Ubuntu
mcl package

Change log for mcl package in Ubuntu

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Published in noble-release
Published in mantic-release
Published in lunar-release
Deleted in lunar-proposed (Reason: Moved to lunar) 
mcl (1:22-282+ds-2) unstable; urgency=medium

  * Team Upload.
  * Re-vendor mcxdeblast back (Closes: #1024170)

 -- Nilesh Patra <email address hidden>  Wed, 16 Nov 2022 17:51:43 +0530
Superseded in lunar-proposed 
mcl (1:22-282+ds-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.6.1 (routine-update)
  * Remove trailing whitespace in debian/copyright (routine-update)
  * Build-Depends: libtingea-dev
  * Deactivate OCaml patch
  * There is no minimcl doc any more, but install the script anyway
  * Drop some doc-base files where doc was removed
  * lintian-overrides for script-with-language-extension

 -- Andreas Tille <email address hidden>  Wed, 02 Nov 2022 13:57:43 +0100
Superseded in lunar-release
Obsolete in kinetic-release
Published in jammy-release
Deleted in jammy-proposed (Reason: Moved to jammy) 
mcl (1:14-137+ds-9build2) jammy; urgency=medium

  * No-change rebuild for ocaml abi changes.

 -- Matthias Klose <email address hidden>  Tue, 25 Jan 2022 17:37:59 +0100
Superseded in jammy-release
Obsolete in impish-release
Obsolete in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
mcl (1:14-137+ds-9build1) hirsute; urgency=medium

  * No-change rebuild for ocaml abi changes.

 -- Matthias Klose <email address hidden>  Tue, 03 Nov 2020 17:11:01 +0100
Superseded in hirsute-release
Obsolete in groovy-release
Deleted in groovy-proposed (Reason: moved to Release) 
mcl (1:14-137+ds-9) unstable; urgency=medium

  * Fix FTBFS when using gcc-10 (Closes: #957525)

 -- Shayan Doust <email address hidden>  Wed, 22 Jul 2020 14:32:45 +0100

Available diffs

Superseded in groovy-release
Deleted in groovy-proposed (Reason: moved to Release) 
mcl (1:14-137+ds-8) unstable; urgency=medium

  * Add myself as an uploader
  * Modify patch to fix missing scripts' installation (Closes: #963774)

 -- Shayan Doust <email address hidden>  Mon, 29 Jun 2020 10:54:16 +0100
Superseded in groovy-proposed 
mcl (1:14-137+ds-7) unstable; urgency=medium

  * Team upload.

  [ Andreas Tille ]
  * Add missing Build-Depends: bsdextrautils
  * Enable backports

  [ Shayan Doust ]
  * Install missing library

 -- Shayan Doust <email address hidden>  Sun, 21 Jun 2020 19:27:10 +0100

Available diffs

Superseded in groovy-proposed 
mcl (1:14-137+ds-6) unstable; urgency=medium

  * Source-only upload

 -- Andreas Tille <email address hidden>  Wed, 17 Jun 2020 12:25:00 +0200
Superseded in groovy-release
Published in focal-release
Obsolete in eoan-release
Deleted in eoan-proposed (Reason: moved to release) 
mcl (1:14-137+ds-4) unstable; urgency=medium

  [ Saira Hussain ]
  * Team upload.
  * Provide autopkgtest

  [ Andreas Tille ]
  * Standards-Version: 4.4.0
  * debhelper 12

 -- Saira Hussain <email address hidden>  Thu, 11 Jul 2019 14:30:55 +0200

Available diffs

Superseded in eoan-release
Obsolete in disco-release
Deleted in disco-proposed (Reason: moved to release) 
mcl (1:14-137+ds-3) unstable; urgency=medium

  * Philipp Benner <email address hidden> has retired - thanks for your
    work on this package
    Closes: #913462

 -- Andreas Tille <email address hidden>  Thu, 06 Dec 2018 10:07:17 +0100

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
mcl (1:14-137+ds-2) unstable; urgency=medium

  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Remove trailing whitespace in debian/copyright
  * Fix Perl interpreter path

 -- Andreas Tille <email address hidden>  Mon, 29 Oct 2018 09:51:31 +0100

Available diffs

Superseded in disco-release
Obsolete in cosmic-release
Published in bionic-release
Deleted in bionic-proposed (Reason: moved to release) 
mcl (1:14-137+ds-1) unstable; urgency=medium

  * Do not save copies of docs in d/rules
    Closes: #887829
  * Remove files from upstream tarball which will be recreated and
    prevent building the package twice in a row
  * Standards-Version: 4.1.3
  * debhelper 11
  * Fix further spelling issues

 -- Andreas Tille <email address hidden>  Mon, 22 Jan 2018 13:00:52 +0100

Available diffs

Superseded in bionic-release
Deleted in bionic-proposed (Reason: moved to release) 
mcl (1:14-137-2) unstable; urgency=medium

  * DEP5
  * Moved packaging from SVN to Git
  * debhelper 10
  * Standards-Version: 4.1.1
  * Secure watch file
  * DEP3
  * hardening=+all
  * Fix spelling
  * Fix whatis entry in manpages

 -- Andreas Tille <email address hidden>  Tue, 28 Nov 2017 11:08:18 +0100

Available diffs

Superseded in bionic-release
Obsolete in artful-release
Obsolete in zesty-release
Obsolete in yakkety-release
Published in xenial-release
Obsolete in wily-release
Obsolete in vivid-release
Obsolete in utopic-release
Deleted in utopic-proposed (Reason: moved to release) 
mcl (1:14-137-1) unstable; urgency=medium


  * New upstream version
  * Moved debian/upstream to debian/upstream/metadata
  * debian/control:
     - cme fix dpkg-control
     - debhelper 9
  * debian/rules: short dh
  * html docs are now installed into html subdirectory

 -- Andreas Tille <email address hidden>  Tue, 20 May 2014 15:50:29 +0200

Available diffs

Superseded in utopic-release
Published in trusty-release
Obsolete in saucy-release
Deleted in saucy-proposed (Reason: moved to release) 
mcl (1:12-135-2) unstable; urgency=low


  * Added mayhem bugfixes.
  * Standards version 3.9.4.

 -- Philipp Benner <email address hidden>  Sun, 07 Jul 2013 15:01:08 +0200

Available diffs

Superseded in saucy-release
Obsolete in raring-release
Deleted in raring-proposed (Reason: moved to release) 
mcl (1:12-135-1) unstable; urgency=low


  [ Andreas Tille ]
  * debian/upstream: Add citation information

  [ Philipp Benner ]
  * New upstream release
  * Hardening flags
  * Renamed variables with name 'restricted' in src/impala/matrix.c
    (Closes: #688655)

 -- Philipp Benner <email address hidden>  Sun, 27 Jan 2013 15:49:50 +0100

Available diffs

Superseded in raring-release
Obsolete in quantal-release 
mcl (1:12-068-1) unstable; urgency=low


  * New upstream version
  * debian/control: Standards version 3.9.2

 -- Philipp Benner <email address hidden>  Fri, 09 Mar 2012 15:15:48 +0000
Superseded in quantal-release
Published in precise-release 
mcl (1:11-294-1) unstable; urgency=low

  * New upstream version
  * debian/rules: Added targets build-indep and build-arch
  * debian/control: Standards version 3.9.2
 -- Ubuntu Archive Auto-Sync <email address hidden>   Sun,  13 Nov 2011 22:20:54 +0000

Available diffs

Superseded in precise-release
Obsolete in oneiric-release 
mcl (1:10-201-21) unstable; urgency=low

  * New upstream version
  * debian/control:
    - Added myself to uploaders
    - Fixed spelling of Debian Med
    - Standards-Version: 3.9.1 (no changes needed)
    - debhelper 7
    - removed versioned conflicts for mcl-doc from quite old mcl version
      which seems to be useless these days
  * debian/source/format: 3.0 (quilt)
  * debian/rules, debian/patches/01-manpage-errors.patch:
    Use sed on installed packages to get the same effect as the patch but
    there is no need to change the patch for new versions
 -- Ubuntu Archive Auto-Sync <email address hidden>   Sat,  30 Apr 2011 13:17:08 +0000

Available diffs

Superseded in oneiric-release
Obsolete in natty-release
Obsolete in maverick-release 
mcl (1:10-148-1) unstable; urgency=low

  * New upstream release
 -- Ubuntu Archive Auto-Sync <email address hidden>   Sat,  05 Jun 2010 11:28:53 +0100

Available diffs

Superseded in maverick-release
Obsolete in lucid-release 
mcl (1:09-308-1) unstable; urgency=low

  * New upstream release
  * Moved repository to debian-med
 -- Ubuntu Archive Auto-Sync <email address hidden>   Tue,  08 Dec 2009 02:20:12 +0000

Available diffs

Superseded in lucid-release 
mcl (1:09-261-1) unstable; urgency=low

  * New upstream release

Available diffs

Superseded in lucid-release
Obsolete in karmic-release 
mcl (1:08-312-1) unstable; urgency=low

  * New upstream release.
  * Added debian/patches/manpages-whatis-fix.patch.
  * Added debian/patches/perl-interpreter-path.patch
  * Build-depends on zoem and tidy to regenerate manuals.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Wed,  29 Apr 2009 12:03:57 +0100

Available diffs

Superseded in karmic-release
Obsolete in jaunty-release
Obsolete in intrepid-release 
mcl (1:06-058-2) unstable; urgency=low

  * New maintainer e-mail address.
  * debian/control: Added DM-Upload-Allowed: yes.
  * debian/mcl-doc.doc-base.mcxio: fixed typo.
  * Changed the doc-base section according to the new policy.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Fri,  02 May 2008 02:18:52 +0100
Superseded in intrepid-release
Obsolete in hardy-release 
mcl (1:06-058-1) unstable; urgency=low

  * Adopting package (Closes: #452405).
  * Standards version 3.7.2.
  * Added Vcs-Browser and Vcs-Svn field to debian/control.
  * Machine interpretable copyright file.
  * Improved config.{guess,sub} handling.
  * New upstream release.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Mon,  10 Dec 2007 21:43:52 +0000
Superseded in hardy-release 
mcl (1:06-021-2) unstable; urgency=low

  * Orphaning this package (per Bug #452405).  Set maintainer to Debian
    QA Group.
  * Move Homepage to control field.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Mon,  26 Nov 2007 09:25:05 +0000
Superseded in hardy-release
Obsolete in gutsy-release
Obsolete in feisty-release
Obsolete in edgy-release 
mcl (1:06-021-1) unstable; urgency=low

  * New stable upstream release: Analysis and cache modes have been improved.
    This mcl binary in this release displays a citation reference on STDERR.
    Of course we honor upstream's wishes here, and do not suppress this
    helpful reminder.  See the comments in debian/rules for hints on how to
    operate if you disagree.
  * debian/control: found out how to add Homepage pseudo-field (finally!)
  * debian/control: we no longer ship plain text manpages in mcl-doc, adjust
    description.

 -- Ubuntu Archive Auto-Sync <email address hidden>   Thu,  15 Jun 2006 15:01:56 +0100
Superseded in edgy-release
Obsolete in dapper-release
Superseded in dapper-release 
mcl (1:05-321-1) unstable; urgency=low


  * New stable upstream release.  (Missed 05-272, 05-300, 05-314.)
    Some rephrased snippets from the announcement messages:
    + mcl-05-321:
     This mainly adds 'transformation' functionality, which complements the
     label-value streaming stuff.  It means you can apply quite complex
     transformations on values, albeit only context-insensive transformations.
    + mcl-05-314:
     MCL can now read in label input in a simple line based format where
     each lines contains two labels and an optional value separated by
     whitespace.  Output clusters are returned as lines of tab-separated
     labels.  The BLAST parser can stream this format directly to mcl
     creating a very concise and easy to manage sequence clustering
     pipeline.  The mcl(1) manual now has a 'getting started' section
     with some examples.  New utility mcxload(1) with many custom options for
     reading in label data and transforming the associated numerical values,
     storing mappings in tab files and saving a graph in native mcl input
     format.
    + mcl-05-300:
     Important for mcxassemble users: Changed mcxassemble to pick the maximum
     between repeated entries by default.  Other noteworthy changes: mcxdump
     can now also be used to restrict tab files, and: Fixed mcxsubs bug,
     introduced in last release, where selections never materialize unless one
     mysteriously specifies --rand-merge.  No changes in mcl, only stuff done
     to the graph manipulation programs.
    + mcl-05-272:
     Major changes in clmimac, a noticeable change in mclblastline, a minor
     addition to mcxdeblast, improved dump functionality in mcl.  If you just
     use mcl there is little need for upgrading.
    mcl-05-272 adds some extra stuff to doc/mcl/examples/ .
    As always, read changelog for details.
  * debian/mcl-doc.doc-base.mcxload: added
  * debian/{compat,control,rules}: move from debhelper compatibility level 3
    to 4 (add ${misc:Depends} to Depends)
  * debian/copyright: new snailmail address of FSF.
  * debian/watch: make sure it doesn't match the symlink mcl-latest.tar.gz.
  * debian/rules, debian/mcl-doc.install: no longer install upstream TODO file:
    it's not useful for users.
  * debian/control: fix versioned conflicts syntax
  * debian/rules: make proper use of comments: don't clobber build output.
  * debian/control: Standards Version bumped from 3.6.1.0 to 3.6.2.0 (no
    changes needed).

 -- Joost van Baal <email address hidden>  Wed, 23 Nov 2005 16:36:39 +0100
Obsolete in breezy-release 
mcl (1:05-118-1) unstable; urgency=low


  * New stable upstream release: a lot faster on large graphs because a
    clunky input routine was fixed.
  * debian/rules: Make sure config.{guess,sub} are up to date.  (Upstream
    _does_ ship these.)
  * debian/mcl-doc.doc-base.mcl, debian/mcl-doc.doc-base.mclfaq: We are no
    longer shipping documentation in txt format.

 -- Joost van Baal <email address hidden>  Wed, 25 May 2005 08:09:54 +0200
Obsolete in hoary-release 
mcl (1:04-250-1) unstable; urgency=low


  * New upstream release.  (Missed mcl-04-230.)
  * watch: added, so that
    http://qa.debian.org/developer.php?gpg_key=969457F0 looks even
    more spiffy.

 -- Joost van Baal <email address hidden>  Wed, 08 Sep 2004 15:04:32 +0200
Obsolete in warty-release 
mcl (1:04-103-1) unstable; urgency=low


  * New upstream development release.  (Upstream has published six other
    development releases since 03-277.)
  * Splitted in mcl and mcl-doc binary packages.
  * No longer installs HTML documentation in plain text too.
  * Some manpages no longer register via doc-base; just the "major" ones
    do now.
  * Debian Policy compliance: bumped from Standards Version 3.5.9 to
    Standards-Version: 3.6.1.0: debian/rules now honors DEB_BUILD_OPTIONS.

 -- Joost van Baal <email address hidden>  Tue, 13 Apr 2004 07:59:47 +0200
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