RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.31-611-imx51 #29-Ubuntu Thu Oct 13 19:22:29 UTC 2011 armv7l Buildd toolchain package versions: launchpad-buildd_110~0.IS.08.04 python-lpbuildd_110~0.IS.08.04 bzr_2.4.0-0ubuntu2~9.IS.10.04.3. Syncing the system clock with the buildd NTP service... 29 Dec 10:36:43 ntpdate[29413]: adjust time server 10.211.37.1 offset 0.000032 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9', '/home/buildd/filecache-default/f998171f34ac6b7faf204cb26fea84903da07d61'] Unpacking chroot for build 3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9'] Mounting chroot for build 3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9', 'armel'] Updating debian chroot for build 3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9 Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main armel Packages [1259 kB] Get:4 http://ftpmaster.internal precise/universe armel Packages [4584 kB] Get:5 http://ftpmaster.internal precise/main TranslationIndex [3502 B] Get:6 http://ftpmaster.internal precise/universe TranslationIndex [2712 B] Get:7 http://ftpmaster.internal precise/main Translation-en [718 kB] Get:8 http://ftpmaster.internal precise/universe Translation-en [3314 kB] Fetched 9930 kB in 59s (168 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bsdutils busybox-initramfs cpp-4.6 dpkg dpkg-dev g++-4.6 gcc-4.6 gcc-4.6-base grep ifupdown libacl1 libattr1 libblkid1 libdpkg-perl libgcc1 libgomp1 libgssapi-krb5-2 libidn11 libk5crypto3 libkrb5-3 libkrb5support0 libmount1 libpciaccess0 libstdc++6 libstdc++6-4.6-dev libudev0 libuuid1 linux-libc-dev mount perl perl-base perl-modules python-minimal python2.7-minimal udev util-linux 36 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 31.0 MB of archives. After this operation, 560 kB disk space will be freed. WARNING: The following packages cannot be authenticated! dpkg grep libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 libuuid1 libblkid1 libmount1 mount perl perl-base perl-modules util-linux bsdutils python2.7-minimal python-minimal libattr1 libacl1 libpciaccess0 libudev0 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libidn11 busybox-initramfs ifupdown udev dpkg-dev libdpkg-perl linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main dpkg armel 1.16.1.2ubuntu5 [1752 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main grep armel 2.10-1 [227 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 armel 4.6.2-9ubuntu1 [23.6 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base armel 4.6.2-9ubuntu1 [16.1 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 armel 1:4.6.2-9ubuntu1 [22.0 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 armel 4.6.2-9ubuntu1 [4099 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev armel 4.6.2-9ubuntu1 [1691 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 armel 4.6.2-9ubuntu1 [4975 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 armel 4.6.2-9ubuntu1 [4532 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 armel 4.6.2-9ubuntu1 [269 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libuuid1 armel 2.20.1-1ubuntu1 [13.4 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libblkid1 armel 2.20.1-1ubuntu1 [64.4 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libmount1 armel 2.20.1-1ubuntu1 [60.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main mount armel 2.20.1-1ubuntu1 [155 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main perl armel 5.14.2-6ubuntu1 [3619 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main perl-base armel 5.14.2-6ubuntu1 [1348 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main perl-modules all 5.14.2-6ubuntu1 [3369 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main util-linux armel 2.20.1-1ubuntu1 [572 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main bsdutils armel 1:2.20.1-1ubuntu1 [39.7 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main python2.7-minimal armel 2.7.2-9 [1488 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main python-minimal all 2.7.2-9ubuntu2 [29.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libattr1 armel 1:2.4.46-5ubuntu1 [9142 B] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libacl1 armel 2.2.51-5ubuntu1 [14.3 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libpciaccess0 armel 0.12.902-1 [17.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libudev0 armel 175-0ubuntu3 [26.4 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libgssapi-krb5-2 armel 1.10+dfsg~alpha1-6ubuntu1 [93.5 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libk5crypto3 armel 1.10+dfsg~alpha1-6ubuntu1 [79.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-3 armel 1.10+dfsg~alpha1-6ubuntu1 [290 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libkrb5support0 armel 1.10+dfsg~alpha1-6ubuntu1 [20.1 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libidn11 armel 1.23-2 [107 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main busybox-initramfs armel 1:1.18.5-1ubuntu2 [156 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main ifupdown armel 0.7~alpha5.1ubuntu6 [43.4 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main udev armel 175-0ubuntu3 [293 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main dpkg-dev armel 1.16.1.2ubuntu5 [468 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libdpkg-perl armel 1.16.1.2ubuntu5 [181 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev armel 3.2.0-7.13 [818 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.0 MB in 20s (1535 kB/s) (Reading database ... 14124 files and directories currently installed.) Preparing to replace dpkg 1.16.1.2ubuntu4 (using .../dpkg_1.16.1.2ubuntu5_armel.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.1.2ubuntu5) ... (Reading database ... 14124 files and directories currently installed.) Preparing to replace grep 2.9-2 (using .../archives/grep_2.10-1_armel.deb) ... Unpacking replacement grep ... Setting up grep (2.10-1) ... (Reading database ... 14124 files and directories currently installed.) Preparing to replace libgomp1 4.6.2-7ubuntu1 (using .../libgomp1_4.6.2-9ubuntu1_armel.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.2-7ubuntu1 (using .../gcc-4.6-base_4.6.2-9ubuntu1_armel.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.2-9ubuntu1) ... (Reading database ... 14124 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.2-7ubuntu1 (using .../libgcc1_1%3a4.6.2-9ubuntu1_armel.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.2-9ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14124 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.2-7ubuntu1 (using .../cpp-4.6_4.6.2-9ubuntu1_armel.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libstdc++6-4.6-dev 4.6.2-7ubuntu1 (using .../libstdc++6-4.6-dev_4.6.2-9ubuntu1_armel.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.2-7ubuntu1 (using .../g++-4.6_4.6.2-9ubuntu1_armel.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.2-7ubuntu1 (using .../gcc-4.6_4.6.2-9ubuntu1_armel.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.2-7ubuntu1 (using .../libstdc++6_4.6.2-9ubuntu1_armel.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.2-9ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14124 files and directories currently installed.) Preparing to replace libuuid1 2.19.1-2ubuntu3 (using .../libuuid1_2.20.1-1ubuntu1_armel.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (2.20.1-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14124 files and directories currently installed.) Preparing to replace libblkid1 2.19.1-2ubuntu3 (using .../libblkid1_2.20.1-1ubuntu1_armel.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.20.1-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14124 files and directories currently installed.) Preparing to replace libmount1 2.19.1-2ubuntu3 (using .../libmount1_2.20.1-1ubuntu1_armel.deb) ... Unpacking replacement libmount1 ... Setting up libmount1 (2.20.1-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14124 files and directories currently installed.) Preparing to replace mount 2.19.1-2ubuntu3 (using .../mount_2.20.1-1ubuntu1_armel.deb) ... Unpacking replacement mount ... Setting up mount (2.20.1-1ubuntu1) ... (Reading database ... 14124 files and directories currently installed.) Preparing to replace perl 5.14.2-6 (using .../perl_5.14.2-6ubuntu1_armel.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6 (using .../perl-base_5.14.2-6ubuntu1_armel.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu1) ... (Reading database ... 14124 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6 (using .../perl-modules_5.14.2-6ubuntu1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace util-linux 2.19.1-2ubuntu3 (using .../util-linux_2.20.1-1ubuntu1_armel.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.20.1-1ubuntu1) ... (Reading database ... 14117 files and directories currently installed.) Preparing to replace bsdutils 1:2.19.1-2ubuntu3 (using .../bsdutils_1%3a2.20.1-1ubuntu1_armel.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.20.1-1ubuntu1) ... (Reading database ... 14117 files and directories currently installed.) Preparing to replace python2.7-minimal 2.7.2-8build1 (using .../python2.7-minimal_2.7.2-9_armel.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.2-9) ... (Reading database ... 14117 files and directories currently installed.) Preparing to replace python-minimal 2.7.2-9ubuntu1 (using .../python-minimal_2.7.2-9ubuntu2_all.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.7.2-9ubuntu2) ... (Reading database ... 14117 files and directories currently installed.) Preparing to replace libattr1 1:2.4.46-3ubuntu1 (using .../libattr1_1%3a2.4.46-5ubuntu1_armel.deb) ... Unpacking replacement libattr1 ... Setting up libattr1 (1:2.4.46-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14117 files and directories currently installed.) Preparing to replace libacl1 2.2.51-4ubuntu1 (using .../libacl1_2.2.51-5ubuntu1_armel.deb) ... Unpacking replacement libacl1 ... Setting up libacl1 (2.2.51-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14117 files and directories currently installed.) Preparing to replace libpciaccess0 0.12.1-2 (using .../libpciaccess0_0.12.902-1_armel.deb) ... Unpacking replacement libpciaccess0 ... Preparing to replace libudev0 175-0ubuntu2 (using .../libudev0_175-0ubuntu3_armel.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgssapi-krb5-2 1.9.1+dfsg-3ubuntu1 (using .../libgssapi-krb5-2_1.10+dfsg~alpha1-6ubuntu1_armel.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libk5crypto3 1.9.1+dfsg-3ubuntu1 (using .../libk5crypto3_1.10+dfsg~alpha1-6ubuntu1_armel.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libkrb5-3 1.9.1+dfsg-3ubuntu1 (using .../libkrb5-3_1.10+dfsg~alpha1-6ubuntu1_armel.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.9.1+dfsg-3ubuntu1 (using .../libkrb5support0_1.10+dfsg~alpha1-6ubuntu1_armel.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libidn11 1.23-1 (using .../libidn11_1.23-2_armel.deb) ... Unpacking replacement libidn11 ... Preparing to replace busybox-initramfs 1:1.18.5-1ubuntu1 (using .../busybox-initramfs_1%3a1.18.5-1ubuntu2_armel.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace ifupdown 0.7~alpha5.1ubuntu5 (using .../ifupdown_0.7~alpha5.1ubuntu6_armel.deb) ... Unpacking replacement ifupdown ... Preparing to replace udev 175-0ubuntu2 (using .../udev_175-0ubuntu3_armel.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace dpkg-dev 1.16.1.2ubuntu4 (using .../dpkg-dev_1.16.1.2ubuntu5_armel.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.16.1.2ubuntu4 (using .../libdpkg-perl_1.16.1.2ubuntu5_armel.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace linux-libc-dev 3.2.0-4.10 (using .../linux-libc-dev_3.2.0-7.13_armel.deb) ... Unpacking replacement linux-libc-dev ... Setting up libgomp1 (4.6.2-9ubuntu1) ... Setting up cpp-4.6 (4.6.2-9ubuntu1) ... Setting up gcc-4.6 (4.6.2-9ubuntu1) ... Setting up libpciaccess0 (0.12.902-1) ... Setting up libudev0 (175-0ubuntu3) ... Setting up libkrb5support0 (1.10+dfsg~alpha1-6ubuntu1) ... Setting up libk5crypto3 (1.10+dfsg~alpha1-6ubuntu1) ... Setting up libkrb5-3 (1.10+dfsg~alpha1-6ubuntu1) ... Setting up libgssapi-krb5-2 (1.10+dfsg~alpha1-6ubuntu1) ... Setting up libidn11 (1.23-2) ... Setting up busybox-initramfs (1:1.18.5-1ubuntu2) ... Setting up ifupdown (0.7~alpha5.1ubuntu6) ... Setting up udev (175-0ubuntu3) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up linux-libc-dev (3.2.0-7.13) ... Setting up perl-modules (5.14.2-6ubuntu1) ... Setting up perl (5.14.2-6ubuntu1) ... Setting up libdpkg-perl (1.16.1.2ubuntu5) ... Setting up dpkg-dev (1.16.1.2ubuntu5) ... Setting up g++-4.6 (4.6.2-9ubuntu1) ... Setting up libstdc++6-4.6-dev (4.6.2-9ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9', 'armel', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=armel', '--comp=universe', 'minc_2.1.00-2.dsc'] Initiating build 3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9 with 0 processor cores. Automatic build of minc_2.1.00-2 on cushaw by sbuild/armel 1.170.5 Build started at 20111229-1041 ****************************************************************************** minc_2.1.00-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 5), csh, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-mpi-dev Checking for already installed source dependencies... cdbs: missing debhelper: missing csh: missing libnetcdf-dev: missing zlib1g-dev: missing texlive-latex-base: missing libhdf5-mpi-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper csh libnetcdf-dev zlib1g-dev texlive-latex-base libhdf5-mpi-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils dh-translations ed file fontconfig-config gettext gettext-base groff-base html2text intltool intltool-debian libbsd0 libcroco3 libdb4.8 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libibverbs-dev libibverbs1 libice6 libio-socket-ssl-perl libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libkpathsea5 liblcms1 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libnetcdf6 libopenmpi-dev libopenmpi1.3 libpaper-utils libpaper1 libpipeline1 libpoppler19 libsm6 libtorque2 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxml-parser-perl libxml2 libxmu6 libxpm4 libxt6 luatex m4 man-db mime-support mpi-default-dev openmpi-common po-debconf python python-scour python2.7 tex-common texlive-base texlive-binaries texlive-common texlive-doc-base ttf-dejavu-core ucf x11-common Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libhdf5-doc libdata-dump-perl liblcms-utils libcrypt-ssleay-perl netcdf-bin netcdf-doc poppler-data libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc perl-tk ghostscript xpdf-reader pdf-viewer gv postscript-viewer Recommended packages: curl wget lynx-cur libio-socket-inet6-perl pkg-config libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl xml-core texlive-luatex libmail-sendmail-perl lmodern texlive-latex-base-doc The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs csh debhelper dh-translations ed file fontconfig-config gettext gettext-base groff-base html2text intltool intltool-debian libbsd0 libcroco3 libdb4.8 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgettextpo0 libgfortran3 libhdf5-mpi-dev libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libibverbs-dev libibverbs1 libice6 libio-socket-ssl-perl libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libkpathsea5 liblcms1 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libnetcdf-dev libnetcdf6 libopenmpi-dev libopenmpi1.3 libpaper-utils libpaper1 libpipeline1 libpoppler19 libsm6 libtorque2 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxml-parser-perl libxml2 libxmu6 libxpm4 libxt6 luatex m4 man-db mime-support mpi-default-dev openmpi-common po-debconf python python-scour python2.7 tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-latex-base ttf-dejavu-core ucf x11-common zlib1g-dev 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 52.6 MB of archives. After this operation, 140 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libdb4.8 libexpat1 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libcroco3 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libunistring0 libgettextpo0 libgfortran3 x11-common libice6 libjpeg-turbo8 liblcms1 libsm6 libxt6 libxmu6 libxpm4 libxaw7 libmagic1 file mime-support python2.7 python bsdmainutils ed gettext-base groff-base libbsd0 man-db m4 autoconf autotools-dev automake html2text gettext intltool-debian po-debconf debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-http-perl libnet-ssleay-perl libio-socket-ssl-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations python-scour cdbs csh libjpeg-turbo8-dev libjpeg8 libkpathsea5 libibverbs1 libtorque2 libopenmpi1.3 libhdf5-openmpi-1.8.4 libnetcdf6 libnetcdf-dev libpaper1 libpaper-utils libpoppler19 luatex openmpi-common tex-common texlive-common texlive-doc-base texlive-binaries texlive-base texlive-latex-base zlib1g-dev libibverbs-dev libopenmpi-dev libhdf5-openmpi-dev mpi-default-dev libhdf5-mpi-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libdb4.8 armel 4.8.30-11 [570 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 armel 2.0.1-7.2 [102 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 armel 1.2.0-5 [20.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libxau6 armel 1:1.0.6-4 [7142 B] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 armel 1:1.1.0-4 [11.0 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 armel 1.7-4 [33.2 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libx11-data armel 2:1.4.4-4 [172 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 armel 2:1.4.4-4 [682 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxext6 armel 2:1.3.0-3 [27.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libxml2 armel 2.7.8.dfsg-5ubuntu1 [551 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 armel 0.6.2-2 [81.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 armel 2.4.8-1 [270 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core armel 2.33-2 [1550 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config armel 2.8.0-3ubuntu2 [44.5 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 armel 2.8.0-3ubuntu2 [106 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 armel 0.9.3-5 [394 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 armel 0.18.1.1-5ubuntu3 [99.4 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libgfortran3 armel 4.6.2-9ubuntu1 [221 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main x11-common armel 1:7.6+7ubuntu7 [56.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libice6 armel 2:1.0.7-2 [37.9 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-turbo8 armel 1.1.90+svn733-0ubuntu3 [83.1 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main liblcms1 armel 1.19.dfsg-1ubuntu3 [88.4 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libsm6 armel 2:1.2.0-2 [15.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libxt6 armel 1:1.1.1-2 [146 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libxmu6 armel 2:1.1.0-3 [42.8 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libxpm4 armel 1:3.5.9-4 [31.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libxaw7 armel 2:1.0.9-3 [156 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 armel 5.09-2 [213 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main file armel 5.09-2 [18.9 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main python2.7 armel 2.7.2-9 [2510 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main python all 2.7.2-9ubuntu2 [168 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils armel 8.2.3 [194 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main ed armel 1.5-3 [52.1 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main gettext-base armel 0.18.1.1-5ubuntu3 [54.7 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main groff-base armel 1.21-6 [934 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libbsd0 armel 0.3.0-1 [28.5 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main man-db armel 2.6.0.2-3 [671 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main m4 armel 1.4.16-2ubuntu1 [182 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main autoconf armel 2.68-1ubuntu2 [560 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20110511.1 [44.7 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main automake armel 1:1.11.1-1ubuntu2 [544 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main html2text armel 1.3.2a-15 [94.3 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main gettext armel 0.18.1.1-5ubuntu3 [1050 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main po-debconf armel 1.0.16+nmu1ubuntu1 [211 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main debhelper armel 8.9.9ubuntu1 [477 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main liburi-perl all 1.59-1 [90.3 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libencode-locale-perl all 1.02-2 [12.0 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libhttp-date-perl all 6.00-1 [10.1 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libfile-listing-perl all 6.03-1 [9690 B] Get:53 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main libhtml-parser-perl armel 3.69-1build1 [95.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tree-perl all 4.2-1 [205 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main liblwp-mediatypes-perl all 6.01-1 [17.5 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main libhttp-message-perl all 6.01-1 [77.6 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libnet-http-perl all 6.02-1 [23.5 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main libnet-ssleay-perl armel 1.42-1build1 [175 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main libio-socket-ssl-perl all 1.53-1 [47.5 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main liblwp-protocol-https-perl all 6.02-1 [6746 B] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main libwww-perl all 6.03-1 [156 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main libxml-parser-perl armel 2.41-1build1 [304 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main intltool all 0.50.0-0ubuntu2 [101 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main dh-translations all 110 [21.1 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main python-scour all 0.26-2 [46.3 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/main cdbs all 0.4.100ubuntu1 [47.7 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/universe csh armel 20110502-2ubuntu1 [230 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-turbo8-dev armel 1.1.90+svn733-0ubuntu3 [311 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 armel 8c-2ubuntu6 [1954 B] Get:74 http://ftpmaster.internal/ubuntu/ precise/main libkpathsea5 armel 2009-11ubuntu2 [49.9 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main libibverbs1 armel 1.1.5-1ubuntu1 [22.2 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/universe libtorque2 armel 2.4.16+dfsg-1build1 [74.1 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/universe libopenmpi1.3 armel 1.4.3-2.1ubuntu2 [1123 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/universe libhdf5-openmpi-1.8.4 armel 1.8.4-patch1-3ubuntu2 [1221 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/universe libnetcdf6 armel 1:4.1.1-6 [404 kB] Get:80 http://ftpmaster.internal/ubuntu/ precise/universe libnetcdf-dev armel 1:4.1.1-6 [552 kB] Get:81 http://ftpmaster.internal/ubuntu/ precise/main libpaper1 armel 1.1.24+nmu1 [13.0 kB] Get:82 http://ftpmaster.internal/ubuntu/ precise/main libpaper-utils armel 1.1.24+nmu1 [8626 B] Get:83 http://ftpmaster.internal/ubuntu/ precise/main libpoppler19 armel 0.18.2-0ubuntu2 [639 kB] Get:84 http://ftpmaster.internal/ubuntu/ precise/main luatex armel 0.70.1-1ubuntu1 [2193 kB] Get:85 http://ftpmaster.internal/ubuntu/ precise/universe openmpi-common all 1.4.3-2.1ubuntu2 [84.4 kB] Get:86 http://ftpmaster.internal/ubuntu/ precise/main tex-common all 2.10 [709 kB] Get:87 http://ftpmaster.internal/ubuntu/ precise/main texlive-common all 2009-15 [94.4 kB] Get:88 http://ftpmaster.internal/ubuntu/ precise/main texlive-doc-base all 2009-2 [1339 kB] Get:89 http://ftpmaster.internal/ubuntu/ precise/main texlive-binaries armel 2009-11ubuntu2 [7317 kB] Get:90 http://ftpmaster.internal/ubuntu/ precise/main texlive-base all 2009-15 [14.7 MB] Get:91 http://ftpmaster.internal/ubuntu/ precise/main texlive-latex-base all 2009-15 [1406 kB] Get:92 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev armel 1:1.2.3.4.dfsg-3ubuntu4 [159 kB] Get:93 http://ftpmaster.internal/ubuntu/ precise/main libibverbs-dev armel 1.1.5-1ubuntu1 [71.3 kB] Get:94 http://ftpmaster.internal/ubuntu/ precise/universe libopenmpi-dev armel 1.4.3-2.1ubuntu2 [2314 kB] Get:95 http://ftpmaster.internal/ubuntu/ precise/universe libhdf5-openmpi-dev armel 1.8.4-patch1-3ubuntu2 [2323 kB] Get:96 http://ftpmaster.internal/ubuntu/ precise/universe mpi-default-dev armel 0.6ubuntu2 [3376 B] Get:97 http://ftpmaster.internal/ubuntu/ precise/universe libhdf5-mpi-dev armel 1.8.4-patch1-3ubuntu2 [3072 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.6 MB in 35s (1472 kB/s) Selecting previously unselected package libdb4.8. (Reading database ... 14115 files and directories currently installed.) Unpacking libdb4.8 (from .../libdb4.8_4.8.30-11_armel.deb) ... Selecting previously unselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_armel.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_armel.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_armel.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_armel.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.7-4_armel.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_armel.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_armel.deb) ... Selecting previously unselected package libxext6. 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Selecting previously unselected package libhdf5-openmpi-1.8.4. Unpacking libhdf5-openmpi-1.8.4 (from .../libhdf5-openmpi-1.8.4_1.8.4-patch1-3ubuntu2_armel.deb) ... Selecting previously unselected package libnetcdf6. Unpacking libnetcdf6 (from .../libnetcdf6_1%3a4.1.1-6_armel.deb) ... Selecting previously unselected package libnetcdf-dev. Unpacking libnetcdf-dev (from .../libnetcdf-dev_1%3a4.1.1-6_armel.deb) ... Selecting previously unselected package libpaper1. Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_armel.deb) ... Selecting previously unselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_armel.deb) ... Selecting previously unselected package libpoppler19. Unpacking libpoppler19 (from .../libpoppler19_0.18.2-0ubuntu2_armel.deb) ... Selecting previously unselected package luatex. Unpacking luatex (from .../luatex_0.70.1-1ubuntu1_armel.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.3-2.1ubuntu2_all.deb) ... Selecting previously unselected package tex-common. Unpacking tex-common (from .../tex-common_2.10_all.deb) ... Selecting previously unselected package texlive-common. Unpacking texlive-common (from .../texlive-common_2009-15_all.deb) ... Selecting previously unselected package texlive-doc-base. Unpacking texlive-doc-base (from .../texlive-doc-base_2009-2_all.deb) ... Selecting previously unselected package texlive-binaries. Unpacking texlive-binaries (from .../texlive-binaries_2009-11ubuntu2_armel.deb) ... Selecting previously unselected package texlive-base. Unpacking texlive-base (from .../texlive-base_2009-15_all.deb) ... Selecting previously unselected package texlive-latex-base. Unpacking texlive-latex-base (from .../texlive-latex-base_2009-15_all.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_armel.deb) ... Selecting previously unselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.5-1ubuntu1_armel.deb) ... Selecting previously unselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.3-2.1ubuntu2_armel.deb) ... Selecting previously unselected package libhdf5-openmpi-dev. Unpacking libhdf5-openmpi-dev (from .../libhdf5-openmpi-dev_1.8.4-patch1-3ubuntu2_armel.deb) ... Selecting previously unselected package mpi-default-dev. Unpacking mpi-default-dev (from .../mpi-default-dev_0.6ubuntu2_armel.deb) ... Selecting previously unselected package libhdf5-mpi-dev. Unpacking libhdf5-mpi-dev (from .../libhdf5-mpi-dev_1.8.4-patch1-3ubuntu2_armel.deb) ... Setting up libdb4.8 (4.8.30-11) ... Setting up libexpat1 (2.0.1-7.2) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxau6 (1:1.0.6-4) ... Setting up libxdmcp6 (1:1.1.0-4) ... Setting up libxcb1 (1.7-4) ... Setting up libx11-data (2:1.4.4-4) ... Setting up libx11-6 (2:1.4.4-4) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxml2 (2.7.8.dfsg-5ubuntu1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libfreetype6 (2.4.8-1) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3ubuntu2) ... Setting up libfontconfig1 (2.8.0-3ubuntu2) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libgfortran3 (4.6.2-9ubuntu1) ... Setting up x11-common (1:7.6+7ubuntu7) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6 (2:1.0.7-2) ... Setting up libjpeg-turbo8 (1.1.90+svn733-0ubuntu3) ... Setting up liblcms1 (1.19.dfsg-1ubuntu3) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libxmu6 (2:1.1.0-3) ... Setting up libxpm4 (1:3.5.9-4) ... Setting up libxaw7 (2:1.0.9-3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7 (2.7.2-9) ... Setting up python (2.7.2-9ubuntu2) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up ed (1.5-3) ... Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-6) ... Setting up libbsd0 (0.3.0-1) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up m4 (1.4.16-2ubuntu1) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20110511.1) ... Setting up automake (1:1.11.1-1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1ubuntu1) ... Setting up debhelper (8.9.9ubuntu1) ... Setting up liburi-perl (1.59-1) ... Setting up libencode-locale-perl (1.02-2) ... Setting up libhttp-date-perl (6.00-1) ... Setting up libfile-listing-perl (6.03-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-1build1) ... Setting up libhtml-tree-perl (4.2-1) ... Setting up liblwp-mediatypes-perl (6.01-1) ... Setting up libhttp-message-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-http-perl (6.02-1) ... Setting up libnet-ssleay-perl (1.42-1build1) ... Setting up libio-socket-ssl-perl (1.53-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-2) ... Setting up csh (20110502-2ubuntu1) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode. Setting up libjpeg-turbo8-dev (1.1.90+svn733-0ubuntu3) ... Setting up libjpeg8 (8c-2ubuntu6) ... Setting up libkpathsea5 (2009-11ubuntu2) ... Setting up libibverbs1 (1.1.5-1ubuntu1) ... Setting up libtorque2 (2.4.16+dfsg-1build1) ... Setting up libopenmpi1.3 (1.4.3-2.1ubuntu2) ... Setting up libhdf5-openmpi-1.8.4 (1.8.4-patch1-3ubuntu2) ... Setting up libnetcdf6 (1:4.1.1-6) ... Setting up libnetcdf-dev (1:4.1.1-6) ... Setting up libpaper1 (1.1.24+nmu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu1) ... Setting up libpoppler19 (0.18.2-0ubuntu2) ... Setting up luatex (0.70.1-1ubuntu1) ... texlive-base is not ready, cannot create formats Setting up openmpi-common (1.4.3-2.1ubuntu2) ... Setting up tex-common (2.10) ... Creating config file /etc/texmf/texmf.d/05TeXMF.cnf with new version Creating config file /etc/texmf/texmf.d/15Plain.cnf with new version Creating config file /etc/texmf/texmf.d/45TeXinputs.cnf with new version Creating config file /etc/texmf/texmf.d/55Fonts.cnf with new version Creating config file /etc/texmf/texmf.d/65BibTeX.cnf with new version Creating config file /etc/texmf/texmf.d/75DviPS.cnf with new version Creating config file /etc/texmf/texmf.d/80DVIPDFMx.cnf with new version Creating config file /etc/texmf/texmf.d/85Misc.cnf with new version Creating config file /etc/texmf/texmf.d/90TeXDoc.cnf with new version Creating config file /etc/texmf/texmf.d/95NonPath.cnf with new version Creating config file /etc/texmf/updmap.d/00updmap.cfg with new version Creating config file /etc/texmf/texmf.cnf with new version Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-common (2009-15) ... Setting up texlive-doc-base (2009-2) ... Setting up texlive-binaries (2009-11ubuntu2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. Building format(s) --refresh. This may take some time... done. Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libibverbs-dev (1.1.5-1ubuntu1) ... Setting up libopenmpi-dev (1.4.3-2.1ubuntu2) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up libhdf5-openmpi-dev (1.8.4-patch1-3ubuntu2) ... Setting up mpi-default-dev (0.6ubuntu2) ... Setting up libhdf5-mpi-dev (1.8.4-patch1-3ubuntu2) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2009-15) ... Creating config file /etc/texmf/dvips/config/config.ps with new version Creating config file /etc/texmf/tex/generic/config/pdftexconfig.tex with new version Creating config file /etc/texmf/dvipdfmx/dvipdfmx.cfg with new version Creating config file /etc/texmf/xdvi/XDvi with new version Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building e-tex based formats --byhyphen /var/lib/texmf/tex/generic/config/language.def. This may take some time... done. Setting up texlive-latex-base (2009-15) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up libwww-perl (6.03-1) ... Setting up liblwp-protocol-https-perl (6.02-1) ... Setting up libxml-parser-perl (2.41-1build1) ... Setting up intltool (0.50.0-0ubuntu2) ... Setting up dh-translations (110) ... Setting up cdbs (0.4.100ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-23ubuntu1 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu5 gcc-4.6_4.6.2-9ubuntu1 g++-4.6_4.6.2-9ubuntu1 binutils_2.22-2ubuntu1 libstdc++6-4.6-dev_4.6.2-9ubuntu1 libstdc++6_4.6.2-9ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Mon Dec 19 02:56:29 2011 UTC using DSA key ID 21DB31C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./minc_2.1.00-2.dsc dpkg-source: info: extracting minc in minc-2.1.00 dpkg-source: info: unpacking minc_2.1.00.orig.tar.gz dpkg-source: info: applying minc_2.1.00-2.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package minc dpkg-buildpackage: source version 2.1.00-2 dpkg-source --before-build minc-2.1.00 dpkg-buildpackage: host architecture armel /usr/bin/fakeroot debian/rules clean /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/minc-2.1.00' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/minc-2.1.00' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-autotools rmdir --ignore-fail-on-non-empty . rmdir: failed to remove `.': Invalid argument make: [makefile-clean] Error 1 (ignored) /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/minc-2.1.00' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead for i in ./ac_config_aux/config.guess ./ac_config_aux/config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/buildd/minc-2.1.00' if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: debian/patches/01_mincedit-sensible-viewer.diff debian/patches/03_mincview.diff debian/patches/decompress-whole-file.diff Patch debian/patches/decompress-whole-file.diff is not applied. Patch debian/patches/03_mincview.diff is not applied. Patch debian/patches/01_mincedit-sensible-viewer.diff is not applied. if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "reverse-patches" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi for dir in debian/patches ; do \ rm -f $dir/*.log ; \ done for i in ./ac_config_aux/config.guess ./ac_config_aux/config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean rm -f debian/stamp-autotools-files debian/rules build /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/minc-2.1.00' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead for i in ./ac_config_aux/config.guess ./ac_config_aux/config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/buildd/minc-2.1.00' if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: debian/patches/01_mincedit-sensible-viewer.diff debian/patches/03_mincview.diff debian/patches/decompress-whole-file.diff Trying patch debian/patches/01_mincedit-sensible-viewer.diff at level 1 ... success. Trying patch debian/patches/03_mincview.diff at level 1 ... 0 ... success. Trying patch debian/patches/decompress-whole-file.diff at level 1 ... 0 ... success. if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi make[1]: Entering directory `/build/buildd/minc-2.1.00' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead if test -e /usr/share/misc/config.guess ; then \ for i in ./ac_config_aux/config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./ac_config_aux/config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi make[1]: Leaving directory `/build/buildd/minc-2.1.00' if test -e /usr/share/misc/config.guess ; then \ for i in ./ac_config_aux/config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./ac_config_aux/config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/buildd/minc-2.1.00/./configure mkdir -p . cd . && CFLAGS="-I/usr/include/mpi" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" /build/buildd/minc-2.1.00/./configure --build=arm-linux-gnueabi --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/minc" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --enable-shared --enable-minc2 --enable-acr-nema CFLAGS="-I/usr/include/mpi" configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules, --enable-minc2 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking whether gcc and cc understand -c and -o together... yes checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking for flex... no checking for lex... no checking for bison... no checking for byacc... no checking whether time.h and sys/time.h may both be included... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/stat.h... (cached) yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking values.h usability... yes checking values.h presence... yes checking for values.h... yes checking for int32_t... yes checking for int16_t... yes checking build system type... arm-unknown-linux-gnueabi checking host system type... arm-unknown-linux-gnueabi checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... (cached) no checking whether accepts -g... (cached) no checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for pod2man... /usr/bin/pod2man checking for library m... yes checking for library netcdf... yes checking for library z... yes checking for library hdf5... yes checking for strdup... yes checking for mkstemp... yes checking for tempnam... yes checking for tmpnam... yes checking for getpwnam... yes checking for select... yes checking for strerror... yes checking for sysconf... yes checking for pid_t... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for system... yes checking for popen... yes configure: creating ./config.status config.status: creating Makefile config.status: creating epm-header config.status: creating doc/Makefile config.status: creating testdir/Makefile config.status: creating libsrc2/test/Makefile config.status: creating volume_io/Makefile config.status: creating volume_io/Documentation/Makefile config.status: creating volume_io/Testing/Makefile config.status: creating progs/xfm/xfmflip config.status: creating progs/minccomplete/minccomplete config.status: creating progs/minchistory/minchistory config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules, --enable-minc2 touch debian/stamp-autotools /usr/bin/make -C . all make[1]: Entering directory `/build/buildd/minc-2.1.00' /usr/bin/make all-recursive make[2]: Entering directory `/build/buildd/minc-2.1.00' Making all in . make[3]: Entering directory `/build/buildd/minc-2.1.00' /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/ParseArgv.lo libsrc/ParseArgv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/ParseArgv.c -fPIC -DPIC -o libsrc/.libs/ParseArgv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/ParseArgv.c -o libsrc/ParseArgv.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/dim_conversion.lo libsrc/dim_conversion.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/dim_conversion.c -fPIC -DPIC -o libsrc/.libs/dim_conversion.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/dim_conversion.c -o libsrc/dim_conversion.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/image_conversion.lo libsrc/image_conversion.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/image_conversion.c -fPIC -DPIC -o libsrc/.libs/image_conversion.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/image_conversion.c -o libsrc/image_conversion.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/minc_convenience.lo libsrc/minc_convenience.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/minc_convenience.c -fPIC -DPIC -o libsrc/.libs/minc_convenience.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/minc_convenience.c -o libsrc/minc_convenience.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/minc_error.lo libsrc/minc_error.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/minc_error.c -fPIC -DPIC -o libsrc/.libs/minc_error.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/minc_error.c -o libsrc/minc_error.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/nd_loop.lo libsrc/nd_loop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/nd_loop.c -fPIC -DPIC -o libsrc/.libs/nd_loop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/nd_loop.c -o libsrc/nd_loop.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/netcdf_convenience.lo libsrc/netcdf_convenience.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/netcdf_convenience.c -fPIC -DPIC -o libsrc/.libs/netcdf_convenience.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/netcdf_convenience.c -o libsrc/netcdf_convenience.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/time_stamp.lo libsrc/time_stamp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/time_stamp.c -fPIC -DPIC -o libsrc/.libs/time_stamp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/time_stamp.c -o libsrc/time_stamp.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/value_conversion.lo libsrc/value_conversion.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/value_conversion.c -fPIC -DPIC -o libsrc/.libs/value_conversion.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/value_conversion.c -o libsrc/value_conversion.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/voxel_loop.lo libsrc/voxel_loop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/voxel_loop.c -fPIC -DPIC -o libsrc/.libs/voxel_loop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/voxel_loop.c -o libsrc/voxel_loop.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/hdf_convenience.lo libsrc/hdf_convenience.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/hdf_convenience.c -fPIC -DPIC -o libsrc/.libs/hdf_convenience.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/hdf_convenience.c -o libsrc/hdf_convenience.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/minc_compat.lo libsrc/minc_compat.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/minc_compat.c -fPIC -DPIC -o libsrc/.libs/minc_compat.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/minc_compat.c -o libsrc/minc_compat.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc/minc_simple.lo libsrc/minc_simple.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/minc_simple.c -fPIC -DPIC -o libsrc/.libs/minc_simple.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc/minc_simple.c -o libsrc/minc_simple.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/convert.lo libsrc2/convert.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/convert.c -fPIC -DPIC -o libsrc2/.libs/convert.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/convert.c:17: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/convert.c -o libsrc2/convert.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/datatype.lo libsrc2/datatype.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/datatype.c -fPIC -DPIC -o libsrc2/.libs/datatype.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/datatype.c:8: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/datatype.c -o libsrc2/datatype.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/dimension.lo libsrc2/dimension.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/dimension.c -fPIC -DPIC -o libsrc2/.libs/dimension.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/dimension.c:12: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/dimension.c -o libsrc2/dimension.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/free.lo libsrc2/free.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/free.c -fPIC -DPIC -o libsrc2/.libs/free.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/free.c -o libsrc2/free.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/grpattr.lo libsrc2/grpattr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/grpattr.c -fPIC -DPIC -o libsrc2/.libs/grpattr.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/grpattr.c:10: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/grpattr.c -o libsrc2/grpattr.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/hyper.lo libsrc2/hyper.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/hyper.c -fPIC -DPIC -o libsrc2/.libs/hyper.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/hyper.c:10: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/hyper.c -o libsrc2/hyper.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/label.lo libsrc2/label.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/label.c -fPIC -DPIC -o libsrc2/.libs/label.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/label.c:18: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/label.c -o libsrc2/label.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/m2util.lo libsrc2/m2util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/m2util.c -fPIC -DPIC -o libsrc2/.libs/m2util.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/m2util.c:12: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libsrc2/m2util.c: In function 'minc_update_thumbnail': libsrc2/m2util.c:1627:32: warning: passing argument 4 of 'H5Sselect_elements' from incompatible pointer type [enabled by default] /usr/include/H5Spublic.h:128:15: note: expected 'const hsize_t *' but argument is of type 'const hsize_t **' libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/m2util.c -o libsrc2/m2util.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/record.lo libsrc2/record.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/record.c -fPIC -DPIC -o libsrc2/.libs/record.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/record.c:8: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/record.c -o libsrc2/record.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/slice.lo libsrc2/slice.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/slice.c -fPIC -DPIC -o libsrc2/.libs/slice.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/slice.c:20: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libsrc2/slice.c: In function 'mirw_slice_minmax': libsrc2/slice.c:87:5: warning: passing argument 4 of 'H5Sselect_elements' from incompatible pointer type [enabled by default] /usr/include/H5Spublic.h:128:15: note: expected 'const hsize_t *' but argument is of type 'const hsize_t **' libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/slice.c -o libsrc2/slice.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/valid.lo libsrc2/valid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/valid.c -fPIC -DPIC -o libsrc2/.libs/valid.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/valid.c:15: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/valid.c -o libsrc2/valid.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/volprops.lo libsrc2/volprops.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/volprops.c -fPIC -DPIC -o libsrc2/.libs/volprops.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/volprops.c:20: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/volprops.c -o libsrc2/volprops.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o libsrc2/volume.lo libsrc2/volume.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/volume.c -fPIC -DPIC -o libsrc2/.libs/volume.o In file included from libsrc2/../libsrc/minc_private.h:78:0, from libsrc2/minc2_private.h:178, from libsrc2/volume.c:13: ./config.h:5:0: warning: "H5Acreate_vers" redefined [enabled by default] /usr/include/H5version.h:46:0: note: this is the location of the previous definition libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c libsrc2/volume.c -o libsrc2/volume.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -version-info 2:3:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libminc2.la -rpath /usr/lib libsrc/ParseArgv.lo libsrc/dim_conversion.lo libsrc/image_conversion.lo libsrc/minc_convenience.lo libsrc/minc_error.lo libsrc/nd_loop.lo libsrc/netcdf_convenience.lo libsrc/time_stamp.lo libsrc/value_conversion.lo libsrc/voxel_loop.lo libsrc/hdf_convenience.lo libsrc/minc_compat.lo libsrc/minc_simple.lo libsrc2/convert.lo libsrc2/datatype.lo libsrc2/dimension.lo libsrc2/free.lo libsrc2/grpattr.lo libsrc2/hyper.lo libsrc2/label.lo libsrc2/m2util.lo libsrc2/record.lo libsrc2/slice.lo libsrc2/valid.lo libsrc2/volprops.lo libsrc2/volume.lo -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -shared libsrc/.libs/ParseArgv.o libsrc/.libs/dim_conversion.o libsrc/.libs/image_conversion.o libsrc/.libs/minc_convenience.o libsrc/.libs/minc_error.o libsrc/.libs/nd_loop.o libsrc/.libs/netcdf_convenience.o libsrc/.libs/time_stamp.o libsrc/.libs/value_conversion.o libsrc/.libs/voxel_loop.o libsrc/.libs/hdf_convenience.o libsrc/.libs/minc_compat.o libsrc/.libs/minc_simple.o libsrc2/.libs/convert.o libsrc2/.libs/datatype.o libsrc2/.libs/dimension.o libsrc2/.libs/free.o libsrc2/.libs/grpattr.o libsrc2/.libs/hyper.o libsrc2/.libs/label.o libsrc2/.libs/m2util.o libsrc2/.libs/record.o libsrc2/.libs/slice.o libsrc2/.libs/valid.o libsrc2/.libs/volprops.o libsrc2/.libs/volume.o /usr/lib/libhdf5.so -lz -lnetcdf -lm -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libminc2.so.1 -o .libs/libminc2.so.1.1.3 libtool: link: (cd ".libs" && rm -f "libminc2.so.1" && ln -s "libminc2.so.1.1.3" "libminc2.so.1") libtool: link: (cd ".libs" && rm -f "libminc2.so" && ln -s "libminc2.so.1.1.3" "libminc2.so") libtool: link: ar cru .libs/libminc2.a libsrc/ParseArgv.o libsrc/dim_conversion.o libsrc/image_conversion.o libsrc/minc_convenience.o libsrc/minc_error.o libsrc/nd_loop.o libsrc/netcdf_convenience.o libsrc/time_stamp.o libsrc/value_conversion.o libsrc/voxel_loop.o libsrc/hdf_convenience.o libsrc/minc_compat.o libsrc/minc_simple.o libsrc2/convert.o libsrc2/datatype.o libsrc2/dimension.o libsrc2/free.o libsrc2/grpattr.o libsrc2/hyper.o libsrc2/label.o libsrc2/m2util.o libsrc2/record.o libsrc2/slice.o libsrc2/valid.o libsrc2/volprops.o libsrc2/volume.o libtool: link: ranlib .libs/libminc2.a libtool: link: ( cd ".libs" && rm -f "libminc2.la" && ln -s "../libminc2.la" "libminc2.la" ) /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/colour.lo volume_io/Geometry/colour.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/colour.c -fPIC -DPIC -o volume_io/Geometry/.libs/colour.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/colour.c -o volume_io/Geometry/colour.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/colour_def.lo volume_io/Geometry/colour_def.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/colour_def.c -fPIC -DPIC -o volume_io/Geometry/.libs/colour_def.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/colour_def.c -o volume_io/Geometry/colour_def.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/gaussian.lo volume_io/Geometry/gaussian.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/gaussian.c -fPIC -DPIC -o volume_io/Geometry/.libs/gaussian.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/gaussian.c -o volume_io/Geometry/gaussian.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/inverse.lo volume_io/Geometry/inverse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/inverse.c -fPIC -DPIC -o volume_io/Geometry/.libs/inverse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/inverse.c -o volume_io/Geometry/inverse.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/newton.lo volume_io/Geometry/newton.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/newton.c -fPIC -DPIC -o volume_io/Geometry/.libs/newton.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/newton.c -o volume_io/Geometry/newton.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/points.lo volume_io/Geometry/points.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/points.c -fPIC -DPIC -o volume_io/Geometry/.libs/points.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/points.c -o volume_io/Geometry/points.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/splines.lo volume_io/Geometry/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/splines.c -fPIC -DPIC -o volume_io/Geometry/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/splines.c -o volume_io/Geometry/splines.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/tensors.lo volume_io/Geometry/tensors.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/tensors.c -fPIC -DPIC -o volume_io/Geometry/.libs/tensors.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/tensors.c -o volume_io/Geometry/tensors.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Geometry/transforms.lo volume_io/Geometry/transforms.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/transforms.c -fPIC -DPIC -o volume_io/Geometry/.libs/transforms.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Geometry/transforms.c -o volume_io/Geometry/transforms.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/MNI_formats/gen_xf_io.lo volume_io/MNI_formats/gen_xf_io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/gen_xf_io.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/gen_xf_io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/gen_xf_io.c -o volume_io/MNI_formats/gen_xf_io.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/MNI_formats/gen_xfs.lo volume_io/MNI_formats/gen_xfs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/gen_xfs.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/gen_xfs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/gen_xfs.c -o volume_io/MNI_formats/gen_xfs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/MNI_formats/grid_transforms.lo volume_io/MNI_formats/grid_transforms.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/grid_transforms.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/grid_transforms.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/grid_transforms.c -o volume_io/MNI_formats/grid_transforms.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/MNI_formats/mni_io.lo volume_io/MNI_formats/mni_io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/mni_io.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/mni_io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/mni_io.c -o volume_io/MNI_formats/mni_io.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/MNI_formats/tag_points.lo volume_io/MNI_formats/tag_points.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/tag_points.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/tag_points.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/tag_points.c -o volume_io/MNI_formats/tag_points.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/MNI_formats/thin_plate_spline.lo volume_io/MNI_formats/thin_plate_spline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/thin_plate_spline.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/thin_plate_spline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/MNI_formats/thin_plate_spline.c -o volume_io/MNI_formats/thin_plate_spline.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Prog_utils/alloc.lo volume_io/Prog_utils/alloc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/alloc.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/alloc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/alloc.c -o volume_io/Prog_utils/alloc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Prog_utils/alloc_check.lo volume_io/Prog_utils/alloc_check.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/alloc_check.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/alloc_check.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/alloc_check.c -o volume_io/Prog_utils/alloc_check.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Prog_utils/arrays.lo volume_io/Prog_utils/arrays.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/arrays.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/arrays.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/arrays.c -o volume_io/Prog_utils/arrays.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Prog_utils/files.lo volume_io/Prog_utils/files.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/files.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/files.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/files.c -o volume_io/Prog_utils/files.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Prog_utils/print.lo volume_io/Prog_utils/print.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/print.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/print.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/print.c -o volume_io/Prog_utils/print.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Prog_utils/progress.lo volume_io/Prog_utils/progress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/progress.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/progress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/progress.c -o volume_io/Prog_utils/progress.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Prog_utils/string.lo volume_io/Prog_utils/string.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/string.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/string.c -o volume_io/Prog_utils/string.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Prog_utils/time.lo volume_io/Prog_utils/time.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/time.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/time.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Prog_utils/time.c -o volume_io/Prog_utils/time.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/evaluate.lo volume_io/Volumes/evaluate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/evaluate.c -fPIC -DPIC -o volume_io/Volumes/.libs/evaluate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/evaluate.c -o volume_io/Volumes/evaluate.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/get_hyperslab.lo volume_io/Volumes/get_hyperslab.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/get_hyperslab.c -fPIC -DPIC -o volume_io/Volumes/.libs/get_hyperslab.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/get_hyperslab.c -o volume_io/Volumes/get_hyperslab.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/input_free.lo volume_io/Volumes/input_free.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/input_free.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_free.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/input_free.c -o volume_io/Volumes/input_free.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/input_mnc.lo volume_io/Volumes/input_mnc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/input_mnc.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_mnc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/input_mnc.c -o volume_io/Volumes/input_mnc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/input_volume.lo volume_io/Volumes/input_volume.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/input_volume.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_volume.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/input_volume.c -o volume_io/Volumes/input_volume.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/multidim_arrays.lo volume_io/Volumes/multidim_arrays.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/multidim_arrays.c -fPIC -DPIC -o volume_io/Volumes/.libs/multidim_arrays.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/multidim_arrays.c -o volume_io/Volumes/multidim_arrays.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/output_mnc.lo volume_io/Volumes/output_mnc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/output_mnc.c -fPIC -DPIC -o volume_io/Volumes/.libs/output_mnc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/output_mnc.c -o volume_io/Volumes/output_mnc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/output_volume.lo volume_io/Volumes/output_volume.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/output_volume.c -fPIC -DPIC -o volume_io/Volumes/.libs/output_volume.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/output_volume.c -o volume_io/Volumes/output_volume.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/set_hyperslab.lo volume_io/Volumes/set_hyperslab.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/set_hyperslab.c -fPIC -DPIC -o volume_io/Volumes/.libs/set_hyperslab.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/set_hyperslab.c -o volume_io/Volumes/set_hyperslab.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/volume_cache.lo volume_io/Volumes/volume_cache.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/volume_cache.c -fPIC -DPIC -o volume_io/Volumes/.libs/volume_cache.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/volume_cache.c -o volume_io/Volumes/volume_cache.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o volume_io/Volumes/volumes.lo volume_io/Volumes/volumes.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/volumes.c -fPIC -DPIC -o volume_io/Volumes/.libs/volumes.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c volume_io/Volumes/volumes.c -o volume_io/Volumes/volumes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -version-info 2:2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libvolume_io2.la -rpath /usr/lib volume_io/Geometry/colour.lo volume_io/Geometry/colour_def.lo volume_io/Geometry/gaussian.lo volume_io/Geometry/inverse.lo volume_io/Geometry/newton.lo volume_io/Geometry/points.lo volume_io/Geometry/splines.lo volume_io/Geometry/tensors.lo volume_io/Geometry/transforms.lo volume_io/MNI_formats/gen_xf_io.lo volume_io/MNI_formats/gen_xfs.lo volume_io/MNI_formats/grid_transforms.lo volume_io/MNI_formats/mni_io.lo volume_io/MNI_formats/tag_points.lo volume_io/MNI_formats/thin_plate_spline.lo volume_io/Prog_utils/alloc.lo volume_io/Prog_utils/alloc_check.lo volume_io/Prog_utils/arrays.lo volume_io/Prog_utils/files.lo volume_io/Prog_utils/print.lo volume_io/Prog_utils/progress.lo volume_io/Prog_utils/string.lo volume_io/Prog_utils/time.lo volume_io/Volumes/evaluate.lo volume_io/Volumes/get_hyperslab.lo volume_io/Volumes/input_free.lo volume_io/Volumes/input_mnc.lo volume_io/Volumes/input_volume.lo volume_io/Volumes/multidim_arrays.lo volume_io/Volumes/output_mnc.lo volume_io/Volumes/output_volume.lo volume_io/Volumes/set_hyperslab.lo volume_io/Volumes/volume_cache.lo volume_io/Volumes/volumes.lo -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -shared volume_io/Geometry/.libs/colour.o volume_io/Geometry/.libs/colour_def.o volume_io/Geometry/.libs/gaussian.o volume_io/Geometry/.libs/inverse.o volume_io/Geometry/.libs/newton.o volume_io/Geometry/.libs/points.o volume_io/Geometry/.libs/splines.o volume_io/Geometry/.libs/tensors.o volume_io/Geometry/.libs/transforms.o volume_io/MNI_formats/.libs/gen_xf_io.o volume_io/MNI_formats/.libs/gen_xfs.o volume_io/MNI_formats/.libs/grid_transforms.o volume_io/MNI_formats/.libs/mni_io.o volume_io/MNI_formats/.libs/tag_points.o volume_io/MNI_formats/.libs/thin_plate_spline.o volume_io/Prog_utils/.libs/alloc.o volume_io/Prog_utils/.libs/alloc_check.o volume_io/Prog_utils/.libs/arrays.o volume_io/Prog_utils/.libs/files.o volume_io/Prog_utils/.libs/print.o volume_io/Prog_utils/.libs/progress.o volume_io/Prog_utils/.libs/string.o volume_io/Prog_utils/.libs/time.o volume_io/Volumes/.libs/evaluate.o volume_io/Volumes/.libs/get_hyperslab.o volume_io/Volumes/.libs/input_free.o volume_io/Volumes/.libs/input_mnc.o volume_io/Volumes/.libs/input_volume.o volume_io/Volumes/.libs/multidim_arrays.o volume_io/Volumes/.libs/output_mnc.o volume_io/Volumes/.libs/output_volume.o volume_io/Volumes/.libs/set_hyperslab.o volume_io/Volumes/.libs/volume_cache.o volume_io/Volumes/.libs/volumes.o /usr/lib/libhdf5.so -lz -lnetcdf -lm -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libvolume_io2.so.1 -o .libs/libvolume_io2.so.1.1.2 libtool: link: (cd ".libs" && rm -f "libvolume_io2.so.1" && ln -s "libvolume_io2.so.1.1.2" "libvolume_io2.so.1") libtool: link: (cd ".libs" && rm -f "libvolume_io2.so" && ln -s "libvolume_io2.so.1.1.2" "libvolume_io2.so") libtool: link: ar cru .libs/libvolume_io2.a volume_io/Geometry/colour.o volume_io/Geometry/colour_def.o volume_io/Geometry/gaussian.o volume_io/Geometry/inverse.o volume_io/Geometry/newton.o volume_io/Geometry/points.o volume_io/Geometry/splines.o volume_io/Geometry/tensors.o volume_io/Geometry/transforms.o volume_io/MNI_formats/gen_xf_io.o volume_io/MNI_formats/gen_xfs.o volume_io/MNI_formats/grid_transforms.o volume_io/MNI_formats/mni_io.o volume_io/MNI_formats/tag_points.o volume_io/MNI_formats/thin_plate_spline.o volume_io/Prog_utils/alloc.o volume_io/Prog_utils/alloc_check.o volume_io/Prog_utils/arrays.o volume_io/Prog_utils/files.o volume_io/Prog_utils/print.o volume_io/Prog_utils/progress.o volume_io/Prog_utils/string.o volume_io/Prog_utils/time.o volume_io/Volumes/evaluate.o volume_io/Volumes/get_hyperslab.o volume_io/Volumes/input_free.o volume_io/Volumes/input_mnc.o volume_io/Volumes/input_volume.o volume_io/Volumes/multidim_arrays.o volume_io/Volumes/output_mnc.o volume_io/Volumes/output_volume.o volume_io/Volumes/set_hyperslab.o volume_io/Volumes/volume_cache.o volume_io/Volumes/volumes.o libtool: link: ranlib .libs/libvolume_io2.a libtool: link: ( cd ".libs" && rm -f "libvolume_io2.la" && ln -s "../libvolume_io2.la" "libvolume_io2.la" ) /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/acr_io.lo conversion/Acr_nema/acr_io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/acr_io.c -fPIC -DPIC -o conversion/Acr_nema/.libs/acr_io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/acr_io.c -o conversion/Acr_nema/acr_io.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/dicom_client_routines.lo conversion/Acr_nema/dicom_client_routines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/dicom_client_routines.c -fPIC -DPIC -o conversion/Acr_nema/.libs/dicom_client_routines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/dicom_client_routines.c -o conversion/Acr_nema/dicom_client_routines.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/dicom_network.lo conversion/Acr_nema/dicom_network.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/dicom_network.c -fPIC -DPIC -o conversion/Acr_nema/.libs/dicom_network.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/dicom_network.c -o conversion/Acr_nema/dicom_network.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/element.lo conversion/Acr_nema/element.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/element.c -fPIC -DPIC -o conversion/Acr_nema/.libs/element.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/element.c -o conversion/Acr_nema/element.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/file_io.lo conversion/Acr_nema/file_io.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/file_io.c -fPIC -DPIC -o conversion/Acr_nema/.libs/file_io.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/file_io.c -o conversion/Acr_nema/file_io.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/globals.lo conversion/Acr_nema/globals.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/globals.c -fPIC -DPIC -o conversion/Acr_nema/.libs/globals.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/globals.c -o conversion/Acr_nema/globals.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/group.lo conversion/Acr_nema/group.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/group.c -fPIC -DPIC -o conversion/Acr_nema/.libs/group.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/group.c -o conversion/Acr_nema/group.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/message.lo conversion/Acr_nema/message.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/message.c -fPIC -DPIC -o conversion/Acr_nema/.libs/message.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/message.c -o conversion/Acr_nema/message.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/value_repr.lo conversion/Acr_nema/value_repr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/value_repr.c -fPIC -DPIC -o conversion/Acr_nema/.libs/value_repr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c conversion/Acr_nema/value_repr.c -o conversion/Acr_nema/value_repr.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o libacr_nema.la -rpath /usr/lib conversion/Acr_nema/acr_io.lo conversion/Acr_nema/dicom_client_routines.lo conversion/Acr_nema/dicom_network.lo conversion/Acr_nema/element.lo conversion/Acr_nema/file_io.lo conversion/Acr_nema/globals.lo conversion/Acr_nema/group.lo conversion/Acr_nema/message.lo conversion/Acr_nema/value_repr.lo -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -shared conversion/Acr_nema/.libs/acr_io.o conversion/Acr_nema/.libs/dicom_client_routines.o conversion/Acr_nema/.libs/dicom_network.o conversion/Acr_nema/.libs/element.o conversion/Acr_nema/.libs/file_io.o conversion/Acr_nema/.libs/globals.o conversion/Acr_nema/.libs/group.o conversion/Acr_nema/.libs/message.o conversion/Acr_nema/.libs/value_repr.o /usr/lib/libhdf5.so -lz -lnetcdf -lm -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libacr_nema.so.0 -o .libs/libacr_nema.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libacr_nema.so.0" && ln -s "libacr_nema.so.0.0.0" "libacr_nema.so.0") libtool: link: (cd ".libs" && rm -f "libacr_nema.so" && ln -s "libacr_nema.so.0.0.0" "libacr_nema.so") libtool: link: ar cru .libs/libacr_nema.a conversion/Acr_nema/acr_io.o conversion/Acr_nema/dicom_client_routines.o conversion/Acr_nema/dicom_network.o conversion/Acr_nema/element.o conversion/Acr_nema/file_io.o conversion/Acr_nema/globals.o conversion/Acr_nema/group.o conversion/Acr_nema/message.o conversion/Acr_nema/value_repr.o libtool: link: ranlib .libs/libacr_nema.a libtool: link: ( cd ".libs" && rm -f "libacr_nema.la" && ln -s "../libacr_nema.la" "libacr_nema.la" ) gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/coordinates/voxeltoworld.o progs/coordinates/voxeltoworld.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o voxeltoworld progs/coordinates/voxeltoworld.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/voxeltoworld progs/coordinates/voxeltoworld.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/coordinates/worldtovoxel.o progs/coordinates/worldtovoxel.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o worldtovoxel progs/coordinates/worldtovoxel.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/worldtovoxel progs/coordinates/worldtovoxel.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/minc_modify_header/minc_modify_header.o progs/minc_modify_header/minc_modify_header.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o minc_modify_header progs/minc_modify_header/minc_modify_header.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/minc_modify_header progs/minc_modify_header/minc_modify_header.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincaverage/mincaverage.o progs/mincaverage/mincaverage.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincaverage progs/mincaverage/mincaverage.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincaverage progs/mincaverage/mincaverage.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-minccalc.o `test -f 'progs/minccalc/minccalc.c' || echo './'`progs/minccalc/minccalc.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-gram.o `test -f 'progs/minccalc/gram.c' || echo './'`progs/minccalc/gram.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-eval.o `test -f 'progs/minccalc/eval.c' || echo './'`progs/minccalc/eval.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-ident.o `test -f 'progs/minccalc/ident.c' || echo './'`progs/minccalc/ident.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-lex.o `test -f 'progs/minccalc/lex.c' || echo './'`progs/minccalc/lex.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-node.o `test -f 'progs/minccalc/node.c' || echo './'`progs/minccalc/node.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-optim.o `test -f 'progs/minccalc/optim.c' || echo './'`progs/minccalc/optim.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-scalar.o `test -f 'progs/minccalc/scalar.c' || echo './'`progs/minccalc/scalar.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-sym.o `test -f 'progs/minccalc/sym.c' || echo './'`progs/minccalc/sym.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -c -o progs/minccalc/minccalc-vector.o `test -f 'progs/minccalc/vector.c' || echo './'`progs/minccalc/vector.c /bin/bash ./libtool --tag=CC --mode=link gcc -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o minccalc progs/minccalc/minccalc-minccalc.o progs/minccalc/minccalc-gram.o progs/minccalc/minccalc-eval.o progs/minccalc/minccalc-ident.o progs/minccalc/minccalc-lex.o progs/minccalc/minccalc-node.o progs/minccalc/minccalc-optim.o progs/minccalc/minccalc-scalar.o progs/minccalc/minccalc-sym.o progs/minccalc/minccalc-vector.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -Iprogs/minccalc -I./progs/minccalc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/minccalc progs/minccalc/minccalc-minccalc.o progs/minccalc/minccalc-gram.o progs/minccalc/minccalc-eval.o progs/minccalc/minccalc-ident.o progs/minccalc/minccalc-lex.o progs/minccalc/minccalc-node.o progs/minccalc/minccalc-optim.o progs/minccalc/minccalc-scalar.o progs/minccalc/minccalc-sym.o progs/minccalc/minccalc-vector.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/minccmp/minccmp.o progs/minccmp/minccmp.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o minccmp progs/minccmp/minccmp.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/minccmp progs/minccmp/minccmp.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincconcat/mincconcat.o progs/mincconcat/mincconcat.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincconcat progs/mincconcat/mincconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincconcat progs/mincconcat/mincconcat.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/minccopy/minccopy.o progs/minccopy/minccopy.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o minccopy progs/minccopy/minccopy.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/minccopy progs/minccopy/minccopy.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincexpand/mincexpand.o progs/mincexpand/mincexpand.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincexpand progs/mincexpand/mincexpand.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincexpand progs/mincexpand/mincexpand.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincextract/mincextract.o progs/mincextract/mincextract.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincextract progs/mincextract/mincextract.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincextract progs/mincextract/mincextract.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincgen/escapes.o progs/mincgen/escapes.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincgen/genlib.o progs/mincgen/genlib.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincgen/getfill.o progs/mincgen/getfill.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincgen/init.o progs/mincgen/init.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincgen/load.o progs/mincgen/load.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincgen/main.o progs/mincgen/main.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincgen/ncgentab.o progs/mincgen/ncgentab.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincgen/ncgenyy.o progs/mincgen/ncgenyy.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincgen progs/mincgen/escapes.o progs/mincgen/genlib.o progs/mincgen/getfill.o progs/mincgen/init.o progs/mincgen/load.o progs/mincgen/main.o progs/mincgen/ncgentab.o progs/mincgen/ncgenyy.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincgen progs/mincgen/escapes.o progs/mincgen/genlib.o progs/mincgen/getfill.o progs/mincgen/init.o progs/mincgen/load.o progs/mincgen/main.o progs/mincgen/ncgentab.o progs/mincgen/ncgenyy.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincinfo/mincinfo.o progs/mincinfo/mincinfo.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincinfo progs/mincinfo/mincinfo.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincinfo progs/mincinfo/mincinfo.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/minclookup/minclookup.o progs/minclookup/minclookup.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o minclookup progs/minclookup/minclookup.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/minclookup progs/minclookup/minclookup.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincmakescalar/mincmakescalar.o progs/mincmakescalar/mincmakescalar.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincmakescalar progs/mincmakescalar/mincmakescalar.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincmakescalar progs/mincmakescalar/mincmakescalar.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincmakevector/mincmakevector.o progs/mincmakevector/mincmakevector.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincmakevector progs/mincmakevector/mincmakevector.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincmakevector progs/mincmakevector/mincmakevector.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincmath/mincmath.o progs/mincmath/mincmath.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincmath progs/mincmath/mincmath.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincmath progs/mincmath/mincmath.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincresample/mincresample.o progs/mincresample/mincresample.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincresample/resample_volumes.o progs/mincresample/resample_volumes.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/Proglib/convert_origin_to_start.o progs/Proglib/convert_origin_to_start.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincresample progs/mincresample/mincresample.o progs/mincresample/resample_volumes.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincresample progs/mincresample/mincresample.o progs/mincresample/resample_volumes.o progs/Proglib/convert_origin_to_start.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincreshape/mincreshape.o progs/mincreshape/mincreshape.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincreshape/copy_data.o progs/mincreshape/copy_data.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincreshape progs/mincreshape/mincreshape.o progs/mincreshape/copy_data.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincreshape progs/mincreshape/mincreshape.o progs/mincreshape/copy_data.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincstats/mincstats.o progs/mincstats/mincstats.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincstats progs/mincstats/mincstats.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincstats progs/mincstats/mincstats.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/minctoraw/minctoraw.o progs/minctoraw/minctoraw.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o minctoraw progs/minctoraw/minctoraw.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/minctoraw progs/minctoraw/minctoraw.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincview/invert_raw_image.o progs/mincview/invert_raw_image.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o invert_raw_image progs/mincview/invert_raw_image.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/invert_raw_image progs/mincview/invert_raw_image.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincwindow/mincwindow.o progs/mincwindow/mincwindow.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincwindow progs/mincwindow/mincwindow.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincwindow progs/mincwindow/mincwindow.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/rawtominc/rawtominc.o progs/rawtominc/rawtominc.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/xfm/transformtags.o progs/xfm/transformtags.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o transformtags progs/xfm/transformtags.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/transformtags progs/xfm/transformtags.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/xfm/xfm2def.o progs/xfm/xfm2def.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o xfm2def progs/xfm/xfm2def.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/xfm2def progs/xfm/xfm2def.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/xfm/xfmconcat.o progs/xfm/xfmconcat.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o xfmconcat progs/xfm/xfmconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/xfmconcat progs/xfm/xfmconcat.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/xfm/xfminvert.o progs/xfm/xfminvert.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o xfminvert progs/xfm/xfminvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/xfminvert progs/xfm/xfminvert.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincconvert/mincconvert.o progs/mincconvert/mincconvert.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincconvert progs/mincconvert/mincconvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincconvert progs/mincconvert/mincconvert.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincdump/mincdump.o progs/mincdump/mincdump.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincdump/vardata.o progs/mincdump/vardata.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincdump/dumplib.o progs/mincdump/dumplib.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/ecattominc/ecattominc.o conversion/ecattominc/ecattominc.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/ecattominc/insertblood.o conversion/ecattominc/insertblood.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/ecattominc/ecat_file.o conversion/ecattominc/ecat_file.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/ecattominc/machine_indep.o conversion/ecattominc/machine_indep.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/minctoecat/minctoecat.o conversion/minctoecat/minctoecat.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/minctoecat/ecat_write.o conversion/minctoecat/ecat_write.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/minctoecat/machine_indep.o conversion/minctoecat/machine_indep.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/nifti1/mnc2nii.o conversion/nifti1/mnc2nii.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/nifti1/nifti1_io.o conversion/nifti1/nifti1_io.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/nifti1/znzlib.o conversion/nifti1/znzlib.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mnc2nii conversion/nifti1/mnc2nii.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mnc2nii conversion/nifti1/mnc2nii.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/nifti1/nii2mnc.o conversion/nifti1/nii2mnc.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o nii2mnc conversion/nifti1/nii2mnc.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/nii2mnc conversion/nifti1/nii2mnc.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/micropet/upet2mnc.o conversion/micropet/upet2mnc.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o upet2mnc conversion/micropet/upet2mnc.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/upet2mnc conversion/micropet/upet2mnc.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/dcm2mnc/dcm2mnc.o conversion/dcm2mnc/dcm2mnc.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/dcm2mnc/dicom_to_minc.o conversion/dcm2mnc/dicom_to_minc.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/dcm2mnc/siemens_to_dicom.o conversion/dcm2mnc/siemens_to_dicom.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/dcm2mnc/dicom_read.o conversion/dcm2mnc/dicom_read.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/dcm2mnc/minc_file.o conversion/dcm2mnc/minc_file.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/dcm2mnc/progress.o conversion/dcm2mnc/progress.c gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/dcm2mnc/string_to_filename.o conversion/dcm2mnc/string_to_filename.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o dcm2mnc conversion/dcm2mnc/dcm2mnc.o conversion/dcm2mnc/dicom_to_minc.o conversion/dcm2mnc/siemens_to_dicom.o conversion/dcm2mnc/dicom_read.o conversion/dcm2mnc/minc_file.o conversion/dcm2mnc/progress.o conversion/dcm2mnc/string_to_filename.o libacr_nema.la libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/dcm2mnc conversion/dcm2mnc/dcm2mnc.o conversion/dcm2mnc/dicom_to_minc.o conversion/dcm2mnc/siemens_to_dicom.o conversion/dcm2mnc/dicom_read.o conversion/dcm2mnc/minc_file.o conversion/dcm2mnc/progress.o conversion/dcm2mnc/string_to_filename.o ./.libs/libacr_nema.so ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/vff2mnc/vff2mnc.o conversion/vff2mnc/vff2mnc.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o vff2mnc conversion/vff2mnc/vff2mnc.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/vff2mnc conversion/vff2mnc/vff2mnc.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/acr_test.o conversion/Acr_nema/acr_test.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o acr_test conversion/Acr_nema/acr_test.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/acr_test conversion/Acr_nema/acr_test.o ./.libs/libacr_nema.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/dump_acr_nema.o conversion/Acr_nema/dump_acr_nema.c conversion/Acr_nema/dump_acr_nema.c: In function 'main': conversion/Acr_nema/dump_acr_nema.c:215:33: warning: assignment from incompatible pointer type [enabled by default] /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o dump_acr_nema conversion/Acr_nema/dump_acr_nema.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/dump_acr_nema conversion/Acr_nema/dump_acr_nema.o ./.libs/libacr_nema.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/extract_acr_nema.o conversion/Acr_nema/extract_acr_nema.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_acr_nema conversion/Acr_nema/extract_acr_nema.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_acr_nema conversion/Acr_nema/extract_acr_nema.o ./.libs/libacr_nema.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/read_acr_nema.o conversion/Acr_nema/read_acr_nema.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o read_acr_nema conversion/Acr_nema/read_acr_nema.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/read_acr_nema conversion/Acr_nema/read_acr_nema.o ./.libs/libacr_nema.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/dicom_test.o conversion/Acr_nema/dicom_test.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o dicom_test conversion/Acr_nema/dicom_test.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/dicom_test conversion/Acr_nema/dicom_test.o ./.libs/libacr_nema.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/Acr_nema/copy_acr_nema.o conversion/Acr_nema/copy_acr_nema.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o copy_acr_nema conversion/Acr_nema/copy_acr_nema.o libacr_nema.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/copy_acr_nema conversion/Acr_nema/copy_acr_nema.o ./.libs/libacr_nema.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/image_filters/byte_swap.o conversion/image_filters/byte_swap.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o byte_swap conversion/image_filters/byte_swap.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/byte_swap conversion/image_filters/byte_swap.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o conversion/image_filters/extract.o conversion/image_filters/extract.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract conversion/image_filters/extract.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract conversion/image_filters/extract.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincexample/mincexample1.o progs/mincexample/mincexample1.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincexample1 progs/mincexample/mincexample1.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincexample1 progs/mincexample/mincexample1.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c -o progs/mincexample/mincexample2.o progs/mincexample/mincexample2.c /bin/bash ./libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o mincexample2 progs/mincexample/mincexample2.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mincexample2 progs/mincexample/mincexample2.o ./.libs/libvolume_io2.so ./.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm /usr/bin/pod2man --section=1 progs/minccomplete/minccomplete > progs/minccomplete/minccomplete.man1 /usr/bin/pod2man --section=1 progs/minchistory/minchistory > progs/minchistory/minchistory.man1 make[3]: Leaving directory `/build/buildd/minc-2.1.00' Making all in volume_io make[3]: Entering directory `/build/buildd/minc-2.1.00/volume_io' Making all in Documentation make[4]: Entering directory `/build/buildd/minc-2.1.00/volume_io/Documentation' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/minc-2.1.00/volume_io/Documentation' Making all in Testing make[4]: Entering directory `/build/buildd/minc-2.1.00/volume_io/Testing' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c example_modify.c /bin/bash ../../libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o example_modify example_modify.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/example_modify example_modify.o ../../.libs/libvolume_io2.so ../../.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c example_tags.c /bin/bash ../../libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o example_tags example_tags.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/example_tags example_tags.o ../../.libs/libvolume_io2.so ../../.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm gcc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -D_FORTIFY_SOURCE=2 -I/usr/include/mpi -c example_volume_io.c /bin/bash ../../libtool --tag=CC --mode=link gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z,relro -o example_volume_io example_volume_io.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: gcc -I/usr/include/mpi -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/example_volume_io example_volume_io.o ../../.libs/libvolume_io2.so ../../.libs/libminc2.so /usr/lib/libhdf5.so -lz -lnetcdf -lm make[4]: Leaving directory `/build/buildd/minc-2.1.00/volume_io/Testing' make[4]: Entering directory `/build/buildd/minc-2.1.00/volume_io' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/buildd/minc-2.1.00/volume_io' make[3]: Leaving directory `/build/buildd/minc-2.1.00/volume_io' Making all in testdir make[3]: Entering directory `/build/buildd/minc-2.1.00/testdir' cd . && chmod +x run_test_arg_parse.sh run_tests.sh run_test2.sh xfmconcat_01.sh xfmconcat_02.sh run_test_progs.sh make[3]: Leaving directory `/build/buildd/minc-2.1.00/testdir' Making all in doc make[3]: Entering directory `/build/buildd/minc-2.1.00/doc' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/minc-2.1.00/doc' Making all in libsrc2/test make[3]: Entering directory `/build/buildd/minc-2.1.00/libsrc2/test' cd . && chmod +x testminctools.sh make[3]: Leaving directory `/build/buildd/minc-2.1.00/libsrc2/test' make[2]: Leaving directory `/build/buildd/minc-2.1.00' make[1]: Leaving directory `/build/buildd/minc-2.1.00' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C doc docs make[1]: Entering directory `/build/buildd/minc-2.1.00/doc' latex prog_ref.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./prog_ref.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size10.clo)) No file prog_ref.aux. No file prog_ref.toc. [1] [2] [3] [4] [5] [6] (/usr/share/texmf-texlive/tex/latex/base/omscmr.fd) [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] (./prog_ref.aux) ) Output written on prog_ref.dvi (18 pages, 57980 bytes). Transcript written on prog_ref.log. latex prog_ref.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./prog_ref.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size10.clo)) (./prog_ref.aux) (./prog_ref.toc) [1] [2] [3] [4] [5] [6] (/usr/share/texmf-texlive/tex/latex/base/omscmr.fd) [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] (./prog_ref.aux) ) Output written on prog_ref.dvi (18 pages, 64764 bytes). Transcript written on prog_ref.log. dvips prog_ref.dvi -o prog_ref.ps This is dvips(k) 5.98 Copyright 2009 Radical Eye Software (www.radicaleye.com) ' TeX output 2011.12.29:1056' -> prog_ref.ps . [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] latex prog_guide.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./prog_guide.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size10.clo)) No file prog_guide.aux. No file prog_guide.toc. [1] [2] [3] [4] [5] (/usr/share/texmf-texlive/tex/latex/base/omscmr.fd) [6] [7] [8] [9] [10] [11] [12] (./prog_guide.aux) ) Output written on prog_guide.dvi (12 pages, 42568 bytes). Transcript written on prog_guide.log. latex prog_guide.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./prog_guide.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size10.clo)) (./prog_guide.aux) (./prog_guide.toc) [1] [2] [3] [4] [5] (/usr/share/texmf-texlive/tex/latex/base/omscmr.fd) [6] [7] [8] [9] [10] [11] [12] (./prog_guide.aux) ) Output written on prog_guide.dvi (12 pages, 50236 bytes). Transcript written on prog_guide.log. dvips prog_guide.dvi -o prog_guide.ps This is dvips(k) 5.98 Copyright 2009 Radical Eye Software (www.radicaleye.com) ' TeX output 2011.12.29:1056' -> prog_guide.ps . [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] make[1]: Leaving directory `/build/buildd/minc-2.1.00/doc' /usr/bin/make -C volume_io/Documentation docs make[1]: Entering directory `/build/buildd/minc-2.1.00/volume_io/Documentation' latex volume_io.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./volume_io.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/latex209.def Entering LaTeX 2.09 COMPATIBILITY MODE ************************************************************* !!WARNING!! !!WARNING!! !!WARNING!! !!WARNING!! This mode attempts to provide an emulation of the LaTeX 2.09 author environment so that OLD documents can be successfully processed. It should NOT be used for NEW documents! New documents should use Standard LaTeX conventions and start with the \documentclass command. Compatibility mode is UNLIKELY TO WORK with LaTeX 2.09 style files that change any internal macros, especially not with those that change the FONT SELECTION or OUTPUT ROUTINES. Therefore such style files MUST BE UPDATED to use Current Standard LaTeX: LaTeX2e. If you suspect that you may be using such a style file, which is probably very, very old by now, then you should attempt to get it updated by sending a copy of this error message to the author of that file. ************************************************************* (/usr/share/texmf-texlive/tex/latex/base/tracefnt.sty) (/usr/share/texmf-texlive/tex/latex/base/latexsym.sty)) (/usr/share/texmf-texlive/tex/latex/base/report.cls Document Class: report 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size10.clo)) No file volume_io.aux. (/usr/share/texmf-texlive/tex/latex/base/ulasy.fd) [0] No file volume_io.toc. [1] Chapter 1. [2] Chapter 2. [3] Chapter 3. [4] [5] Chapter 4. [6] [7] [8] [9] Chapter 5. [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 6. [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Chapter 7. [51] [52] [53] [54] [55] [56] Chapter 8. [57] [58] [59] [60] [61] [62] [63] Chapter 9. [64] [65] [66] (./volume_io.aux) ) Output written on volume_io.dvi (67 pages, 138136 bytes). Transcript written on volume_io.log. latex volume_io.tex This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) entering extended mode (./volume_io.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/latex209.def Entering LaTeX 2.09 COMPATIBILITY MODE ************************************************************* !!WARNING!! !!WARNING!! !!WARNING!! !!WARNING!! This mode attempts to provide an emulation of the LaTeX 2.09 author environment so that OLD documents can be successfully processed. It should NOT be used for NEW documents! New documents should use Standard LaTeX conventions and start with the \documentclass command. Compatibility mode is UNLIKELY TO WORK with LaTeX 2.09 style files that change any internal macros, especially not with those that change the FONT SELECTION or OUTPUT ROUTINES. Therefore such style files MUST BE UPDATED to use Current Standard LaTeX: LaTeX2e. If you suspect that you may be using such a style file, which is probably very, very old by now, then you should attempt to get it updated by sending a copy of this error message to the author of that file. ************************************************************* (/usr/share/texmf-texlive/tex/latex/base/tracefnt.sty) (/usr/share/texmf-texlive/tex/latex/base/latexsym.sty)) (/usr/share/texmf-texlive/tex/latex/base/report.cls Document Class: report 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size10.clo)) (./volume_io.aux) (/usr/share/texmf-texlive/tex/latex/base/ulasy.fd) [0] (./volume_io.toc [1]) [2] Chapter 1. [3] Chapter 2. [4] Chapter 3. [5] [6] Chapter 4. [7] [8] [9] [10] Chapter 5. [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6. [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 7. [52] [53] [54] [55] [56] [57] Chapter 8. [58] [59] [60] [61] [62] [63] [64] Chapter 9. [65] [66] [67] (./volume_io.aux) ) Output written on volume_io.dvi (68 pages, 146964 bytes). Transcript written on volume_io.log. dvips volume_io.dvi -o volume_io.ps This is dvips(k) 5.98 Copyright 2009 Radical Eye Software (www.radicaleye.com) ' TeX output 2011.12.29:1056' -> volume_io.ps . [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] make[1]: Leaving directory `/build/buildd/minc-2.1.00/volume_io/Documentation' /usr/bin/fakeroot debian/rules binary-arch /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead dh_testroot dh_clean -k dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./ac_config_aux/config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./ac_config_aux/config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . install DESTDIR=/build/buildd/minc-2.1.00/debian/tmp/ make[1]: Entering directory `/build/buildd/minc-2.1.00' Making install in . make[2]: Entering directory `/build/buildd/minc-2.1.00' make[3]: Entering directory `/build/buildd/minc-2.1.00' test -z "/usr/lib" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/lib" /bin/bash ./libtool --mode=install /usr/bin/install -c libminc2.la libvolume_io2.la libacr_nema.la '/build/buildd/minc-2.1.00/debian/tmp//usr/lib' libtool: install: /usr/bin/install -c .libs/libminc2.so.1.1.3 /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libminc2.so.1.1.3 libtool: install: (cd /build/buildd/minc-2.1.00/debian/tmp//usr/lib && { ln -s -f libminc2.so.1.1.3 libminc2.so.1 || { rm -f libminc2.so.1 && ln -s libminc2.so.1.1.3 libminc2.so.1; }; }) libtool: install: (cd /build/buildd/minc-2.1.00/debian/tmp//usr/lib && { ln -s -f libminc2.so.1.1.3 libminc2.so || { rm -f libminc2.so && ln -s libminc2.so.1.1.3 libminc2.so; }; }) libtool: install: /usr/bin/install -c .libs/libminc2.lai /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libminc2.la libtool: install: /usr/bin/install -c .libs/libvolume_io2.so.1.1.2 /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libvolume_io2.so.1.1.2 libtool: install: (cd /build/buildd/minc-2.1.00/debian/tmp//usr/lib && { ln -s -f libvolume_io2.so.1.1.2 libvolume_io2.so.1 || { rm -f libvolume_io2.so.1 && ln -s libvolume_io2.so.1.1.2 libvolume_io2.so.1; }; }) libtool: install: (cd /build/buildd/minc-2.1.00/debian/tmp//usr/lib && { ln -s -f libvolume_io2.so.1.1.2 libvolume_io2.so || { rm -f libvolume_io2.so && ln -s libvolume_io2.so.1.1.2 libvolume_io2.so; }; }) libtool: install: /usr/bin/install -c .libs/libvolume_io2.lai /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libvolume_io2.la libtool: install: /usr/bin/install -c .libs/libacr_nema.so.0.0.0 /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libacr_nema.so.0.0.0 libtool: install: (cd /build/buildd/minc-2.1.00/debian/tmp//usr/lib && { ln -s -f libacr_nema.so.0.0.0 libacr_nema.so.0 || { rm -f libacr_nema.so.0 && ln -s libacr_nema.so.0.0.0 libacr_nema.so.0; }; }) libtool: install: (cd /build/buildd/minc-2.1.00/debian/tmp//usr/lib && { ln -s -f libacr_nema.so.0.0.0 libacr_nema.so || { rm -f libacr_nema.so && ln -s libacr_nema.so.0.0.0 libacr_nema.so; }; }) libtool: install: /usr/bin/install -c .libs/libacr_nema.lai /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libacr_nema.la libtool: install: /usr/bin/install -c .libs/libminc2.a /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libminc2.a libtool: install: chmod 644 /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libminc2.a libtool: install: ranlib /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libminc2.a libtool: install: /usr/bin/install -c .libs/libvolume_io2.a /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libvolume_io2.a libtool: install: chmod 644 /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libvolume_io2.a libtool: install: ranlib /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libvolume_io2.a libtool: install: /usr/bin/install -c .libs/libacr_nema.a /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libacr_nema.a libtool: install: chmod 644 /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libacr_nema.a libtool: install: ranlib /build/buildd/minc-2.1.00/debian/tmp//usr/lib/libacr_nema.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/bin" /bin/bash ./libtool --mode=install /usr/bin/install -c voxeltoworld worldtovoxel minc_modify_header mincaverage minccalc minccmp mincconcat minccopy mincexpand mincextract mincgen mincinfo minclookup mincmakescalar mincmakevector mincmath mincresample mincreshape mincstats minctoraw invert_raw_image mincwindow rawtominc transformtags xfm2def xfmconcat xfminvert mincconvert mincdump ecattominc minctoecat mnc2nii nii2mnc upet2mnc dcm2mnc vff2mnc acr_test dump_acr_nema extract_acr_nema read_acr_nema dicom_test copy_acr_nema byte_swap extract '/build/buildd/minc-2.1.00/debian/tmp//usr/bin' libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/voxeltoworld /build/buildd/minc-2.1.00/debian/tmp//usr/bin/voxeltoworld libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/worldtovoxel /build/buildd/minc-2.1.00/debian/tmp//usr/bin/worldtovoxel libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/minc_modify_header /build/buildd/minc-2.1.00/debian/tmp//usr/bin/minc_modify_header libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincaverage /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincaverage libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/minccalc /build/buildd/minc-2.1.00/debian/tmp//usr/bin/minccalc libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/minccmp /build/buildd/minc-2.1.00/debian/tmp//usr/bin/minccmp libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincconcat /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincconcat libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/minccopy /build/buildd/minc-2.1.00/debian/tmp//usr/bin/minccopy libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincexpand /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincexpand libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincextract /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincextract libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincgen /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincgen libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincinfo /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincinfo libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/minclookup /build/buildd/minc-2.1.00/debian/tmp//usr/bin/minclookup libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincmakescalar /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincmakescalar libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincmakevector /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincmakevector libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincmath /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincmath libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincresample /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincresample libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincreshape /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincreshape libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincstats /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincstats libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/minctoraw /build/buildd/minc-2.1.00/debian/tmp//usr/bin/minctoraw libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/invert_raw_image /build/buildd/minc-2.1.00/debian/tmp//usr/bin/invert_raw_image libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincwindow /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincwindow libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/rawtominc /build/buildd/minc-2.1.00/debian/tmp//usr/bin/rawtominc libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/transformtags /build/buildd/minc-2.1.00/debian/tmp//usr/bin/transformtags libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/xfm2def /build/buildd/minc-2.1.00/debian/tmp//usr/bin/xfm2def libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/xfmconcat /build/buildd/minc-2.1.00/debian/tmp//usr/bin/xfmconcat libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/xfminvert /build/buildd/minc-2.1.00/debian/tmp//usr/bin/xfminvert libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincconvert /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincconvert libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mincdump /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mincdump libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ecattominc /build/buildd/minc-2.1.00/debian/tmp//usr/bin/ecattominc libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/minctoecat /build/buildd/minc-2.1.00/debian/tmp//usr/bin/minctoecat libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/mnc2nii /build/buildd/minc-2.1.00/debian/tmp//usr/bin/mnc2nii libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/nii2mnc /build/buildd/minc-2.1.00/debian/tmp//usr/bin/nii2mnc libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/upet2mnc /build/buildd/minc-2.1.00/debian/tmp//usr/bin/upet2mnc libtool: install: warning: `libacr_nema.la' has not been installed in `/usr/lib' libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/dcm2mnc /build/buildd/minc-2.1.00/debian/tmp//usr/bin/dcm2mnc libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/vff2mnc /build/buildd/minc-2.1.00/debian/tmp//usr/bin/vff2mnc libtool: install: warning: `libacr_nema.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/acr_test /build/buildd/minc-2.1.00/debian/tmp//usr/bin/acr_test libtool: install: warning: `libacr_nema.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/dump_acr_nema /build/buildd/minc-2.1.00/debian/tmp//usr/bin/dump_acr_nema libtool: install: warning: `libacr_nema.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/extract_acr_nema /build/buildd/minc-2.1.00/debian/tmp//usr/bin/extract_acr_nema libtool: install: warning: `libacr_nema.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/read_acr_nema /build/buildd/minc-2.1.00/debian/tmp//usr/bin/read_acr_nema libtool: install: warning: `libacr_nema.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/dicom_test /build/buildd/minc-2.1.00/debian/tmp//usr/bin/dicom_test libtool: install: warning: `libacr_nema.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/copy_acr_nema /build/buildd/minc-2.1.00/debian/tmp//usr/bin/copy_acr_nema libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/byte_swap /build/buildd/minc-2.1.00/debian/tmp//usr/bin/byte_swap libtool: install: warning: `libvolume_io2.la' has not been installed in `/usr/lib' libtool: install: warning: `libminc2.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/extract /build/buildd/minc-2.1.00/debian/tmp//usr/bin/extract test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/bin" /usr/bin/install -c progs/minccomplete/minccomplete progs/minchistory/minchistory progs/xfm/xfmflip '/build/buildd/minc-2.1.00/debian/tmp//usr/bin' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/bin" /usr/bin/install -c progs/mincdiff/mincdiff progs/mincedit/mincedit progs/mincheader/mincheader progs/mincpik/mincpik progs/mincview/mincview '/build/buildd/minc-2.1.00/debian/tmp//usr/bin' test -z "/usr/include" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/include" /usr/bin/install -c -m 644 libsrc/minc.h libsrc/ParseArgv.h libsrc/voxel_loop.h libsrc/nd_loop.h libsrc/time_stamp.h libsrc/minc_compat.h volume_io/Include/volume_io.h libsrc2/minc2.h libsrc/minc_simple.h conversion/Acr_nema/acr_nema.h '/build/buildd/minc-2.1.00/debian/tmp//usr/include' test -z "/usr/include/acr_nema" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/include/acr_nema" /usr/bin/install -c -m 644 conversion/Acr_nema/acr_nema/acr_io.h conversion/Acr_nema/acr_nema/dicom_client_routines.h conversion/Acr_nema/acr_nema/dicom_network.h conversion/Acr_nema/acr_nema/element.h conversion/Acr_nema/acr_nema/file_io.h conversion/Acr_nema/acr_nema/group.h conversion/Acr_nema/acr_nema/message.h conversion/Acr_nema/acr_nema/value_repr.h '/build/buildd/minc-2.1.00/debian/tmp//usr/include/acr_nema' test -z "/usr/include/volume_io" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/include/volume_io" /usr/bin/install -c -m 644 volume_io/Include/volume_io/alloc.h volume_io/Include/volume_io/arrays.h volume_io/Include/volume_io/basic.h volume_io/Include/volume_io/def_math.h volume_io/Include/volume_io/files.h volume_io/Include/volume_io/geom_structs.h volume_io/Include/volume_io/geometry.h volume_io/Include/internal_volume_io.h volume_io/Include/volume_io/multidim.h volume_io/Include/volume_io/progress.h volume_io/Include/volume_io/string_funcs.h volume_io/Include/volume_io/system_dependent.h volume_io/Include/volume_io/transforms.h volume_io/Include/volume_io/vol_io_prototypes.h volume_io/Include/volume_io/volume.h volume_io/Include/volume_io/volume_cache.h '/build/buildd/minc-2.1.00/debian/tmp//usr/include/volume_io' test -z "/usr/share/man/man1" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1" /usr/bin/install -c -m 644 'progs/coordinates/voxeltoworld.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/voxeltoworld.1' /usr/bin/install -c -m 644 'progs/minc_modify_header/minc_modify_header.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minc_modify_header.1' /usr/bin/install -c -m 644 'progs/mincaverage/mincaverage.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincaverage.1' /usr/bin/install -c -m 644 'progs/minccalc/minccalc.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minccalc.1' /usr/bin/install -c -m 644 'progs/minccomplete/minccomplete.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minccomplete.1' /usr/bin/install -c -m 644 'progs/mincconcat/mincconcat.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincconcat.1' /usr/bin/install -c -m 644 'progs/minccmp/minccmp.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minccmp.1' /usr/bin/install -c -m 644 'progs/minccopy/minccopy.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minccopy.1' /usr/bin/install -c -m 644 'progs/mincdiff/mincdiff.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincdiff.1' /usr/bin/install -c -m 644 'progs/mincedit/mincedit.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincedit.1' /usr/bin/install -c -m 644 'progs/mincexpand/mincexpand.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincexpand.1' /usr/bin/install -c -m 644 'progs/mincextract/mincextract.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincextract.1' /usr/bin/install -c -m 644 'progs/mincgen/mincgen.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincgen.1' /usr/bin/install -c -m 644 'progs/mincheader/mincheader.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincheader.1' /usr/bin/install -c -m 644 'progs/minchistory/minchistory.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minchistory.1' /usr/bin/install -c -m 644 'progs/mincinfo/mincinfo.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincinfo.1' /usr/bin/install -c -m 644 'progs/minclookup/minclookup.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minclookup.1' /usr/bin/install -c -m 644 'progs/mincmakescalar/mincmakescalar.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincmakescalar.1' /usr/bin/install -c -m 644 'progs/mincmakevector/mincmakevector.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincmakevector.1' /usr/bin/install -c -m 644 'progs/mincmath/mincmath.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincmath.1' /usr/bin/install -c -m 644 'progs/mincpik/mincpik.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincpik.1' /usr/bin/install -c -m 644 'progs/mincresample/mincresample.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincresample.1' /usr/bin/install -c -m 644 'progs/mincreshape/mincreshape.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincreshape.1' /usr/bin/install -c -m 644 'progs/mincstats/mincstats.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincstats.1' /usr/bin/install -c -m 644 'progs/minctoraw/minctoraw.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minctoraw.1' /usr/bin/install -c -m 644 'progs/mincview/invert_raw_image.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/invert_raw_image.1' /usr/bin/install -c -m 644 'progs/mincview/mincview.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincview.1' /usr/bin/install -c -m 644 'progs/mincwindow/mincwindow.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincwindow.1' /usr/bin/install -c -m 644 'progs/rawtominc/rawtominc.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/rawtominc.1' /usr/bin/install -c -m 644 'progs/xfm/transformtags.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/transformtags.1' /usr/bin/install -c -m 644 'progs/xfm/xfm2def.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/xfm2def.1' /usr/bin/install -c -m 644 'progs/xfm/xfmconcat.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/xfmconcat.1' /usr/bin/install -c -m 644 'progs/xfm/xfminvert.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/xfminvert.1' /usr/bin/install -c -m 644 'progs/xfm/xfmflip.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/xfmflip.1' /usr/bin/install -c -m 644 'progs/mincconvert/mincconvert.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mincconvert.1' /usr/bin/install -c -m 644 'conversion/ecattominc/ecattominc.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/ecattominc.1' /usr/bin/install -c -m 644 'conversion/minctoecat/minctoecat.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/minctoecat.1' /usr/bin/install -c -m 644 'conversion/nifti1/nii2mnc.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/nii2mnc.1' /usr/bin/install -c -m 644 'conversion/nifti1/mnc2nii.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/mnc2nii.1' /usr/bin/install -c -m 644 'conversion/micropet/upet2mnc.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/upet2mnc.1' /usr/bin/install -c -m 644 'conversion/dcm2mnc/dcm2mnc.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/dcm2mnc.1' /usr/bin/install -c -m 644 'conversion/vff2mnc/vff2mnc.man1' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man1/vff2mnc.1' test -z "/usr/share/man/man3" || /bin/mkdir -p "/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man3" /usr/bin/install -c -m 644 'libsrc/ParseArgv.man3' '/build/buildd/minc-2.1.00/debian/tmp//usr/share/man/man3/ParseArgv.3' make[3]: Leaving directory `/build/buildd/minc-2.1.00' make[2]: Leaving directory `/build/buildd/minc-2.1.00' Making install in volume_io make[2]: Entering directory `/build/buildd/minc-2.1.00/volume_io' Making install in Documentation make[3]: Entering directory `/build/buildd/minc-2.1.00/volume_io/Documentation' make[4]: Entering directory `/build/buildd/minc-2.1.00/volume_io/Documentation' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/minc-2.1.00/volume_io/Documentation' make[3]: Leaving directory `/build/buildd/minc-2.1.00/volume_io/Documentation' Making install in Testing make[3]: Entering directory `/build/buildd/minc-2.1.00/volume_io/Testing' make[4]: Entering directory `/build/buildd/minc-2.1.00/volume_io/Testing' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/minc-2.1.00/volume_io/Testing' make[3]: Leaving directory `/build/buildd/minc-2.1.00/volume_io/Testing' make[3]: Entering directory `/build/buildd/minc-2.1.00/volume_io' make[4]: Entering directory `/build/buildd/minc-2.1.00/volume_io' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/minc-2.1.00/volume_io' make[3]: Leaving directory `/build/buildd/minc-2.1.00/volume_io' make[2]: Leaving directory `/build/buildd/minc-2.1.00/volume_io' Making install in testdir make[2]: Entering directory `/build/buildd/minc-2.1.00/testdir' cd . && chmod +x run_test_arg_parse.sh run_tests.sh run_test2.sh xfmconcat_01.sh xfmconcat_02.sh run_test_progs.sh make[3]: Entering directory `/build/buildd/minc-2.1.00/testdir' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/minc-2.1.00/testdir' make[2]: Leaving directory `/build/buildd/minc-2.1.00/testdir' Making install in doc make[2]: Entering directory `/build/buildd/minc-2.1.00/doc' make[3]: Entering directory `/build/buildd/minc-2.1.00/doc' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/minc-2.1.00/doc' make[2]: Leaving directory `/build/buildd/minc-2.1.00/doc' Making install in libsrc2/test make[2]: Entering directory `/build/buildd/minc-2.1.00/libsrc2/test' cd . && chmod +x testminctools.sh make[3]: Entering directory `/build/buildd/minc-2.1.00/libsrc2/test' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/minc-2.1.00/libsrc2/test' make[2]: Leaving directory `/build/buildd/minc-2.1.00/libsrc2/test' make[1]: Leaving directory `/build/buildd/minc-2.1.00' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/minc-tools.substvars dh_installdirs -pminc-tools rm -f debian/tmp/usr/bin/mincexample? rm -f debian/tmp/usr/bin/byte_swap rm -f debian/tmp/usr/bin/extract rm -f debian/tmp/usr/bin/acr_test rm -f debian/tmp/usr/bin/dicom_test dh_install -pminc-tools --autodest debian/tmp/usr/bin dh_install -pminc-tools --autodest debian/tmp/usr/share/man dh_link -pminc-tools \ /usr/share/man/man1/voxeltoworld.1 \ /usr/share/man/man1/worldtovoxel.1 Adding cdbs dependencies to debian/libminc2-1.substvars dh_installdirs -plibminc2-1 dh_install -plibminc2-1 --autodest debian/tmp/usr/lib/lib*.so.* Adding cdbs dependencies to debian/libminc-dev.substvars dh_installdirs -plibminc-dev dh_install -plibminc-dev --autodest debian/tmp/usr/lib/lib*.so dh_install -plibminc-dev --autodest debian/tmp/usr/lib/lib*.a dh_install -plibminc-dev --autodest debian/tmp/usr/include dh_installdocs -plibminc-dev doc/prog_ref.ps doc/prog_guide.ps volume_io/Documentation/volume_io.ps debian/index.html dh_installdocs -pminc-tools ./README ./NEWS ./AUTHORS dh_installexamples -pminc-tools dh_installman -pminc-tools dh_installinfo -pminc-tools dh_installmenu -pminc-tools dh_installcron -pminc-tools dh_installinit -pminc-tools dh_installdebconf -pminc-tools dh_installemacsen -pminc-tools dh_installcatalogs -pminc-tools dh_installpam -pminc-tools dh_installlogrotate -pminc-tools dh_installlogcheck -pminc-tools dh_installchangelogs -pminc-tools ./ChangeLog dh_installudev -pminc-tools dh_lintian -pminc-tools dh_bugfiles -pminc-tools dh_install -pminc-tools dh_link -pminc-tools dh_installmime -pminc-tools dh_installgsettings -pminc-tools dh_installdocs -plibminc2-1 ./README ./NEWS ./AUTHORS dh_installexamples -plibminc2-1 dh_installman -plibminc2-1 dh_installinfo -plibminc2-1 dh_installmenu -plibminc2-1 dh_installcron -plibminc2-1 dh_installinit -plibminc2-1 dh_installdebconf -plibminc2-1 dh_installemacsen -plibminc2-1 dh_installcatalogs -plibminc2-1 dh_installpam -plibminc2-1 dh_installlogrotate -plibminc2-1 dh_installlogcheck -plibminc2-1 dh_installchangelogs -plibminc2-1 ./ChangeLog dh_installudev -plibminc2-1 dh_lintian -plibminc2-1 dh_bugfiles -plibminc2-1 dh_install -plibminc2-1 dh_link -plibminc2-1 dh_installmime -plibminc2-1 dh_installgsettings -plibminc2-1 dh_installdocs -plibminc-dev ./README ./NEWS ./AUTHORS dh_installexamples -plibminc-dev dh_installman -plibminc-dev dh_installinfo -plibminc-dev dh_installmenu -plibminc-dev dh_installcron -plibminc-dev dh_installinit -plibminc-dev dh_installdebconf -plibminc-dev dh_installemacsen -plibminc-dev dh_installcatalogs -plibminc-dev dh_installpam -plibminc-dev dh_installlogrotate -plibminc-dev dh_installlogcheck -plibminc-dev dh_installchangelogs -plibminc-dev ./ChangeLog dh_installudev -plibminc-dev dh_lintian -plibminc-dev dh_bugfiles -plibminc-dev dh_install -plibminc-dev dh_link -plibminc-dev dh_installmime -plibminc-dev dh_installgsettings -plibminc-dev dh_strip -pminc-tools dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: minc-tools libminc2-1 libminc-dev dh_strip debug symbol extraction: packages to act on: minc-tools dh_strip debug symbol extraction: ignored packages: minc-tools is already stripped, ignoring dh_compress -pminc-tools dh_fixperms -pminc-tools dh_makeshlibs -pminc-tools dh_strip -plibminc2-1 dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: minc-tools libminc2-1 libminc-dev dh_strip debug symbol extraction: packages to act on: libminc2-1 dh_strip debug symbol extraction: ignored packages: libminc2-1 is already stripped, ignoring dh_compress -plibminc2-1 dh_fixperms -plibminc2-1 dh_makeshlibs -plibminc2-1 dh_strip -plibminc-dev dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: minc-tools libminc2-1 libminc-dev dh_strip debug symbol extraction: packages to act on: libminc-dev dh_strip debug symbol extraction: ignored packages: libminc-dev is already stripped, ignoring dh_compress -plibminc-dev dh_fixperms -plibminc-dev dh_makeshlibs -plibminc-dev dh_installdeb -pminc-tools dh_perl -pminc-tools dh_shlibdeps -pminc-tools dh_installdeb -plibminc2-1 dh_perl -plibminc2-1 dh_shlibdeps -plibminc2-1 dpkg-shlibdeps: warning: symbol miicv_setdbl used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol miattputstr used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol miicv_detach used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol micopy_all_var_defs used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol miget_valid_range used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol miicv_put used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol miopen used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol MI2attput used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol MI2diminq used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: symbol miicv_create used by debian/libminc2-1/usr/lib/libvolume_io2.so.1.1.2 found in none of the libraries. dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all). dh_installdeb -plibminc-dev dh_perl -plibminc-dev dh_shlibdeps -plibminc-dev dh_gencontrol -pminc-tools dpkg-gencontrol: warning: package minc-tools: unused substitution variable ${perl:Depends} # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pminc-tools ; fi dh_md5sums -pminc-tools dh_builddeb -pminc-tools INFO: pkgstriptranslations version 110 pkgstriptranslations: processing minc-tools (in debian/minc-tools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/minc-tools/DEBIAN/control, package minc-tools, directory debian/minc-tools .. removing usr/share/doc/minc-tools/changelog.gz grep: ../libminc2-1/DEBIAN/control: No such file or directory Searching for duplicated docs in dependency libminc2-1... symlinking README.gz in minc-tools to file in libminc2-1 symlinking NEWS.gz in minc-tools to file in libminc2-1 symlinking AUTHORS in minc-tools to file in libminc2-1 symlinking changelog.Debian.gz in minc-tools to file in libminc2-1 pkgstripfiles: PNG optimization for package minc-tools took 0 s dpkg-deb: warning: 'debian/minc-tools/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `minc-tools' in `../minc-tools_2.1.00-2_armel.deb'. dh_gencontrol -plibminc2-1 # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -plibminc2-1 ; fi dh_md5sums -plibminc2-1 dh_builddeb -plibminc2-1 INFO: pkgstriptranslations version 110 pkgstriptranslations: processing libminc2-1 (in debian/libminc2-1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libminc2-1/DEBIAN/control, package libminc2-1, directory debian/libminc2-1 .. removing usr/share/doc/libminc2-1/changelog.gz pkgstripfiles: Truncating usr/share/doc/libminc2-1/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package libminc2-1 took 0 s dpkg-deb: warning: 'debian/libminc2-1/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libminc2-1' in `../libminc2-1_2.1.00-2_armel.deb'. dh_gencontrol -plibminc-dev # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -plibminc-dev ; fi dh_md5sums -plibminc-dev dh_builddeb -plibminc-dev INFO: pkgstriptranslations version 110 pkgstriptranslations: processing libminc-dev (in debian/libminc-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libminc-dev/DEBIAN/control, package libminc-dev, directory debian/libminc-dev .. removing usr/share/doc/libminc-dev/changelog.gz Searching for duplicated docs in dependency libminc2-1... symlinking README.gz in libminc-dev to file in libminc2-1 symlinking NEWS.gz in libminc-dev to file in libminc2-1 symlinking AUTHORS in libminc-dev to file in libminc2-1 symlinking changelog.Debian.gz in libminc-dev to file in libminc2-1 pkgstripfiles: PNG optimization for package libminc-dev took 0 s dpkg-deb: warning: 'debian/libminc-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libminc-dev' in `../libminc-dev_2.1.00-2_armel.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../minc_2.1.00-2_armel.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build minc-2.1.00 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111229-1058 chroot-autobuild/build/buildd/minc-tools_2.1.00-2_armel.deb: new debian package, version 2.0. size 465532 bytes: control archive= 3370 bytes. 1180 bytes, 23 lines control 5570 bytes, 92 lines md5sums Package: minc-tools Source: minc Version: 2.1.00-2 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1230 Depends: libc6 (>= 2.7), libhdf5-openmpi-1.8.4, libminc2-1, libnetcdf6, csh | c-shell, netcdf-bin, libgetopt-tabular-perl, libtext-format-perl, imagemagick Section: science Priority: optional Homepage: http://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Description: MNI medical image format tools This package contains tools to manipulate MINC files. . The Minc file format is a highly flexible medical image file format built on top of the NetCDF generalized data format. The format is simple, self-describing, extensible, portable and N-dimensional, with programming interfaces for both low-level data access and high-level volume manipulation. On top of the libraries is a suite of generic image-file manipulation tools. The format, libraries and tools are designed for use in a medical-imaging research environment: they are simple and powerful and make no attempt to provide a pretty interface to users. chroot-autobuild/build/buildd/libminc2-1_2.1.00-2_armel.deb: new debian package, version 2.0. size 218928 bytes: control archive= 1330 bytes. 1240 bytes, 25 lines control 539 bytes, 8 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 74 bytes, 3 lines shlibs Package: libminc2-1 Source: minc Version: 2.1.00-2 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 562 Depends: libc6 (>= 2.7), libgcc1 (>= 1:4.4.0), libhdf5-openmpi-1.8.4, libnetcdf6 Section: libs Priority: optional Homepage: http://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Description: MNI medical image format library This package contains the libraries libminc2 and libvolume_io2. . The Minc file format is a highly flexible medical image file format. Minc version 1 is built on top of the NetCDF generalized data format. Minc version 2 is built on top of the HDF data format. This library handles both formats. In each case the format is simple, self-describing, extensible, portable and N-dimensional, with programming interfaces for both low-level data access and high-level volume manipulation. On top of the libraries is a suite of generic image-file manipulation tools. The format, libraries and tools are designed for use in a medical-imaging research environment : they are simple and powerful and make no attempt to provide a pretty interface to users. chroot-autobuild/build/buildd/libminc-dev_2.1.00-2_armel.deb: new debian package, version 2.0. size 834028 bytes: control archive= 2170 bytes. 1308 bytes, 28 lines control 2808 bytes, 43 lines md5sums Package: libminc-dev Source: minc Version: 2.1.00-2 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1595 Depends: libminc2-1 (= 2.1.00-2), libnetcdf-dev, libhdf5-lam-dev Conflicts: libminc0-dev Replaces: libminc0-dev Section: libdevel Priority: optional Homepage: http://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Description: MNI medical image format development environment This package contains the library and headers for libminc2 and libvolume_io2. . The Minc file format is a highly flexible medical image file format. Minc version 1 is built on top of the NetCDF generalized data format. Minc version 2 is built on top of the HDF data format. This library handles both formats. In each case the format is simple, self-describing, extensible, portable and N-dimensional, with programming interfaces for both low-level data access and high-level volume manipulation. On top of the libraries is a suite of generic image-file manipulation tools. The format, libraries and tools are designed for use in a medical-imaging research environment : they are simple and powerful and make no attempt to provide a pretty interface to users. chroot-autobuild/build/buildd/minc-tools_2.1.00-2_armel.deb: tar: Record size = 16 blocks drwxr-xr-x root/root 0 2011-12-29 10:56 ./ drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/ drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/share/ drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-29 10:58 ./usr/share/doc/minc-tools/ -rw-r--r-- root/root 848 2011-12-29 10:47 ./usr/share/doc/minc-tools/copyright drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/share/man/ drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/share/man/man3/ -rw-r--r-- root/root 5934 2011-12-29 10:56 ./usr/share/man/man3/ParseArgv.3.gz drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/share/man/man1/ -rw-r--r-- root/root 1935 2011-12-29 10:56 ./usr/share/man/man1/mincmakescalar.1.gz -rw-r--r-- root/root 2223 2011-12-29 10:56 ./usr/share/man/man1/mincconcat.1.gz -rw-r--r-- root/root 364 2011-12-29 10:56 ./usr/share/man/man1/invert_raw_image.1.gz -rw-r--r-- root/root 4745 2011-12-29 10:56 ./usr/share/man/man1/minccalc.1.gz -rw-r--r-- root/root 3675 2011-12-29 10:56 ./usr/share/man/man1/dcm2mnc.1.gz -rw-r--r-- root/root 678 2011-12-29 10:56 ./usr/share/man/man1/vff2mnc.1.gz -rw-r--r-- root/root 408 2011-12-29 10:56 ./usr/share/man/man1/xfminvert.1.gz -rw-r--r-- root/root 590 2011-12-29 10:56 ./usr/share/man/man1/mincdiff.1.gz -rw-r--r-- root/root 4570 2011-12-29 10:56 ./usr/share/man/man1/rawtominc.1.gz -rw-r--r-- root/root 957 2011-12-29 10:56 ./usr/share/man/man1/mincexpand.1.gz -rw-r--r-- root/root 1045 2011-12-29 10:56 ./usr/share/man/man1/ecattominc.1.gz -rw-r--r-- root/root 618 2011-12-29 10:56 ./usr/share/man/man1/minctoraw.1.gz -rw-r--r-- root/root 3023 2011-12-29 10:56 ./usr/share/man/man1/mincmath.1.gz -rw-r--r-- root/root 716 2011-12-29 10:56 ./usr/share/man/man1/mincheader.1.gz -rw-r--r-- root/root 1416 2011-12-29 10:56 ./usr/share/man/man1/minctoecat.1.gz -rw-r--r-- root/root 1033 2011-12-29 10:56 ./usr/share/man/man1/mincextract.1.gz -rw-r--r-- root/root 568 2011-12-29 10:56 ./usr/share/man/man1/xfmflip.1.gz -rw-r--r-- root/root 638 2011-12-29 10:56 ./usr/share/man/man1/minccopy.1.gz -rw-r--r-- root/root 602 2011-12-29 10:56 ./usr/share/man/man1/mincwindow.1.gz -rw-r--r-- root/root 3214 2011-12-29 10:56 ./usr/share/man/man1/minclookup.1.gz -rw-r--r-- root/root 1205 2011-12-29 10:56 ./usr/share/man/man1/mincpik.1.gz -rw-r--r-- root/root 572 2011-12-29 10:56 ./usr/share/man/man1/transformtags.1.gz -rw-r--r-- root/root 469 2011-12-29 10:56 ./usr/share/man/man1/xfmconcat.1.gz -rw-r--r-- root/root 2466 2011-12-29 10:56 ./usr/share/man/man1/minchistory.1.gz -rw-r--r-- root/root 1631 2011-12-29 10:56 ./usr/share/man/man1/minc_modify_header.1.gz -rw-r--r-- root/root 818 2011-12-29 10:56 ./usr/share/man/man1/upet2mnc.1.gz -rw-r--r-- root/root 4646 2011-12-29 10:56 ./usr/share/man/man1/mincreshape.1.gz -rw-r--r-- root/root 1272 2011-12-29 10:56 ./usr/share/man/man1/nii2mnc.1.gz -rw-r--r-- root/root 372 2011-12-29 10:56 ./usr/share/man/man1/mincview.1.gz -rw-r--r-- root/root 2215 2011-12-29 10:56 ./usr/share/man/man1/mincaverage.1.gz -rw-r--r-- root/root 974 2011-12-29 10:56 ./usr/share/man/man1/mincconvert.1.gz -rw-r--r-- root/root 488 2011-12-29 10:56 ./usr/share/man/man1/mincedit.1.gz -rw-r--r-- root/root 4501 2011-12-29 10:56 ./usr/share/man/man1/mincresample.1.gz -rw-r--r-- root/root 2563 2011-12-29 10:56 ./usr/share/man/man1/minccomplete.1.gz -rw-r--r-- root/root 1429 2011-12-29 10:56 ./usr/share/man/man1/mincmakevector.1.gz -rw-r--r-- root/root 1253 2011-12-29 10:56 ./usr/share/man/man1/mnc2nii.1.gz -rw-r--r-- root/root 1672 2011-12-29 10:56 ./usr/share/man/man1/mincinfo.1.gz -rw-r--r-- root/root 880 2011-12-29 10:56 ./usr/share/man/man1/xfm2def.1.gz -rw-r--r-- root/root 3869 2011-12-29 10:56 ./usr/share/man/man1/mincstats.1.gz -rw-r--r-- root/root 1605 2011-12-29 10:56 ./usr/share/man/man1/minccmp.1.gz -rw-r--r-- root/root 498 2011-12-29 10:56 ./usr/share/man/man1/voxeltoworld.1.gz -rw-r--r-- root/root 4704 2011-12-29 10:56 ./usr/share/man/man1/mincgen.1.gz drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/bin/ -rwxr-xr-x root/root 5672 2011-12-29 10:57 ./usr/bin/mincwindow -rwxr-xr-x root/root 5700 2011-12-29 10:57 ./usr/bin/mincconvert -rwxr-xr-x root/root 34584 2011-12-29 10:57 ./usr/bin/ecattominc -rwxr-xr-x root/root 10332 2011-12-29 10:57 ./usr/bin/xfm2def -rwxr-xr-x root/root 52084 2011-12-29 10:57 ./usr/bin/mincreshape -rwxr-xr-x root/root 17061 2011-12-29 10:56 ./usr/bin/mincpik -rwxr-xr-x root/root 75540 2011-12-29 10:57 ./usr/bin/mincgen -rwxr-xr-x root/root 97764 2011-12-29 10:57 ./usr/bin/dcm2mnc -rwxr-xr-x root/root 5644 2011-12-29 10:57 ./usr/bin/xfmconcat -rwxr-xr-x root/root 4551 2011-12-29 10:56 ./usr/bin/minccomplete -rwxr-xr-x root/root 19004 2011-12-29 10:57 ./usr/bin/mincinfo -rwxr-xr-x root/root 9740 2011-12-29 10:57 ./usr/bin/minccopy -rwxr-xr-x root/root 112884 2011-12-29 10:57 ./usr/bin/mnc2nii -rwxr-xr-x root/root 14180 2011-12-29 10:57 ./usr/bin/minccmp -rwxr-xr-x root/root 3112 2011-12-29 10:56 ./usr/bin/mincdiff -rwxr-xr-x root/root 10180 2011-12-29 10:57 ./usr/bin/mincmakescalar -rwxr-xr-x root/root 5636 2011-12-29 10:57 ./usr/bin/transformtags -rwxr-xr-x root/root 9692 2011-12-29 10:57 ./usr/bin/dump_acr_nema -rwxr-xr-x root/root 31492 2011-12-29 10:57 ./usr/bin/mincstats -rwxr-xr-x root/root 51864 2011-12-29 10:57 ./usr/bin/minccalc -rwxr-xr-x root/root 9852 2011-12-29 10:57 ./usr/bin/minc_modify_header -rwxr-xr-x root/root 5572 2011-12-29 10:57 ./usr/bin/worldtovoxel -rwxr-xr-x root/root 19684 2011-12-29 10:57 ./usr/bin/mincmath -rwxr-xr-x root/root 10036 2011-12-29 10:57 ./usr/bin/mincmakevector -rwxr-xr-x root/root 4985 2011-12-29 10:56 ./usr/bin/mincedit -rwxr-xr-x root/root 4020 2011-12-29 10:56 ./usr/bin/minchistory -rwxr-xr-x root/root 9672 2011-12-29 10:57 ./usr/bin/extract_acr_nema -rwxr-xr-x root/root 5636 2011-12-29 10:57 ./usr/bin/xfminvert -rwxr-xr-x root/root 22176 2011-12-29 10:57 ./usr/bin/vff2mnc -rwxr-xr-x root/root 36508 2011-12-29 10:57 ./usr/bin/rawtominc -rwxr-xr-x root/root 26980 2011-12-29 10:57 ./usr/bin/mincconcat -rwxr-xr-x root/root 3866 2011-12-29 10:56 ./usr/bin/mincview -rwxr-xr-x root/root 5612 2011-12-29 10:57 ./usr/bin/mincexpand -rwxr-xr-x root/root 26372 2011-12-29 10:57 ./usr/bin/mincdump -rwxr-xr-x root/root 9676 2011-12-29 10:57 ./usr/bin/copy_acr_nema -rwxr-xr-x root/root 112900 2011-12-29 10:57 ./usr/bin/nii2mnc -rwxr-xr-x root/root 34620 2011-12-29 10:57 ./usr/bin/minctoecat -rwxr-xr-x root/root 3619 2011-12-29 10:56 ./usr/bin/xfmflip -rwxr-xr-x root/root 9964 2011-12-29 10:57 ./usr/bin/minctoraw -rwxr-xr-x root/root 5624 2011-12-29 10:57 ./usr/bin/read_acr_nema -rwxr-xr-x root/root 69076 2011-12-29 10:57 ./usr/bin/mincresample -rwxr-xr-x root/root 22716 2011-12-29 10:57 ./usr/bin/mincextract -rwxr-xr-x root/root 5576 2011-12-29 10:57 ./usr/bin/voxeltoworld -rwxr-xr-x root/root 15444 2011-12-29 10:57 ./usr/bin/minclookup -rwxr-xr-x root/root 18676 2011-12-29 10:57 ./usr/bin/mincaverage -rwxr-xr-x root/root 5552 2011-12-29 10:57 ./usr/bin/invert_raw_image -rwxr-xr-x root/root 24652 2011-12-29 10:57 ./usr/bin/upet2mnc -rwxr-xr-x root/root 3107 2011-12-29 10:56 ./usr/bin/mincheader lrwxrwxrwx root/root 0 2011-12-29 10:58 ./usr/share/doc/minc-tools/README.gz -> ../libminc2-1/README.gz lrwxrwxrwx root/root 0 2011-12-29 10:58 ./usr/share/doc/minc-tools/NEWS.gz -> ../libminc2-1/NEWS.gz lrwxrwxrwx root/root 0 2011-12-29 10:58 ./usr/share/doc/minc-tools/AUTHORS -> ../libminc2-1/AUTHORS lrwxrwxrwx root/root 0 2011-12-29 10:58 ./usr/share/doc/minc-tools/changelog.Debian.gz -> ../libminc2-1/changelog.Debian.gz lrwxrwxrwx root/root 0 2011-12-29 10:57 ./usr/share/man/man1/worldtovoxel.1.gz -> voxeltoworld.1.gz chroot-autobuild/build/buildd/libminc2-1_2.1.00-2_armel.deb: drwxr-xr-x root/root 0 2011-12-29 10:57 ./ drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/ drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/share/ drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-29 10:58 ./usr/share/doc/libminc2-1/ -rw-r--r-- root/root 3442 2010-04-13 06:57 ./usr/share/doc/libminc2-1/README.gz -rw-r--r-- root/root 11331 2010-08-11 04:05 ./usr/share/doc/libminc2-1/NEWS.gz -rw-r--r-- root/root 510 2010-04-13 06:29 ./usr/share/doc/libminc2-1/AUTHORS -rw-r--r-- root/root 1262 2011-12-29 10:58 ./usr/share/doc/libminc2-1/changelog.Debian.gz -rw-r--r-- root/root 848 2011-12-29 10:47 ./usr/share/doc/libminc2-1/copyright drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/lib/ -rw-r--r-- root/root 216108 2011-12-29 10:57 ./usr/lib/libminc2.so.1.1.3 -rw-r--r-- root/root 239828 2011-12-29 10:57 ./usr/lib/libvolume_io2.so.1.1.2 -rw-r--r-- root/root 60044 2011-12-29 10:57 ./usr/lib/libacr_nema.so.0.0.0 lrwxrwxrwx root/root 0 2011-12-29 10:57 ./usr/lib/libminc2.so.1 -> libminc2.so.1.1.3 lrwxrwxrwx root/root 0 2011-12-29 10:57 ./usr/lib/libacr_nema.so.0 -> libacr_nema.so.0.0.0 lrwxrwxrwx root/root 0 2011-12-29 10:57 ./usr/lib/libvolume_io2.so.1 -> libvolume_io2.so.1.1.2 chroot-autobuild/build/buildd/libminc-dev_2.1.00-2_armel.deb: drwxr-xr-x root/root 0 2011-12-29 10:57 ./ drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/ drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/share/ drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-29 10:58 ./usr/share/doc/libminc-dev/ -rw-r--r-- root/root 163863 2011-12-29 10:56 ./usr/share/doc/libminc-dev/prog_guide.ps.gz -rw-r--r-- root/root 1017 2011-12-29 10:47 ./usr/share/doc/libminc-dev/index.html -rw-r--r-- root/root 146133 2011-12-29 10:56 ./usr/share/doc/libminc-dev/prog_ref.ps.gz -rw-r--r-- root/root 848 2011-12-29 10:47 ./usr/share/doc/libminc-dev/copyright -rw-r--r-- root/root 225761 2011-12-29 10:56 ./usr/share/doc/libminc-dev/volume_io.ps.gz drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/share/doc-base/ -rw-r--r-- root/root 652 2011-12-29 10:47 ./usr/share/doc-base/minc drwxr-xr-x root/root 0 2011-12-29 10:57 ./usr/lib/ -rw-r--r-- root/root 344696 2011-12-29 10:57 ./usr/lib/libvolume_io2.a -rw-r--r-- root/root 98158 2011-12-29 10:57 ./usr/lib/libacr_nema.a -rw-r--r-- root/root 309516 2011-12-29 10:57 ./usr/lib/libminc2.a drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/include/ -rw-r--r-- root/root 3194 2011-12-29 10:56 ./usr/include/minc_simple.h -rw-r--r-- root/root 15000 2011-12-29 10:56 ./usr/include/voxel_loop.h -rw-r--r-- root/root 2817 2011-12-29 10:56 ./usr/include/minc_compat.h -rw-r--r-- root/root 24335 2011-12-29 10:56 ./usr/include/minc.h drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/include/acr_nema/ -rw-r--r-- root/root 3755 2011-12-29 10:56 ./usr/include/acr_nema/dicom_client_routines.h -rw-r--r-- root/root 7862 2011-12-29 10:56 ./usr/include/acr_nema/acr_io.h -rw-r--r-- root/root 9498 2011-12-29 10:56 ./usr/include/acr_nema/element.h -rw-r--r-- root/root 5360 2011-12-29 10:56 ./usr/include/acr_nema/file_io.h -rw-r--r-- root/root 2657 2011-12-29 10:56 ./usr/include/acr_nema/value_repr.h -rw-r--r-- root/root 6968 2011-12-29 10:56 ./usr/include/acr_nema/group.h -rw-r--r-- root/root 6078 2011-12-29 10:56 ./usr/include/acr_nema/dicom_network.h -rw-r--r-- root/root 2984 2011-12-29 10:56 ./usr/include/acr_nema/message.h -rw-r--r-- root/root 2692 2011-12-29 10:56 ./usr/include/ParseArgv.h -rw-r--r-- root/root 2942 2011-12-29 10:56 ./usr/include/nd_loop.h -rw-r--r-- root/root 2148 2011-12-29 10:56 ./usr/include/time_stamp.h -rw-r--r-- root/root 23057 2011-12-29 10:56 ./usr/include/minc2.h -rw-r--r-- root/root 2150 2011-12-29 10:56 ./usr/include/volume_io.h drwxr-xr-x root/root 0 2011-12-29 10:56 ./usr/include/volume_io/ -rw-r--r-- root/root 2029 2011-12-29 10:56 ./usr/include/volume_io/progress.h -rw-r--r-- root/root 1789 2011-12-29 10:56 ./usr/include/volume_io/string_funcs.h -rw-r--r-- root/root 1095 2011-12-29 10:56 ./usr/include/volume_io/internal_volume_io.h -rw-r--r-- root/root 6749 2011-12-29 10:56 ./usr/include/volume_io/arrays.h -rw-r--r-- root/root 1318 2011-12-29 10:56 ./usr/include/volume_io/system_dependent.h -rw-r--r-- root/root 3379 2011-12-29 10:56 ./usr/include/volume_io/transforms.h -rw-r--r-- root/root 1728 2011-12-29 10:56 ./usr/include/volume_io/files.h -rw-r--r-- root/root 5945 2011-12-29 10:56 ./usr/include/volume_io/basic.h -rw-r--r-- root/root 11612 2011-12-29 10:56 ./usr/include/volume_io/multidim.h -rw-r--r-- root/root 17759 2011-12-29 10:56 ./usr/include/volume_io/volume.h -rw-r--r-- root/root 9236 2011-12-29 10:56 ./usr/include/volume_io/geom_structs.h -rw-r--r-- root/root 4083 2011-12-29 10:56 ./usr/include/volume_io/volume_cache.h -rw-r--r-- root/root 999 2011-12-29 10:56 ./usr/include/volume_io/def_math.h -rw-r--r-- root/root 8965 2011-12-29 10:56 ./usr/include/volume_io/geometry.h -rw-r--r-- root/root 10970 2011-12-29 10:56 ./usr/include/volume_io/alloc.h -rw-r--r-- root/root 52830 2011-12-29 10:56 ./usr/include/volume_io/vol_io_prototypes.h -rw-r--r-- root/root 3137 2011-12-29 10:56 ./usr/include/acr_nema.h lrwxrwxrwx root/root 0 2011-12-29 10:58 ./usr/share/doc/libminc-dev/README.gz -> ../libminc2-1/README.gz lrwxrwxrwx root/root 0 2011-12-29 10:58 ./usr/share/doc/libminc-dev/NEWS.gz -> ../libminc2-1/NEWS.gz lrwxrwxrwx root/root 0 2011-12-29 10:58 ./usr/share/doc/libminc-dev/AUTHORS -> ../libminc2-1/AUTHORS lrwxrwxrwx root/root 0 2011-12-29 10:58 ./usr/share/doc/libminc-dev/changelog.Debian.gz -> ../libminc2-1/changelog.Debian.gz lrwxrwxrwx root/root 0 2011-12-29 10:57 ./usr/lib/libminc2.so -> libminc2.so.1.1.3 lrwxrwxrwx root/root 0 2011-12-29 10:57 ./usr/lib/libacr_nema.so -> libacr_nema.so.0.0.0 lrwxrwxrwx root/root 0 2011-12-29 10:57 ./usr/lib/libvolume_io2.so -> libvolume_io2.so.1.1.2 minc_2.1.00-2_armel.changes: Format: 1.8 Date: Sun, 18 Dec 2011 20:47:03 -0600 Source: minc Binary: minc-tools libminc2-1 libminc-dev Architecture: armel Version: 2.1.00-2 Distribution: precise Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Steve M. Robbins Description: libminc-dev - MNI medical image format development environment libminc2-1 - MNI medical image format library minc-tools - MNI medical image format tools Closes: 585676 Changes: minc (2.1.00-2) unstable; urgency=low . * patches/decompress-whole-file.diff: New. Always decompress entire file to support compressed MINC2 files. Closes: #585676. Checksums-Sha1: 6a0ca4547a6098601127737028d73d7b5340e0f3 465532 minc-tools_2.1.00-2_armel.deb 72574ec46e0e77b422bfa661b144dd82026b72c0 218928 libminc2-1_2.1.00-2_armel.deb 46b29f400fe5cf9fccb7c00bd7dad2503d829d6c 834028 libminc-dev_2.1.00-2_armel.deb Checksums-Sha256: 8a2bdffda25852a2aefcc01715da3a14c7a5781c08a42f483f45517a053f67ce 465532 minc-tools_2.1.00-2_armel.deb 318316b664897fb5490983321ae2192021dc0f163d929373a0cb1bbad8b4e7e3 218928 libminc2-1_2.1.00-2_armel.deb 758245583c23eb5a8efbbdd2fd8a6eedb3e41a73aeeeb576787178e35daeea26 834028 libminc-dev_2.1.00-2_armel.deb Files: e35da6a5d2c0a4bd8438b539872d1a14 465532 science optional minc-tools_2.1.00-2_armel.deb 4349d50cc42c560ecc3e25d953799e1a 218928 libs optional libminc2-1_2.1.00-2_armel.deb 8c449c85fc17e8615c0662849a97c17b 834028 libdevel optional libminc-dev_2.1.00-2_armel.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/minc-2.1.00 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge libxmu6 groff-base libibverbs-dev libx11-data m4 fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libxaw7 libhtml-parser-perl libibverbs1 libhttp-cookies-perl liburi-perl libxpm4 texlive-common x11-common autotools-dev libhdf5-mpi-dev libdb4.8 csh dh-translations libcroco3 libopenmpi1.3 libgettextpo0 libfreetype6 automake python-scour libnet-ssleay-perl libfile-listing-perl libencode-locale-perl libhttp-negotiate-perl python2.7 libxcb1 tex-common libjpeg-turbo8-dev html2text debhelper libfontconfig1 mpi-default-dev python libmagic1 libgfortran3 libexpat1 bsdmainutils libhdf5-openmpi-dev openmpi-common libxau6 libbsd0 libx11-6 liblwp-mediatypes-perl libhttp-message-perl libtorque2 mime-support intltool libnetcdf-dev libpoppler19 libxt6 libwww-perl libxdmcp6 libjpeg-turbo8 texlive-base libkpathsea5 libhtml-tree-perl texlive-doc-base po-debconf libnet-http-perl libxml-parser-perl libopenmpi-dev libpaper1 libhtml-tagset-perl libxml2 libjpeg8 liblcms1 ed libpaper-utils libhttp-date-perl man-db libice6 intltool-debian libnetcdf6 libio-socket-ssl-perl luatex texlive-latex-base liblwp-protocol-https-perl ucf cdbs libwww-robotrules-perl gettext-base libunistring0 libsm6 libhdf5-openmpi-1.8.4 libxext6 libpipeline1 texlive-binaries autoconf (Reading database ... 21826 files and directories currently installed.) Removing libhdf5-mpi-dev ... Removing csh ... Purging configuration files for csh ... Removing mpi-default-dev ... Removing libhdf5-openmpi-dev ... Removing libbsd0 ... Purging configuration files for libbsd0 ... Removing libnetcdf-dev ... Removing libopenmpi-dev ... Removing libnetcdf6 ... Purging configuration files for libnetcdf6 ... Removing texlive-latex-base ... Purging configuration files for texlive-latex-base ... Removing cdbs ... Removing libhdf5-openmpi-1.8.4 ... Purging configuration files for libhdf5-openmpi-1.8.4 ... Removing libibverbs-dev ... Removing zlib1g-dev ... Removing dh-translations ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing python-scour ... Removing libjpeg-turbo8-dev ... Removing debhelper ... Removing python ... Purging configuration files for python ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing openmpi-common ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing intltool ... Removing texlive-base ... Purging configuration files for texlive-base ... Removing texlive-doc-base ... Purging configuration files for texlive-doc-base ... Removing po-debconf ... Removing libxml-parser-perl ... Removing libpaper-utils ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing luatex ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing texlive-binaries ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing file ... Removing libxaw7 ... Purging configuration files for libxaw7 ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libxpm4 ... Purging configuration files for libxpm4 ... Removing texlive-common ... Removing libgettextpo0 ... Removing automake ... Removing python2.7 ... Purging configuration files for python2.7 ... Removing tex-common ... Purging configuration files for tex-common ... Removing html2text ... Purging configuration files for html2text ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing mime-support ... Purging configuration files for mime-support ... Removing libpoppler19 ... Purging configuration files for libpoppler19 ... Removing libkpathsea5 ... Purging configuration files for libkpathsea5 ... Removing libpaper1 ... Purging configuration files for libpaper1 ... Removing libjpeg8 ... Removing liblcms1 ... Purging configuration files for liblcms1 ... Removing ed ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing autoconf ... Purging configuration files for autoconf ... Removing libxmu6 ... Purging configuration files for libxmu6 ... Removing m4 ... Removing autotools-dev ... Removing libdb4.8 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libjpeg-turbo8 ... Purging configuration files for libjpeg-turbo8 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing libice6 ... Purging configuration files for libice6 ... Removing ucf ... Purging configuration files for ucf ... Removing libx11-data ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing liblwp-protocol-https-perl ... Removing libwww-robotrules-perl ... Removing libhttp-cookies-perl ... Removing libfile-listing-perl ... Removing libhttp-negotiate-perl ... Removing libhttp-message-perl ... Removing libnet-http-perl ... Removing libhttp-date-perl ... Removing libio-socket-ssl-perl ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libnet-ssleay-perl ... Removing libencode-locale-perl ... Removing liblwp-mediatypes-perl ... Removing libhtml-tagset-perl ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111229-1059 Build needed 00:11:58, 26128k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9'] Scanning for processes to kill in build /home/buildd/build-3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9'] Unmounting chroot for build 3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9... none /home/buildd/build-3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9/chroot-autobuild/dev/pts devpts rw,relatime,mode=600,ptmxmode=000 0 0 none /home/buildd/build-3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9'] Removing build 3ac93a7a051f2d4a3e7e42a2c33855ee3b4102d9