RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_114-0~53~0.IS.08.04 python-lpbuildd_114-0~53~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 1 Jun 05:10:49 ntpdate[15997]: adjust time server 10.211.37.1 offset -0.000227 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '33b47ec220b19487c3e59c4c294045aecdd45759', '/home/buildd/filecache-default/e4b7082d2a3b0b950d5c0d7f3857ae0333e0db90'] Unpacking chroot for build 33b47ec220b19487c3e59c4c294045aecdd45759 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '33b47ec220b19487c3e59c4c294045aecdd45759'] Mounting chroot for build 33b47ec220b19487c3e59c4c294045aecdd45759 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '33b47ec220b19487c3e59c4c294045aecdd45759', 'deb http://ftpmaster.internal/ubuntu saucy main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-proposed main restricted universe multiverse'] Overriding sources.list in build-33b47ec220b19487c3e59c4c294045aecdd45759 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '33b47ec220b19487c3e59c4c294045aecdd45759', 'amd64'] Updating debian chroot for build 33b47ec220b19487c3e59c4c294045aecdd45759 Ign http://archive-team.internal saucy Release.gpg Get:1 http://ftpmaster.internal saucy Release.gpg [933 B] Get:2 http://ftpmaster.internal saucy-security Release.gpg [933 B] Get:3 http://ftpmaster.internal saucy-updates Release.gpg [933 B] Get:4 http://archive-team.internal saucy Release [728 B] Get:5 http://ftpmaster.internal saucy-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal saucy Release [40.8 kB] Get:7 http://ftpmaster.internal saucy-security Release [40.8 kB] Get:8 http://ftpmaster.internal saucy-updates Release [40.8 kB] Get:9 http://archive-team.internal saucy/main amd64 Packages Ign http://archive-team.internal saucy/main Translation-en Get:10 http://ftpmaster.internal saucy-proposed Release [40.8 kB] Get:11 http://ftpmaster.internal saucy/main amd64 Packages [1193 kB] Get:12 http://ftpmaster.internal saucy/restricted amd64 Packages [9655 B] Get:13 http://ftpmaster.internal saucy/universe amd64 Packages [5563 kB] Get:14 http://ftpmaster.internal saucy/multiverse amd64 Packages [134 kB] Get:15 http://ftpmaster.internal saucy/main Translation-en [688 kB] Get:16 http://ftpmaster.internal saucy/multiverse Translation-en [102 kB] Get:17 http://ftpmaster.internal saucy/restricted Translation-en [2767 B] Get:18 http://ftpmaster.internal saucy/universe Translation-en [3836 kB] Get:19 http://ftpmaster.internal saucy-security/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal saucy-security/restricted amd64 Packages [14 B] Get:21 http://ftpmaster.internal saucy-security/universe amd64 Packages [14 B] Get:22 http://ftpmaster.internal saucy-security/multiverse amd64 Packages [14 B] Get:23 http://ftpmaster.internal saucy-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal saucy-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal saucy-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal saucy-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal saucy-updates/main amd64 Packages [14 B] Get:28 http://ftpmaster.internal saucy-updates/restricted amd64 Packages [14 B] Get:29 http://ftpmaster.internal saucy-updates/universe amd64 Packages [14 B] Get:30 http://ftpmaster.internal saucy-updates/multiverse amd64 Packages [14 B] Get:31 http://ftpmaster.internal saucy-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal saucy-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal saucy-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal saucy-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal saucy-proposed/main amd64 Packages [60.2 kB] Get:36 http://ftpmaster.internal saucy-proposed/restricted amd64 Packages [14 B] Get:37 http://ftpmaster.internal saucy-proposed/universe amd64 Packages [163 kB] Get:38 http://ftpmaster.internal saucy-proposed/multiverse amd64 Packages [2824 B] Get:39 http://ftpmaster.internal saucy-proposed/main Translation-en [29.8 kB] Get:40 http://ftpmaster.internal saucy-proposed/multiverse Translation-en [2123 B] Get:41 http://ftpmaster.internal saucy-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal saucy-proposed/universe Translation-en [101 kB] Fetched 12.1 MB in 3s (3079 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: cpio cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base initscripts libasan0 libatomic1 libgcc-4.8-dev libgcc1 libgnutls26 libgomp1 libitm1 libldap-2.4-2 libplymouth2 libquadmath0 libstdc++-4.8-dev libstdc++6 libtsan0 libudev1 linux-libc-dev plymouth sysv-rc sysvinit-utils tar tzdata udev upstart 28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 30.7 MB of archives. After this operation, 117 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! tar libitm1 libgomp1 gcc-4.8-base libstdc++6 libasan0 libatomic1 libtsan0 libquadmath0 cpp-4.8 libstdc++-4.8-dev g++-4.8 gcc-4.8 libgcc-4.8-dev libgcc1 sysvinit-utils sysv-rc initscripts udev libudev1 upstart plymouth libplymouth2 libgnutls26 libldap-2.4-2 tzdata cpio linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main tar amd64 1.26+dfsg-6 [218 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libitm1 amd64 4.8.0-8ubuntu1 [37.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libgomp1 amd64 4.8.0-8ubuntu1 [27.0 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8-base amd64 4.8.0-8ubuntu1 [15.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++6 amd64 4.8.0-8ubuntu1 [327 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main libasan0 amd64 4.8.0-8ubuntu1 [76.0 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libatomic1 amd64 4.8.0-8ubuntu1 [10.3 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libtsan0 amd64 4.8.0-8ubuntu1 [118 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libquadmath0 amd64 4.8.0-8ubuntu1 [139 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main cpp-4.8 amd64 4.8.0-8ubuntu1 [5836 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++-4.8-dev amd64 4.8.0-8ubuntu1 [1746 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main g++-4.8 amd64 4.8.0-8ubuntu1 [8602 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8 amd64 4.8.0-8ubuntu1 [6607 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main libgcc-4.8-dev amd64 4.8.0-8ubuntu1 [2791 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main libgcc1 amd64 1:4.8.0-8ubuntu1 [43.3 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main sysvinit-utils amd64 2.88dsf-41ubuntu2 [63.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main sysv-rc all 2.88dsf-41ubuntu2 [39.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main initscripts amd64 2.88dsf-41ubuntu2 [29.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main udev amd64 202-0ubuntu11 [1048 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libudev1 amd64 202-0ubuntu11 [36.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main upstart amd64 1.8-0ubuntu3 [513 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main plymouth amd64 0.8.8-0ubuntu7 [130 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main libplymouth2 amd64 0.8.8-0ubuntu7 [99.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main libgnutls26 amd64 2.12.23-1ubuntu2 [461 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main libldap-2.4-2 amd64 2.4.31-1+nmu2ubuntu1 [186 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main tzdata all 2013c-2ubuntu1 [495 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main cpio amd64 2.11+dfsg-0.2ubuntu1 [109 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main linux-libc-dev amd64 3.9.0-3.8 [914 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.7 MB in 1s (29.6 MB/s) (Reading database ... 12011 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-5 (using .../tar_1.26+dfsg-6_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-6) ... (Reading database ... 12011 files and directories currently installed.) Preparing to replace libitm1:amd64 4.8.0-7ubuntu1 (using .../libitm1_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libitm1:amd64 ... Preparing to replace libgomp1:amd64 4.8.0-7ubuntu1 (using .../libgomp1_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libgomp1:amd64 ... Preparing to replace gcc-4.8-base:amd64 4.8.0-7ubuntu1 (using .../gcc-4.8-base_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.8-base:amd64 ... Setting up gcc-4.8-base:amd64 (4.8.0-8ubuntu1) ... (Reading database ... 12011 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.8.0-7ubuntu1 (using .../libstdc++6_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.8.0-8ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12011 files and directories currently installed.) Preparing to replace libasan0:amd64 4.8.0-7ubuntu1 (using .../libasan0_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libasan0:amd64 ... Preparing to replace libatomic1:amd64 4.8.0-7ubuntu1 (using .../libatomic1_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libatomic1:amd64 ... Preparing to replace libtsan0:amd64 4.8.0-7ubuntu1 (using .../libtsan0_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libtsan0:amd64 ... Preparing to replace libquadmath0:amd64 4.8.0-7ubuntu1 (using .../libquadmath0_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... Preparing to replace cpp-4.8 4.8.0-7ubuntu1 (using .../cpp-4.8_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace libstdc++-4.8-dev:amd64 4.8.0-7ubuntu1 (using .../libstdc++-4.8-dev_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libstdc++-4.8-dev:amd64 ... Preparing to replace g++-4.8 4.8.0-7ubuntu1 (using .../g++-4.8_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.0-7ubuntu1 (using .../gcc-4.8_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:amd64 4.8.0-7ubuntu1 (using .../libgcc-4.8-dev_4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libgcc-4.8-dev:amd64 ... Preparing to replace libgcc1:amd64 1:4.8.0-7ubuntu1 (using .../libgcc1_1%3a4.8.0-8ubuntu1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.8.0-8ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12011 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-41ubuntu1 (using .../sysvinit-utils_2.88dsf-41ubuntu2_amd64.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-41ubuntu1 (using .../sysv-rc_2.88dsf-41ubuntu2_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-41ubuntu1 (using .../initscripts_2.88dsf-41ubuntu2_amd64.deb) ... Unpacking replacement initscripts ... Preparing to replace udev 202-0ubuntu7 (using .../udev_202-0ubuntu11_amd64.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:amd64 202-0ubuntu7 (using .../libudev1_202-0ubuntu11_amd64.deb) ... Unpacking replacement libudev1:amd64 ... Preparing to replace upstart 1.8-0ubuntu2 (using .../upstart_1.8-0ubuntu3_amd64.deb) ... Unpacking replacement upstart ... Preparing to replace plymouth 0.8.8-0ubuntu6.1 (using .../plymouth_0.8.8-0ubuntu7_amd64.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2:amd64 0.8.8-0ubuntu6.1 (using .../libplymouth2_0.8.8-0ubuntu7_amd64.deb) ... Unpacking replacement libplymouth2:amd64 ... Preparing to replace libgnutls26:amd64 2.12.23-1ubuntu1 (using .../libgnutls26_2.12.23-1ubuntu2_amd64.deb) ... Unpacking replacement libgnutls26:amd64 ... Preparing to replace libldap-2.4-2:amd64 2.4.31-1ubuntu2 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu1_amd64.deb) ... Unpacking replacement libldap-2.4-2:amd64 ... Preparing to replace tzdata 2013b-1ubuntu1 (using .../tzdata_2013c-2ubuntu1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2013c-2ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jun 1 05:11:10 UTC 2013. Universal Time is now: Sat Jun 1 05:11:10 UTC 2013. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12005 files and directories currently installed.) Preparing to replace cpio 2.11+dfsg-0.1ubuntu1 (using .../cpio_2.11+dfsg-0.2ubuntu1_amd64.deb) ... Unpacking replacement cpio ... Preparing to replace linux-libc-dev:amd64 3.9.0-2.7 (using .../linux-libc-dev_3.9.0-3.8_amd64.deb) ... Unpacking replacement linux-libc-dev:amd64 ... Setting up libitm1:amd64 (4.8.0-8ubuntu1) ... Setting up libgomp1:amd64 (4.8.0-8ubuntu1) ... Setting up libasan0:amd64 (4.8.0-8ubuntu1) ... Setting up libatomic1:amd64 (4.8.0-8ubuntu1) ... Setting up libtsan0:amd64 (4.8.0-8ubuntu1) ... Setting up libquadmath0:amd64 (4.8.0-8ubuntu1) ... Setting up cpp-4.8 (4.8.0-8ubuntu1) ... Setting up libgcc-4.8-dev:amd64 (4.8.0-8ubuntu1) ... Setting up libstdc++-4.8-dev:amd64 (4.8.0-8ubuntu1) ... Setting up gcc-4.8 (4.8.0-8ubuntu1) ... Setting up g++-4.8 (4.8.0-8ubuntu1) ... Setting up libudev1:amd64 (202-0ubuntu11) ... Setting up libplymouth2:amd64 (0.8.8-0ubuntu7) ... Setting up libgnutls26:amd64 (2.12.23-1ubuntu2) ... Setting up libldap-2.4-2:amd64 (2.4.31-1+nmu2ubuntu1) ... Setting up cpio (2.11+dfsg-0.2ubuntu1) ... Setting up linux-libc-dev:amd64 (3.9.0-3.8) ... Setting up sysvinit-utils (2.88dsf-41ubuntu2) ... Setting up sysv-rc (2.88dsf-41ubuntu2) ... Setting up initscripts (2.88dsf-41ubuntu2) ... Setting up upstart (1.8-0ubuntu3) ... Installing new version of config file /etc/X11/Xsession.d/99upstart ... Installing new version of config file /etc/X11/Xsession.d/00upstart ... Setting up udev (202-0ubuntu11) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up plymouth (0.8.8-0ubuntu7) ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '33b47ec220b19487c3e59c4c294045aecdd45759', 'amd64', 'saucy-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=multiverse', 'mgltools-bhtree_1.5.7~rc1~cvs.20130519-1.dsc'] Initiating build 33b47ec220b19487c3e59c4c294045aecdd45759 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Automatic build of mgltools-bhtree_1.5.7~rc1~cvs.20130519-1 on roseapple by sbuild/amd64 1.170.5 Build started at 20130601-0511 ****************************************************************************** mgltools-bhtree_1.5.7~rc1~cvs.20130519-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6), python-numpy, swig (>= 1.3.20) Checking for already installed source dependencies... debhelper: missing python-all-dev: missing python-numpy: missing swig: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python-all-dev python-numpy swig Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libasprintf-dev libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev libffi6 libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-all python-dev python-minimal python2.7 python2.7-dev python2.7-minimal swig2.0 Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python-doc python-tk python-numpy-doc python-numpy-dbg python-nose gfortran python2.7-doc binfmt-support swig-doc swig-examples swig2.0-examples swig2.0-doc Recommended packages: curl wget lynx-cur libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libasprintf-dev libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev libffi6 libgettextpo-dev libgettextpo0 libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python2.7 python2.7-dev python2.7-minimal swig swig2.0 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 46.4 MB of archives. After this operation, 105 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libmagic1 libssl1.0.0 libffi6 libglib2.0-0 libasprintf0c2 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libunistring0 libgettextpo0 libgfortran3 libpython2.7-minimal mime-support libpython2.7-stdlib libpython2.7 libexpat1-dev libpython2.7-dev file gettext-base html2text libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf dh-apparmor debhelper libblas3 liblapack3 libpython-dev libpython-all-dev libpython-stdlib python2.7-minimal python2.7 python-minimal python python-all python2.7-dev python-dev python-all-dev python-numpy swig2.0 swig Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 amd64 2.1.0-3 [129 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 amd64 5.11-2ubuntu4 [170 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libssl1.0.0 amd64 1.0.1e-2ubuntu1 [1052 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 amd64 3.0.13-2ubuntu1 [19.5 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 amd64 2.37.0-0ubuntu2 [1020 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 amd64 0.18.1.1-10ubuntu3 [6864 B] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 amd64 1.2.3-1 [26.9 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 amd64 2.9.0+dfsg1-4ubuntu5 [692 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main groff-base amd64 1.22.2-3 [719 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils amd64 9.0.4ubuntu4 [202 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main man-db amd64 2.6.3-6 [637 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 amd64 0.6.8-2 [82.6 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 amd64 0.9.3-5build1 [430 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 amd64 0.18.1.1-10ubuntu3 [123 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main libgfortran3 amd64 4.8.0-8ubuntu1 [346 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-minimal amd64 2.7.5-1ubuntu2 [504 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-stdlib amd64 2.7.5-1ubuntu2 [2480 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7 amd64 2.7.5-1ubuntu2 [1353 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1-dev amd64 2.1.0-3 [213 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-dev amd64 2.7.5-1ubuntu2 [23.5 MB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main file amd64 5.11-2ubuntu4 [18.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base amd64 0.18.1.1-10ubuntu3 [77.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main html2text amd64 1.3.2a-15ubuntu3 [92.9 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev amd64 0.18.1.1-10ubuntu3 [4544 B] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev amd64 0.18.1.1-10ubuntu3 [164 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main gettext amd64 0.18.1.1-10ubuntu3 [1039 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu12 [8324 B] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20120909ubuntu3 [629 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main libblas3 amd64 1.2.20110419-5 [287 kB] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main liblapack3 amd64 3.4.2+dfsg-1 [4729 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/main libpython-dev amd64 2.7.4-0ubuntu1 [7612 B] Get:35 http://ftpmaster.internal/ubuntu/ saucy/main libpython-all-dev amd64 2.7.4-0ubuntu1 [942 B] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main libpython-stdlib amd64 2.7.4-0ubuntu1 [7542 B] Get:37 http://ftpmaster.internal/ubuntu/ saucy/main python2.7-minimal amd64 2.7.5-1ubuntu2 [1499 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/main python2.7 amd64 2.7.5-1ubuntu2 [188 kB] Get:39 http://ftpmaster.internal/ubuntu/ saucy/main python-minimal amd64 2.7.4-0ubuntu1 [30.8 kB] Get:40 http://ftpmaster.internal/ubuntu/ saucy/main python amd64 2.7.4-0ubuntu1 [169 kB] Get:41 http://ftpmaster.internal/ubuntu/ saucy/main python-all amd64 2.7.4-0ubuntu1 [924 B] Get:42 http://ftpmaster.internal/ubuntu/ saucy/main python2.7-dev amd64 2.7.5-1ubuntu2 [294 kB] Get:43 http://ftpmaster.internal/ubuntu/ saucy/main python-dev amd64 2.7.4-0ubuntu1 [1126 B] Get:44 http://ftpmaster.internal/ubuntu/ saucy/main python-all-dev amd64 2.7.4-0ubuntu1 [942 B] Get:45 http://ftpmaster.internal/ubuntu/ saucy/main python-numpy amd64 1:1.7.1-1ubuntu1 [2012 kB] Get:46 http://ftpmaster.internal/ubuntu/ saucy/main swig2.0 amd64 2.0.8-1ubuntu3 [1172 kB] Get:47 http://ftpmaster.internal/ubuntu/ saucy/main swig amd64 2.0.8-1ubuntu3 [8816 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.4 MB in 1s (24.0 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 12004 files and directories currently installed.) Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-3_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-2ubuntu4_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2ubuntu1_amd64.deb) ... Selecting previously unselected package libffi6:amd64. Unpacking libffi6:amd64 (from .../libffi6_3.0.13-2ubuntu1_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.37.0-0ubuntu2_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10ubuntu3_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.3-1_amd64.deb) ... 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Setting up bsdmainutils (9.0.4ubuntu4) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.3-6) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:amd64 (0.6.8-2) ... Setting up libunistring0:amd64 (0.9.3-5build1) ... Setting up libgettextpo0:amd64 (0.18.1.1-10ubuntu3) ... Setting up libgfortran3:amd64 (4.8.0-8ubuntu1) ... Setting up libpython2.7-minimal:amd64 (2.7.5-1ubuntu2) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython2.7-stdlib:amd64 (2.7.5-1ubuntu2) ... Setting up libpython2.7:amd64 (2.7.5-1ubuntu2) ... Setting up libexpat1-dev:amd64 (2.1.0-3) ... Setting up libpython2.7-dev:amd64 (2.7.5-1ubuntu2) ... Setting up file (5.11-2ubuntu4) ... Setting up gettext-base (0.18.1.1-10ubuntu3) ... Setting up html2text (1.3.2a-15ubuntu3) ... Setting up libasprintf-dev:amd64 (0.18.1.1-10ubuntu3) ... Setting up libgettextpo-dev:amd64 (0.18.1.1-10ubuntu3) ... Setting up gettext (0.18.1.1-10ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.0-0ubuntu12) ... Setting up debhelper (9.20120909ubuntu3) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.4.2+dfsg-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython-dev:amd64 (2.7.4-0ubuntu1) ... Setting up libpython-all-dev:amd64 (2.7.4-0ubuntu1) ... Setting up libpython-stdlib:amd64 (2.7.4-0ubuntu1) ... Setting up python2.7-minimal (2.7.5-1ubuntu2) ... Linking and byte-compiling packages for runtime python2.7... Setting up python2.7 (2.7.5-1ubuntu2) ... Setting up python-minimal (2.7.4-0ubuntu1) ... Setting up python (2.7.4-0ubuntu1) ... Setting up python-all (2.7.4-0ubuntu1) ... Setting up python2.7-dev (2.7.5-1ubuntu2) ... Setting up python-dev (2.7.4-0ubuntu1) ... Setting up python-all-dev (2.7.4-0ubuntu1) ... Setting up python-numpy (1:1.7.1-1ubuntu1) ... Setting up swig2.0 (2.0.8-1ubuntu3) ... Setting up swig (2.0.8-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-0ubuntu5 make_3.81-8.2ubuntu2 dpkg-dev_1.16.10ubuntu1 gcc-4.8_4.8.0-8ubuntu1 g++-4.8_4.8.0-8ubuntu1 binutils_2.23.2-2ubuntu1 libstdc++-4.8-dev_4.8.0-8ubuntu1 libstdc++6_4.8.0-8ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri May 31 17:26:37 2013 UTC using DSA key ID 54B99890 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mgltools-bhtree_1.5.7~rc1~cvs.20130519-1.dsc dpkg-source: info: extracting mgltools-bhtree in mgltools-bhtree-1.5.7~rc1~cvs.20130519 dpkg-source: info: unpacking mgltools-bhtree_1.5.7~rc1~cvs.20130519.orig.tar.gz dpkg-source: info: unpacking mgltools-bhtree_1.5.7~rc1~cvs.20130519-1.debian.tar.gz dpkg-buildpackage: source package mgltools-bhtree dpkg-buildpackage: source version 1.5.7~rc1~cvs.20130519-1 dpkg-source --before-build mgltools-bhtree-1.5.7~rc1~cvs.20130519 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean --with python2 dh_testdir dh_auto_clean running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519' dh_clean find . -name CVS -a -type d| xargs -r rm -r rm -rf build build-stamp debian/Pmv rm -rf debian/tmpbuild rm -rf bhtree/bhtreelib.py bhtree/bhtreelib_wrap.c make[1]: Leaving directory `/build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519' debian/rules build-arch dh build-arch --with python2 dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519' for i in 2.7; do \ python$i setup.py install --install-platlib=`pwd`/debian/tmpbuild; \ done running install running build running build_ext building '_bhtreelib' extension swigging bhtree/bhtreelib.i to bhtree/bhtreelib_wrap.c swig -python -o bhtree/bhtreelib_wrap.c bhtree/bhtreelib.i bhtree/bhtreelib.i:13: Warning 124: Specifying the language name in %typemap is deprecated - use #ifdef SWIG instead. bhtree/bhtreelib.i:206: Warning 521: Illegal destructor name BHtree::~BHTree(). Ignored. creating build creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/bhtree creating build/temp.linux-x86_64-2.7/src x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I./src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c bhtree/bhtreelib_wrap.c -o build/temp.linux-x86_64-2.7/bhtree/bhtreelib_wrap.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15, from bhtree/bhtreelib_wrap.c:2992: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ bhtree/bhtreelib_wrap.c: In function 'contiguous_typed_array': bhtree/bhtreelib_wrap.c:3038:27: warning: format '%d' expects argument of type 'int', but argument 4 has type 'npy_intp' [-Wformat=] i, arr->dimensions[i], expectdims[i]); ^ bhtree/bhtreelib_wrap.c:2997:20: warning: unused variable 'itemsize' [-Wunused-variable] int i, numitems, itemsize; ^ bhtree/bhtreelib_wrap.c:2997:10: warning: unused variable 'numitems' [-Wunused-variable] int i, numitems, itemsize; ^ bhtree/bhtreelib_wrap.c: In function 'l_output_helper2': bhtree/bhtreelib_wrap.c:3053:17: warning: unused variable 'o3' [-Wunused-variable] PyObject* o3; ^ bhtree/bhtreelib_wrap.c: In function 'contiguous_typed_array1': bhtree/bhtreelib_wrap.c:3095:12: warning: comparison of distinct pointer types lacks a cast [enabled by default] if (arr!=obj) { ^ bhtree/bhtreelib_wrap.c:3130:27: warning: format '%d' expects argument of type 'int', but argument 4 has type 'npy_intp' [-Wformat=] i, arr->dimensions[i], expectdims[i]); ^ bhtree/bhtreelib_wrap.c:3080:20: warning: unused variable 'itemsize' [-Wunused-variable] int i, numitems, itemsize; ^ bhtree/bhtreelib_wrap.c:3080:10: warning: unused variable 'numitems' [-Wunused-variable] int i, numitems, itemsize; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHpoint_x_set': bhtree/bhtreelib_wrap.c:3684:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_xmin_set': bhtree/bhtreelib_wrap.c:4353:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_xmax_set': bhtree/bhtreelib_wrap.c:4420:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_closePoints': bhtree/bhtreelib_wrap.c:4872:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_closePointsDist': bhtree/bhtreelib_wrap.c:4955:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_closePointsDist2': bhtree/bhtreelib_wrap.c:5063:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_closestPointsArrayDist2': bhtree/bhtreelib_wrap.c:5455:8: warning: assignment from incompatible pointer type [enabled by default] arg2 = (float *)xyzarr2->data; ^ bhtree/bhtreelib_wrap.c:5457:8: warning: assignment from incompatible pointer type [enabled by default] arg4 = (int *)malloc(arg3 * sizeof(int)); ^ bhtree/bhtreelib_wrap.c: In function '_wrap_findClosestAtomsDist2': bhtree/bhtreelib_wrap.c:6230:8: warning: assignment from incompatible pointer type [enabled by default] arg2 = (float *)xyzarr2->data; ^ bhtree/bhtreelib_wrap.c:6232:8: warning: assignment from incompatible pointer type [enabled by default] arg4 = (int *)malloc(arg3 * sizeof(int)); ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHPoint_Pos_set': bhtree/bhtreelib_wrap.c:6346:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHNode_xmin_set': bhtree/bhtreelib_wrap.c:7169:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHNode_xmax_set': bhtree/bhtreelib_wrap.c:7236:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHTree_xmin_set': bhtree/bhtreelib_wrap.c:7604:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHTree_xmax_set': bhtree/bhtreelib_wrap.c:7671:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHTree_ClosePoints': bhtree/bhtreelib_wrap.c:7978:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHTree_ClosePointsDist2': bhtree/bhtreelib_wrap.c:8061:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_RBHTree_xmin_set': bhtree/bhtreelib_wrap.c:8421:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_RBHTree_xmax_set': bhtree/bhtreelib_wrap.c:8488:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_RBHTree_ClosePoints': bhtree/bhtreelib_wrap.c:9030:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_RBHTree_ClosePointsDist2': bhtree/bhtreelib_wrap.c:9113:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_RBHTree_MoveRBHPoint': bhtree/bhtreelib_wrap.c:9316:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_FindTBHNodeUp': bhtree/bhtreelib_wrap.c:9425:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_MoveTBHPoint': bhtree/bhtreelib_wrap.c:9550:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_MoveRBHPoint': bhtree/bhtreelib_wrap.c:10205:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ bhtree/bhtreelib_wrap.c: In function 'SWIG_InitializeModule': bhtree/bhtreelib_wrap.c:10721:3: warning: statement with no effect [-Wunused-value] (void *)clientdata; ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_closePoints': bhtree/bhtreelib_wrap.c:4915:6: warning: 'array4' may be used uninitialized in this function [-Wmaybe-uninitialized] if (array4) ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_closePointsDist': bhtree/bhtreelib_wrap.c:5019:6: warning: 'array4' may be used uninitialized in this function [-Wmaybe-uninitialized] if (array4) ^ bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_closePointsDist2': bhtree/bhtreelib_wrap.c:5127:6: warning: 'array4' may be used uninitialized in this function [-Wmaybe-uninitialized] if (array4) ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHTree_ClosePoints': bhtree/bhtreelib_wrap.c:8021:6: warning: 'array4' may be used uninitialized in this function [-Wmaybe-uninitialized] if (array4) ^ bhtree/bhtreelib_wrap.c: In function '_wrap_TBHTree_ClosePointsDist2': bhtree/bhtreelib_wrap.c:8125:6: warning: 'array4' may be used uninitialized in this function [-Wmaybe-uninitialized] if (array4) ^ bhtree/bhtreelib_wrap.c: In function '_wrap_RBHTree_ClosePoints': bhtree/bhtreelib_wrap.c:9073:6: warning: 'array4' may be used uninitialized in this function [-Wmaybe-uninitialized] if (array4) ^ bhtree/bhtreelib_wrap.c: In function '_wrap_RBHTree_ClosePointsDist2': bhtree/bhtreelib_wrap.c:9177:6: warning: 'array4' may be used uninitialized in this function [-Wmaybe-uninitialized] if (array4) ^ In file included from /usr/include/python2.7/Python.h:80:0, from bhtree/bhtreelib_wrap.c:125: bhtree/bhtreelib_wrap.c: In function '_wrap_BHtree_closestPointsArrayDist2': /usr/include/python2.7/object.h:772:28: warning: 'xyzarr2' may be used uninitialized in this function [-Wmaybe-uninitialized] --((PyObject*)(op))->ob_refcnt != 0) \ ^ bhtree/bhtreelib_wrap.c:5430:18: note: 'xyzarr2' was declared here PyArrayObject *xyzarr2 ; ^ In file included from /usr/include/python2.7/Python.h:80:0, from bhtree/bhtreelib_wrap.c:125: bhtree/bhtreelib_wrap.c: In function '_wrap_findClosestAtomsDist2': /usr/include/python2.7/object.h:772:28: warning: 'xyzarr2' may be used uninitialized in this function [-Wmaybe-uninitialized] --((PyObject*)(op))->ob_refcnt != 0) \ ^ bhtree/bhtreelib_wrap.c:6205:18: note: 'xyzarr2' was declared here PyArrayObject *xyzarr2 ; ^ x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I./src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/bhtree.c -o build/temp.linux-x86_64-2.7/src/bhtree.o src/bhtree.c: In function 'findBHcloseAtoms': src/bhtree.c:413:9: warning: unused variable 'n' [-Wunused-variable] int i,n; ^ creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/bhtree x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/bhtree/bhtreelib_wrap.o build/temp.linux-x86_64-2.7/src/bhtree.o -o build/lib.linux-x86_64-2.7/bhtree/_bhtreelib.so running build_py copying bhtree/__init__.py -> build/lib.linux-x86_64-2.7/bhtree copying bhtree/bhtreelib.py -> build/lib.linux-x86_64-2.7/bhtree creating build/lib.linux-x86_64-2.7/bhtree/Tests copying bhtree/Tests/test.py -> build/lib.linux-x86_64-2.7/bhtree/Tests copying bhtree/Tests/cv_crd_and_rad.py -> build/lib.linux-x86_64-2.7/bhtree/Tests copying bhtree/Tests/__init__.py -> build/lib.linux-x86_64-2.7/bhtree/Tests copying bhtree/Tests/test_dependencies.py -> build/lib.linux-x86_64-2.7/bhtree/Tests copying bhtree/Tests/crn_crd_and_rad.py -> build/lib.linux-x86_64-2.7/bhtree/Tests copying bhtree/Tests/crn_crd.py -> build/lib.linux-x86_64-2.7/bhtree/Tests running install_lib creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree copying build/lib.linux-x86_64-2.7/bhtree/__init__.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree copying build/lib.linux-x86_64-2.7/bhtree/_bhtreelib.so -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/test.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/cv_crd_and_rad.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/__init__.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/test_dependencies.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/crn_crd_and_rad.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/crn_crd.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/bhtreelib.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree byte-compiling /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/__init__.py to __init__.pyc byte-compiling /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests/test.py to test.pyc byte-compiling /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests/cv_crd_and_rad.py to cv_crd_and_rad.pyc byte-compiling /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests/__init__.py to __init__.pyc byte-compiling /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests/test_dependencies.py to test_dependencies.pyc byte-compiling /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests/crn_crd_and_rad.py to crn_crd_and_rad.pyc byte-compiling /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/Tests/crn_crd.py to crn_crd.pyc byte-compiling /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree/bhtreelib.py to bhtreelib.pyc running install_egg_info Writing /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/tmpbuild/bhtree-1.5.6.egg-info make[1]: Leaving directory `/build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a running install running build running build_ext running build_py running install_lib creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7 creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree copying build/lib.linux-x86_64-2.7/bhtree/__init__.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree copying build/lib.linux-x86_64-2.7/bhtree/_bhtreelib.so -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree creating /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/test.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/cv_crd_and_rad.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/__init__.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/test_dependencies.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/crn_crd_and_rad.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/Tests/crn_crd.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree/Tests copying build/lib.linux-x86_64-2.7/bhtree/bhtreelib.py -> /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree running install_egg_info Writing /build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519/debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree-1.5.6.egg-info debian/rules override_dh_install make[1]: Entering directory `/build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519' dh_install dh_numpy make[1]: Leaving directory `/build/buildd/mgltools-bhtree-1.5.7~rc1~cvs.20130519' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_python2 -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: mgltools-bhtree dh_strip debug symbol extraction: packages to act on: mgltools-bhtree dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `mgltools-bhtree-dbgsym' in `../mgltools-bhtree-dbgsym_1.5.7~rc1~cvs.20130519-1_amd64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mgltools-bhtree/usr/lib/python2.7/dist-packages/bhtree/_bhtreelib.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package mgltools-bhtree: unused substitution variable ${python:Versions} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing mgltools-bhtree (in debian/mgltools-bhtree); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mgltools-bhtree/DEBIAN/control, package mgltools-bhtree, directory debian/mgltools-bhtree pkgstripfiles: Truncating usr/share/doc/mgltools-bhtree/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package mgltools-bhtree took 0 s dpkg-deb: warning: 'debian/mgltools-bhtree/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `mgltools-bhtree' in `../mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mgltools-bhtree-1.5.7~rc1~cvs.20130519 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20130601-0511 Publishing debug debs. chroot-autobuild/build/buildd/mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_amd64.deb: new debian package, version 2.0. size 66426 bytes: control archive= 1379 bytes. 840 bytes, 18 lines control 1099 bytes, 14 lines md5sums 165 bytes, 9 lines * postinst #!/bin/sh 267 bytes, 14 lines * prerm #!/bin/sh Package: mgltools-bhtree Version: 1.5.7~rc1~cvs.20130519-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 296 Depends: libc6 (>= 2.14), python-numpy (>= 1:1.7-0~b1), python-numpy-abi9, python (>= 2.7.1-0ubuntu2), python (<< 2.8) Enhances: autodocktools Section: non-free/science Priority: optional Homepage: http://mgltools.scripps.edu/ Description: Bhtree library extension module This package is part of the mgltools set of Python libraries which provide an infrastructure for the analysis of protein structures and their docking of chemical compounds. . Python binding for looking Barnes-Hut tree code used for finding neighboring points (e.g. when building bonds by distance). chroot-autobuild/build/buildd/mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_amd64.deb: drwxr-xr-x root/root 0 2013-06-01 05:11 ./ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/share/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/share/pyshared/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/share/pyshared/bhtree/ -rw-r--r-- root/root 125 2006-03-09 22:14 ./usr/share/pyshared/bhtree/__init__.py drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/share/pyshared/bhtree/Tests/ -rw-r--r-- root/root 10030 2010-03-12 22:32 ./usr/share/pyshared/bhtree/Tests/test.py -rw-r--r-- root/root 2658 2004-06-17 19:53 ./usr/share/pyshared/bhtree/Tests/cv_crd_and_rad.py -rw-r--r-- root/root 1 2004-06-17 19:53 ./usr/share/pyshared/bhtree/Tests/__init__.py -rw-r--r-- root/root 844 2006-03-15 21:38 ./usr/share/pyshared/bhtree/Tests/test_dependencies.py -rw-r--r-- root/root 14800 2004-06-17 19:53 ./usr/share/pyshared/bhtree/Tests/crn_crd_and_rad.py -rw-r--r-- root/root 10944 2004-06-17 19:53 ./usr/share/pyshared/bhtree/Tests/crn_crd.py -rw-r--r-- root/root 25425 2013-06-01 05:11 ./usr/share/pyshared/bhtree/bhtreelib.py -rw-r--r-- root/root 283 2013-06-01 05:11 ./usr/share/pyshared/bhtree-1.5.6.egg-info drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/share/doc/mgltools-bhtree/ -rw-r--r-- root/root 923 2005-06-28 21:06 ./usr/share/doc/mgltools-bhtree/README -rw-r--r-- root/root 4303 2013-05-31 17:09 ./usr/share/doc/mgltools-bhtree/copyright -rw-r--r-- root/root 1417 2011-04-26 14:00 ./usr/share/doc/mgltools-bhtree/README.Debian -rw-r--r-- root/root 841 2013-06-01 05:11 ./usr/share/doc/mgltools-bhtree/changelog.Debian.gz drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/lib/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/lib/pyshared/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/lib/pyshared/python2.7/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/lib/pyshared/python2.7/bhtree/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/ -rw-r--r-- root/root 158928 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/_bhtreelib.so drwxr-xr-x root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/Tests/ lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/pyshared/python2.7/bhtree/_bhtreelib.so -> ../../../python2.7/dist-packages/bhtree/_bhtreelib.so lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/__init__.py -> ../../../../share/pyshared/bhtree/__init__.py lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/Tests/test.py -> ../../../../../share/pyshared/bhtree/Tests/test.py lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/Tests/cv_crd_and_rad.py -> ../../../../../share/pyshared/bhtree/Tests/cv_crd_and_rad.py lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/Tests/__init__.py -> ../../../../../share/pyshared/bhtree/Tests/__init__.py lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/Tests/test_dependencies.py -> ../../../../../share/pyshared/bhtree/Tests/test_dependencies.py lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/Tests/crn_crd_and_rad.py -> ../../../../../share/pyshared/bhtree/Tests/crn_crd_and_rad.py lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/Tests/crn_crd.py -> ../../../../../share/pyshared/bhtree/Tests/crn_crd.py lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree/bhtreelib.py -> ../../../../share/pyshared/bhtree/bhtreelib.py lrwxrwxrwx root/root 0 2013-06-01 05:11 ./usr/lib/python2.7/dist-packages/bhtree-1.5.6.egg-info -> ../../../share/pyshared/bhtree-1.5.6.egg-info mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_amd64.changes: Format: 1.8 Date: Sun, 19 May 2013 12:00:00 +0200 Source: mgltools-bhtree Binary: mgltools-bhtree Architecture: amd64 Version: 1.5.7~rc1~cvs.20130519-1 Distribution: saucy-proposed Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Thorsten Alteholz Description: mgltools-bhtree - Bhtree library extension module Changes: mgltools-bhtree (1.5.7~rc1~cvs.20130519-1) unstable; urgency=low . * New upstream version. * debian/control: remove DM-Upload-Allowed * debian/copyright: add permission for debian to distribute mgltools Checksums-Sha1: 7c87fdf8c50a43f87df2acb11264ad70130f13f2 66426 mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_amd64.deb Checksums-Sha256: ef667a773691b48c405ed50c58cb991bb5e85458159c1247ae8ad419975792d7 66426 mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_amd64.deb Files: 83d0559044e6e0348a51c2968c76a806 66426 non-free/science optional mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20130601-0511 Build needed 00:00:10, 3500k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '33b47ec220b19487c3e59c4c294045aecdd45759'] Scanning for processes to kill in build /home/buildd/build-33b47ec220b19487c3e59c4c294045aecdd45759/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '33b47ec220b19487c3e59c4c294045aecdd45759'] Unmounting chroot for build 33b47ec220b19487c3e59c4c294045aecdd45759... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '33b47ec220b19487c3e59c4c294045aecdd45759'] Removing build 33b47ec220b19487c3e59c4c294045aecdd45759