt too wide) in paragraph at lines 628--638 []\T1/aer/m/n/10 IN NO EVENT UN-LESS RE-QUIRED BY AP-PLI-CA-BLE LAW OR AGREED Overfull \hbox (5.53944pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 TO IN WRIT-ING WILL ANY COPY-RIGHT HOLDER, OR ANY OTHER Overfull \hbox (9.5637pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 CLUD-ING ANY GEN-ERAL, SPE-CIAL, IN-CI-DEN-TAL OR CON-SE-QUEN- [172] Overfull \hbox (35.02808pt too wide) in paragraph at lines 679--682 \T1/aer/m/n/10 cense along with this pro-gram. If not, see http://www.gnu.org/l icenses/. ) [173] [174]) (./index.tex (./massxpert.ind [175] [176] [177])) (./massxpert.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)< /usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on massxpert.pdf (193 pages, 8836258 bytes). Transcript written on massxpert.log. cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/makeindex massxpert.idx This is makeindex, version 2.15 [TeX Live 2009] (kpathsea + Thai support). Scanning input file massxpert.idx....done (185 entries accepted, 0 rejected). Sorting entries....done (1483 comparisons). Generating output file massxpert.ind....done (232 lines written, 0 warnings). Output written in massxpert.ind. Transcript written in massxpert.ilg. cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/pdflatex -interaction=nonstopmode massxpert.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./massxpert.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. 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Overfull \hbox (8.38528pt too wide) in paragraph at lines 38--42 \T1/aer/m/n/10 fully pro-grammable (that's the \T1/aer/m/sl/10 Xpert-Calc \T1/a er/m/n/10 mod-ule also part of the \T1/aer/m/sl/10 massXpert [1] [2] Overfull \hbox (10.50308pt too wide) in paragraph at lines 168--168 [][]\T1/aer/m/sc/20.74 Program Avail-abil-ity, Tech-ni-cal- [3] Underfull \hbox (badness 10000) in paragraph at lines 196--201 Overfull \hbox (4.74527pt too wide) in paragraph at lines 212--214 []\T1/aer/m/n/10 The \T1/aer/m/sl/10 Xpert-Def \T1/aer/m/n/10 mod-ule (def-i-ni -tion of atoms and of new poly-mer chemistries); [4] [5] Overfull \hbox (19.99072pt too wide) in paragraph at lines 266--270 []\T1/aer/m/n/10 The gen-eral pol-icy for di-rect-ing ques-tions, com-ments, fe a-ture re-quests, \T1/aer/m/sl/10 massXpert Overfull \hbox (6.16531pt too wide) in paragraph at lines 266--270 \T1/aer/m/n/10 pro-gram and/or \T1/aer/m/sl/10 massXpert \T1/aer/m/n/10 doc-u-m en-ta-tion bug re-ports[] should be self-explanatory Underfull \hbox (badness 10000) in paragraph at lines 275--277 [6 <./figures/addresses.png>]) (./installation.tex Chapter 2. 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In na-ture, biopoly- [48 <./figures/xpertdef-monomers-mass- differences.png>] [49 <./figures/xpertdef-modifications.p ng (PNG copy)>] [50 <./figures/xpertdef-crosslinkers.png ( PNG copy)>] [51 <./figures/xpertdef-cleavages.png>] Overfull \hbox (0.41591pt too wide) in paragraph at lines 547--562 \T1/aer/m/n/10 cleav-age spec-i-fi-ca-tion for ``CyanogenBromide''---that the o ligomers re-sult-ing from [52] Underfull \vbox (badness 10000) has occurred while \output is active [53 <./fig ures/xpertdef-fragmentations-simplest.png>] Underfull \hbox (badness 10000) in paragraph at lines 635--639 [54] [55 <./f igures/xpertdef-fragmentations-special-dna-a-base-case.png>] [56 <./figures/xpertde f-fragmentations-frag-rules.png>] Underfull \hbox (badness 10000) in paragraph at lines 747--758 Underfull \hbox (badness 10000) in paragraph at lines 782--790 [57] [58]) (./xpertcalc.tex Chapter 7. 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Underfull \vbox (badness 10000) has occurred while \output is active [69] Overfull \hbox (0.13066pt too wide) in paragraph at lines 32--32 [][]\T1/aer/m/sl/20.74 XpertEdit \T1/aer/m/sc/20.74 Op-er-a-tion: \T1/aer/m/it/ 20.74 In Me-dias Res[] [70 <./figures/xpertedit-sel ect-sample-sequence.png (PNG copy)>] [71 <./figures/xpertedit-choose-p ol-chem-def.png (PNG copy)>] [72 <./figures/xpertedit-protein-main-view.png (PN G copy)>] [73] Overfull \hbox (20.56702pt too wide) in paragraph at lines 362--365 []\T1/aer/m/sl/10 Chemistry[] \T1/aer/m/n/10 Cal-cu-late the monomeric/element [74] [75 <./figures/xpertedit-file-m enu.png (PNG copy)> <./figures/xpertedit-chemistry-menu.png (PNG copy)>] Overfull \hbox (4.06323pt too wide) in paragraph at lines 435--436 [] [76 <./figures/xpertedit-3-letter-code-whole-process.png (PNG copy)>] [77] [78 <./figures/xp ertedit-sequence-editor-bad-char.png (PNG copy)>] [79 <./figures/xpertedit-find-seq uence-dlg.png>] Underfull \vbox (badness 1297) has occurred while \output is active [80 <./figu res/xpertedit-sequence-editor-sequence-import-errors-first.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 728--730 [81 <./figures/xpertedit-sequence-editor-sequence-import-errors-second.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 770--781 [82] [83] Underfull \vbox (badness 1584) has occurred while \output is active [84 <./figu res/xpertedit-modify-monomer.png>] Underfull \vbox (badness 10000) has occurred while \output is active [85 <./fig ures/xpertedit-modify-monomer-manually-defined-modif.png (PNG copy)>] [86 <./figures/xpertedit-modify-poly mer.png (PNG copy)>] [87 <./figures/xpertedit-cros s-link-monomers.png (PNG copy)>] LaTeX Warning: Float too large for page by 60.94998pt on input line 1145. 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[113] Overfull \hbox (14.57152pt too wide) in paragraph at lines 98--102 []\T1/aett/m/n/10 monomer_dictionary\T1/aer/m/n/10 : file es-tab-lish-ing the r e-la-tion-ship be-tween any monomer [114] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # between the codes of each monomer and their graphic file (p ixmap[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] [115] [116 <./figures/pol-chem-defs-directory-protein-and-saccharide.png (PNG c opy)>] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # This is the modification_dictionary file where the correspo ndences[] Overfull \hbox (21.79932pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # between the name of each modification and their graphic fil e (pixmap[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # sequence editor are made. 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(./protein-1-letter.xml.tex Overfull \hbox (12.51198pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 The Pro-tein Chem-istry Def-i-ni-tion Overfull \hbox (11.31934pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (278.55884pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [121] Overfull \hbox (37.51929pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] Overfull \hbox (89.91919pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]) [149] (./leu-enkephalin.mxp.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (168.51904pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 [] ) [150] (./pka_ph_pi.xml.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 Copyright 2003 2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 [] Underfull \vbox (badness 10000) has occurred while \output is active [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]) [161] (./GNU-GPL-3.0.tex Overfull \hbox (17.38269pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 GNU Gen-eral Pub-lic Li-cense Text [162] [163] [164] [165] [166] [167] [168] [169] Overfull \hbox (1.69012pt too wide) in paragraph at lines 512--516 []\T1/aer/m/n/10 Each con-trib-u-tor grants you a non-exclusive, world-wide, ro yalty-free patent [170] [171] Overfull \hbox (6.92036pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 STATED IN WRIT-ING THE COPY-RIGHT HOLD-ERS AND/OR OTHER Overfull \hbox (2.58072pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 PAR-TIES PRO-VIDE THE PRO-GRAM ``AS IS'' WITH-OUT WAR-RANTY Overfull \hbox (18.23813pt too wide) in paragraph at lines 628--638 []\T1/aer/m/n/10 IN NO EVENT UN-LESS RE-QUIRED BY AP-PLI-CA-BLE LAW OR AGREED Overfull \hbox (5.53944pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 TO IN WRIT-ING WILL ANY COPY-RIGHT HOLDER, OR ANY OTHER Overfull \hbox (9.5637pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 CLUD-ING ANY GEN-ERAL, SPE-CIAL, IN-CI-DEN-TAL OR CON-SE-QUEN- [172] Overfull \hbox (35.02808pt too wide) in paragraph at lines 679--682 \T1/aer/m/n/10 cense along with this pro-gram. If not, see http://www.gnu.org/l icenses/. ) [173] [174]) (./index.tex (./massxpert.ind [175] [176] [177])) (./massxpert.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)< /usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on massxpert.pdf (193 pages, 8836258 bytes). Transcript written on massxpert.log. cd /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual && /usr/bin/cmake -E chdir /build/buildd/massxpert-3.0.0/debian/build-indep/usermanual /usr/bin/pdflatex -interaction=nonstopmode massxpert.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./massxpert.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. 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Overfull \hbox (8.38528pt too wide) in paragraph at lines 38--42 \T1/aer/m/n/10 fully pro-grammable (that's the \T1/aer/m/sl/10 Xpert-Calc \T1/a er/m/n/10 mod-ule also part of the \T1/aer/m/sl/10 massXpert [1] [2] Overfull \hbox (10.50308pt too wide) in paragraph at lines 168--168 [][]\T1/aer/m/sc/20.74 Program Avail-abil-ity, Tech-ni-cal- [3] Underfull \hbox (badness 10000) in paragraph at lines 196--201 Overfull \hbox (4.74527pt too wide) in paragraph at lines 212--214 []\T1/aer/m/n/10 The \T1/aer/m/sl/10 Xpert-Def \T1/aer/m/n/10 mod-ule (def-i-ni -tion of atoms and of new poly-mer chemistries); [4] [5] Overfull \hbox (19.99072pt too wide) in paragraph at lines 266--270 []\T1/aer/m/n/10 The gen-eral pol-icy for di-rect-ing ques-tions, com-ments, fe a-ture re-quests, \T1/aer/m/sl/10 massXpert Overfull \hbox (6.16531pt too wide) in paragraph at lines 266--270 \T1/aer/m/n/10 pro-gram and/or \T1/aer/m/sl/10 massXpert \T1/aer/m/n/10 doc-u-m en-ta-tion bug re-ports[] should be self-explanatory Underfull \hbox (badness 10000) in paragraph at lines 275--277 [6 <./figures/addresses.png>]) (./installation.tex Chapter 2. 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[15] Underfull \vbox (badness 6876) has occurred while \output is active [16] [17 <./figures/peptbond-formation.png (PNG copy)>] [18 <./figures/prot-polymer.png (PNG copy)>] [19 <./figures/nucacbond-formation.png (PNG cop y)>] [20 <./figures/nucac-polymer.png (PNG copy)>] [21 <./figures/sacchbond-formation.png (PNG cop y)> <./figures/sacch-polymer.png (PNG copy)>] [22] [23] [24 <./figures/prot-cleavage.png (PNG copy )>] [25] [26] [27 <./figures/prot-fragmentation.png (PNG copy)>] Overfull \hbox (1.18713pt too wide) in paragraph at lines 735--736 \T1/aer/bx/it/10 b \T1/aer/bx/n/10 frag-ment se-ries[] \T1/aer/m/n/10 Sim-i-la rly, the mass cal-cu-la-tion is math-e-mat-i-cally ex-pressed [28] Overfull \hbox (9.24484pt too wide) in paragraph at lines 761--772 \T1/aer/m/n/10 sense that they do not hold nei-ther of the two pre-cur-sor poly -mer's ends. \T1/aer/m/sl/10 massXpert [29] [30 <./figures/dna-fragmentation.png ( PNG copy)>] [31] Overfull \hbox (2.33554pt too wide) in paragraph at lines 893--895 \T1/aer/m/n/10 To sum up all what we have seen so far with poly-mer chain dis-r upt-ing chemistries: Overfull \hbox (7.70595pt too wide) in paragraph at lines 914--917 []\T1/aer/m/n/10 Fragments are never ion-ized au-to-mat-i-cally; ion-iza-tion ( gain/loss of a charged [32]) (./basics-massspec.tex Chapter 4. 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[63] [64 <./figures/xpertcalc-protein -1-letter-recorder.png (PNG copy)> <./figures/xpertcalc-mz-calculator.png (PNG copy)>] [65] [66 <./figur es/xpertcalc-isotopic-pattern-calculator.png>] [67 <./fi gures/xpertcalc-isotopic-pattern-calculator-example-graph.png (PNG copy)>] [68]) (./xpertedit.tex Chapter 8. Underfull \vbox (badness 10000) has occurred while \output is active [69] Overfull \hbox (0.13066pt too wide) in paragraph at lines 32--32 [][]\T1/aer/m/sl/20.74 XpertEdit \T1/aer/m/sc/20.74 Op-er-a-tion: \T1/aer/m/it/ 20.74 In Me-dias Res[] [70 <./figures/xpertedit-sel ect-sample-sequence.png (PNG copy)>] [71 <./figures/xpertedit-choose-p ol-chem-def.png (PNG copy)>] [72 <./figures/xpertedit-protein-main-view.png (PN G copy)>] [73] Overfull \hbox (20.56702pt too wide) in paragraph at lines 362--365 []\T1/aer/m/sl/10 Chemistry[] \T1/aer/m/n/10 Cal-cu-late the monomeric/element [74] [75 <./figures/xpertedit-file-m enu.png (PNG copy)> <./figures/xpertedit-chemistry-menu.png (PNG copy)>] Overfull \hbox (4.06323pt too wide) in paragraph at lines 435--436 [] [76 <./figures/xpertedit-3-letter-code-whole-process.png (PNG copy)>] [77] [78 <./figures/xp ertedit-sequence-editor-bad-char.png (PNG copy)>] [79 <./figures/xpertedit-find-seq uence-dlg.png>] Underfull \vbox (badness 1297) has occurred while \output is active [80 <./figu res/xpertedit-sequence-editor-sequence-import-errors-first.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 728--730 [81 <./figures/xpertedit-sequence-editor-sequence-import-errors-second.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 770--781 [82] [83] Underfull \vbox (badness 1584) has occurred while \output is active [84 <./figu res/xpertedit-modify-monomer.png>] Underfull \vbox (badness 10000) has occurred while \output is active [85 <./fig ures/xpertedit-modify-monomer-manually-defined-modif.png (PNG copy)>] [86 <./figures/xpertedit-modify-poly mer.png (PNG copy)>] [87 <./figures/xpertedit-cros s-link-monomers.png (PNG copy)>] LaTeX Warning: Float too large for page by 60.94998pt on input line 1145. 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[113] Overfull \hbox (14.57152pt too wide) in paragraph at lines 98--102 []\T1/aett/m/n/10 monomer_dictionary\T1/aer/m/n/10 : file es-tab-lish-ing the r e-la-tion-ship be-tween any monomer [114] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # between the codes of each monomer and their graphic file (p ixmap[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 208--208 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] [115] [116 <./figures/pol-chem-defs-directory-protein-and-saccharide.png (PNG c opy)>] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # The "massXpert" project is released ---in its entirety--- u nder the[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # GNU General Public License and was started (in the form of the GNU[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Scientifique (FRANCE), that granted me the formal authoriza tion to[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # This is the modification_dictionary file where the correspo ndences[] Overfull \hbox (21.79932pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # between the name of each modification and their graphic fil e (pixmap[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # sequence editor are made. Also, the graphical operation tha t is to[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # be performed upon chemical modification of a monomer is lis ted ('T'[] Overfull \hbox (0.83936pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # for transparent and 'O' for opaque). See the manual for det ails.[] [117] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # where Phosphorylation is the name of the modification. T in dicates[] Overfull \hbox (11.31934pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # process (O indicates that the visual rendering of the modif ication[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 265--265 []\T1/aett/m/n/10 # Each line starting with a '#' character is a comment and is ignored[] Overfull \hbox (82.5854pt too wide) in paragraph at lines 272--283 \T1/aer/m/n/10 listed in the file for the mod-i-fi-ca-tion. 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(./protein-1-letter.xml.tex Overfull \hbox (12.51198pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 The Pro-tein Chem-istry Def-i-ni-tion Overfull \hbox (11.31934pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (278.55884pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [121] Overfull \hbox (37.51929pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] Overfull \hbox (89.91919pt too wide) in paragraph at lines 1422--1422 []\T1/aett/m/n/10 [] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148]) [149] (./leu-enkephalin.mxp.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (168.51904pt too wide) in paragraph at lines 52--52 []\T1/aett/m/n/10 [] ) [150] (./pka_ph_pi.xml.tex Overfull \hbox (11.31934pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 Copyright 2003 2007 Filippo Rusconi - Licensed under the GNU GPL -->[] Overfull \hbox (16.55933pt too wide) in paragraph at lines 526--526 []\T1/aett/m/n/10 [] Underfull \vbox (badness 10000) has occurred while \output is active [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]) [161] (./GNU-GPL-3.0.tex Overfull \hbox (17.38269pt too wide) in paragraph at lines 2--2 []\T1/aer/m/sc/20.74 GNU Gen-eral Pub-lic Li-cense Text [162] [163] [164] [165] [166] [167] [168] [169] Overfull \hbox (1.69012pt too wide) in paragraph at lines 512--516 []\T1/aer/m/n/10 Each con-trib-u-tor grants you a non-exclusive, world-wide, ro yalty-free patent [170] [171] Overfull \hbox (6.92036pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 STATED IN WRIT-ING THE COPY-RIGHT HOLD-ERS AND/OR OTHER Overfull \hbox (2.58072pt too wide) in paragraph at lines 616--625 \T1/aer/m/n/10 PAR-TIES PRO-VIDE THE PRO-GRAM ``AS IS'' WITH-OUT WAR-RANTY Overfull \hbox (18.23813pt too wide) in paragraph at lines 628--638 []\T1/aer/m/n/10 IN NO EVENT UN-LESS RE-QUIRED BY AP-PLI-CA-BLE LAW OR AGREED Overfull \hbox (5.53944pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 TO IN WRIT-ING WILL ANY COPY-RIGHT HOLDER, OR ANY OTHER Overfull \hbox (9.5637pt too wide) in paragraph at lines 628--638 \T1/aer/m/n/10 CLUD-ING ANY GEN-ERAL, SPE-CIAL, IN-CI-DEN-TAL OR CON-SE-QUEN- [172] Overfull \hbox (35.02808pt too wide) in paragraph at lines 679--682 \T1/aer/m/n/10 cense along with this pro-gram. If not, see http://www.gnu.org/l icenses/. ) [173] [174]) (./index.tex (./massxpert.ind [175] [176] [177])) (./massxpert.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)< /usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on massxpert.pdf (193 pages, 8836258 bytes). Transcript written on massxpert.log. make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 [100%] Built target pdf make[2]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-indep' /usr/bin/cmake -E cmake_progress_start /build/buildd/massxpert-3.0.0/debian/build-indep/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-indep' make[2]: Nothing to be done for `preinstall'. make[2]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-indep' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: 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/build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/chicken-telokin.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/citrin-fluorescent-protein.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/cyan-fluorescent-protein-h148d-histag.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/cyan-fluorescent-protein.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/horse-myoglobin.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/insulin-a-ox.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/insulin-b-ox.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/kunitz-inhibitor-human.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/leu-enkephalin.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/protein-1-letter.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/protein-3-letters.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/tev-protease-his-tag.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/pol-seqs/yellow-fluorescent-protein.mxp -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/dictionaries -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/dictionaries/codon-to-protein-1.dic -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/dictionaries/codon-to-protein-3.dic -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/dictionaries/pdb-protein-to-mxp.dic -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/dictionaries/protein-1-to-3.dic -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/dictionaries/protein-3-to-1.dic -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/massxpert/chem_pad.conf -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/doc/massxpert/usermanual/massxpert.pdf make[1]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-indep' rm /build/buildd/massxpert-3.0.0/debian/tmp-indep/usr/share/doc/massxpert/COPYING touch install-indep-stamp dh_testdir -i dh_testroot -i dh_installchangelogs -i install -d debian/massxpert-data/usr/share/doc/massxpert-data install -o 0 -g 0 -p -m644 debian/changelog debian/massxpert-data/usr/share/doc/massxpert-data/changelog.Debian install -d debian/massxpert-doc/usr/share/doc/massxpert-doc install -o 0 -g 0 -p -m644 debian/changelog debian/massxpert-doc/usr/share/doc/massxpert-doc/changelog.Debian dh_installdocs -i install -g 0 -o 0 -m 644 -p debian/copyright debian/massxpert-data/usr/share/doc/massxpert-data/copyright install -g 0 -o 0 -m 644 -p debian/copyright debian/massxpert-doc/usr/share/doc/massxpert-doc/copyright install -g 0 -o 0 -d debian/massxpert-doc/usr/share/doc-base/ install -g 0 -o 0 -m644 -p debian/massxpert-doc.doc-base debian/massxpert-doc/usr/share/doc-base/massxpert-usermanual dh_install -i install -d debian/massxpert-data/usr/share/massxpert/ cp -a ./debian/tmp-indep/usr/share/massxpert/dictionaries debian/massxpert-data/usr/share/massxpert// cp -a ./debian/tmp-indep/usr/share/massxpert/chem_pad.conf debian/massxpert-data/usr/share/massxpert// cp -a ./debian/tmp-indep/usr/share/massxpert/pol-chem-defs debian/massxpert-data/usr/share/massxpert// cp -a ./debian/tmp-indep/usr/share/massxpert/pol-seqs debian/massxpert-data/usr/share/massxpert// cp -a ./debian/tmp-indep/usr/share/doc/massxpert/usermanual/massxpert.pdf debian/massxpert-doc/usr/share/doc/massxpert-doc/ dh_installman -i install -d debian/massxpert-data/usr/share/man/man7/ install -p -m644 debian/tmp-indep/usr/share/man/man7/massxpert-data.7 debian/massxpert-data/usr/share/man/man7/massxpert-data.7 man --recode UTF-8 ./massxpert\-data\.7 > massxpert\-data\.7\.new chmod 644 massxpert-data.7.new mv -f massxpert-data.7.new massxpert-data.7 install -d debian/massxpert-doc/usr/share/man/man7/ install -p -m644 debian/tmp-indep/usr/share/man/man7/massxpert-doc.7 debian/massxpert-doc/usr/share/man/man7/massxpert-doc.7 man --recode UTF-8 ./massxpert\-doc\.7 > massxpert\-doc\.7\.new chmod 644 massxpert-doc.7.new mv -f massxpert-doc.7.new massxpert-doc.7 dh_compress -Xmassxpert.pdf -i cd debian/massxpert-data chmod a-x usr/share/man/man7/massxpert-data.7 usr/share/doc/massxpert-data/changelog.Debian gzip -9nf usr/share/man/man7/massxpert-data.7 usr/share/doc/massxpert-data/changelog.Debian cd '/build/buildd/massxpert-3.0.0' cd debian/massxpert-doc chmod a-x usr/share/man/man7/massxpert-doc.7 usr/share/doc/massxpert-doc/changelog.Debian gzip -9nf usr/share/man/man7/massxpert-doc.7 usr/share/doc/massxpert-doc/changelog.Debian cd '/build/buildd/massxpert-3.0.0' dh_fixperms -i find debian/massxpert-data -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/massxpert-data ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/massxpert-data/usr/share/doc -type f ! -regex 'debian/massxpert-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-data/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/massxpert-data/usr/share/man debian/massxpert-data/usr/man/ debian/massxpert-data/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-data -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-data/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-data/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-data -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-data/usr/lib/perl5 debian/massxpert-data/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/massxpert-doc -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/massxpert-doc ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/massxpert-doc/usr/share/doc -type f ! -regex 'debian/massxpert-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-doc/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/massxpert-doc/usr/share/man debian/massxpert-doc/usr/man/ debian/massxpert-doc/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-doc -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-doc/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-doc/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-doc -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert-doc/usr/lib/perl5 debian/massxpert-doc/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X dh_installdeb -i install -o 0 -g 0 -d debian/massxpert-data/DEBIAN install -o 0 -g 0 -d debian/massxpert-doc/DEBIAN dh_gencontrol -i echo misc:Depends= >> debian/massxpert-data.substvars dpkg-gencontrol -pmassxpert-data -ldebian/changelog -Tdebian/massxpert-data.substvars -Pdebian/massxpert-data dpkg-gencontrol: warning: Depends field of package massxpert-data: unknown substitution variable ${shlibs:Depends} chmod 644 debian/massxpert-data/DEBIAN/control chown 0:0 debian/massxpert-data/DEBIAN/control echo misc:Depends= >> debian/massxpert-doc.substvars dpkg-gencontrol -pmassxpert-doc -ldebian/changelog -Tdebian/massxpert-doc.substvars -Pdebian/massxpert-doc dpkg-gencontrol: warning: Depends field of package massxpert-doc: unknown substitution variable ${shlibs:Depends} chmod 644 debian/massxpert-doc/DEBIAN/control chown 0:0 debian/massxpert-doc/DEBIAN/control dh_md5sums -i (cd debian/massxpert-data >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/massxpert-data/DEBIAN/md5sums chown 0:0 debian/massxpert-data/DEBIAN/md5sums (cd debian/massxpert-doc >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/massxpert-doc/DEBIAN/md5sums chown 0:0 debian/massxpert-doc/DEBIAN/md5sums dh_builddeb -i dpkg-deb --build debian/massxpert-data .. INFO: pkgstriptranslations version 101 pkgstriptranslations: processing control file: ./debian/massxpert-data/DEBIAN/control, package massxpert-data, directory ./debian/massxpert-data pkgstriptranslations: massxpert-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/massxpert-doc/DEBIAN/control, package massxpert-doc, directory ./debian/massxpert-doc pkgstriptranslations: massxpert-doc does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/massxpert-data/DEBIAN/control, package massxpert-data, directory debian/massxpert-data pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/massxpert-data/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `massxpert-data' in `../massxpert-data_3.0.0-1_all.deb'. dpkg-deb --build debian/massxpert-doc .. INFO: pkgstriptranslations version 101 pkgstriptranslations: processing control file: ./debian/massxpert-data/DEBIAN/control, package massxpert-data, directory ./debian/massxpert-data pkgstriptranslations: massxpert-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/massxpert-doc/DEBIAN/control, package massxpert-doc, directory ./debian/massxpert-doc pkgstriptranslations: massxpert-doc does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/massxpert-doc/DEBIAN/control, package massxpert-doc, directory debian/massxpert-doc pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/massxpert-doc/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `massxpert-doc' in `../massxpert-doc_3.0.0-1_all.deb'. dh_testdir dh_testroot dh_installdirs -a install -d debian/massxpert install -d debian/massxpert/usr/bin debian/massxpert/usr/lib mkdir -p /build/buildd/massxpert-3.0.0/debian/tmp-arch /usr/bin/make -C /build/buildd/massxpert-3.0.0/debian/build-arch install DESTDIR=/build/buildd/massxpert-3.0.0/debian/tmp-arch make[1]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -H/build/buildd/massxpert-3.0.0 -B/build/buildd/massxpert-3.0.0/debian/build-arch --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/make -f lib/CMakeFiles/masslib.dir/build.make lib/CMakeFiles/masslib.dir/depend /usr/bin/make -f gui/CMakeFiles/massxpert.dir/build.make gui/CMakeFiles/massxpert.dir/depend make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 /build/buildd/massxpert-3.0.0/lib /build/buildd/massxpert-3.0.0/debian/build-arch /build/buildd/massxpert-3.0.0/debian/build-arch/lib /build/buildd/massxpert-3.0.0/debian/build-arch/lib/CMakeFiles/masslib.dir/DependInfo.cmake --color= make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/make -f lib/CMakeFiles/masslib.dir/build.make lib/CMakeFiles/masslib.dir/build make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' make[3]: Nothing to be done for `lib/CMakeFiles/masslib.dir/build'. make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 [ 22%] Built target masslib /usr/bin/make -f plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/build.make plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/depend make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 /build/buildd/massxpert-3.0.0/plugins-src/massListSorterPlugin /build/buildd/massxpert-3.0.0/debian/build-arch /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/DependInfo.cmake --color= make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/make -f plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/build.make plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/build make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' make[3]: Nothing to be done for `plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/build'. make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 1 2 [ 24%] Built target massListSorterPlugin /usr/bin/make -f plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/build.make plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/depend make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 /build/buildd/massxpert-3.0.0/plugins-src/seqToolsPlugin /build/buildd/massxpert-3.0.0/debian/build-arch /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/DependInfo.cmake --color= make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/make -f plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/build.make plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/build make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' make[3]: Nothing to be done for `plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/build'. make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 98 99 100 [ 27%] Built target seqToolsPlugin /usr/bin/make -f plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/build.make plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/depend make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 /build/buildd/massxpert-3.0.0/plugins-src/numeralsLocaleConverterPlugin /build/buildd/massxpert-3.0.0/debian/build-arch /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin /build/buildd/massxpert-3.0.0/debian/build-arch/plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/DependInfo.cmake --color= make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/make -f plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/build.make plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/build make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' make[3]: Nothing to be done for `plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/build'. make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 96 97 [ 29%] Built target numeralsLocaleConverterPlugin make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' cd /build/buildd/massxpert-3.0.0/debian/build-arch && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/massxpert-3.0.0 /build/buildd/massxpert-3.0.0/gui /build/buildd/massxpert-3.0.0/debian/build-arch /build/buildd/massxpert-3.0.0/debian/build-arch/gui /build/buildd/massxpert-3.0.0/debian/build-arch/gui/CMakeFiles/massxpert.dir/DependInfo.cmake --color= make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/make -f gui/CMakeFiles/massxpert.dir/build.make gui/CMakeFiles/massxpert.dir/build make[3]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' make[3]: Nothing to be done for `gui/CMakeFiles/massxpert.dir/build'. make[3]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_report /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 [100%] Built target massxpert make[2]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' /usr/bin/cmake -E cmake_progress_start /build/buildd/massxpert-3.0.0/debian/build-arch/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory `/build/buildd/massxpert-3.0.0/debian/build-arch' make[2]: Nothing to be done for `preinstall'. make[2]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/share/doc/massxpert/COPYING -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/share/applications/massxpert.desktop -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/share/man/man1/massxpert.1 -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/bin/massxpert -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/lib/massxpert/plugins/libmassListSorterPlugin.so -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/lib/massxpert/plugins/libseqToolsPlugin.so -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/lib/massxpert/plugins/libnumeralsLocaleConverterPlugin.so -- Installing: /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/share/massxpert/locales/massxpert_fr.qm make[1]: Leaving directory `/build/buildd/massxpert-3.0.0/debian/build-arch' install -o root -g root -d /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/share/pixmaps install -o root -g root -m 644 \ /build/buildd/massxpert-3.0.0/gui/images/massxpert-icon-32.xpm \ /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/share/pixmaps/massxpert-icon-32.xpm rm /build/buildd/massxpert-3.0.0/debian/tmp-arch/usr/share/doc/massxpert/COPYING touch install-arch-stamp dh_testdir -a dh_testroot -a dh_installchangelogs -a install -d debian/massxpert/usr/share/doc/massxpert install -o 0 -g 0 -p -m644 debian/changelog debian/massxpert/usr/share/doc/massxpert/changelog.Debian dh_installdocs -a install -g 0 -o 0 -m 644 -p debian/copyright debian/massxpert/usr/share/doc/massxpert/copyright dh_install -a cp -a ./debian/tmp-arch/usr/bin/massxpert debian/massxpert/usr/bin/ cp -a ./debian/tmp-arch/usr/lib/massxpert debian/massxpert/usr/lib/ install -d debian/massxpert/usr/share/pixmaps cp -a ./debian/tmp-arch/usr/share/pixmaps/massxpert-icon-32.xpm debian/massxpert/usr/share/pixmaps/ install -d debian/massxpert/usr/share/applications cp -a ./debian/tmp-arch/usr/share/applications/massxpert.desktop debian/massxpert/usr/share/applications/ install -d debian/massxpert/usr/share/massxpert/locales cp -a ./debian/tmp-arch/usr/share/massxpert/locales/massxpert_fr.qm debian/massxpert/usr/share/massxpert/locales/ dh_installmenu -a install -d debian/massxpert/usr/share/menu install -p -m644 debian/massxpert.menu debian/massxpert/usr/share/menu/massxpert echo "# Automatically added by dh_installmenu">> debian/massxpert.postinst.debhelper sed "" /usr/share/debhelper/autoscripts/postinst-menu >> debian/massxpert.postinst.debhelper echo '# End automatically added section' >> debian/massxpert.postinst.debhelper echo "# Automatically added by dh_installmenu">> debian/massxpert.postrm.debhelper sed "" /usr/share/debhelper/autoscripts/postrm-menu >> debian/massxpert.postrm.debhelper echo '# End automatically added section' >> debian/massxpert.postrm.debhelper dh_installman -a install -d debian/massxpert/usr/share/man/man1/ install -p -m644 debian/tmp-arch/usr/share/man/man1/massxpert.1 debian/massxpert/usr/share/man/man1/massxpert.1 man --recode UTF-8 ./massxpert\.1 > massxpert\.1\.new chmod 644 massxpert.1.new mv -f massxpert.1.new massxpert.1 dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: massxpert dh_strip debug symbol extraction: packages to act on: massxpert dh_strip debug symbol extraction: ignored packages: dpkg-deb: building package `massxpert-dbgsym' in `../massxpert-dbgsym_3.0.0-1_i386.ddeb'. strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/massxpert/usr/lib/massxpert/plugins/libmassListSorterPlugin.so strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/massxpert/usr/lib/massxpert/plugins/libseqToolsPlugin.so strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/massxpert/usr/lib/massxpert/plugins/libnumeralsLocaleConverterPlugin.so strip --remove-section=.comment --remove-section=.note debian/massxpert/usr/bin/massxpert dh_compress -a cd debian/massxpert chmod a-x usr/share/man/man1/massxpert.1 usr/share/doc/massxpert/changelog.Debian gzip -9nf usr/share/man/man1/massxpert.1 usr/share/doc/massxpert/changelog.Debian cd '/build/buildd/massxpert-3.0.0' dh_fixperms -a find debian/massxpert -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/massxpert ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/massxpert/usr/share/doc -type f ! -regex 'debian/massxpert/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/massxpert/usr/share/man debian/massxpert/usr/man/ debian/massxpert/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/massxpert/usr/lib/perl5 debian/massxpert/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/massxpert/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x dh_installdeb -a install -o 0 -g 0 -d debian/massxpert/DEBIAN printf '#!/bin/sh set -e ' > debian/massxpert/DEBIAN/postinst cat debian/massxpert.postinst.debhelper >> debian/massxpert/DEBIAN/postinst chown 0:0 debian/massxpert/DEBIAN/postinst chmod 755 debian/massxpert/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/massxpert/DEBIAN/postrm cat debian/massxpert.postrm.debhelper >> debian/massxpert/DEBIAN/postrm chown 0:0 debian/massxpert/DEBIAN/postrm chmod 755 debian/massxpert/DEBIAN/postrm dh_shlibdeps -a dpkg-shlibdeps -Tdebian/massxpert.substvars debian/massxpert/usr/bin/massxpert debian/massxpert/usr/lib/massxpert/plugins/libmassListSorterPlugin.so debian/massxpert/usr/lib/massxpert/plugins/libseqToolsPlugin.so debian/massxpert/usr/lib/massxpert/plugins/libnumeralsLocaleConverterPlugin.so dh_gencontrol -a echo misc:Depends= >> debian/massxpert.substvars dpkg-gencontrol -pmassxpert -ldebian/changelog -Tdebian/massxpert.substvars -Pdebian/massxpert chmod 644 debian/massxpert/DEBIAN/control chown 0:0 debian/massxpert/DEBIAN/control dh_md5sums -a (cd debian/massxpert >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/massxpert/DEBIAN/md5sums chown 0:0 debian/massxpert/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/massxpert .. INFO: pkgstriptranslations version 101 pkgstriptranslations: processing control file: ./debian/massxpert-data/DEBIAN/control, package massxpert-data, directory ./debian/massxpert-data pkgstriptranslations: massxpert-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/massxpert-doc/DEBIAN/control, package massxpert-doc, directory ./debian/massxpert-doc pkgstriptranslations: massxpert-doc does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/massxpert/DEBIAN/control, package massxpert, directory ./debian/massxpert ./debian/massxpert/usr/share/applications/massxpert.desktop: does not have gettext domain, not stripping pkgstriptranslations: massxpert does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/massxpert/DEBIAN/control, package massxpert, directory debian/massxpert pkgstripfiles: Truncating changelog to topmost ten records Skipping arch: any to arch: all dependency to massxpert-data Skipping arch: any to arch: all dependency to massxpert-data dpkg-deb: warning: 'debian/massxpert/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `massxpert' in `../massxpert_3.0.0-1_i386.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../massxpert_3.0.0-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build massxpert-3.0.0 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20110727-1944 Publishing debug debs. chroot-autobuild/build/buildd/massxpert-data_3.0.0-1_all.deb: new debian package, version 2.0. size 203268 bytes: control archive= 5514 bytes. 721 bytes, 18 lines control 19259 bytes, 204 lines md5sums Package: massxpert-data Source: massxpert Version: 3.0.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 1700 Section: science Priority: optional Homepage: http://www.massxpert.org Description: linear polymer mass spectrometry software - arch-indep data massXpert is a program to simulate and analyse mass spectrometric data obtained on linear (bio-)polymers. It is the successor of GNU polyxmass. . This package contains the architecture-independent data required for the proper functioning of massXpert. For example, polymer chemistry definition files are in this package. chroot-autobuild/build/buildd/massxpert-doc_3.0.0-1_all.deb: new debian package, version 2.0. size 8303122 bytes: control archive= 714 bytes. 578 bytes, 16 lines control 376 bytes, 5 lines md5sums Package: massxpert-doc Source: massxpert Version: 3.0.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 8708 Section: doc Priority: optional Homepage: http://www.massxpert.org Description: Linear polymer mass spectrometry software - manual massXpert is a program to simulate and analyse mass spectrometric data obtained on linear (bio-)polymers. It is the successor of GNU polyxmass. . This package contains the manual in PDF format. chroot-autobuild/build/buildd/massxpert_3.0.0-1_i386.deb: new debian package, version 2.0. size 1129498 bytes: control archive= 1491 bytes. 1355 bytes, 30 lines control 816 bytes, 11 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: massxpert Version: 3.0.0-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: The Debichem Group Installed-Size: 2952 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libqt4-svg (>= 4:4.5.3), libqt4-xml (>= 4:4.5.3), libqtcore4 (>= 4:4.7.0~beta1), libqtgui4 (>= 4:4.6.1), libstdc++6 (>= 4.2.1), massxpert-data (>= 3.0.0), massxpert-data (<< 3.0.0A~) Suggests: massxpert-doc Conflicts: massxpert-bin Replaces: massxpert-bin Section: science Priority: optional Homepage: http://www.massxpert.org Description: linear polymer mass spectrometry software massXpert is a program to simulate and analyse mass spectrometric data obtained on linear (bio-)polymers. It is the successor of GNU polyxmass. . Four modules allow: - making brand new polymer chemistry definitions; - using the definitions to perform easy calculations in a desktop calculator-like manner; - performing sophisticated polymer sequence editing and simulations; - perform m/z list comparisons; . Chemical simulations encompass cleavage (either chemical or enzymatic), gas-phase fragmentations, chemical modification of any monomer in the polymer sequence, cross-linking of monomers in the sequence, arbitrary mass searches, calculation of the isotopic pattern... chroot-autobuild/build/buildd/massxpert-data_3.0.0-1_all.deb: drwxr-xr-x root/root 0 2011-07-27 19:43 ./ drwxr-xr-x root/root 0 2011-07-27 19:43 ./usr/ drwxr-xr-x root/root 0 2011-07-27 19:43 ./usr/share/ drwxr-xr-x root/root 0 2011-07-27 19:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-07-27 19:43 ./usr/share/doc/massxpert-data/ -rw-r--r-- root/root 1060 2011-07-22 14:34 ./usr/share/doc/massxpert-data/copyright -rw-r--r-- root/root 1725 2011-07-27 19:43 ./usr/share/doc/massxpert-data/changelog.Debian.gz drwxr-xr-x root/root 0 2011-07-27 19:43 ./usr/share/massxpert/ drwxr-xr-x root/root 0 2011-07-27 19:43 ./usr/share/massxpert/dictionaries/ -rw-r--r-- root/root 955 2011-07-22 14:34 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19:44 ./usr/share/massxpert/locales/ -rw-r--r-- root/root 198171 2011-07-22 14:34 ./usr/share/massxpert/locales/massxpert_fr.qm drwxr-xr-x root/root 0 2011-07-27 19:44 ./usr/share/menu/ -rw-r--r-- root/root 257 2011-07-22 14:34 ./usr/share/menu/massxpert drwxr-xr-x root/root 0 2011-07-27 19:44 ./usr/share/man/ drwxr-xr-x root/root 0 2011-07-27 19:44 ./usr/share/man/man1/ -rw-r--r-- root/root 1115 2011-07-27 19:44 ./usr/share/man/man1/massxpert.1.gz massxpert_3.0.0-1_i386.changes: Format: 1.8 Date: Thu, 21 Jul 2011 22:51:24 +0200 Source: massxpert Binary: massxpert massxpert-data massxpert-doc Architecture: all i386 Version: 3.0.0-1 Distribution: oneiric Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Filippo Rusconi Description: massxpert - linear polymer mass spectrometry software massxpert-data - linear polymer mass spectrometry software - arch-indep data massxpert-doc - Linear polymer mass spectrometry software - manual Changes: massxpert (3.0.0-1) unstable; urgency=low . * Upstream release: . - Major rework of the XpertMiner module; - Bug fixes; - Feature improvements. Checksums-Sha1: 52d04acd3b93fa6497f524177eff0450f27ca976 203268 massxpert-data_3.0.0-1_all.deb bc2ee6ee67cbba48b9c6ef17d0f0c9b61f9e70e2 8303122 massxpert-doc_3.0.0-1_all.deb 6aa3255432f45ba7851dfa6ec29ce742b7293da6 1129498 massxpert_3.0.0-1_i386.deb Checksums-Sha256: e23f80fa7edb339379a7298c79e3312b280e819d2ac6022acd03a0780c0368c5 203268 massxpert-data_3.0.0-1_all.deb 9b9ddad70f51e21ecdff4f7921485bf2f451a220bd21bf659f318fbf470f2c87 8303122 massxpert-doc_3.0.0-1_all.deb c3ddadc1ca59cd400cabbe66777c5c9de9f91c3c6ada1a09dce789db6beecc89 1129498 massxpert_3.0.0-1_i386.deb Files: 20d8fd00643a091980a6ec17abe6bd5c 203268 science optional massxpert-data_3.0.0-1_all.deb 668ec3cae3fde518705becebf8b0ebb0 8303122 doc optional massxpert-doc_3.0.0-1_all.deb 877c9c440b5b50ab56b7085d4f980700 1129498 science optional massxpert_3.0.0-1_i386.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/massxpert-3.0.0 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge libxmu6 groff-base libx11-data fontconfig-config ttf-dejavu-core gettext file libxaw7 libqt4-sql libqt4-help fontconfig libxpm4 libqtgui4 texlive-common x11-common libqt4-qt3support libcroco3 libxi6 libfreetype6 libjpeg62 texlive-latex-recommended libxcb1 tex-common libcurl3 html2text libqtcore4 debhelper libfontconfig1 libpoppler13 libqt4-xmlpatterns libqt4-script libmagic1 libtiff4 libexpat1 qt4-qmake bsdmainutils libxau6 texlive-fonts-recommended libx11-6 mime-support libqt4-dbus libqt4-dev libxt6 libmng1 libxdmcp6 qt4-linguist-tools texlive-base libkpathsea5 texlive-doc-base po-debconf libqt4-xml emacsen-common cmake-data libxml2 liblcms1 ed libxmlrpc-core-c3-0 cmake man-db libice6 intltool-debian libqt4-svg libxrender1 luatex texlive-latex-base ucf libqt4-declarative gettext-base libqt4-network libqt4-designer libarchive1 libqt4-scripttools libunistring0 libqt4-test libsm6 libpipeline1 libxext6 texlive-binaries libaudio2 (Reading database ... 28224 files and directories currently installed.) Removing texlive-latex-recommended ... Purging configuration files for texlive-latex-recommended ... Removing debhelper ... Removing texlive-fonts-recommended ... Purging configuration files for texlive-fonts-recommended ... Removing libqt4-dev ... Removing qt4-linguist-tools ... Removing po-debconf ... Removing cmake ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing libqt4-svg ... Purging configuration files for libqt4-svg ... Removing texlive-latex-base ... Purging configuration files for texlive-latex-base ... Removing libarchive1 ... Purging configuration files for libarchive1 ... Removing libqt4-scripttools ... Purging configuration files for libqt4-scripttools ... Removing libqt4-test ... Purging configuration files for libqt4-test ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing groff-base ... 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Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing texlive-binaries ... Removing libxaw7 ... Purging configuration files for libxaw7 ... Removing libxpm4 ... Purging configuration files for libxpm4 ... Removing texlive-common ... Removing tex-common ... Purging configuration files for tex-common ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libpoppler13 ... Purging configuration files for libpoppler13 ... Removing mime-support ... Purging configuration files for mime-support ... Removing libkpathsea5 ... Purging configuration files for libkpathsea5 ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing ed ... Removing libxmu6 ... Purging configuration files for libxmu6 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libqtgui4 ... Purging configuration files for libqtgui4 ... 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Removing libxt6 ... Purging configuration files for libxt6 ... Removing libqt4-network ... Purging configuration files for libqt4-network ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing libqt4-dbus ... Purging configuration files for libqt4-dbus ... Removing libqt4-xml ... Purging configuration files for libqt4-xml ... Removing libice6 ... Purging configuration files for libice6 ... Removing ucf ... Purging configuration files for ucf ... Removing libx11-data ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libqtcore4 ... Purging configuration files for libqtcore4 ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20110727-1944 Build needed 00:08:40, 271028k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '2054b3157680f843eca0965abbef98162d0fb488'] Scanning for processes to kill in build /home/buildd/build-2054b3157680f843eca0965abbef98162d0fb488/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '2054b3157680f843eca0965abbef98162d0fb488'] Unmounting chroot for build 2054b3157680f843eca0965abbef98162d0fb488... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '2054b3157680f843eca0965abbef98162d0fb488'] Removing build 2054b3157680f843eca0965abbef98162d0fb488