Change log for minexpert2 package in Ubuntu

minexpert2 (9.3.2-1) unstable; urgency=low

  * New upstream release.

  * Implemented provisions for Bruker timsTOF data that might have
    been integrated by flatteing IMS scans, thus having no 
    ion mobility data anymore.

  * Implemented multi m/z XIC extractions.

  * Reworked fully the SelectionPolygon code into a new implementation named
    IntegrationScope.

  * Last fixes to the user manual build system.

  * Update dependency to libpappsomspp (version 0.9.24).

 -- Filippo Rusconi <email address hidden>  Thu, 07 Dec 2023 12:16:47 +0100

Available diffs

• diff from 9.3.1-1 to 9.3.2-1 (112.2 KiB)

minexpert2 (9.3.1-1) unstable; urgency=low

  * New upstream version improving the probing of the Bruker timsTOF data
    prior to loading.

  * libpappsomspp-dev (>= 0.9.20)

 -- Filippo Rusconi <email address hidden>  Tue, 05 Dec 2023 11:43:17 +0100

Available diffs

• diff from 9.2.1-1 to 9.3.1-1 (66.1 KiB)
• diff from 9.2.2-1 to 9.3.1-1 (26.0 KiB)

minexpert2 (9.2.2-1) unstable; urgency=low

  * Fix bug: minexpert2: Fails to build source after successful build. Running
    dpkg-buildpackage; dpkg-buildpackage -S works flawlessly (Closes:
    #1046641). Thanks Lucas Nussbaum for reporting the bug.

  * Update dependency over libpappsomspp*.

 -- Filippo Rusconi <email address hidden>  Mon, 20 Nov 2023 18:12:24 +0100

minexpert2 (9.2.1-1) unstable; urgency=medium

  * Upstream release 

    - a serious bug has been fixed (not removing mass spectra from the set to
    be integrated based on the DT range; commit
    df32744d79564f477c7f2358f7681adb5373cb59).

    - improvements to the GUI (added syntax-explanating tooltips to the mass
    spectral data table view filtering line edit widgets)

    - fixed small memory leaks

 -- Filippo Rusconi <email address hidden>  Fri, 30 Jun 2023 10:51:55 +0200

Available diffs

• diff from 9.2.0-1 to 9.2.1-1 (4.8 KiB)

minexpert2 (9.2.0-1) unstable; urgency=low

  * New upstream release with improvements in the way plots are exported 
    as graphics files or as a clipboard object (SVG or RASTER).

  * Update dep lib version libpappsomspp-dev (>= 0.9.12).

  * Removed a bunch of dep pacakges versions.

  * Standards-Version: 4.6.2

  * Remove Conflicts: msxpertsuite-minexpert-data-doc and co.

  * Should fix the build failure (Closes: #1037777).

 -- Filippo Rusconi <email address hidden>  Tue, 20 Jun 2023 16:56:43 +0200

Available diffs

• diff from 8.6.3-1 to 9.2.0-1 (520.7 KiB)

minexpert2 (8.6.3-1) unstable; urgency=low

  * New upstream with a bunch of improvements in the feedback to the user mass
    spectrometry traces-wise (reporting of the mass delta, number of decimals
    increased for super-high-resolution instruments.).

  * Depend on new version of pappsomspp libs.

  * Fix deprecation error with new Qt version (Closes: #1031104). Thanks to
    Santiago Vila <email address hidden> for reporting it.

 -- Filippo Rusconi <email address hidden>  Sun, 12 Feb 2023 11:14:24 +0100

Available diffs

• diff from 8.6.2-2 to 8.6.3-1 (7.7 KiB)

minexpert2 (8.6.2-2) unstable; urgency=low

  * Add Rules-Requires-Root to see if the dh_auto_test does not fail...

 -- Filippo Rusconi <email address hidden>  Thu, 15 Dec 2022 10:57:51 +0100

Available diffs

• diff from 8.6.2-1 to 8.6.2-2 (476 bytes)

minexpert2 (8.6.2-1) unstable; urgency=low

  * New upstream version with new libpappsomspp-dev dependency.

 -- Filippo Rusconi <email address hidden>  Wed, 14 Dec 2022 14:04:36 +0100

Available diffs

• diff from 8.6.1-1 to 8.6.2-1 (1.3 KiB)

minexpert2 (8.6.1-1) unstable; urgency=low

  * Implemented loading of Bruker timsTOF data files with combination of all
    the mobility scans to a single spectrum for each frame.

 -- Filippo Rusconi <email address hidden>  Tue, 13 Dec 2022 18:42:56 +0100

Available diffs

• diff from 8.5.2-1 to 8.6.1-1 (102.3 KiB)
• diff from 8.5.3-1 to 8.6.1-1 (61.9 KiB)

minexpert2 (8.5.3-1) unstable; urgency=low

  * New upstream release trying to fix the issue at 
    https://gitlab.com/msxpertsuite/minexpert2/-/issues/6 pertaining
    to the color map data display in some Agilent files (thanks to Kevin
    Hooijschuur for the report during ASMS 2022).

  * Total overhaul of the user manual to stick more closely to modern DocBook5
    paradigms. Many thanks to the OpenSUSE crew (particularly Tom Schraitle)
    for help in that task.

 -- Filippo Rusconi <email address hidden>  Fri, 28 Oct 2022 14:39:39 +0200

minexpert2 (8.5.2-1) unstable; urgency=low

  * New upstream release fixing "old cruft" bug where an integration from a
    color map (with one m/z dimension) to a color map (having also an m/z
    dimension) would occur as before, with setDecimals(0) and NO_BINNING.

 -- Filippo Rusconi <email address hidden>  Tue, 12 Jul 2022 14:25:26 +0200

Available diffs

• diff from 8.5.1-1 to 8.5.2-1 (7.0 KiB)

minexpert2 (8.5.1-1) unstable; urgency=low

  * Fix regression with the start of mass integrations.

 -- Filippo Rusconi <email address hidden>  Mon, 11 Jul 2022 16:37:12 +0200

Available diffs

• diff from 8.3.0-1 to 8.5.1-1 (14.0 KiB)
• diff from 8.5.0-2 to 8.5.1-1 (2.6 KiB)

minexpert2 (8.5.0-2) unstable; urgency=low

  * Update dependency over libpappsomspp.

 -- Filippo Rusconi <email address hidden>  Mon, 11 Jul 2022 14:15:03 +0200

Available diffs

• diff from 8.5.0-1 to 8.5.0-2 (334 bytes)

minexpert2 (8.5.0-1) unstable; urgency=low

  * New upstream release fixes a bug in the handling of the color map plot pan
    when axes are locked.

  * Updated dependency on libpappsomspp version 0.8.54.

 -- Filippo Rusconi <email address hidden>  Fri, 08 Jul 2022 20:09:24 +0200

Available diffs

• diff from 8.3.0-1 to 8.5.0-1 (14.4 KiB)

minexpert2 (8.3.0-1) unstable; urgency=low

  * Improve significantly the navigation in the plots (thanks to Kevin
    Hooijschuur for useful discussion in front of my poster at the ASMS
    conference). Fixes https://gitlab.com/msxpertsuite/minexpert2/-/issues/5.

  * Fix crash ocurring when showing back a previously plot window (thanks to
    Kevin Hooijschuur for the bug report). Fixes
    https://gitlab.com/msxpertsuite/minexpert2/-/issues/2.

 -- Filippo Rusconi <email address hidden>  Fri, 17 Jun 2022 11:57:08 +0200

Available diffs

• diff from 8.2.0-1 to 8.3.0-1 (7.5 KiB)

minexpert2 (8.2.0-1) unstable; urgency=low

  * New upstream version with a new low intensity threshold removal filter.

  * Updated the user manual.

  * Remove the docbook-mathml, libjeuclid-core-java, libjeuclid-fop-java,
    libjs-mathjax, fonts-mathjax, fonts-mathjax-extras, dependencies and add
    docbook-xml. That should fix the problem related to bug #994795.

  * Standards-Version: 4.6.0

 -- Filippo Rusconi <email address hidden>  Fri, 19 Nov 2021 17:19:11 +0100

Available diffs

• diff from 8.1.1-1 to 8.2.0-1 (51.4 KiB)

minexpert2 (8.1.1-1) unstable; urgency=low

  * New upstream release improving the setting of the low/high filtering
    configuration for color map data.

 -- Filippo Rusconi <email address hidden>  Mon, 26 Apr 2021 13:24:01 +0200

Available diffs

• diff from 7.4.1-1 to 8.1.1-1 (408.2 KiB)

minexpert2 (7.4.1-1) unstable; urgency=low

  * Fix glitch remaining for times where MzIntegrationParams belonged to this
    project (now in libpappsomspp).

  * Fix warning about casting int(0) to enum member.

  * Fix filenames of the STIX2 fonts used for the user manual. The bug was
    reported by Lucas Nussbaum <email address hidden>. Thanks to Juhani Numminen
    <email address hidden> and Dennis Filder <email address hidden> for
    suggesting fixes (Closes: #982713).

  * Standards-Version: 4.5.1. No changes required.

 -- Filippo Rusconi <email address hidden>  Sat, 20 Feb 2021 12:29:25 +0100

Available diffs

• diff from 7.4.0-1 to 7.4.1-1 (12.3 KiB)

minexpert2 (7.4.0-1) unstable; urgency=low

  * New upstream version implementing features as a response to the article's
    reviewers' remarks.

  * Fix to the *.desktop file (localized Categories).

 -- Filippo Rusconi <email address hidden>  Sat, 19 Dec 2020 08:20:02 +0100

Available diffs

• diff from 7.3.0-1 to 7.4.0-1 (141.3 KiB)

minexpert2 (7.3.0-1) unstable; urgency=low

  * Closes: #973232 (I was waiting for libpappsomspp 0.8.8 to be in testing).

  * New feature to rescale the intensities of color maps to log10 so that
    invisible feature appear.

  * Updated the documentation to document the new feature.

 -- Filippo Rusconi <email address hidden>  Fri, 23 Oct 2020 13:37:46 +0200

Available diffs

• diff from 7.2.0-1 to 7.3.0-1 (5.8 KiB)

minexpert2 (7.2.0-1) unstable; urgency=low

  * New feature to remove all the empty composite plot widgets in one go.

  * Improvements in the user experience (intuitive menu item ordering).

  * General overview of the shortcuts to all the commands.

  * Add the CC-4 license to d/copyright, thanks to Thorsten Alteholz
    <email address hidden> for spotting the files concerned.

 -- Filippo Rusconi <email address hidden>  Thu, 15 Oct 2020 09:08:23 +0200