RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux toyol 3.2.0-54-generic #82-Ubuntu SMP Tue Sep 10 20:08:42 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.2. Syncing the system clock with the buildd NTP service... 29 Apr 13:34:16 ntpdate[7492]: adjust time server 10.211.37.1 offset -0.000314 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5959360', '/home/buildd/filecache-default/f58d997572ec5fe0b089dc84b4b2302dad127be0'] Unpacking chroot for build PACKAGEBUILD-5959360 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5959360'] Mounting chroot for build PACKAGEBUILD-5959360 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5959360', 'deb http://ftpmaster.internal/ubuntu utopic main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu utopic-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu utopic-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5959360 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5959360', 'i386'] Updating debian chroot for build PACKAGEBUILD-5959360 Ign http://ftpmaster.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://ftpmaster.internal utopic-updates InRelease Ign http://ftpmaster.internal utopic-proposed InRelease Get:1 http://ftpmaster.internal utopic Release.gpg [933 B] Get:2 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:3 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic Release [58.5 kB] Get:6 http://ftpmaster.internal utopic-security Release [58.5 kB] Get:7 http://ftpmaster.internal utopic-updates Release [58.5 kB] Get:8 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Get:9 http://ftpmaster.internal utopic/main i386 Packages [1368 kB] Get:10 http://ftpmaster.internal utopic/restricted i386 Packages [13.4 kB] Get:11 http://ftpmaster.internal utopic/universe i386 Packages [5950 kB] Get:12 http://ftpmaster.internal utopic/multiverse i386 Packages [135 kB] Get:13 http://ftpmaster.internal utopic/main Translation-en [770 kB] Get:14 http://ftpmaster.internal utopic/multiverse Translation-en [102 kB] Get:15 http://ftpmaster.internal utopic/restricted Translation-en [3457 B] Get:16 http://ftpmaster.internal utopic/universe Translation-en [4139 kB] Get:17 http://ftpmaster.internal utopic-security/main i386 Packages [14 B] Get:18 http://ftpmaster.internal utopic-security/restricted i386 Packages [14 B] Get:19 http://ftpmaster.internal utopic-security/universe i386 Packages [14 B] Get:20 http://ftpmaster.internal utopic-security/multiverse i386 Packages [14 B] Get:21 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:22 http://ftpmaster.internal utopic-security/multiverse Translation-en [14 B] Get:23 http://ftpmaster.internal utopic-security/restricted Translation-en [14 B] Get:24 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:25 http://ftpmaster.internal utopic-updates/main i386 Packages [14 B] Get:26 http://ftpmaster.internal utopic-updates/restricted i386 Packages [14 B] Get:27 http://ftpmaster.internal utopic-updates/universe i386 Packages [14 B] Get:28 http://ftpmaster.internal utopic-updates/multiverse i386 Packages [14 B] Get:29 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:30 http://ftpmaster.internal utopic-updates/multiverse Translation-en [14 B] Get:31 http://ftpmaster.internal utopic-updates/restricted Translation-en [14 B] Get:32 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:33 http://ftpmaster.internal utopic-proposed/main i386 Packages [37.5 kB] Get:34 http://ftpmaster.internal utopic-proposed/restricted i386 Packages [14 B] Get:35 http://ftpmaster.internal utopic-proposed/universe i386 Packages [247 kB] Get:36 http://ftpmaster.internal utopic-proposed/multiverse i386 Packages [5364 B] Get:37 http://ftpmaster.internal utopic-proposed/main Translation-en [20.8 kB] Get:38 http://ftpmaster.internal utopic-proposed/multiverse Translation-en [5469 B] Get:39 http://ftpmaster.internal utopic-proposed/restricted Translation-en [14 B] Get:40 http://ftpmaster.internal utopic-proposed/universe Translation-en [150 kB] Fetched 13.2 MB in 7s (1790 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: librtmp0 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: libhogweed2 libnettle4 librtmp1 The following packages will be upgraded: advancecomp apt apt-transport-https base-files bash binutils cpp-4.8 debconf dpkg dpkg-dev findutils g++-4.8 gcc-4.8 gcc-4.8-base gcc-4.9-base grep iproute2 kmod libapt-pkg4.12 libasan0 libatomic1 libcurl3-gnutls libdpkg-perl libdrm2 libgcc-4.8-dev libgcc1 libgomp1 libitm1 libjson-c2 libjson0 libkmod2 libp11-kit0 libpcre3 libquadmath0 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libslang2 libstdc++-4.8-dev libstdc++6 libtimedate-perl libudev1 module-init-tools patch tar udev 48 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 28.5 MB of archives. After this operation, 1572 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main base-files i386 7.2ubuntu6 [68.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main bash i386 4.3-7ubuntu1 [548 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main dpkg i386 1.17.8ubuntu1 [1974 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main findutils i386 4.4.2-8 [237 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main grep i386 2.18-2 [158 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main tar i386 1.27.1-2 [195 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.9-base i386 4.9.0-1ubuntu3 [16.4 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main libgcc1 i386 1:4.9.0-1ubuntu3 [48.2 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++6 i386 4.9.0-1ubuntu3 [280 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libapt-pkg4.12 i386 1.0.2ubuntu2 [640 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main apt i386 1.0.2ubuntu2 [955 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main debconf all 1.5.53ubuntu1 [144 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main libpcre3 i386 1:8.31-5ubuntu1 [182 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main libselinux1 i386 2.2.2-1ubuntu1 [57.9 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage-common all 2.2-1ubuntu1 [6344 B] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage1 i386 2.2-1ubuntu1 [68.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main libslang2 i386 2.2.4-16ubuntu1 [391 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main libp11-kit0 i386 0.20.2-5 [71.6 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main libdrm2 i386 2.4.53-1 [23.4 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libjson-c2 i386 0.11-4ubuntu1 [22.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 i386 16-2ubuntu3 [40.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main udev i386 204-10ubuntu1 [737 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libudev1 i386 204-10ubuntu1 [39.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main kmod i386 16-2ubuntu3 [86.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 16-2ubuntu3 [2080 B] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libnettle4 i386 2.7.1-2 [105 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libhogweed2 i386 2.7.1-2 [123 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic-proposed/main librtmp1 i386 2.4+20131018.git79459a2-2 [53.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3-gnutls i386 7.35.0-1ubuntu3 [166 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-2 i386 2.1.26.dfsg1-9 [47.5 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-modules-db i386 2.1.26.dfsg1-9 [14.1 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libitm1 i386 4.9.0-1ubuntu3 [31.7 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/main libgomp1 i386 4.9.0-1ubuntu3 [39.3 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 i386 4.8.2-21ubuntu1 [4812 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev i386 4.8.2-21ubuntu1 [1046 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 i386 4.8.2-21ubuntu1 [4890 kB] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 i386 4.8.2-21ubuntu1 [4446 kB] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main binutils i386 2.24.51.20140425-0ubuntu2 [2137 kB] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main libatomic1 i386 4.9.0-1ubuntu3 [10.2 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main libquadmath0 i386 4.9.0-1ubuntu3 [194 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev i386 4.8.2-21ubuntu1 [1735 kB] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main libasan0 i386 4.8.2-21ubuntu1 [64.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base i386 4.8.2-21ubuntu1 [15.6 kB] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main iproute2 i386 3.14.0-1 [406 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main libjson0 i386 0.11-4ubuntu1 [1144 B] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main apt-transport-https i386 1.0.2ubuntu2 [25.5 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main advancecomp i386 1.19-1 [152 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main libtimedate-perl all 2.3000-2 [37.5 kB] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main dpkg-dev all 1.17.8ubuntu1 [726 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main libdpkg-perl all 1.17.8ubuntu1 [181 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main patch i386 2.7.1-5 [89.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.5 MB in 1s (15.6 MB/s) (Reading database ... 11778 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu6_i386.deb ... Unpacking base-files (7.2ubuntu6) over (7.2ubuntu5) ... Setting up base-files (7.2ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11778 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu1_i386.deb ... Unpacking bash (4.3-7ubuntu1) over (4.3-6ubuntu1) ... Setting up bash (4.3-7ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11778 files and directories currently installed.) Preparing to unpack .../dpkg_1.17.8ubuntu1_i386.deb ... Unpacking dpkg (1.17.8ubuntu1) over (1.17.5ubuntu5) ... Setting up dpkg (1.17.8ubuntu1) ... 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Selecting previously unselected package libnettle4:i386. Preparing to unpack .../libnettle4_2.7.1-2_i386.deb ... Unpacking libnettle4:i386 (2.7.1-2) ... Selecting previously unselected package libhogweed2:i386. Preparing to unpack .../libhogweed2_2.7.1-2_i386.deb ... Unpacking libhogweed2:i386 (2.7.1-2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../librtmp1_2.4+20131018.git79459a2-2_i386.deb ... Unpacking librtmp1:i386 (2.4+20131018.git79459a2-2) ... Preparing to unpack .../libcurl3-gnutls_7.35.0-1ubuntu3_i386.deb ... Unpacking libcurl3-gnutls:i386 (7.35.0-1ubuntu3) over (7.35.0-1ubuntu2) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-9_i386.deb ... Unpacking libsasl2-2:i386 (2.1.26.dfsg1-9) over (2.1.25.dfsg1-17build1) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-9_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.26.dfsg1-9) over (2.1.25.dfsg1-17build1) ... Preparing to unpack .../libitm1_4.9.0-1ubuntu3_i386.deb ... 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Unpacking advancecomp (1.19-1) over (1.18-1) ... Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) over (2.3000-1) ... Preparing to unpack .../dpkg-dev_1.17.8ubuntu1_all.deb ... Unpacking dpkg-dev (1.17.8ubuntu1) over (1.17.5ubuntu5) ... Preparing to unpack .../libdpkg-perl_1.17.8ubuntu1_all.deb ... Unpacking libdpkg-perl (1.17.8ubuntu1) over (1.17.5ubuntu5) ... Preparing to unpack .../patch_2.7.1-5_i386.deb ... Unpacking patch (2.7.1-5) over (2.7.1-4) ... Setting up libp11-kit0:i386 (0.20.2-5) ... Setting up libdrm2:i386 (2.4.53-1) ... Setting up libjson-c2:i386 (0.11-4ubuntu1) ... Setting up libkmod2:i386 (16-2ubuntu3) ... Setting up libudev1:i386 (204-10ubuntu1) ... Setting up udev (204-10ubuntu1) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udev-finish.conf ... Installing new version of config file /etc/modprobe.d/fbdev-blacklist.conf ... invoke-rc.d: policy-rc.d denied execution of restart. update-initramfs: deferring update (trigger activated) Setting up kmod (16-2ubuntu3) ... Installing new version of config file /etc/init.d/kmod ... Setting up module-init-tools (16-2ubuntu3) ... Setting up libnettle4:i386 (2.7.1-2) ... Setting up libhogweed2:i386 (2.7.1-2) ... Setting up librtmp1:i386 (2.4+20131018.git79459a2-2) ... Setting up libcurl3-gnutls:i386 (7.35.0-1ubuntu3) ... Setting up libsasl2-modules-db:i386 (2.1.26.dfsg1-9) ... Setting up libsasl2-2:i386 (2.1.26.dfsg1-9) ... Setting up libitm1:i386 (4.9.0-1ubuntu3) ... Setting up libgomp1:i386 (4.9.0-1ubuntu3) ... Setting up gcc-4.8-base:i386 (4.8.2-21ubuntu1) ... Setting up cpp-4.8 (4.8.2-21ubuntu1) ... Setting up binutils (2.24.51.20140425-0ubuntu2) ... Setting up libatomic1:i386 (4.9.0-1ubuntu3) ... Setting up libasan0:i386 (4.8.2-21ubuntu1) ... Setting up libquadmath0:i386 (4.9.0-1ubuntu3) ... Setting up libgcc-4.8-dev:i386 (4.8.2-21ubuntu1) ... Setting up gcc-4.8 (4.8.2-21ubuntu1) ... Setting up libstdc++-4.8-dev:i386 (4.8.2-21ubuntu1) ... Setting up g++-4.8 (4.8.2-21ubuntu1) ... Setting up iproute2 (3.14.0-1) ... Setting up libjson0:i386 (0.11-4ubuntu1) ... Setting up apt-transport-https (1.0.2ubuntu2) ... Setting up advancecomp (1.19-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libdpkg-perl (1.17.8ubuntu1) ... Setting up patch (2.7.1-5) ... Setting up dpkg-dev (1.17.8ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Processing triggers for initramfs-tools (0.103ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5959360', 'i386', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=multiverse', 'mgltools-geomutils_1.5.7~rc1+cvs.20140424-1.dsc'] Initiating build PACKAGEBUILD-5959360 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-54-generic #82-Ubuntu SMP Tue Sep 10 20:08:42 UTC 2013 i686 Automatic build of mgltools-geomutils_1.5.7~rc1+cvs.20140424-1 on toyol by sbuild/i386 1.170.5 Build started at 20140429-1334 ****************************************************************************** mgltools-geomutils_1.5.7~rc1+cvs.20140424-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6), swig, python-numpy Checking for already installed source dependencies... debhelper: missing python-all-dev: missing swig: missing python-numpy: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python-all-dev swig python-numpy Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: librtmp0 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libunistring0 libxml2 man-db mime-support po-debconf python python-all python-dev python-minimal python2.7 python2.7-dev python2.7-minimal swig2.0 Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff less www-browser libmail-box-perl python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc python2.7-doc binfmt-support swig-doc swig-examples swig2.0-examples swig2.0-doc Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libunistring0 libxml2 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python2.7 python2.7-dev python2.7-minimal swig swig2.0 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 37.2 MB of archives. After this operation, 94.1 MB of additional disk space will be used. 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(Reading database ... 11786 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_i386.deb ... Unpacking libexpat1:i386 (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu3_i386.deb ... Unpacking libmagic1:i386 (1:5.14-2ubuntu3) ... Selecting previously unselected package libasprintf0c2:i386. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_i386.deb ... Unpacking libasprintf0c2:i386 (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../libglib2.0-0_2.40.0-3_i386.deb ... Unpacking libglib2.0-0:i386 (2.40.0-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../libpipeline1_1.3.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.3.0-1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu4_i386.deb ... 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Setting up libasprintf0c2:i386 (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:i386 (2.40.0-3) ... No schema files found: doing nothing. Setting up libpipeline1:i386 (1.3.0-1) ... Setting up libxml2:i386 (2.9.1+dfsg1-3ubuntu4) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:i386 (0.6.8-2ubuntu1) ... Setting up libgfortran3:i386 (4.9.0-1ubuntu3) ... Setting up libpython2.7-minimal:i386 (2.7.6-8) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython2.7-stdlib:i386 (2.7.6-8) ... Setting up libpython2.7:i386 (2.7.6-8) ... Setting up libexpat1-dev:i386 (2.1.0-4ubuntu1) ... Setting up libpython2.7-dev:i386 (2.7.6-8) ... Setting up libunistring0:i386 (0.9.3-5ubuntu3) ... Setting up python2.7-minimal (2.7.6-8) ... Linking and byte-compiling packages for runtime python2.7... Setting up file (1:5.14-2ubuntu3) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.95~2430-0ubuntu5) ... Setting up debhelper (9.20131227ubuntu1) ... Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-2ubuntu1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython-dev:i386 (2.7.5-5ubuntu3) ... Setting up libpython-all-dev:i386 (2.7.5-5ubuntu3) ... Setting up libpython-stdlib:i386 (2.7.5-5ubuntu3) ... Setting up python2.7 (2.7.6-8) ... Setting up python-minimal (2.7.5-5ubuntu3) ... Setting up python (2.7.5-5ubuntu3) ... Setting up python-all (2.7.5-5ubuntu3) ... Setting up python2.7-dev (2.7.6-8) ... Setting up python-dev (2.7.5-5ubuntu3) ... Setting up python-all-dev (2.7.5-5ubuntu3) ... Setting up python-numpy (1:1.8.1-1ubuntu1) ... Setting up swig2.0 (2.0.11-1ubuntu3) ... Setting up swig (2.0.11-1ubuntu3) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-0ubuntu6 make_3.81-8.2ubuntu3 dpkg-dev_1.17.8ubuntu1 gcc-4.8_4.8.2-21ubuntu1 g++-4.8_4.8.2-21ubuntu1 binutils_2.24.51.20140425-0ubuntu2 libstdc++-4.8-dev_4.8.2-21ubuntu1 libstdc++6_4.9.0-1ubuntu3 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Mon Apr 28 22:07:18 2014 UTC using RSA key ID C020EED1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mgltools-geomutils_1.5.7~rc1+cvs.20140424-1.dsc dpkg-source: info: extracting mgltools-geomutils in mgltools-geomutils-1.5.7~rc1+cvs.20140424 dpkg-source: info: unpacking mgltools-geomutils_1.5.7~rc1+cvs.20140424.orig.tar.gz dpkg-source: info: unpacking mgltools-geomutils_1.5.7~rc1+cvs.20140424-1.debian.tar.xz dpkg-buildpackage: source package mgltools-geomutils dpkg-buildpackage: source version 1.5.7~rc1+cvs.20140424-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build mgltools-geomutils-1.5.7~rc1+cvs.20140424 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean --with python2 dh_testdir dh_auto_clean running clean 'build/lib.linux-i686-2.7' does not exist -- can't clean it 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424' dh_clean find . -name CVS -a -type d| xargs -r rm -r rm -rf build build-stamp make[1]: Leaving directory `/build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424' debian/rules build dh build --with python2 dh_testdir dh_auto_configure dh_auto_build running build running build_ext language: c building '_efitlib' extension swigging geomutils/efitlib.i to geomutils/efitlib_wrap.c command: ['swig', '-python', '-o', 'geomutils/efitlib_wrap.c', '-outdir', 'geomutils', 'geomutils/efitlib.i'] swig -python -o geomutils/efitlib_wrap.c -outdir geomutils geomutils/efitlib.i creating build creating build/temp.linux-i686-2.7 creating build/temp.linux-i686-2.7/src creating build/temp.linux-i686-2.7/src/efit creating build/temp.linux-i686-2.7/geomutils i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/efit -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/efit/efit.c -o build/temp.linux-i686-2.7/src/efit/efit.o In file included from src/efit/efit.h:54:0, from src/efit/efit.c:12: src/efit/efit_globals.h:16:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float gyration_of_ellipsoid(); ^ src/efit/efit.c: In function 'fitEllipse': src/efit/efit.c:27:3: warning: implicit declaration of function 'efit_init' [-Wimplicit-function-declaration] if(efit_init(eptr) != EFIT_OK) return EFIT_ERROR; ^ src/efit/efit.c:66:3: warning: implicit declaration of function 'fit_ellipsoid' [-Wimplicit-function-declaration] if(fit_ellipsoid(eptr->count, ellipsedata, ellipsoid, eptr) != EFIT_OK){ ^ src/efit/efit.c:69:3: warning: implicit declaration of function 'scale_ellipsoid' [-Wimplicit-function-declaration] scale_ellipsoid(ellipsoid,eptr->ell_scale); ^ src/efit/efit.c: At top level: src/efit/efit.c:75:1: warning: return type defaults to 'int' [-Wreturn-type] main(argc,argv) ^ src/efit/efit.c:75:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit.c: In function 'main': src/efit/efit.c:91:5: warning: implicit declaration of function 'efit_setflags' [-Wimplicit-function-declaration] argindex = efit_setflags(argc,argv,eptr); ^ src/efit/efit.c:93:5: warning: implicit declaration of function 'isatty' [-Wimplicit-function-declaration] if((argc == 1) && isatty(0)) efit_usage(); ^ src/efit/efit.c:93:5: warning: implicit declaration of function 'efit_usage' [-Wimplicit-function-declaration] src/efit/efit.c:102:9: warning: implicit declaration of function 'strcpy' [-Wimplicit-function-declaration] strcpy(ellipsoid.name,argv[argindex]); ^ src/efit/efit.c:102:9: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] src/efit/efit.c:121:5: warning: implicit declaration of function 'efit_read_points' [-Wimplicit-function-declaration] if(efit_read_points(eptr,ellipsedata,fp) != EFIT_OK) return(EFIT_ERROR); ^ src/efit/efit.c:128:5: warning: implicit declaration of function 'canonical_ellipsoid' [-Wimplicit-function-declaration] if(eptr->nosortflag)canonical_ellipsoid(eptr,&ellipsoid); ^ src/efit/efit.c:133:2: warning: implicit declaration of function 'print_ellipsoid' [-Wimplicit-function-declaration] if(debug) print_ellipsoid(stderr,ellipsoid,eptr); ^ src/efit/efit.c:136:9: warning: implicit declaration of function 'print_ellipsoid_matrix' [-Wimplicit-function-declaration] print_ellipsoid_matrix(stdout,ellipsoid,eptr); ^ src/efit/efit.c:138:9: warning: implicit declaration of function 'print_ellipsoid_tensor' [-Wimplicit-function-declaration] print_ellipsoid_tensor(stdout,ellipsoid,eptr); ^ src/efit/efit.c: At top level: src/efit/efit.c:152:1: warning: return type defaults to 'int' [-Wreturn-type] efit_setflags(argc,argv,eptr) ^ src/efit/efit.c:152:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit.c:222:1: warning: return type defaults to 'int' [-Wreturn-type] efit_usage() ^ src/efit/efit.c:222:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/efit -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/efit/efit_aux.c -o build/temp.linux-i686-2.7/src/efit/efit_aux.o In file included from src/efit/efit.h:54:0, from src/efit/efit_aux.c:7: src/efit/efit_globals.h:16:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float gyration_of_ellipsoid(); ^ src/efit/efit_aux.c:10:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] efit_read_points(eptr,points,fp) ^ src/efit/efit_aux.c:101:1: warning: return type defaults to 'int' [-Wreturn-type] efit_init(eptr) ^ src/efit/efit_aux.c:101:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c:110:1: warning: return type defaults to 'int' [-Wreturn-type] efit_centroid(count,points,centroid) ^ src/efit/efit_aux.c:110:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c:133:1: warning: return type defaults to 'int' [-Wreturn-type] efit_wcentroid(count,points,centroid) ^ src/efit/efit_aux.c:133:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c:166:1: warning: return type defaults to 'int' [-Wreturn-type] pair_comparefn(a,b) ^ src/efit/efit_aux.c:166:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c:174:1: warning: return type defaults to 'int' [-Wreturn-type] canonical_ellipsoid(eptr,ep) ^ src/efit/efit_aux.c:174:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c: In function 'canonical_ellipsoid': src/efit/efit_aux.c:189:5: warning: implicit declaration of function 'mat_copy' [-Wimplicit-function-declaration] mat_copy(ep->orientation,orientation); ^ src/efit/efit_aux.c:196:5: warning: implicit declaration of function 'qsort' [-Wimplicit-function-declaration] if(!eptr->nosortflag)qsort((void *)a,3,sizeof(struct pair),pair_comparefn); ^ src/efit/efit_aux.c:212:9: warning: implicit declaration of function 'efit_print_point' [-Wimplicit-function-declaration] efit_print_point("row 0",row[0]); ^ src/efit/efit_aux.c:217:5: warning: implicit declaration of function 'vec_cross' [-Wimplicit-function-declaration] vec_cross(row[1],row[2],tmppoint); /* y cross z */ ^ src/efit/efit_aux.c:220:5: warning: implicit declaration of function 'vec_dot' [-Wimplicit-function-declaration] if((dotvalue = vec_dot(row[0],tmppoint)) < 0.0){ ^ src/efit/efit_aux.c:230:5: warning: implicit declaration of function 'mat_transpose' [-Wimplicit-function-declaration] mat_transpose(ep->orientation,ep->inv_orientation); ^ src/efit/efit_aux.c: At top level: src/efit/efit_aux.c:234:1: warning: return type defaults to 'int' [-Wreturn-type] scale_ellipsoid(e,s) ^ src/efit/efit_aux.c:234:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c:252:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void inertia_tensor(npoints,points,centroid,tensor,eptr) ^ src/efit/efit_aux.c: In function 'inertia_tensor': src/efit/efit_aux.c:274:13: warning: implicit declaration of function 'vec_sub' [-Wimplicit-function-declaration] vec_sub(points[i].point,centroid,p); ^ src/efit/efit_aux.c: At top level: src/efit/efit_aux.c:307:1: warning: return type defaults to 'int' [-Wreturn-type] efit_covar_1(npoints,points,centroid,tensor,eptr) ^ src/efit/efit_aux.c:307:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c:357:1: warning: return type defaults to 'int' [-Wreturn-type] efit_covar(npoints,points,centroid,covmat,eptr) ^ src/efit/efit_aux.c:357:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c:428:1: warning: return type defaults to 'int' [-Wreturn-type] fit_ellipsoid(npoints,points, ellipsoid,eptr) ^ src/efit/efit_aux.c:428:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_aux.c: In function 'fit_ellipsoid': src/efit/efit_aux.c:465:5: warning: implicit declaration of function 'mat_jacobi' [-Wimplicit-function-declaration] (void)mat_jacobi(ellipsoid->tensor,eigenvalues,ellipsoid->inv_orientation); ^ src/efit/efit_aux.c: At top level: src/efit/efit_aux.c:499:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] gyration_of_ellipsoid(ellipsoid) ^ src/efit/efit_aux.c: In function 'efit_covar_1': src/efit/efit_aux.c:355:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/efit -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/efit/efit_io.c -o build/temp.linux-i686-2.7/src/efit/efit_io.o In file included from src/efit/efit.h:54:0, from src/efit/efit_io.c:6: src/efit/efit_globals.h:16:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float gyration_of_ellipsoid(); ^ src/efit/efit_io.c:8:1: warning: return type defaults to 'int' [-Wreturn-type] efit_print_point(s,p) ^ src/efit/efit_io.c:8:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_io.c:17:1: warning: return type defaults to 'int' [-Wreturn-type] print_ellipsoid_matrix(fp, ellipsoid,eptr) ^ src/efit/efit_io.c:17:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_io.c:50:1: warning: return type defaults to 'int' [-Wreturn-type] print_ellipsoid_tensor(fp, ellipsoid,eptr) ^ src/efit/efit_io.c:50:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_io.c:70:1: warning: return type defaults to 'int' [-Wreturn-type] print_ellipsoid_location(fp, ellipsoid,eptr) ^ src/efit/efit_io.c:70:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_io.c:90:1: warning: return type defaults to 'int' [-Wreturn-type] print_ellipsoid(fp, ellipsoid,eptr) ^ src/efit/efit_io.c:90:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/efit/efit_io.c: In function 'efit_print_point': src/efit/efit_io.c:13:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/efit/efit_io.c: In function 'print_ellipsoid_matrix': src/efit/efit_io.c:48:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/efit/efit_io.c: In function 'print_ellipsoid_tensor': src/efit/efit_io.c:68:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/efit/efit_io.c: In function 'print_ellipsoid_location': src/efit/efit_io.c:88:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/efit/efit_io.c: In function 'print_ellipsoid': src/efit/efit_io.c:113:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/efit -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/efit/vec.c -o build/temp.linux-i686-2.7/src/efit/vec.o src/efit/vec.c: In function 'mat_read': src/efit/vec.c:485:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf,sizeof(buf),fp); ^ src/efit/vec.c:488:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf,sizeof(buf),fp); ^ src/efit/vec.c:491:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf,sizeof(buf),fp); ^ i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/efit -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c geomutils/efitlib_wrap.c -o build/temp.linux-i686-2.7/geomutils/efitlib_wrap.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from geomutils/efitlib_wrap.c:2958: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from src/efit/efit.h:54:0, from geomutils/efitlib_wrap.c:3064: src/efit/efit_globals.h:16:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float gyration_of_ellipsoid(); ^ geomutils/efitlib_wrap.c: In function '_wrap_fitEllipse': geomutils/efitlib_wrap.c:4609:3: warning: implicit declaration of function 'fitEllipse' [-Wimplicit-function-declaration] result = (int)fitEllipse(arg1,arg2,arg3,arg4,arg5,arg6); ^ geomutils/efitlib_wrap.c: In function '_wrap_mat_jacobi': geomutils/efitlib_wrap.c:6121:3: warning: implicit declaration of function 'mat_jacobi' [-Wimplicit-function-declaration] result = (int)mat_jacobi((float (*)[3])arg1,arg2,(float (*)[3])arg3); ^ creating build/lib.linux-i686-2.7 creating build/lib.linux-i686-2.7/geomutils i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-i686-2.7/src/efit/efit.o build/temp.linux-i686-2.7/src/efit/efit_aux.o build/temp.linux-i686-2.7/src/efit/efit_io.o build/temp.linux-i686-2.7/src/efit/vec.o build/temp.linux-i686-2.7/geomutils/efitlib_wrap.o -lm -o build/lib.linux-i686-2.7/geomutils/_efitlib.so language: c++ building '_geomalgorithms' extension --swig-cpp is deprecated - use --swig-opts=-c++ swigging geomutils/geomalgorithms.i to geomutils/geomalgorithms_wrap.cpp command: ['swig', '-python', '-c++', '-o', 'geomutils/geomalgorithms_wrap.cpp', '-outdir', 'geomutils', 'geomutils/geomalgorithms.i'] swig -python -c++ -o geomutils/geomalgorithms_wrap.cpp -outdir geomutils geomutils/geomalgorithms.i creating build/temp.linux-i686-2.7/src/geomAlgorithms i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/geomAlgorithms -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/geomAlgorithms/point.cpp -o build/temp.linux-i686-2.7/src/geomAlgorithms/point.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] src/geomAlgorithms/point.cpp: In member function 'char* Point::errstr()': src/geomAlgorithms/point.cpp:364:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] return "no error"; ^ src/geomAlgorithms/point.cpp:366:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] return "error: invalid dimension for operation"; ^ src/geomAlgorithms/point.cpp:368:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] return "error: Point sum is not affine"; ^ src/geomAlgorithms/point.cpp:370:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] return "error: unknown err value"; ^ i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/geomAlgorithms -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/geomAlgorithms/Vector.cpp -o build/temp.linux-i686-2.7/src/geomAlgorithms/Vector.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/geomAlgorithms -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/geomAlgorithms/distance.cpp -o build/temp.linux-i686-2.7/src/geomAlgorithms/distance.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/geomAlgorithms -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/geomAlgorithms/intersections.cpp -o build/temp.linux-i686-2.7/src/geomAlgorithms/intersections.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/geomAlgorithms -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/geomAlgorithms/polygonArea.cpp -o build/temp.linux-i686-2.7/src/geomAlgorithms/polygonArea.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/geomAlgorithms -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/geomAlgorithms/boundingContainers.cpp -o build/temp.linux-i686-2.7/src/geomAlgorithms/boundingContainers.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/geomAlgorithms -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/geomAlgorithms/objfile.cpp -o build/temp.linux-i686-2.7/src/geomAlgorithms/objfile.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] src/geomAlgorithms/objfile.cpp: In function 'bool readObjFileGroup(const char*, const char*, char (*)[256], unsigned int*, float (*)[3], unsigned int*, int (*)[3], unsigned int*, float (*)[2], unsigned int*, int (*)[3], unsigned int*, int*, unsigned int*)': src/geomAlgorithms/objfile.cpp:195:16: warning: unused variable 'lNumOfTriangleMaterialIndices' [-Wunused-variable] unsigned int lNumOfTriangleMaterialIndices = 0 ; ^ i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc/geomAlgorithms -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c geomutils/geomalgorithms_wrap.cpp -o build/temp.linux-i686-2.7/geomutils/geomalgorithms_wrap.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from geomutils/geomalgorithms_wrap.cpp:3404: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ geomutils/geomalgorithms_wrap.cpp: In function 'int triangleNormalsPerVertex(double*, int*, float*, int*, int*)': geomutils/geomalgorithms_wrap.cpp:3148:12: warning: unused variable 'j' [-Wunused-variable] int i, j, k, *tric; ^ geomutils/geomalgorithms_wrap.cpp: In function 'int triangleNormalsBoth(double*, int*, float*, int*, int*, float*)': geomutils/geomalgorithms_wrap.cpp:3225:12: warning: unused variable 'j' [-Wunused-variable] int i, j, k, *tric; ^ geomutils/geomalgorithms_wrap.cpp: In function 'void removeDuplicatedVertices(float (*)[3], int*, int*, int*, DoubleArray*, IntArray*, float (*)[3], DoubleArray*)': geomutils/geomalgorithms_wrap.cpp:3326:69: warning: embedded '\0' in format [-Wformat-contains-nul] sprintf(st1, "%f%f%f\0", verts[i][0], verts[i][1], verts[i][2]); ^ geomutils/geomalgorithms_wrap.cpp: In function 'PyObject* _wrap_removeDuplicatedVertices(PyObject*, PyObject*, PyObject*)': geomutils/geomalgorithms_wrap.cpp:4272:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i=0; iob_refcnt != 0) \ ^ geomutils/sdf_wrap.c:3499:18: note: 'array2' was declared here PyArrayObject *array2 ; ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-i686-2.7/geomutils/sdf_wrap.o -o build/lib.linux-i686-2.7/geomutils/_sdflib.so running build_py copying geomutils/sdflib.py -> build/lib.linux-i686-2.7/geomutils copying geomutils/efitlib.py -> build/lib.linux-i686-2.7/geomutils copying geomutils/geomalgorithms.py -> build/lib.linux-i686-2.7/geomutils copying geomutils/__init__.py -> build/lib.linux-i686-2.7/geomutils copying geomutils/surface.py -> build/lib.linux-i686-2.7/geomutils creating build/lib.linux-i686-2.7/geomutils/Tests copying geomutils/Tests/test.py -> build/lib.linux-i686-2.7/geomutils/Tests copying geomutils/Tests/__init__.py -> build/lib.linux-i686-2.7/geomutils/Tests copying geomutils/Tests/test_dependencies.py -> build/lib.linux-i686-2.7/geomutils/Tests creating build/lib.linux-i686-2.7/geomutils/Tests/Data copying geomutils/Tests/Data/cv_coords.py -> build/lib.linux-i686-2.7/geomutils/Tests/Data copying geomutils/Tests/Data/crn_coords.py -> build/lib.linux-i686-2.7/geomutils/Tests/Data copying geomutils/Tests/Data/__init__.py -> build/lib.linux-i686-2.7/geomutils/Tests/Data dh_auto_test /usr/bin/fakeroot debian/rules binary dh binary --with python2 dh_testroot dh_prep dh_auto_install running install running build running build_ext language: c language: c++ language: None running build_py running install_lib creating /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr creating /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib creating /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7 creating /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages creating /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils copying build/lib.linux-i686-2.7/geomutils/_efitlib.so -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils copying build/lib.linux-i686-2.7/geomutils/_geomalgorithms.so -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils copying build/lib.linux-i686-2.7/geomutils/_sdflib.so -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils copying build/lib.linux-i686-2.7/geomutils/sdflib.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils copying build/lib.linux-i686-2.7/geomutils/efitlib.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils copying build/lib.linux-i686-2.7/geomutils/geomalgorithms.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils creating /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils/Tests creating /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils/Tests/Data copying build/lib.linux-i686-2.7/geomutils/Tests/Data/cv_coords.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils/Tests/Data copying build/lib.linux-i686-2.7/geomutils/Tests/Data/crn_coords.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils/Tests/Data copying build/lib.linux-i686-2.7/geomutils/Tests/Data/__init__.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils/Tests/Data copying build/lib.linux-i686-2.7/geomutils/Tests/test.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils/Tests copying build/lib.linux-i686-2.7/geomutils/Tests/__init__.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils/Tests copying build/lib.linux-i686-2.7/geomutils/Tests/test_dependencies.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils/Tests copying build/lib.linux-i686-2.7/geomutils/__init__.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils copying build/lib.linux-i686-2.7/geomutils/surface.py -> /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils running install_egg_info Writing /build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils/usr/lib/python2.7/dist-packages/geomutils-1.5.6.egg-info debian/rules override_dh_install make[1]: Entering directory `/build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424' dh_install dh_numpy make[1]: Leaving directory `/build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424' dh_installdocs dh_installchangelogs dh_python2 dh_perl dh_link dh_compress dh_fixperms dh_strip dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: mgltools-geomutils dh_strip debug symbol extraction: packages to act on: mgltools-geomutils dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package mgltools-geomutils: unused substitution variable ${python:Depends} /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: warning: '/build/buildd/mgltools-geomutils-1.5.7~rc1+cvs.20140424/debian/mgltools-geomutils-dbgsym/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `mgltools-geomutils-dbgsym' in `../mgltools-geomutils-dbgsym_1.5.7~rc1+cvs.20140424-1_i386.ddeb'. dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums dh_builddeb INFO: pkgstriptranslations version 121 pkgstriptranslations: processing mgltools-geomutils (in debian/mgltools-geomutils); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mgltools-geomutils/DEBIAN/control, package mgltools-geomutils, directory debian/mgltools-geomutils pkgstripfiles: Truncating usr/share/doc/mgltools-geomutils/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package mgltools-geomutils took 0 s dpkg-deb: warning: 'debian/mgltools-geomutils/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/mgltools-geomutils/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `mgltools-geomutils' in `../mgltools-geomutils_1.5.7~rc1+cvs.20140424-1_i386.deb'. dpkg-genchanges -b -mUbuntu/amd64 Build Daemon >../mgltools-geomutils_1.5.7~rc1+cvs.20140424-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mgltools-geomutils-1.5.7~rc1+cvs.20140424 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140429-1335 Publishing debug debs. chroot-autobuild/build/buildd/mgltools-geomutils_1.5.7~rc1+cvs.20140424-1_i386.deb: new debian package, version 2.0. size 78746 bytes: control archive= 1613 bytes. 925 bytes, 19 lines control 1709 bytes, 19 lines md5sums 168 bytes, 9 lines * postinst #!/bin/sh 273 bytes, 14 lines * prerm #!/bin/sh Package: mgltools-geomutils Version: 1.5.7~rc1+cvs.20140424-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 317 Depends: libc6 (>= 2.7), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.2.1), python-numpy (>= 1:1.8.0), python-numpy-abi9, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2) Enhances: autodocktools Section: non-free/science Priority: optional Homepage: http://mgltools.scripps.edu/ Description: Python library for geometric analyses This package is part of the mgltools set of Python libraries which provide an infrastructure for the analysis of protein structures and their docking of chemical compounds. . The library implements a series of functions for geometric analyses, e.g., for calculating distances or intersections. Python-Version: 2.7 chroot-autobuild/build/buildd/mgltools-geomutils_1.5.7~rc1+cvs.20140424-1_i386.deb: drwxr-xr-x root/root 0 2014-04-29 13:35 ./ drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/ drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/lib/ drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/geomutils/ -rw-r--r-- root/root 81644 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/geomutils/_efitlib.so -rw-r--r-- root/root 119128 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/geomutils/_geomalgorithms.so -rw-r--r-- root/root 26956 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/geomutils/_sdflib.so -rw-r--r-- root/root 2307 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/geomutils/sdflib.py -rw-r--r-- root/root 10076 2014-04-29 13:34 ./usr/lib/python2.7/dist-packages/geomutils/efitlib.py -rw-r--r-- root/root 7808 2014-04-29 13:34 ./usr/lib/python2.7/dist-packages/geomutils/geomalgorithms.py drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/geomutils/Tests/ drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/geomutils/Tests/Data/ -rw-r--r-- root/root 1606 2007-07-30 20:21 ./usr/lib/python2.7/dist-packages/geomutils/Tests/Data/cv_coords.py -rw-r--r-- root/root 8129 2007-07-30 20:21 ./usr/lib/python2.7/dist-packages/geomutils/Tests/Data/crn_coords.py -rw-r--r-- root/root 0 2004-06-30 19:00 ./usr/lib/python2.7/dist-packages/geomutils/Tests/Data/__init__.py -rw-r--r-- root/root 1861 2005-07-20 17:17 ./usr/lib/python2.7/dist-packages/geomutils/Tests/test.py -rw-r--r-- root/root 0 2004-03-04 23:21 ./usr/lib/python2.7/dist-packages/geomutils/Tests/__init__.py -rw-r--r-- root/root 850 2006-03-15 21:41 ./usr/lib/python2.7/dist-packages/geomutils/Tests/test_dependencies.py -rw-r--r-- root/root 112 2007-07-31 01:24 ./usr/lib/python2.7/dist-packages/geomutils/__init__.py -rw-r--r-- root/root 5415 2007-09-24 21:52 ./usr/lib/python2.7/dist-packages/geomutils/surface.py -rw-r--r-- root/root 339 2014-04-29 13:35 ./usr/lib/python2.7/dist-packages/geomutils-1.5.6.egg-info drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/share/ drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-04-29 13:35 ./usr/share/doc/mgltools-geomutils/ -rw-r--r-- root/root 913 2005-06-28 21:09 ./usr/share/doc/mgltools-geomutils/README -rw-r--r-- root/root 1417 2011-04-27 09:15 ./usr/share/doc/mgltools-geomutils/README.Debian -rw-r--r-- root/root 5058 2013-05-31 17:09 ./usr/share/doc/mgltools-geomutils/copyright -rw-r--r-- root/root 754 2014-04-29 13:35 ./usr/share/doc/mgltools-geomutils/changelog.Debian.gz mgltools-geomutils_1.5.7~rc1+cvs.20140424-1_i386.changes: Format: 1.8 Date: Thu, 24 Apr 2014 17:40:45 +0200 Source: mgltools-geomutils Binary: mgltools-geomutils Architecture: i386 Version: 1.5.7~rc1+cvs.20140424-1 Distribution: utopic-proposed Urgency: medium Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Steffen Moeller Description: mgltools-geomutils - Python library for geometric analyses Changes: mgltools-geomutils (1.5.7~rc1+cvs.20140424-1) unstable; urgency=medium . * New upstream version. Checksums-Sha1: dd2640c285e6d2259e3715e11ea1a33c4f1835b1 78746 mgltools-geomutils_1.5.7~rc1+cvs.20140424-1_i386.deb Checksums-Sha256: eeddbea4332d6a5924194f67002aec1e1bfd853970b2aae7c2a84bd3479331cc 78746 mgltools-geomutils_1.5.7~rc1+cvs.20140424-1_i386.deb Files: 8f4ff47e45c5adf12b1142ee09bc630f 78746 non-free/science optional mgltools-geomutils_1.5.7~rc1+cvs.20140424-1_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140429-1335 Build needed 00:00:17, 3808k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5959360'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5959360/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5959360'] Unmounting chroot for build PACKAGEBUILD-5959360... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5959360'] Removing build PACKAGEBUILD-5959360