RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep']
Forking launchpad-buildd slave process...
Kernel version: Linux panlong 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64
Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.2.
Syncing the system clock with the buildd NTP service...
27 Apr 05:41:18 ntpdate[25288]: adjust time server 10.211.37.1 offset 0.000098 sec
RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5949173', '/home/buildd/filecache-default/bcd5dc063ce51e1147d70d5a7a54c6f9cc3d3ea4']
Unpacking chroot for build PACKAGEBUILD-5949173
RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5949173']
Mounting chroot for build PACKAGEBUILD-5949173
RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5949173', 'deb http://ftpmaster.internal/ubuntu utopic main universe', 'deb http://ftpmaster.internal/ubuntu utopic-security main universe', 'deb http://ftpmaster.internal/ubuntu utopic-updates main universe', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main universe']
Overriding sources.list in build-PACKAGEBUILD-5949173
RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5949173', 'amd64']
Updating debian chroot for build PACKAGEBUILD-5949173
Ign http://ftpmaster.internal utopic InRelease
Ign http://ftpmaster.internal utopic-security InRelease
Ign http://ftpmaster.internal utopic-updates InRelease
Ign http://ftpmaster.internal utopic-proposed InRelease
Get:1 http://ftpmaster.internal utopic Release.gpg [933 B]
Get:2 http://ftpmaster.internal utopic-security Release.gpg [933 B]
Get:3 http://ftpmaster.internal utopic-updates Release.gpg [933 B]
Get:4 http://ftpmaster.internal utopic-proposed Release.gpg [933 B]
Get:5 http://ftpmaster.internal utopic Release [58.5 kB]
Get:6 http://ftpmaster.internal utopic-security Release [58.5 kB]
Get:7 http://ftpmaster.internal utopic-updates Release [58.5 kB]
Get:8 http://ftpmaster.internal utopic-proposed Release [58.5 kB]
Get:9 http://ftpmaster.internal utopic/main amd64 Packages [1369 kB]
Get:10 http://ftpmaster.internal utopic/universe amd64 Packages [5867 kB]
Get:11 http://ftpmaster.internal utopic/main Translation-en [768 kB]
Get:12 http://ftpmaster.internal utopic/universe Translation-en [4093 kB]
Get:13 http://ftpmaster.internal utopic-security/main amd64 Packages [14 B]
Get:14 http://ftpmaster.internal utopic-security/universe amd64 Packages [14 B]
Get:15 http://ftpmaster.internal utopic-security/main Translation-en [14 B]
Get:16 http://ftpmaster.internal utopic-security/universe Translation-en [14 B]
Get:17 http://ftpmaster.internal utopic-updates/main amd64 Packages [14 B]
Get:18 http://ftpmaster.internal utopic-updates/universe amd64 Packages [14 B]
Get:19 http://ftpmaster.internal utopic-updates/main Translation-en [14 B]
Get:20 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B]
Get:21 http://ftpmaster.internal utopic-proposed/main amd64 Packages [34.3 kB]
Get:22 http://ftpmaster.internal utopic-proposed/universe amd64 Packages [449 kB]
Get:23 http://ftpmaster.internal utopic-proposed/main Translation-en [18.6 kB]
Get:24 http://ftpmaster.internal utopic-proposed/universe Translation-en [317 kB]
Fetched 13.2 MB in 4s (2872 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  librtmp0
Use 'apt-get autoremove' to remove it.
The following NEW packages will be installed:
  libhogweed2 libnettle4 librtmp1
The following packages will be upgraded:
  advancecomp apt apt-transport-https base-files bash binutils cpp-4.8 dpkg
  dpkg-dev findutils g++-4.8 gcc-4.8 gcc-4.8-base gcc-4.9-base iproute2 kmod
  libapt-pkg4.12 libasan0 libatomic1 libcurl3-gnutls libdpkg-perl
  libgcc-4.8-dev libgcc1 libgomp1 libitm1 libjson-c2 libjson0 libkmod2
  libquadmath0 libsasl2-2 libsasl2-modules-db libstdc++-4.8-dev libstdc++6
  libtimedate-perl libtsan0 libudev1 module-init-tools patch tar udev
40 upgraded, 3 newly installed, 0 to remove and 0 not upgraded.
Need to get 27.6 MB of archives.
After this operation, 579 kB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu/ utopic/main base-files amd64 7.2ubuntu6 [63.8 kB]
Get:2 http://ftpmaster.internal/ubuntu/ utopic/main bash amd64 4.3-7ubuntu1 [575 kB]
Get:3 http://ftpmaster.internal/ubuntu/ utopic/main dpkg amd64 1.17.7ubuntu1 [1980 kB]
Get:4 http://ftpmaster.internal/ubuntu/ utopic/main findutils amd64 4.4.2-8 [273 kB]
Get:5 http://ftpmaster.internal/ubuntu/ utopic/main tar amd64 1.27.1-2 [196 kB]
Get:6 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.9-base amd64 4.9.0-1ubuntu3 [16.4 kB]
Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libgcc1 amd64 1:4.9.0-1ubuntu3 [39.5 kB]
Get:8 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++6 amd64 4.9.0-1ubuntu3 [265 kB]
Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libapt-pkg4.12 amd64 1.0.2ubuntu2 [644 kB]
Get:10 http://ftpmaster.internal/ubuntu/ utopic/main apt amd64 1.0.2ubuntu2 [956 kB]
Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libjson-c2 amd64 0.11-4ubuntu1 [22.2 kB]
Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 amd64 16-2ubuntu2 [38.0 kB]
Get:13 http://ftpmaster.internal/ubuntu/ utopic-proposed/main udev amd64 204-8ubuntu1 [734 kB]
Get:14 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libudev1 amd64 204-8ubuntu1 [36.3 kB]
Get:15 http://ftpmaster.internal/ubuntu/ utopic/main kmod amd64 16-2ubuntu2 [84.9 kB]
Get:16 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 16-2ubuntu2 [2086 B]
Get:17 http://ftpmaster.internal/ubuntu/ utopic/main libnettle4 amd64 2.7.1-2 [103 kB]
Get:18 http://ftpmaster.internal/ubuntu/ utopic/main libhogweed2 amd64 2.7.1-2 [124 kB]
Get:19 http://ftpmaster.internal/ubuntu/ utopic-proposed/main librtmp1 amd64 2.4+20131018.git79459a2-2 [53.9 kB]
Get:20 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3-gnutls amd64 7.35.0-1ubuntu3 [165 kB]
Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-2 amd64 2.1.26.dfsg1-9 [48.9 kB]
Get:22 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-modules-db amd64 2.1.26.dfsg1-9 [14.3 kB]
Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libitm1 amd64 4.9.0-1ubuntu3 [29.3 kB]
Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libgomp1 amd64 4.9.0-1ubuntu3 [36.6 kB]
Get:25 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 amd64 4.8.2-21ubuntu1 [4829 kB]
Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev amd64 4.8.2-21ubuntu1 [1037 kB]
Get:27 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 amd64 4.8.2-21ubuntu1 [5003 kB]
Get:28 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 amd64 4.8.2-21ubuntu1 [4443 kB]
Get:29 http://ftpmaster.internal/ubuntu/ utopic/main binutils amd64 2.24.51.20140425-0ubuntu2 [2094 kB]
Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libatomic1 amd64 4.9.0-1ubuntu3 [9112 B]
Get:31 http://ftpmaster.internal/ubuntu/ utopic/main libtsan0 amd64 4.9.0-1ubuntu3 [213 kB]
Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libquadmath0 amd64 4.9.0-1ubuntu3 [129 kB]
Get:33 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev amd64 4.8.2-21ubuntu1 [1688 kB]
Get:34 http://ftpmaster.internal/ubuntu/ utopic/main libasan0 amd64 4.8.2-21ubuntu1 [63.5 kB]
Get:35 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base amd64 4.8.2-21ubuntu1 [15.5 kB]
Get:36 http://ftpmaster.internal/ubuntu/ utopic/main iproute2 amd64 3.14.0-1 [413 kB]
Get:37 http://ftpmaster.internal/ubuntu/ utopic/main libjson0 amd64 0.11-4ubuntu1 [1140 B]
Get:38 http://ftpmaster.internal/ubuntu/ utopic/main apt-transport-https amd64 1.0.2ubuntu2 [25.2 kB]
Get:39 http://ftpmaster.internal/ubuntu/ utopic/main advancecomp amd64 1.19-1 [155 kB]
Get:40 http://ftpmaster.internal/ubuntu/ utopic/main libtimedate-perl all 2.3000-2 [37.5 kB]
Get:41 http://ftpmaster.internal/ubuntu/ utopic/main dpkg-dev all 1.17.7ubuntu1 [726 kB]
Get:42 http://ftpmaster.internal/ubuntu/ utopic/main libdpkg-perl all 1.17.7ubuntu1 [180 kB]
Get:43 http://ftpmaster.internal/ubuntu/ utopic/main patch amd64 2.7.1-5 [84.5 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 27.6 MB in 0s (31.2 MB/s)
(Reading database ... 11788 files and directories currently installed.)
Preparing to unpack .../base-files_7.2ubuntu6_amd64.deb ...
Unpacking base-files (7.2ubuntu6) over (7.2ubuntu5) ...
Setting up base-files (7.2ubuntu6) ...
Installing new version of config file /etc/issue ...
Installing new version of config file /etc/issue.net ...
Installing new version of config file /etc/lsb-release ...
Installing new version of config file /etc/os-release ...
(Reading database ... 11788 files and directories currently installed.)
Preparing to unpack .../bash_4.3-7ubuntu1_amd64.deb ...
Unpacking bash (4.3-7ubuntu1) over (4.3-6ubuntu1) ...
Setting up bash (4.3-7ubuntu1) ...
update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
(Reading database ... 11788 files and directories currently installed.)
Preparing to unpack .../dpkg_1.17.7ubuntu1_amd64.deb ...
Unpacking dpkg (1.17.7ubuntu1) over (1.17.5ubuntu5) ...
Setting up dpkg (1.17.7ubuntu1) ...
Installing new version of config file /etc/cron.daily/dpkg ...
(Reading database ... 11791 files and directories currently installed.)
Preparing to unpack .../findutils_4.4.2-8_amd64.deb ...
Unpacking findutils (4.4.2-8) over (4.4.2-7) ...
Setting up findutils (4.4.2-8) ...
(Reading database ... 11791 files and directories currently installed.)
Preparing to unpack .../tar_1.27.1-2_amd64.deb ...
Unpacking tar (1.27.1-2) over (1.27.1-1) ...
Setting up tar (1.27.1-2) ...
(Reading database ... 11791 files and directories currently installed.)
Preparing to unpack .../gcc-4.9-base_4.9.0-1ubuntu3_amd64.deb ...
Unpacking gcc-4.9-base:amd64 (4.9.0-1ubuntu3) over (4.9-20140406-0ubuntu1) ...
Setting up gcc-4.9-base:amd64 (4.9.0-1ubuntu3) ...
(Reading database ... 11791 files and directories currently installed.)
Preparing to unpack .../libgcc1_1%3a4.9.0-1ubuntu3_amd64.deb ...
Unpacking libgcc1:amd64 (1:4.9.0-1ubuntu3) over (1:4.9-20140406-0ubuntu1) ...
Setting up libgcc1:amd64 (1:4.9.0-1ubuntu3) ...
Processing triggers for libc-bin (2.19-0ubuntu6) ...
(Reading database ... 11791 files and directories currently installed.)
Preparing to unpack .../libstdc++6_4.9.0-1ubuntu3_amd64.deb ...
Unpacking libstdc++6:amd64 (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ...
Setting up libstdc++6:amd64 (4.9.0-1ubuntu3) ...
Processing triggers for libc-bin (2.19-0ubuntu6) ...
(Reading database ... 11791 files and directories currently installed.)
Preparing to unpack .../libapt-pkg4.12_1.0.2ubuntu2_amd64.deb ...
Unpacking libapt-pkg4.12:amd64 (1.0.2ubuntu2) over (1.0.1ubuntu2) ...
Setting up libapt-pkg4.12:amd64 (1.0.2ubuntu2) ...
Processing triggers for libc-bin (2.19-0ubuntu6) ...
(Reading database ... 11791 files and directories currently installed.)
Preparing to unpack .../apt_1.0.2ubuntu2_amd64.deb ...
Unpacking apt (1.0.2ubuntu2) over (1.0.1ubuntu2) ...
Setting up apt (1.0.2ubuntu2) ...
Processing triggers for libc-bin (2.19-0ubuntu6) ...
(Reading database ... 11791 files and directories currently installed.)
Preparing to unpack .../libjson-c2_0.11-4ubuntu1_amd64.deb ...
Unpacking libjson-c2:amd64 (0.11-4ubuntu1) over (0.11-3ubuntu1) ...
Preparing to unpack .../libkmod2_16-2ubuntu2_amd64.deb ...
Unpacking libkmod2:amd64 (16-2ubuntu2) over (15-0ubuntu6) ...
Preparing to unpack .../udev_204-8ubuntu1_amd64.deb ...
Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev'
Unpacking udev (204-8ubuntu1) over (204-5ubuntu20) ...
Preparing to unpack .../libudev1_204-8ubuntu1_amd64.deb ...
Unpacking libudev1:amd64 (204-8ubuntu1) over (204-5ubuntu20) ...
Preparing to unpack .../kmod_16-2ubuntu2_amd64.deb ...
Unpacking kmod (16-2ubuntu2) over (15-0ubuntu6) ...
Preparing to unpack .../module-init-tools_16-2ubuntu2_all.deb ...
Unpacking module-init-tools (16-2ubuntu2) over (15-0ubuntu6) ...
Selecting previously unselected package libnettle4:amd64.
Preparing to unpack .../libnettle4_2.7.1-2_amd64.deb ...
Unpacking libnettle4:amd64 (2.7.1-2) ...
Selecting previously unselected package libhogweed2:amd64.
Preparing to unpack .../libhogweed2_2.7.1-2_amd64.deb ...
Unpacking libhogweed2:amd64 (2.7.1-2) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../librtmp1_2.4+20131018.git79459a2-2_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20131018.git79459a2-2) ...
Preparing to unpack .../libcurl3-gnutls_7.35.0-1ubuntu3_amd64.deb ...
Unpacking libcurl3-gnutls:amd64 (7.35.0-1ubuntu3) over (7.35.0-1ubuntu2) ...
Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-9_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-9) over (2.1.25.dfsg1-17build1) ...
Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-9_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-9) over (2.1.25.dfsg1-17build1) ...
Preparing to unpack .../libitm1_4.9.0-1ubuntu3_amd64.deb ...
Unpacking libitm1:amd64 (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../libgomp1_4.9.0-1ubuntu3_amd64.deb ...
Unpacking libgomp1:amd64 (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../g++-4.8_4.8.2-21ubuntu1_amd64.deb ...
Unpacking g++-4.8 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../libstdc++-4.8-dev_4.8.2-21ubuntu1_amd64.deb ...
Unpacking libstdc++-4.8-dev:amd64 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../gcc-4.8_4.8.2-21ubuntu1_amd64.deb ...
Unpacking gcc-4.8 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../cpp-4.8_4.8.2-21ubuntu1_amd64.deb ...
Unpacking cpp-4.8 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../binutils_2.24.51.20140425-0ubuntu2_amd64.deb ...
Unpacking binutils (2.24.51.20140425-0ubuntu2) over (2.24-5ubuntu3) ...
Preparing to unpack .../libatomic1_4.9.0-1ubuntu3_amd64.deb ...
Unpacking libatomic1:amd64 (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../libtsan0_4.9.0-1ubuntu3_amd64.deb ...
Unpacking libtsan0:amd64 (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../libquadmath0_4.9.0-1ubuntu3_amd64.deb ...
Unpacking libquadmath0:amd64 (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../libgcc-4.8-dev_4.8.2-21ubuntu1_amd64.deb ...
Unpacking libgcc-4.8-dev:amd64 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../libasan0_4.8.2-21ubuntu1_amd64.deb ...
Unpacking libasan0:amd64 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../gcc-4.8-base_4.8.2-21ubuntu1_amd64.deb ...
Unpacking gcc-4.8-base:amd64 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ...
Preparing to unpack .../iproute2_3.14.0-1_amd64.deb ...
Unpacking iproute2 (3.14.0-1) over (3.12.0-2) ...
Preparing to unpack .../libjson0_0.11-4ubuntu1_amd64.deb ...
Unpacking libjson0:amd64 (0.11-4ubuntu1) over (0.11-3ubuntu1) ...
Preparing to unpack .../apt-transport-https_1.0.2ubuntu2_amd64.deb ...
Unpacking apt-transport-https (1.0.2ubuntu2) over (1.0.1ubuntu2) ...
Preparing to unpack .../advancecomp_1.19-1_amd64.deb ...
Unpacking advancecomp (1.19-1) over (1.18-1) ...
Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) over (2.3000-1) ...
Preparing to unpack .../dpkg-dev_1.17.7ubuntu1_all.deb ...
Unpacking dpkg-dev (1.17.7ubuntu1) over (1.17.5ubuntu5) ...
Preparing to unpack .../libdpkg-perl_1.17.7ubuntu1_all.deb ...
Unpacking libdpkg-perl (1.17.7ubuntu1) over (1.17.5ubuntu5) ...
Preparing to unpack .../patch_2.7.1-5_amd64.deb ...
Unpacking patch (2.7.1-5) over (2.7.1-4) ...
Setting up libjson-c2:amd64 (0.11-4ubuntu1) ...
Setting up libkmod2:amd64 (16-2ubuntu2) ...
Setting up libudev1:amd64 (204-8ubuntu1) ...
Setting up udev (204-8ubuntu1) ...
invoke-rc.d: policy-rc.d denied execution of restart.
Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev'
update-initramfs: deferring update (trigger activated)
Setting up kmod (16-2ubuntu2) ...
Installing new version of config file /etc/init.d/kmod ...
Setting up module-init-tools (16-2ubuntu2) ...
Setting up libnettle4:amd64 (2.7.1-2) ...
Setting up libhogweed2:amd64 (2.7.1-2) ...
Setting up librtmp1:amd64 (2.4+20131018.git79459a2-2) ...
Setting up libcurl3-gnutls:amd64 (7.35.0-1ubuntu3) ...
Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-9) ...
Setting up libsasl2-2:amd64 (2.1.26.dfsg1-9) ...
Setting up libitm1:amd64 (4.9.0-1ubuntu3) ...
Setting up libgomp1:amd64 (4.9.0-1ubuntu3) ...
Setting up gcc-4.8-base:amd64 (4.8.2-21ubuntu1) ...
Setting up cpp-4.8 (4.8.2-21ubuntu1) ...
Setting up binutils (2.24.51.20140425-0ubuntu2) ...
Setting up libatomic1:amd64 (4.9.0-1ubuntu3) ...
Setting up libasan0:amd64 (4.8.2-21ubuntu1) ...
Setting up libtsan0:amd64 (4.9.0-1ubuntu3) ...
Setting up libquadmath0:amd64 (4.9.0-1ubuntu3) ...
Setting up libgcc-4.8-dev:amd64 (4.8.2-21ubuntu1) ...
Setting up gcc-4.8 (4.8.2-21ubuntu1) ...
Setting up libstdc++-4.8-dev:amd64 (4.8.2-21ubuntu1) ...
Setting up g++-4.8 (4.8.2-21ubuntu1) ...
Setting up iproute2 (3.14.0-1) ...
Setting up libjson0:amd64 (0.11-4ubuntu1) ...
Setting up apt-transport-https (1.0.2ubuntu2) ...
Setting up advancecomp (1.19-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libdpkg-perl (1.17.7ubuntu1) ...
Setting up patch (2.7.1-5) ...
Setting up dpkg-dev (1.17.7ubuntu1) ...
Processing triggers for libc-bin (2.19-0ubuntu6) ...
Processing triggers for initramfs-tools (0.103ubuntu4) ...
RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5949173', 'amd64', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'mira_4.0.2-1.dsc']
Initiating build PACKAGEBUILD-5949173 with 8 jobs across 8 processor cores.
Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64
Automatic build of mira_4.0.2-1 on panlong by sbuild/amd64 1.170.5
Build started at 20140427-0542
******************************************************************************
mira_4.0.2-1.dsc exists in cwd
** Using build dependencies supplied by package:
Build-Depends: debhelper (>= 9), dblatex, dh-autoreconf, autoconf-archive, docbook-xsl, libboost-all-dev, libbz2-dev, libexpat1-dev, libgoogle-perftools-dev [i386 amd64], perl, flex, vim-common, zlib1g-dev
Checking for already installed source dependencies...
debhelper: missing
dblatex: missing
dh-autoreconf: missing
autoconf-archive: missing
docbook-xsl: missing
libboost-all-dev: missing
libbz2-dev: missing
libexpat1-dev: missing
libgoogle-perftools-dev: missing
perl: already installed (5.18.2-2ubuntu1)
flex: missing
vim-common: missing
zlib1g-dev: missing
Checking for source dependency conflicts...
  /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dblatex dh-autoreconf autoconf-archive docbook-xsl libboost-all-dev libbz2-dev libexpat1-dev libgoogle-perftools-dev flex vim-common zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  librtmp0
Use 'apt-get autoremove' to remove it.
The following extra packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dh-apparmor
  docbook-xml file fontconfig-config fonts-dejavu-core gettext gettext-base
  groff-base icu-devtools intltool-debian libapt-inst1.5 libasprintf0c2
  libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic-dev
  libboost-atomic1.55-dev libboost-atomic1.55.0 libboost-chrono-dev
  libboost-chrono1.55-dev libboost-chrono1.55.0 libboost-context-dev
  libboost-context1.55-dev libboost-context1.55.0 libboost-coroutine-dev
  libboost-coroutine1.55-dev libboost-date-time-dev libboost-date-time1.55-dev
  libboost-date-time1.55.0 libboost-dev libboost-exception-dev
  libboost-exception1.55-dev libboost-filesystem-dev
  libboost-filesystem1.55-dev libboost-filesystem1.55.0 libboost-graph-dev
  libboost-graph-parallel-dev libboost-graph-parallel1.55-dev
  libboost-graph-parallel1.55.0 libboost-graph1.55-dev libboost-graph1.55.0
  libboost-iostreams-dev libboost-iostreams1.55-dev libboost-iostreams1.55.0
  libboost-locale-dev libboost-locale1.55-dev libboost-locale1.55.0
  libboost-log-dev libboost-log1.55-dev libboost-log1.55.0 libboost-math-dev
  libboost-math1.55-dev libboost-math1.55.0 libboost-mpi-dev
  libboost-mpi-python-dev libboost-mpi-python1.55-dev
  libboost-mpi-python1.55.0 libboost-mpi1.55-dev libboost-mpi1.55.0
  libboost-program-options-dev libboost-program-options1.55-dev
  libboost-program-options1.55.0 libboost-python-dev libboost-python1.55-dev
  libboost-python1.55.0 libboost-random-dev libboost-random1.55-dev
  libboost-random1.55.0 libboost-regex-dev libboost-regex1.55-dev
  libboost-regex1.55.0 libboost-serialization-dev
  libboost-serialization1.55-dev libboost-serialization1.55.0
  libboost-signals-dev libboost-signals1.55-dev libboost-signals1.55.0
  libboost-system-dev libboost-system1.55-dev libboost-system1.55.0
  libboost-test-dev libboost-test1.55-dev libboost-test1.55.0
  libboost-thread-dev libboost-thread1.55-dev libboost-thread1.55.0
  libboost-timer-dev libboost-timer1.55-dev libboost-timer1.55.0
  libboost-tools-dev libboost-wave-dev libboost-wave1.55-dev
  libboost-wave1.55.0 libboost1.55-dev libboost1.55-tools-dev libcairo2 libcr0
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libfl-dev
  libfontconfig1 libfreetype6 libglib2.0-0 libgoogle-perftools4 libgraphite2-3
  libgs9 libgs9-common libharfbuzz0b libhwloc-dev libhwloc5 libibverbs-dev
  libibverbs1 libice6 libicu-dev libicu52 libijs-0.35 libjbig0 libjbig2dec0
  libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libltdl7 libmagic1 libnuma1
  libopenmpi-dev libopenmpi1.6 libpaper-utils libpaper1 libpci-dev libpci3
  libpipeline1 libpixman-1-0 libpoppler44 libptexenc1 libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libsigsegv2 libsm6 libtcmalloc-minimal4 libtiff5 libtool
  libtorque2 libunistring0 libunwind8 libunwind8-dev libx11-6 libx11-data
  libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
  libxml2 libxml2-dev libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 luatex m4
  man-db mime-support mpi-default-bin mpi-default-dev openmpi-bin
  openmpi-common po-debconf poppler-data preview-latex-style python python-apt
  python-apt-common python-dev python-minimal python2.7 python2.7-dev
  python2.7-minimal sgml-base sgml-data tex-common texlive texlive-base
  texlive-bibtex-extra texlive-binaries texlive-extra-utils
  texlive-fonts-recommended texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-math-extra texlive-pictures ucf x11-common
  xdg-utils xml-core xsltproc
Suggested packages:
  autoconf2.13 gnu-standards autoconf-doc wamerican wordlist whois vacation
  docbook ghostscript graphicsmagick-imagemagick-compat imagemagick
  latex-cjk-all lmodern opensp pdf-viewer texlive-lang-cyrillic texlive-xetex
  transfig dh-make apparmor-easyprof docbook-dsssl docbook-defguide dbtoepub
  docbook-xsl-doc-html docbook-xsl-doc-pdf docbook-xsl-doc-text
  docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java
  libxslthl-java xalan bison gettext-doc groff libboost-doc graphviz python3
  libboost1.55-doc libmpfrc++-dev libntl-dev doxygen default-jdk blcr-dkms
  cups-common fonts-droid libhwloc-contrib-plugins icu-doc liblcms2-utils
  libtool-doc automaken gfortran fortran95-compiler gcj-jdk pkg-config less
  www-browser openmpi-checkpoint libmail-box-perl poppler-utils
  fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic
  fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum
  python-doc python-tk python-apt-dbg python-gtk2 python-vte python-apt-doc
  python2.7-doc binfmt-support sgml-base-doc perlsgml w3-recs perl-tk gv
  postscript-viewer chktex fragmaster dvipng latexdiff purifyeps lacheck
  dvidvi xindy latexmk python-pygments libfile-which-perl libtcltk-ruby
  dot2tex gvfs-bin
Recommended packages:
  libxml2-utils curl wget lynx-cur libasprintf-dev libgettextpo-dev gccxml
  libglib2.0-data shared-mime-info libhwloc-plugins libltdl-dev texlive-luatex
  libmail-sendmail-perl lsb-release iso-codes ruby wish
  texlive-fonts-recommended-doc tex-gyre tipa texlive-latex-base-doc
  texlive-latex-extra-doc texlive-latex-recommended-doc prosper
  texlive-pictures-doc vim vim-gnome vim-gtk vim-athena vim-nox vim-tiny
  libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils
  dblatex debhelper dh-apparmor dh-autoreconf docbook-xml docbook-xsl file
  flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
  icu-devtools intltool-debian libapt-inst1.5 libasprintf0c2 libavahi-client3
  libavahi-common-data libavahi-common3 libboost-all-dev libboost-atomic-dev
  libboost-atomic1.55-dev libboost-atomic1.55.0 libboost-chrono-dev
  libboost-chrono1.55-dev libboost-chrono1.55.0 libboost-context-dev
  libboost-context1.55-dev libboost-context1.55.0 libboost-coroutine-dev
  libboost-coroutine1.55-dev libboost-date-time-dev libboost-date-time1.55-dev
  libboost-date-time1.55.0 libboost-dev libboost-exception-dev
  libboost-exception1.55-dev libboost-filesystem-dev
  libboost-filesystem1.55-dev libboost-filesystem1.55.0 libboost-graph-dev
  libboost-graph-parallel-dev libboost-graph-parallel1.55-dev
  libboost-graph-parallel1.55.0 libboost-graph1.55-dev libboost-graph1.55.0
  libboost-iostreams-dev libboost-iostreams1.55-dev libboost-iostreams1.55.0
  libboost-locale-dev libboost-locale1.55-dev libboost-locale1.55.0
  libboost-log-dev libboost-log1.55-dev libboost-log1.55.0 libboost-math-dev
  libboost-math1.55-dev libboost-math1.55.0 libboost-mpi-dev
  libboost-mpi-python-dev libboost-mpi-python1.55-dev
  libboost-mpi-python1.55.0 libboost-mpi1.55-dev libboost-mpi1.55.0
  libboost-program-options-dev libboost-program-options1.55-dev
  libboost-program-options1.55.0 libboost-python-dev libboost-python1.55-dev
  libboost-python1.55.0 libboost-random-dev libboost-random1.55-dev
  libboost-random1.55.0 libboost-regex-dev libboost-regex1.55-dev
  libboost-regex1.55.0 libboost-serialization-dev
  libboost-serialization1.55-dev libboost-serialization1.55.0
  libboost-signals-dev libboost-signals1.55-dev libboost-signals1.55.0
  libboost-system-dev libboost-system1.55-dev libboost-system1.55.0
  libboost-test-dev libboost-test1.55-dev libboost-test1.55.0
  libboost-thread-dev libboost-thread1.55-dev libboost-thread1.55.0
  libboost-timer-dev libboost-timer1.55-dev libboost-timer1.55.0
  libboost-tools-dev libboost-wave-dev libboost-wave1.55-dev
  libboost-wave1.55.0 libboost1.55-dev libboost1.55-tools-dev libbz2-dev
  libcairo2 libcr0 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1
  libexpat1-dev libfl-dev libfontconfig1 libfreetype6 libglib2.0-0
  libgoogle-perftools-dev libgoogle-perftools4 libgraphite2-3 libgs9
  libgs9-common libharfbuzz0b libhwloc-dev libhwloc5 libibverbs-dev
  libibverbs1 libice6 libicu-dev libicu52 libijs-0.35 libjbig0 libjbig2dec0
  libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libltdl7 libmagic1 libnuma1
  libopenmpi-dev libopenmpi1.6 libpaper-utils libpaper1 libpci-dev libpci3
  libpipeline1 libpixman-1-0 libpoppler44 libptexenc1 libpython-dev
  libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libsigsegv2 libsm6 libtcmalloc-minimal4 libtiff5 libtool
  libtorque2 libunistring0 libunwind8 libunwind8-dev libx11-6 libx11-data
  libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
  libxml2 libxml2-dev libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 luatex m4
  man-db mime-support mpi-default-bin mpi-default-dev openmpi-bin
  openmpi-common po-debconf poppler-data preview-latex-style python python-apt
  python-apt-common python-dev python-minimal python2.7 python2.7-dev
  python2.7-minimal sgml-base sgml-data tex-common texlive texlive-base
  texlive-bibtex-extra texlive-binaries texlive-extra-utils
  texlive-fonts-recommended texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-math-extra texlive-pictures ucf vim-common
  x11-common xdg-utils xml-core xsltproc zlib1g-dev
0 upgraded, 224 newly installed, 0 to remove and 0 not upgraded.
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Get:1 http://ftpmaster.internal/ubuntu/ utopic/main libapt-inst1.5 amd64 1.0.2ubuntu2 [58.8 kB]
Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libexpat1 amd64 2.1.0-4ubuntu1 [71.1 kB]
Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 amd64 1:5.14-2ubuntu3 [183 kB]
Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 amd64 0.18.3.2-1ubuntu1 [6392 B]
Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 amd64 2.40.0-2 [1057 kB]
Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libnuma1 amd64 2.0.9~rc5-1ubuntu2 [20.3 kB]
Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libpci3 amd64 1:3.2.1-1ubuntu5 [26.1 kB]
Get:8 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 amd64 1.3.0-1 [24.0 kB]
Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libxau6 amd64 1:1.0.8-1 [8376 B]
Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libxdmcp6 amd64 1:1.1.1-1 [12.8 kB]
Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libxcb1 amd64 1.10-2ubuntu1 [38.0 kB]
Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libx11-data all 2:1.6.2-1ubuntu2 [111 kB]
Get:13 http://ftpmaster.internal/ubuntu/ utopic/main libx11-6 amd64 2:1.6.2-1ubuntu2 [560 kB]
Get:14 http://ftpmaster.internal/ubuntu/ utopic/main libxext6 amd64 2:1.3.2-1 [33.9 kB]
Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 amd64 2.9.1+dfsg1-3ubuntu4 [571 kB]
Get:16 http://ftpmaster.internal/ubuntu/ utopic/main groff-base amd64 1.22.2-5 [1053 kB]
Get:17 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB]
Get:18 http://ftpmaster.internal/ubuntu/ utopic/main man-db amd64 2.6.7.1-1 [858 kB]
Get:19 http://ftpmaster.internal/ubuntu/ utopic/main sgml-base all 1.26+nmu4ubuntu1 [12.5 kB]
Get:20 http://ftpmaster.internal/ubuntu/ utopic/universe autoconf-archive all 20140228-1 [731 kB]
Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libsigsegv2 amd64 2.10-2 [15.0 kB]
Get:22 http://ftpmaster.internal/ubuntu/ utopic/main m4 amd64 1.4.17-2ubuntu1 [195 kB]
Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libfl-dev amd64 2.5.39-3ubuntu1 [12.6 kB]
Get:24 http://ftpmaster.internal/ubuntu/ utopic/main flex amd64 2.5.39-3ubuntu1 [841 kB]
Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libavahi-common-data amd64 0.6.31-4ubuntu1 [21.2 kB]
Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libavahi-common3 amd64 0.6.31-4ubuntu1 [21.7 kB]
Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libavahi-client3 amd64 0.6.31-4ubuntu1 [25.1 kB]
Get:28 http://ftpmaster.internal/ubuntu/ utopic/main libboost-atomic1.55.0 amd64 1.55.0-1ubuntu2 [8350 B]
Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libboost-system1.55.0 amd64 1.55.0-1ubuntu2 [10.4 kB]
Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libboost-chrono1.55.0 amd64 1.55.0-1ubuntu2 [12.6 kB]
Get:31 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-context1.55.0 amd64 1.55.0-1ubuntu2 [8304 B]
Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libboost-date-time1.55.0 amd64 1.55.0-1ubuntu2 [21.1 kB]
Get:33 http://ftpmaster.internal/ubuntu/ utopic/main libboost-filesystem1.55.0 amd64 1.55.0-1ubuntu2 [34.2 kB]
Get:34 http://ftpmaster.internal/ubuntu/ utopic/main libboost-serialization1.55.0 amd64 1.55.0-1ubuntu2 [126 kB]
Get:35 http://ftpmaster.internal/ubuntu/ utopic/universe libcr0 amd64 0.8.5-2.1 [18.6 kB]
Get:36 http://ftpmaster.internal/ubuntu/ utopic/main libltdl7 amd64 2.4.2-1.7ubuntu1 [35.0 kB]
Get:37 http://ftpmaster.internal/ubuntu/ utopic/universe libhwloc5 amd64 1.8-1ubuntu1 [77.9 kB]
Get:38 http://ftpmaster.internal/ubuntu/ utopic/main libibverbs1 amd64 1.1.7-1ubuntu1 [23.3 kB]
Get:39 http://ftpmaster.internal/ubuntu/ utopic/universe libtorque2 amd64 2.4.16+dfsg-1.3ubuntu1 [76.3 kB]
Get:40 http://ftpmaster.internal/ubuntu/ utopic/universe libopenmpi1.6 amd64 1.6.5-8 [1396 kB]
Get:41 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-mpi1.55.0 amd64 1.55.0-1ubuntu2 [47.0 kB]
Get:42 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-graph-parallel1.55.0 amd64 1.55.0-1ubuntu2 [71.3 kB]
Get:43 http://ftpmaster.internal/ubuntu/ utopic/main libicu52 amd64 52.1-3 [6770 kB]
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Get:45 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-graph1.55.0 amd64 1.55.0-1ubuntu2 [94.7 kB]
Get:46 http://ftpmaster.internal/ubuntu/ utopic/main libboost-iostreams1.55.0 amd64 1.55.0-1ubuntu2 [28.3 kB]
Get:47 http://ftpmaster.internal/ubuntu/ utopic/main libboost-thread1.55.0 amd64 1.55.0-1ubuntu2 [27.4 kB]
Get:48 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-locale1.55.0 amd64 1.55.0-1ubuntu2 [211 kB]
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Get:50 http://ftpmaster.internal/ubuntu/ utopic/main libboost-python1.55.0 amd64 1.55.0-1ubuntu2 [122 kB]
Get:51 http://ftpmaster.internal/ubuntu/ utopic/main libpython2.7-minimal amd64 2.7.6-8 [307 kB]
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Get:59 http://ftpmaster.internal/ubuntu/ utopic/universe openmpi-common all 1.6.5-8 [101 kB]
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Get:61 http://ftpmaster.internal/ubuntu/ utopic/universe mpi-default-bin amd64 1.0.2ubuntu1 [3252 B]
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Get:63 http://ftpmaster.internal/ubuntu/ utopic/main libboost-program-options1.55.0 amd64 1.55.0-1ubuntu2 [115 kB]
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Get:71 http://ftpmaster.internal/ubuntu/ utopic/main fontconfig-config all 2.11.0-0ubuntu4 [47.3 kB]
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Get:78 http://ftpmaster.internal/ubuntu/ utopic/main libcairo2 amd64 1.13.0~20140204-0ubuntu1 [535 kB]
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Get:85 http://ftpmaster.internal/ubuntu/ utopic/main libcupsfilters1 amd64 1.0.52-0ubuntu1 [74.3 kB]
Get:86 http://ftpmaster.internal/ubuntu/ utopic/main libcupsimage2 amd64 1.7.2-0ubuntu1 [15.3 kB]
Get:87 http://ftpmaster.internal/ubuntu/ utopic/main libgraphite2-3 amd64 1.2.4-1ubuntu1 [53.8 kB]
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Get:89 http://ftpmaster.internal/ubuntu/ utopic/main x11-common all 1:7.7+1ubuntu8 [49.8 kB]
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Get:95 http://ftpmaster.internal/ubuntu/ utopic/main libpython2.7 amd64 2.7.6-8 [1044 kB]
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Get:99 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 amd64 0.9.3-5ubuntu3 [271 kB]
Get:100 http://ftpmaster.internal/ubuntu/ utopic/main libunwind8 amd64 1.1-2.2ubuntu3 [48.3 kB]
Get:101 http://ftpmaster.internal/ubuntu/ utopic/main libxt6 amd64 1:1.1.4-1 [185 kB]
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Get:103 http://ftpmaster.internal/ubuntu/ utopic/main libxpm4 amd64 1:3.5.10-1 [38.3 kB]
Get:104 http://ftpmaster.internal/ubuntu/ utopic/main libxaw7 amd64 2:1.0.12-1 [168 kB]
Get:105 http://ftpmaster.internal/ubuntu/ utopic/main libxslt1.1 amd64 1.1.28-2build1 [145 kB]
Get:106 http://ftpmaster.internal/ubuntu/ utopic/main poppler-data all 0.4.6-5 [1523 kB]
Get:107 http://ftpmaster.internal/ubuntu/ utopic/main file amd64 1:5.14-2ubuntu3 [18.8 kB]
Get:108 http://ftpmaster.internal/ubuntu/ utopic/main vim-common amd64 2:7.4.253-1ubuntu1 [95.3 kB]
Get:109 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base amd64 0.18.3.2-1ubuntu1 [48.5 kB]
Get:110 http://ftpmaster.internal/ubuntu/ utopic/main python-apt-common all 0.9.3.6 [17.2 kB]
Get:111 http://ftpmaster.internal/ubuntu/ utopic/main xml-core all 0.13+nmu2 [23.3 kB]
Get:112 http://ftpmaster.internal/ubuntu/ utopic/main autoconf all 2.69-6 [322 kB]
Get:113 http://ftpmaster.internal/ubuntu/ utopic/main autotools-dev all 20130810.1 [44.3 kB]
Get:114 http://ftpmaster.internal/ubuntu/ utopic/main automake all 1:1.14.1-2ubuntu1 [510 kB]
Get:115 http://ftpmaster.internal/ubuntu/ utopic/main autopoint all 0.18.3.2-1ubuntu1 [370 kB]
Get:116 http://ftpmaster.internal/ubuntu/ utopic/main sgml-data all 2.0.9-1 [277 kB]
Get:117 http://ftpmaster.internal/ubuntu/ utopic/main docbook-xml all 4.5-7.2 [336 kB]
Get:118 http://ftpmaster.internal/ubuntu/ utopic/main xsltproc amd64 1.1.28-2build1 [13.6 kB]
Get:119 http://ftpmaster.internal/ubuntu/ utopic/main python-apt amd64 0.9.3.6 [140 kB]
Get:120 http://ftpmaster.internal/ubuntu/ utopic/main tex-common all 4.04 [621 kB]
Get:121 http://ftpmaster.internal/ubuntu/ utopic/main libkpathsea6 amd64 2013.20130729.30972-2build3 [63.5 kB]
Get:122 http://ftpmaster.internal/ubuntu/ utopic/main luatex amd64 0.76.0-3ubuntu1 [2776 kB]
Get:123 http://ftpmaster.internal/ubuntu/ utopic/main libjbig2dec0 amd64 0.11+20120125-1ubuntu1 [48.6 kB]
Get:124 http://ftpmaster.internal/ubuntu/ utopic/main libgs9-common all 9.10~dfsg-0ubuntu10 [2068 kB]
Get:125 http://ftpmaster.internal/ubuntu/ utopic/main libgs9 amd64 9.10~dfsg-0ubuntu10 [1942 kB]
Get:126 http://ftpmaster.internal/ubuntu/ utopic/main libptexenc1 amd64 2013.20130729.30972-2build3 [33.9 kB]
Get:127 http://ftpmaster.internal/ubuntu/ utopic/main texlive-binaries amd64 2013.20130729.30972-2build3 [4059 kB]
Get:128 http://ftpmaster.internal/ubuntu/ utopic/main xdg-utils all 1.1.0~rc1-2ubuntu7 [65.6 kB]
Get:129 http://ftpmaster.internal/ubuntu/ utopic/main libpaper-utils amd64 1.1.24+nmu2ubuntu3 [8244 B]
Get:130 http://ftpmaster.internal/ubuntu/ utopic/main texlive-base all 2013.20140408-1 [16.2 MB]
Get:131 http://ftpmaster.internal/ubuntu/ utopic/main texlive-fonts-recommended all 2013.20140408-1 [5722 kB]
Get:132 http://ftpmaster.internal/ubuntu/ utopic/main texlive-latex-base all 2013.20140408-1 [836 kB]
Get:133 http://ftpmaster.internal/ubuntu/ utopic/main texlive-latex-recommended all 2013.20140408-1 [7500 kB]
Get:134 http://ftpmaster.internal/ubuntu/ utopic/main texlive all 2013.20140408-1 [14.3 kB]
Get:135 http://ftpmaster.internal/ubuntu/ utopic/main texlive-bibtex-extra all 2013.20140408-1 [32.7 MB]
Get:136 http://ftpmaster.internal/ubuntu/ utopic/main preview-latex-style all 11.87-1ubuntu2 [187 kB]
Get:137 http://ftpmaster.internal/ubuntu/ utopic/main texlive-pictures all 2013.20140408-1 [2962 kB]
Get:138 http://ftpmaster.internal/ubuntu/ utopic/main texlive-latex-extra all 2013.20140408-1 [7311 kB]
Get:139 http://ftpmaster.internal/ubuntu/ utopic/main texlive-math-extra all 2013.20140408-1 [14.2 MB]
Get:140 http://ftpmaster.internal/ubuntu/ utopic/main texlive-extra-utils all 2013.20140408-1 [10.3 MB]
Get:141 http://ftpmaster.internal/ubuntu/ utopic/main dblatex all 0.3.4-3build1 [1405 kB]
Get:142 http://ftpmaster.internal/ubuntu/ utopic/main gettext amd64 0.18.3.2-1ubuntu1 [831 kB]
Get:143 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB]
Get:144 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB]
Get:145 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.95~2430-0ubuntu5 [11.3 kB]
Get:146 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20131227ubuntu1 [604 kB]
Get:147 http://ftpmaster.internal/ubuntu/ utopic/main libtool amd64 2.4.2-1.7ubuntu1 [188 kB]
Get:148 http://ftpmaster.internal/ubuntu/ utopic/main dh-autoreconf all 9 [15.5 kB]
Get:149 http://ftpmaster.internal/ubuntu/ utopic/main docbook-xsl all 1.78.1+dfsg-1 [2146 kB]
Get:150 http://ftpmaster.internal/ubuntu/ utopic/main icu-devtools amd64 52.1-3 [163 kB]
Get:151 http://ftpmaster.internal/ubuntu/ utopic/main libboost1.55-dev amd64 1.55.0-1ubuntu2 [5768 kB]
Get:152 http://ftpmaster.internal/ubuntu/ utopic/main libboost-dev amd64 1.55.0.1~ubuntu1 [3218 B]
Get:153 http://ftpmaster.internal/ubuntu/ utopic/main libboost1.55-tools-dev amd64 1.55.0-1ubuntu2 [1059 kB]
Get:154 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-tools-dev amd64 1.55.0.1~ubuntu1 [3044 B]
Get:155 http://ftpmaster.internal/ubuntu/ utopic/main libboost-atomic1.55-dev amd64 1.55.0-1ubuntu2 [4930 B]
Get:156 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-atomic-dev amd64 1.55.0.1~ubuntu1 [3176 B]
Get:157 http://ftpmaster.internal/ubuntu/ utopic/main libboost-chrono1.55-dev amd64 1.55.0-1ubuntu2 [14.2 kB]
Get:158 http://ftpmaster.internal/ubuntu/ utopic/main libboost-chrono-dev amd64 1.55.0.1~ubuntu1 [3514 B]
Get:159 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-context1.55-dev amd64 1.55.0-1ubuntu2 [4782 B]
Get:160 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-context-dev amd64 1.55.0.1~ubuntu1 [3078 B]
Get:161 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-coroutine1.55-dev amd64 1.55.0-1ubuntu2 [9290 B]
Get:162 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-coroutine-dev amd64 1.55.0.1~ubuntu1 [3136 B]
Get:163 http://ftpmaster.internal/ubuntu/ utopic/main libboost-serialization1.55-dev amd64 1.55.0-1ubuntu2 [151 kB]
Get:164 http://ftpmaster.internal/ubuntu/ utopic/main libboost-date-time1.55-dev amd64 1.55.0-1ubuntu2 [25.2 kB]
Get:165 http://ftpmaster.internal/ubuntu/ utopic/main libboost-date-time-dev amd64 1.55.0.1~ubuntu1 [2878 B]
Get:166 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-exception1.55-dev amd64 1.55.0-1ubuntu2 [4400 B]
Get:167 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-exception-dev amd64 1.55.0.1~ubuntu1 [2872 B]
Get:168 http://ftpmaster.internal/ubuntu/ utopic/main libboost-system1.55-dev amd64 1.55.0-1ubuntu2 [8440 B]
Get:169 http://ftpmaster.internal/ubuntu/ utopic/main libboost-filesystem1.55-dev amd64 1.55.0-1ubuntu2 [41.6 kB]
Get:170 http://ftpmaster.internal/ubuntu/ utopic/main libboost-filesystem-dev amd64 1.55.0.1~ubuntu1 [2908 B]
Get:171 http://ftpmaster.internal/ubuntu/ utopic/main libboost-test1.55-dev amd64 1.55.0-1ubuntu2 [214 kB]
Get:172 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-graph1.55-dev amd64 1.55.0-1ubuntu2 [98.4 kB]
Get:173 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-graph-dev amd64 1.55.0.1~ubuntu1 [2966 B]
Get:174 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-graph-parallel1.55-dev amd64 1.55.0-1ubuntu2 [72.6 kB]
Get:175 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-graph-parallel-dev amd64 1.55.0.1~ubuntu1 [2990 B]
Get:176 http://ftpmaster.internal/ubuntu/ utopic/main libicu-dev amd64 52.1-3 [7582 kB]
Get:177 http://ftpmaster.internal/ubuntu/ utopic/main libboost-regex1.55-dev amd64 1.55.0-1ubuntu2 [302 kB]
Get:178 http://ftpmaster.internal/ubuntu/ utopic/main libboost-iostreams1.55-dev amd64 1.55.0-1ubuntu2 [30.8 kB]
Get:179 http://ftpmaster.internal/ubuntu/ utopic/main libboost-iostreams-dev amd64 1.55.0.1~ubuntu1 [2866 B]
Get:180 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-locale1.55-dev amd64 1.55.0-1ubuntu2 [277 kB]
Get:181 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-locale-dev amd64 1.55.0.1~ubuntu1 [3210 B]
Get:182 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-log1.55.0 amd64 1.55.0-1ubuntu2 [499 kB]
Get:183 http://ftpmaster.internal/ubuntu/ utopic/main libboost-thread1.55-dev amd64 1.55.0-1ubuntu2 [26.4 kB]
Get:184 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-log1.55-dev amd64 1.55.0-1ubuntu2 [589 kB]
Get:185 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-log-dev amd64 1.55.0.1~ubuntu1 [3074 B]
Get:186 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-math1.55-dev amd64 1.55.0-1ubuntu2 [667 kB]
Get:187 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-math-dev amd64 1.55.0.1~ubuntu1 [3072 B]
Get:188 http://ftpmaster.internal/ubuntu/ utopic/main libibverbs-dev amd64 1.1.7-1ubuntu1 [68.1 kB]
Get:189 http://ftpmaster.internal/ubuntu/ utopic/main libxml2-dev amd64 2.9.1+dfsg1-3ubuntu4 [628 kB]
Get:190 http://ftpmaster.internal/ubuntu/ utopic/main zlib1g-dev amd64 1:1.2.8.dfsg-1ubuntu1 [183 kB]
Get:191 http://ftpmaster.internal/ubuntu/ utopic/main libpci-dev amd64 1:3.2.1-1ubuntu5 [43.9 kB]
Get:192 http://ftpmaster.internal/ubuntu/ utopic/universe libhwloc-dev amd64 1.8-1ubuntu1 [130 kB]
Get:193 http://ftpmaster.internal/ubuntu/ utopic/universe libopenmpi-dev amd64 1.6.5-8 [379 kB]
Get:194 http://ftpmaster.internal/ubuntu/ utopic/universe mpi-default-dev amd64 1.0.2ubuntu1 [3822 B]
Get:195 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-mpi1.55-dev amd64 1.55.0-1ubuntu2 [121 kB]
Get:196 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-mpi-dev amd64 1.55.0.1~ubuntu1 [2952 B]
Get:197 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-mpi-python1.55-dev amd64 1.55.0-1ubuntu2 [23.5 kB]
Get:198 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-mpi-python-dev amd64 1.55.0.1~ubuntu1 [2986 B]
Get:199 http://ftpmaster.internal/ubuntu/ utopic/main libboost-program-options1.55-dev amd64 1.55.0-1ubuntu2 [133 kB]
Get:200 http://ftpmaster.internal/ubuntu/ utopic/main libboost-program-options-dev amd64 1.55.0.1~ubuntu1 [2890 B]
Get:201 http://ftpmaster.internal/ubuntu/ utopic/main libpython-dev amd64 2.7.5-5ubuntu3 [7078 B]
Get:202 http://ftpmaster.internal/ubuntu/ utopic/main python2.7-dev amd64 2.7.6-8 [269 kB]
Get:203 http://ftpmaster.internal/ubuntu/ utopic/main python-dev amd64 2.7.5-5ubuntu3 [1166 B]
Get:204 http://ftpmaster.internal/ubuntu/ utopic/main libboost-python1.55-dev amd64 1.55.0-1ubuntu2 [147 kB]
Get:205 http://ftpmaster.internal/ubuntu/ utopic/main libboost-python-dev amd64 1.55.0.1~ubuntu1 [3264 B]
Get:206 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-random1.55-dev amd64 1.55.0-1ubuntu2 [6356 B]
Get:207 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-random-dev amd64 1.55.0.1~ubuntu1 [2866 B]
Get:208 http://ftpmaster.internal/ubuntu/ utopic/main libboost-regex-dev amd64 1.55.0.1~ubuntu1 [3132 B]
Get:209 http://ftpmaster.internal/ubuntu/ utopic/main libboost-serialization-dev amd64 1.55.0.1~ubuntu1 [3102 B]
Get:210 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-signals1.55-dev amd64 1.55.0-1ubuntu2 [31.0 kB]
Get:211 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-signals-dev amd64 1.55.0.1~ubuntu1 [2938 B]
Get:212 http://ftpmaster.internal/ubuntu/ utopic/main libboost-system-dev amd64 1.55.0.1~ubuntu1 [3010 B]
Get:213 http://ftpmaster.internal/ubuntu/ utopic/main libboost-test-dev amd64 1.55.0.1~ubuntu1 [2908 B]
Get:214 http://ftpmaster.internal/ubuntu/ utopic/main libboost-thread-dev amd64 1.55.0.1~ubuntu1 [2902 B]
Get:215 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-timer1.55-dev amd64 1.55.0-1ubuntu2 [9548 B]
Get:216 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-timer-dev amd64 1.55.0.1~ubuntu1 [2990 B]
Get:217 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-wave1.55-dev amd64 1.55.0-1ubuntu2 [210 kB]
Get:218 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-wave-dev amd64 1.55.0.1~ubuntu1 [2904 B]
Get:219 http://ftpmaster.internal/ubuntu/ utopic/universe libboost-all-dev amd64 1.55.0.1~ubuntu1 [2294 B]
Get:220 http://ftpmaster.internal/ubuntu/ utopic/main libbz2-dev amd64 1.0.6-5 [33.2 kB]
Get:221 http://ftpmaster.internal/ubuntu/ utopic/main libtcmalloc-minimal4 amd64 2.1-2ubuntu1 [104 kB]
Get:222 http://ftpmaster.internal/ubuntu/ utopic/main libgoogle-perftools4 amd64 2.1-2ubuntu1 [184 kB]
Get:223 http://ftpmaster.internal/ubuntu/ utopic/main libunwind8-dev amd64 1.1-2.2ubuntu3 [375 kB]
Get:224 http://ftpmaster.internal/ubuntu/ utopic/main libgoogle-perftools-dev amd64 2.1-2ubuntu1 [407 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Building format(s) --all.
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Setting up preview-latex-style (11.87-1ubuntu2) ...
Setting up gettext (0.18.3.2-1ubuntu1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2ubuntu1) ...
Setting up dh-apparmor (2.8.95~2430-0ubuntu5) ...
Setting up debhelper (9.20131227ubuntu1) ...
Setting up libtool (2.4.2-1.7ubuntu1) ...
Setting up dh-autoreconf (9) ...
Setting up icu-devtools (52.1-3) ...
Setting up libboost1.55-dev (1.55.0-1ubuntu2) ...
Setting up libboost-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost1.55-tools-dev (1.55.0-1ubuntu2) ...
Setting up libboost-tools-dev (1.55.0.1~ubuntu1) ...
Setting up libboost-atomic1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-atomic-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-chrono1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-chrono-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-context1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-context-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-coroutine1.55-dev (1.55.0-1ubuntu2) ...
Setting up libboost-coroutine-dev (1.55.0.1~ubuntu1) ...
Setting up libboost-serialization1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-date-time1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-date-time-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-exception1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-exception-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-system1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-filesystem1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-filesystem-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-test1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-graph1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-graph-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-graph-parallel1.55-dev (1.55.0-1ubuntu2) ...
Setting up libboost-graph-parallel-dev (1.55.0.1~ubuntu1) ...
Setting up libicu-dev:amd64 (52.1-3) ...
Setting up libboost-regex1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-iostreams1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-iostreams-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-locale1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-locale-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-log1.55.0 (1.55.0-1ubuntu2) ...
Setting up libboost-thread1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-log1.55-dev (1.55.0-1ubuntu2) ...
Setting up libboost-log-dev (1.55.0.1~ubuntu1) ...
Setting up libboost-math1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-math-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libibverbs-dev (1.1.7-1ubuntu1) ...
Setting up libxml2-dev:amd64 (2.9.1+dfsg1-3ubuntu4) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1) ...
Setting up libpci-dev (1:3.2.1-1ubuntu5) ...
Setting up libhwloc-dev:amd64 (1.8-1ubuntu1) ...
Setting up libopenmpi-dev (1.6.5-8) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.0.2ubuntu1) ...
Setting up libboost-mpi1.55-dev (1.55.0-1ubuntu2) ...
Setting up libboost-mpi-dev (1.55.0.1~ubuntu1) ...
Setting up libboost-mpi-python1.55-dev (1.55.0-1ubuntu2) ...
Setting up libboost-mpi-python-dev (1.55.0.1~ubuntu1) ...
Setting up libboost-program-options1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-program-options-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libpython-dev:amd64 (2.7.5-5ubuntu3) ...
Setting up python2.7-dev (2.7.6-8) ...
Setting up python-dev (2.7.5-5ubuntu3) ...
Setting up libboost-python1.55-dev (1.55.0-1ubuntu2) ...
Setting up libboost-python-dev (1.55.0.1~ubuntu1) ...
Setting up libboost-random1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-random-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-regex-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-serialization-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-signals1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-signals-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-system-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-test-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-thread-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-timer1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-timer-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-wave1.55-dev:amd64 (1.55.0-1ubuntu2) ...
Setting up libboost-wave-dev:amd64 (1.55.0.1~ubuntu1) ...
Setting up libboost-all-dev (1.55.0.1~ubuntu1) ...
Setting up libbz2-dev:amd64 (1.0.6-5) ...
Setting up libtcmalloc-minimal4 (2.1-2ubuntu1) ...
Setting up libgoogle-perftools4 (2.1-2ubuntu1) ...
Setting up libunwind8-dev (1.1-2.2ubuntu3) ...
Setting up libgoogle-perftools-dev (2.1-2ubuntu1) ...
Processing triggers for sgml-base (1.26+nmu4ubuntu1) ...
Setting up docbook-xsl (1.78.1+dfsg-1) ...
Setting up sgml-data (2.0.9-1) ...
Processing triggers for sgml-base (1.26+nmu4ubuntu1) ...
Setting up docbook-xml (4.5-7.2) ...
Processing triggers for tex-common (4.04) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-fonts-recommended (2013.20140408-1) ...
Setting up texlive-latex-base (2013.20140408-1) ...
Running mktexlsr. This may take some time... done.
Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf.
	This may take some time... done.
Processing triggers for tex-common (4.04) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-bibtex-extra (2013.20140408-1) ...
Setting up texlive-math-extra (2013.20140408-1) ...
Running mktexlsr. This may take some time... done.
Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-math-extra.cnf.
	This may take some time... done.
Setting up texlive-extra-utils (2013.20140408-1) ...
Setting up texlive-latex-recommended (2013.20140408-1) ...
Processing triggers for tex-common (4.04) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive (2013.20140408-1) ...
Setting up texlive-pictures (2013.20140408-1) ...
Processing triggers for tex-common (4.04) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2013.20140408-1) ...
Processing triggers for tex-common (4.04) ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Processing triggers for sgml-base (1.26+nmu4ubuntu1) ...
Setting up dblatex (0.3.4-3build1) ...
Processing triggers for libc-bin (2.19-0ubuntu6) ...
Checking correctness of source dependencies...
Toolchain package versions: libc6-dev_2.19-0ubuntu6 make_3.81-8.2ubuntu3 dpkg-dev_1.17.7ubuntu1 gcc-4.8_4.8.2-21ubuntu1 g++-4.8_4.8.2-21ubuntu1 binutils_2.24.51.20140425-0ubuntu2 libstdc++-4.8-dev_4.8.2-21ubuntu1 libstdc++6_4.9.0-1ubuntu3
------------------------------------------------------------------------------
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt
gpgv: Signature made Sat Apr 26 20:35:50 2014 UTC using DSA key ID 54B99890
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mira_4.0.2-1.dsc
dpkg-source: info: extracting mira in mira-4.0.2
dpkg-source: info: unpacking mira_4.0.2.orig.tar.bz2
dpkg-source: info: unpacking mira_4.0.2-1.debian.tar.xz
dpkg-buildpackage: source package mira
dpkg-buildpackage: source version 4.0.2-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build mira-4.0.2
dpkg-buildpackage: host architecture amd64
 /usr/bin/fakeroot debian/rules clean
dh clean 
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory `/build/buildd/mira-4.0.2'
( cd doc ; make clean ) || true
make[2]: Entering directory `/build/buildd/mira-4.0.2/doc'
cd .. && make  am--refresh
make[3]: Entering directory `/build/buildd/mira-4.0.2'
make[3]: *** No rule to make target `am--refresh'.  Stop.
make[3]: Leaving directory `/build/buildd/mira-4.0.2'
make[2]: *** [../config.status] Error 2
make[2]: Leaving directory `/build/buildd/mira-4.0.2/doc'
dh_auto_clean
find * -name Makefile -exec rm '{}' ';'
find * -name '*.xxd.H' -exec rm '{}' ';'
find * -name '*.par.H' -exec rm '{}' ';'
find * -name 'compileinfo.*' -exec rm '{}' ';'
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
   debian/rules override_dh_clean
make[1]: Entering directory `/build/buildd/mira-4.0.2'
dh_clean
	rm -f debian/mira-assembler.substvars
	rm -f debian/mira-assembler.*.debhelper
	rm -rf debian/mira-assembler/
	rm -f debian/mira-examples.substvars
	rm -f debian/mira-examples.*.debhelper
	rm -rf debian/mira-examples/
	rm -f debian/mira-doc.substvars
	rm -f debian/mira-doc.*.debhelper
	rm -rf debian/mira-doc/
	rm -f debian/*.debhelper.log
	rm -f debian/files
	find .  \( \( -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
	rm -f *-stamp
rm -rf lib
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
 debian/rules build-arch
dh build-arch 
   dh_testdir -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory `/build/buildd/mira-4.0.2'
mkdir lib
ln -s /usr/lib/libtcmalloc_minimal.so.4 lib/libtcmalloc_minimal.so
#dh_auto_configure
dh_auto_configure -- --with-boost-libdir=/usr/lib/x86_64-linux-gnu
	./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-boost-libdir=/usr/lib/x86_64-linux-gnu
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking whether to add --prefix as include path... yes

+++++++++++++++++++++++++++++++++++++
systemuname: Linux
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include
CXXFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib
+++++++++++++++++++++++++++++++++++++
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none

+++++++++++++++++++++++++++++++++++++
systemuname: Linux
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include
CXXFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib
+++++++++++++++++++++++++++++++++++++
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for int64_t... yes

+++++++++++++++++++++++++++++++++++++
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib
+++++++++++++++++++++++++++++++++++++
checking whether long has 64bit... yes
checking whether enabling 64bit compilation support... yes
checking build system type... x86_64-pc-linux-gnu
checking for compiler optimisation settings... -O3 -funroll-loops

+++++++++++++++++++++++++++++++++++++
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib
+++++++++++++++++++++++++++++++++++++
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether make sets $(MAKE)... (cached) yes
checking whether ln -s works... yes
checking for a sed that does not truncate output... (cached) /bin/sed
checking for flex... yes
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking for flex++... yes
checking for xxd... yes
checking for ANSI C header files... (cached) yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for C/C++ restrict keyword... __restrict
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking whether lstat correctly handles trailing slash... yes
checking whether stat accepts an empty string... no
checking for strftime... yes
checking for floor... no
checking for memset... yes
checking for pow... no
checking for sqrt... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for isblank... yes

+++++++++++++++++++++++++++++++++++++
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib
+++++++++++++++++++++++++++++++++++++
checking whether the compiler implements namespaces... yes
checking whether the compiler supports ISO C++ standard library... yes
checking whether the compiler supports Standard Template Library... yes
checking for boostlib >= 1.46.0... yes

+++++++++++++++++++++++++++++++++++++
 BOOST_CPPFLAGS:    -I/usr/include
 BOOST LDFLAGS:     -L/usr/lib/x86_64-linux-gnu
 ac_boost_path:     
 ac_boost_lib_path: /usr/lib/x86_64-linux-gnu
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib
+++++++++++++++++++++++++++++++++++++

+++++++++++++++++++++++++++++++++++++
 BOOST_CPPFLAGS:    -I/usr/include
 BOOST LDFLAGS:     -L/usr/lib/x86_64-linux-gnu
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/x86_64-linux-gnu
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib
+++++++++++++++++++++++++++++++++++++
checking whether the Boost::Thread library is available... yes
checking for exit in -lboost_thread... yes

+++++++++++++++++++++++++++++++++++++
 BOOST_CPPFLAGS:    -pthread -I/usr/include
 BOOST LDFLAGS:     -L/usr/lib/x86_64-linux-gnu
 ac_boost_path:     
 ac_boost_lib_path: /usr/lib/x86_64-linux-gnu
 BOOST_THREAD_LIB:  -lboost_thread
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/x86_64-linux-gnu
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib
+++++++++++++++++++++++++++++++++++++
+++++++++++++++++++++++++++++++++++++
 BOOST_CPPFLAGS:    -pthread -I/usr/include
 BOOST LDFLAGS:     -L/usr/lib/x86_64-linux-gnu
 ac_boost_path:     
 ac_boost_lib_path: /usr/lib/x86_64-linux-gnu
 BOOST_THREAD_LIB:  -lboost_thread

CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/x86_64-linux-gnu
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/x86_64-linux-gnu
LIBS now:  -lboost_thread
+++++++++++++++++++++++++++++++++++++
checking whether the Boost::Regex library is available... yes
checking for exit in -lboost_regex... yes
+++++++++++++++++++++++++++++++++++++
 BOOST_CPPFLAGS:    -pthread -I/usr/include
 BOOST LDFLAGS:     -L/usr/lib/x86_64-linux-gnu
 ac_boost_path:     
 ac_boost_lib_path: /usr/lib/x86_64-linux-gnu
 BOOST_REGEX_LIB:   -lboost_regex

CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/x86_64-linux-gnu
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include
LIBS now:  -lboost_thread -lboost_regex
+++++++++++++++++++++++++++++++++++++
checking whether the Boost::System library is available... yes
checking for exit in -lboost_system... yes
+++++++++++++++++++++++++++++++++++++
 BOOST_CPPFLAGS:    -pthread -I/usr/include
 BOOST LDFLAGS:     -L/usr/lib/x86_64-linux-gnu
 ac_boost_path:     
 ac_boost_lib_path: /usr/lib/x86_64-linux-gnu
 BOOST_SYSTEM_LIB:   -lboost_system

CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/x86_64-linux-gnu
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include
LIBS now:  -lboost_thread -lboost_regex -lboost_system
+++++++++++++++++++++++++++++++++++++
checking whether the Boost::Filesystem library is available... yes
checking for exit in -lboost_filesystem... yes
+++++++++++++++++++++++++++++++++++++
 BOOST_CPPFLAGS:    -pthread -I/usr/include
 BOOST LDFLAGS:     -L/usr/lib/x86_64-linux-gnu
 ac_boost_path:     
 ac_boost_lib_path: /usr/lib/x86_64-linux-gnu
 BOOST_FILESYSTEM_LIB:   -lboost_filesystem

CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/x86_64-linux-gnu
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include
LIBS now:  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem
+++++++++++++++++++++++++++++++++++++
checking whether the Boost::IOStreams library is available... yes
checking for exit in -lboost_iostreams... yes
+++++++++++++++++++++++++++++++++++++
 BOOST_CPPFLAGS:    -pthread -I/usr/include
 BOOST LDFLAGS:     -L/usr/lib/x86_64-linux-gnu
 ac_boost_path:     
 ac_boost_lib_path: /usr/lib/x86_64-linux-gnu
 BOOST_IOSTREAMS_LIB:   -lboost_iostreams

CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/x86_64-linux-gnu
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include
LIBS now:  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams
+++++++++++++++++++++++++++++++++++++
checking for clock_gettime in -lrt... yes
+++++++++++++++++++++++++++++++++++++
Need to specifically use rt library
LIBS now:  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt
+++++++++++++++++++++++++++++++++++++
checking for Expat XML Parser headers in /usr/include... found
checking for Expat XML Parser libraries... found
checking for Expat XML Parser... yes

+++++++++++++++++++++++++++++++++++++
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -I/usr/include
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib
LIBS now:  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat
+++++++++++++++++++++++++++++++++++++
checking if zlib is wanted... yes

+++++++++++++++++++++++++++++++++++++
CFLAGS now: -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -I/usr/include
CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include
LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib
LIBS now:  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2
+++++++++++++++++++++++++++++++++++++
checking for flex version compatible with MIRA... yes
checking for purify... no
checking whether linking with tcmalloc works... yes
checking whether mira should compile in public quiet mode... yes
checking whether mira should compile with bound tracking... yes
checking whether mira should compile with bug tracking... yes
checking whether mira should compile with extended bug tracking... no
checking whether mira should compile with function trace... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/stdinc/Makefile
config.status: creating src/debuggersupport/Makefile
config.status: creating src/memorc/Makefile
config.status: creating src/errorhandling/Makefile
config.status: creating src/util/Makefile
config.status: creating src/io/Makefile
config.status: creating src/mira/Makefile
config.status: creating src/caf/Makefile
config.status: creating src/support/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/progs/Makefile
config.status: creating doc/Makefile
config.status: creating doc/docbook/Makefile
config.status: creating distribution/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode

--------------------------------------------------------------------------------
                       Summary of MIRA configuration
--------------------------------------------------------------------------------

Building version ................................. 4.0.2_linux-gnu_x86_64_dynamic

We are building on ............................... Linux
CPU supports 64 bit? ............................. yes
Compiler ......................................... gcc
Compiler optimisation flags used ................. -O3 -funroll-loops
Do we compile in 64 bit? ......................... yes
Building completely static? ...................... no
BOOST expected to compile and link? .............. yes
Linking with TCmalloc library? ................... yes

Can MIRA be built on this system? ................ yes

Using CFLAGS   : -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -L/build/buildd/mira-4.0.2/lib  -I/usr/include -O3 -funroll-loops -I/usr/include -Werror=uninitialized -Werror=return-type 
Using CXXFLAGS : -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value
Using LDFLAGS  : -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib
Using LIBS     :  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -ltcmalloc_minimal

Looks good, we do not expect compilation problems.
--------------------------------------------------------------------------------

Type 'make' to make the binaries
and then 'make install' to install them.
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
   debian/rules override_dh_auto_build
make[1]: Entering directory `/build/buildd/mira-4.0.2'
dh_auto_build --parallel
	make -j8
make[2]: Entering directory `/build/buildd/mira-4.0.2'
make  all-recursive
make[3]: Entering directory `/build/buildd/mira-4.0.2'
Making all in src
make[4]: Entering directory `/build/buildd/mira-4.0.2/src'
make  all-recursive
make[5]: Entering directory `/build/buildd/mira-4.0.2/src'
Making all in debuggersupport
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/debuggersupport'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o dbgsupport.o dbgsupport.C
rm -f libmiradebuggersupport.a
ar cru libmiradebuggersupport.a dbgsupport.o 
ranlib libmiradebuggersupport.a
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/debuggersupport'
Making all in io
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/io'
Making .H out of .xxd mira_ft_set.xxd.H
Making .H out of .xxd gap4_ft_so_map.xxd.H
Reducing so.obo for smaller so.obo.xxd
Making .H out of .xxd so2xgap4map.xxd.H
Making .H out of .xxd oldso2so.xxd.H
Making .H out of .xxd so.obo.xxd.H
make  all-am
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/io'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o annotationmappings.o annotationmappings.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o exp.o exp.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o generalio.o generalio.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o fasta.o fasta.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o fastq-mira.o fastq-mira.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o phd.o phd.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o scf.o scf.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o ncbiinfoxml.o ncbiinfoxml.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o exp_flexer.o exp_flexer.cc
rm -f libmirafio.a
ar cru libmirafio.a annotationmappings.o exp.o generalio.o fasta.o fastq-mira.o phd.o scf.o ncbiinfoxml.o exp_flexer.o  
ranlib libmirafio.a
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/io'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/io'
Making all in stdinc
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/stdinc'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/stdinc'
Making all in errorhandling
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/errorhandling'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o errorhandling.o errorhandling.C
rm -f libmiraerrorhandling.a
ar cru libmiraerrorhandling.a errorhandling.o 
ranlib libmiraerrorhandling.a
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/errorhandling'
Making all in util
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/util'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o machineinfo.o machineinfo.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o fileanddisk.o fileanddisk.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o misc.o misc.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o dptools.o dptools.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o fmttext.o fmttext.C
rm -f libmirafmttext.a
ar cru libmirafmttext.a fmttext.o 
ranlib libmirafmttext.a
fileanddisk.C:691:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush(); }
 ^
fileanddisk.C:47:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
fileanddisk.C:796:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
fileanddisk.C:691:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush(); }
 ^
rm -f libmiradptools.a
ar cru libmiradptools.a dptools.o 
ranlib libmiradptools.a
rm -f libmirautil.a
ar cru libmirautil.a machineinfo.o fileanddisk.o misc.o 
ranlib libmirautil.a
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/util'
Making all in mira
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/mira'
Making .H out of .xxd adaptorsforclip.454.xxd.H
Making .H out of .xxd adaptorsforclip.solexa.xxd.H
Making .H out of .xxd adaptorsforclip.iontor.xxd.H
Making .H out of .xxd adaptorsregex.solexa.xxd.H
Making .H out of .xxd adaptorsregex.iontor.xxd.H
Making .H out of .xxd seqforfilter_phix174.solexa.xxd.H
make  all-am
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/mira'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o estassembly.o estassembly.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o assembly.o assembly.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o contig.o contig.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o read.o read.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o contig_analysis.o contig_analysis.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o ads.o ads.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o skim.o skim.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o adsfacts.o adsfacts.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o align.o align.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o assembly_info.o assembly_info.C
assembly.C:2066:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush(); }
 ^
assembly.C:61:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
assembly.C:3128:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
assembly.C:2066:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush(); }
 ^
assembly.C:3172:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush(); }
 ^
assembly.C:3128:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
assembly.C:3326:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
assembly.C:3172:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush(); }
 ^
assembly.C:3337:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush(); }
 ^
assembly.C:3326:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
assembly.C:3439:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
assembly.C:3337:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush(); }
 ^
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o assembly_io.o assembly_io.C
read.C: In member function 'void Read::dumpAsReadname(std::ostream&)':
read.C:914:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=]
       sprintf(buffer, "%x", this) ;
                                 ^
read.C: In member function 'void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)':
read.C:945:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=]
       sprintf(buffer, "%x", this) ;
                                 ^
read.C: In member function 'void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)':
read.C:1027:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=]
       sprintf(buffer, "%x", this) ;
                                 ^
read.C: In member function 'void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)':
read.C:1121:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=]
       sprintf(buffer, "%x", this) ;
                                 ^
read.C: In member function 'void Read::dumpAsCAF(std::ostream&)':
read.C:1193:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=]
       sprintf(buffer, "%x", this) ;
                                 ^
read.C: In member function 'void Read::dumpAsMAF(std::ostream&)':
read.C:1611:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=]
       sprintf(buffer, "%x", this) ;
                                 ^
read.C: In member function 'void Read::performHardTrim()':
read.C:6344:26: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     static char * nseq = "N";
                          ^
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o assembly_misc.o assembly_misc.C
assembly_misc.C:1503:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
assembly_misc.C:47:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
assembly_misc.C:1537:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
assembly_misc.C:1503:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o assembly_output.o assembly_output.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C
assembly_reduceskimhits.C:1088:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
assembly_reduceskimhits.C:854:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
assembly_reduceskimhits.C:1128:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
assembly_reduceskimhits.C:1088:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
assembly_reduceskimhits.C:2722:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
assembly_reduceskimhits.C:1128:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
assembly_reduceskimhits.C:2762:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
assembly_reduceskimhits.C:2722:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
assembly_reduceskimhits.C:2767:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
assembly_reduceskimhits.C:2762:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
assembly_reduceskimhits.C:2846:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
assembly_reduceskimhits.C:2767:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o assembly_swalign.o assembly_swalign.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o bloomfilter.o bloomfilter.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o contig_consensus.o contig_consensus.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o contig_covanalysis.o contig_covanalysis.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o contig_edit.o contig_edit.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o contig_featureinfo.o contig_featureinfo.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o contig_output.o contig_output.C
contig_featureinfo.C:501:0: warning: "CEBUGF2" redefined [enabled by default]
 #define CEBUGF2
 ^
contig_featureinfo.C:462:0: note: this is the location of the previous definition
 #define CEBUGF2(bla)
 ^
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o contig_pairconsistency.o contig_pairconsistency.C
contig_pairconsistency.C:312:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
contig_pairconsistency.C:33:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
contig_pairconsistency.C:314:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
contig_pairconsistency.C:312:0: note: this is the location of the previous definition
 #define CEBUG(bla)
 ^
contig_pairconsistency.C:398:0: warning: "CEBUG" redefined [enabled by default]
 #define CEBUG(bla)
 ^
contig_pairconsistency.C:314:0: note: this is the location of the previous definition
 #define CEBUG(bla)   {cout << bla; cout.flush();}
 ^
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o dataprocessing.o dataprocessing.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o dynamic.o dynamic.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o gbf_parse.o gbf_parse.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o gff_parse.o gff_parse.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o gff_save.o gff_save.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o hashstats.o hashstats.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o maf_parse.o maf_parse.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o manifest.o manifest.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o multitag.o multitag.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o parameters_flexer.o parameters_flexer.cc
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o parameters.o parameters.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o pcrcontainer.o pcrcontainer.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o ppathfinder.o ppathfinder.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o preventinitfiasco.o preventinitfiasco.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o readgrouplib.o readgrouplib.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o readpool.o readpool.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o sam_collect.o sam_collect.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o scaffolder.o scaffolder.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o seqtohash.o seqtohash.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o skim_farc.o skim_farc.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o skim_lowbph.o skim_lowbph.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o warnings.o warnings.C
rm -f libmiraestass.a
ar cru libmiraestass.a estassembly.o 
ranlib libmiraestass.a
rm -f libmira.a
ar cru libmira.a  assembly.o contig.o read.o contig_analysis.o ads.o skim.o adsfacts.o align.o assembly_info.o assembly_io.o assembly_misc.o assembly_output.o assembly_reduceskimhits.o assembly_swalign.o bloomfilter.o contig_consensus.o contig_covanalysis.o contig_edit.o contig_featureinfo.o contig_output.o contig_pairconsistency.o dataprocessing.o dynamic.o gbf_parse.o gff_parse.o gff_save.o hashstats.o maf_parse.o manifest.o multitag.o parameters_flexer.o parameters.o pcrcontainer.o ppathfinder.o preventinitfiasco.o readgrouplib.o readpool.o sam_collect.o scaffolder.o seqtohash.o skim_farc.o skim_lowbph.o warnings.o  
ranlib libmira.a
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/mira'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/mira'
Making all in caf
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/caf'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o caf.o caf.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o caf_flexer.o caf_flexer.cc
rm -f libmiracaf.a
ar cru libmiracaf.a caf.o caf_flexer.o 
ranlib libmiracaf.a
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/caf'
Making all in memorc
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/memorc'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o memorc.o memorc.C
memorc.C: In static member function 'static void MemORC::statistics()':
memorc.C:150:61: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=]
   printf("Current alloc counter  : %llu\n", MOC_alloccounter);
                                                             ^
memorc.C:151:64: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=]
   printf("Total checks performed : %llu\n", MOC_checksperformed);
                                                                ^
memorc.C:152:65: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::map<void*, MemORC::memblockinfo_t>::size_type {aka long unsigned int}' [-Wformat=]
   printf("Num. memory blocks     : %llu\n", MOC_memblocks.size());
                                                                 ^
memorc.C:153:65: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::map<void*, MemORC::memblockinfo_t>::size_type {aka long unsigned int}' [-Wformat=]
   printf("Num. active hot blocks : %llu\n", MOC_hotblocks.size());
                                                                 ^
memorc.C:154:72: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::vector<long unsigned int>::size_type {aka long unsigned int}' [-Wformat=]
   printf("Num. pending hot blocks: %llu\n", MOC_hotaidsrequested.size());
                                                                        ^
memorc.C:155:60: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=]
   printf("Total mem reqested     : %llu\n", MOC_reqmemalloc);
                                                            ^
memorc.C:156:90: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=]
   printf("Total mem allocated    : %llu (including pads and fences)\n", MOC_totalmemalloc);
                                                                                          ^
memorc.C: In static member function 'static void* MemORC::newMemBlock(size_t)':
memorc.C:222:116: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=]
       printf("Used malloc()\nTried to allocate %llu byte.\nSorry, memory allocation failed. Bailing out.\n", totaln);
                                                                                                                    ^
memorc.C: In static member function 'static void MemORC::deleteMemBlock(void*)':
memorc.C:308:112: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=]
  printf("Nearest memblock above (%d):\t",reinterpret_cast<uint64>(mbI->first)-reinterpret_cast<uint64>(usraddr));
                                                                                                                ^
memorc.C:315:113: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=]
  printf("Nearest memblock below (-%d):\t",reinterpret_cast<uint64>(usraddr)-reinterpret_cast<uint64>(mbI->first));
                                                                                                                 ^
memorc.C: In static member function 'static bool MemORC::checkMemBlock(std::map<void*, MemORC::memblockinfo_t>::iterator)':
memorc.C:427:134: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=]
  printf("check: lower fence .0 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32),MOC_clowfencemagic[0], *fencecptr);
                                                                                                                                      ^
memorc.C:430:136: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=]
  printf("check: lower fence .1 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+1,MOC_clowfencemagic[1], *fencecptr);
                                                                                                                                        ^
memorc.C:433:136: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=]
  printf("check: lower fence .2 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+2,MOC_clowfencemagic[2], *fencecptr);
                                                                                                                                        ^
memorc.C:436:136: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=]
  printf("check: lower fence .3 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+3,MOC_clowfencemagic[3], *fencecptr);
                                                                                                                                        ^
memorc.C:497:44: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=]
     printf("Size: %llu\n", mbI->second.size);
                                            ^
memorc.C:498:50: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=]
     printf("AllocID: %llu\n", mbI->second.allocid);
                                                  ^
memorc.C: In static member function 'static void MemORC::printMemBlockInfo(std::map<void*, MemORC::memblockinfo_t>::iterator)':
memorc.C:555:50: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'size_t {aka long unsigned int}' [-Wformat=]
   printf("%p\t%llu\t",mbI->first,mbI->second.size);
                                                  ^
memorc.C:561:40: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=]
   printf("\t%llu\n",mbI->second.allocid);
                                        ^
rm -f libmemorc.a
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o main.o main.C
ar cru libmemorc.a memorc.o 
ranlib libmemorc.a
/bin/bash ../../libtool --tag=CXX   --mode=link g++  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o main main.o  -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -ltcmalloc_minimal
libtool: link: g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o main main.o  -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -ltcmalloc_minimal -pthread
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/memorc'
Making all in modules
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/modules'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o mod_bait.o mod_bait.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o mod_dbgreplay.o mod_dbgreplay.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o mod_mira.o mod_mira.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o mod_convert.o mod_convert.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o mod_memestim.o mod_memestim.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o mod_tagsnp.o mod_tagsnp.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2  -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o misc.o misc.C
mod_mira.C: In function 'void miraMain_launchWrapped(int, char**)':
mod_mira.C:401:21: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result]
       chdir("../..");
                     ^
mod_mira.C:426:21: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result]
       chdir("../..");
                     ^
mod_convert.C: In static member function 'static void ConvPro::saveContigList_helper(std::list<Contig>&, ReadPool&)':
mod_convert.C:708:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:712:11: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".html");
           ^
mod_convert.C:722:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:726:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:733:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:737:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:747:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:751:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:762:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:766:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:770:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:774:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:778:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:781:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:784:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:787:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:804:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:809:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:820:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:824:6: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    "");
      ^
mod_convert.C:843:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:847:6: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    "");
      ^
mod_convert.C:874:22: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        &clist.front());
                      ^
mod_convert.C:879:15: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        nullptr);
               ^
mod_convert.C:915:22: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        &clist.front());
                      ^
mod_convert.C:920:15: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
        nullptr);
               ^
mod_convert.C:938:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:942:11: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".html");
           ^
mod_convert.C:952:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:956:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".txt");
          ^
mod_convert.C:966:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:970:6: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    "");
      ^
mod_convert.C:980:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:984:6: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    "");
      ^
mod_convert.C:1001:20: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
      &clist.front());
                    ^
mod_convert.C:1009:8: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
      "");
        ^
mod_convert.C:1023:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:1027:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".ace");
          ^
mod_convert.C:1037:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:1041:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".tcs");
          ^
mod_convert.C:1051:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:1055:10: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    ".wig");
          ^
mod_convert.C:1065:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    &clist.front());
                  ^
mod_convert.C:1069:20: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
    "_gccontent.wig");
                    ^
mod_convert.C: In static member function 'static uint32 ConvPro::openOFSlist(Contig*, std::list<std::basic_ofstream<char>*>&)':
mod_convert.C:1318:108: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       openOFStream(*ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fasta",optcontig),ios::out);
                                                                                                            ^
mod_convert.C:1321:113: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       openOFStream(*ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fasta.qual",optcontig),ios::out);
                                                                                                                 ^
mod_convert.C:1324:108: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       openOFStream(*ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fasta",optcontig),ios::out);
                                                                                                            ^
mod_convert.C:1327:113: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       openOFStream(*ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fasta.qual",optcontig),ios::out);
                                                                                                                 ^
mod_convert.C:1330:108: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       openOFStream(*ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fastq",optcontig),ios::out);
                                                                                                            ^
mod_convert.C:1333:106: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       openOFStream(*ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".caf",optcontig),ios::out);
                                                                                                          ^
mod_convert.C:1336:106: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       openOFStream(*ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".maf",optcontig),ios::out);
                                                                                                          ^
mod_convert.C:1340:106: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       openOFStream(*ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".sam",optcontig),ios::out);
                                                                                                          ^
mod_convert.C:1344:98: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       CP_gffsave.open(createFileNameFromBasePostfixContigAndRead(CP_outbasename,".gff3",optcontig));
                                                                                                  ^
mod_convert.C: In member function 'int ConvPro::mainConvPro(int, char**)':
mod_convert.C:1733:96: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  openOFStream(*CP_ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fasta"),ios::out);
                                                                                                ^
mod_convert.C:1738:101: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  openOFStream(*CP_ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fasta.qual"),ios::out);
                                                                                                     ^
mod_convert.C:1742:96: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  openOFStream(*CP_ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fasta"),ios::out);
                                                                                                ^
mod_convert.C:1747:101: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  openOFStream(*CP_ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fasta.qual"),ios::out);
                                                                                                     ^
mod_convert.C:1751:96: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  openOFStream(*CP_ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".fastq"),ios::out);
                                                                                                ^
mod_convert.C:1755:94: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  openOFStream(*CP_ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".caf"),ios::out);
                                                                                              ^
mod_convert.C:1759:94: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  openOFStream(*CP_ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".maf"),ios::out);
                                                                                              ^
mod_convert.C:1764:94: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  openOFStream(*CP_ofs.back(),createFileNameFromBasePostfixContigAndRead(CP_outbasename,".sam"),ios::out);
                                                                                              ^
mod_convert.C:1768:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
  CP_gffsave.open(createFileNameFromBasePostfixContigAndRead(CP_outbasename,"").c_str());
                                                                              ^
rm -f libmiramodules.a
ar cru libmiramodules.a mod_bait.o mod_dbgreplay.o mod_mira.o mod_convert.o mod_memestim.o mod_tagsnp.o misc.o 
ranlib libmiramodules.a
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/modules'
Making all in progs
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/progs'
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o quirks.o quirks.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o miratest.o miratest.C
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o miramer.o miramer.C
Making .H out of .xxd compileinfo.itxt
g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I.  -I../../src  -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -c -o mira.o mira.C
/bin/bash ../../libtool --tag=CXX   --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf  -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o miratest miratest.o -lmiramodules -lmiradebuggersupport  -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -ltcmalloc_minimal
libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o miratest miratest.o  -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -ltcmalloc_minimal -pthread
/bin/bash ../../libtool --tag=CXX   --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf  -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o mira mira.o quirks.o -lmiramodules -lmiradebuggersupport  -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -ltcmalloc_minimal
libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o mira mira.o quirks.o  -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -ltcmalloc_minimal -pthread
/bin/bash ../../libtool --tag=CXX   --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security  -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf  -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o miramer miramer.o -lmiramodules -lmiradebuggersupport  -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext  -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -ltcmalloc_minimal
libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -std=c++0x -Werror=unused-value -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o miramer miramer.o  -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -ltcmalloc_minimal -pthread
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/progs'
Making all in support
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/support'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/support'
Making all in scripts
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/scripts'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/scripts'
make[6]: Entering directory `/build/buildd/mira-4.0.2/src'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[5]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[4]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[4]: Entering directory `/build/buildd/mira-4.0.2'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/build/buildd/mira-4.0.2'
make[3]: Leaving directory `/build/buildd/mira-4.0.2'
make[2]: Leaving directory `/build/buildd/mira-4.0.2'
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
   debian/rules override_dh_auto_test
make[1]: Entering directory `/build/buildd/mira-4.0.2'
make check
make[2]: Entering directory `/build/buildd/mira-4.0.2'
make  check-recursive
make[3]: Entering directory `/build/buildd/mira-4.0.2'
Making check in src
make[4]: Entering directory `/build/buildd/mira-4.0.2/src'
make  check-recursive
make[5]: Entering directory `/build/buildd/mira-4.0.2/src'
Making check in debuggersupport
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/debuggersupport'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/debuggersupport'
Making check in io
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/io'
make  check-am
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/io'
make[7]: Nothing to be done for `check-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/io'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/io'
Making check in stdinc
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/stdinc'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/stdinc'
Making check in errorhandling
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/errorhandling'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/errorhandling'
Making check in util
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/util'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/util'
Making check in mira
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/mira'
make  check-am
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/mira'
make[7]: Nothing to be done for `check-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/mira'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/mira'
Making check in caf
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/caf'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/caf'
Making check in memorc
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/memorc'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/memorc'
Making check in modules
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/modules'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/modules'
Making check in progs
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/progs'
Making .H out of .xxd compileinfo.itxt
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/progs'
Making check in support
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/support'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/support'
Making check in scripts
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/scripts'
make[6]: Nothing to be done for `check'.
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/scripts'
make[6]: Entering directory `/build/buildd/mira-4.0.2/src'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[5]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[4]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[4]: Entering directory `/build/buildd/mira-4.0.2'
make[4]: Nothing to be done for `check-am'.
make[4]: Leaving directory `/build/buildd/mira-4.0.2'
make[3]: Leaving directory `/build/buildd/mira-4.0.2'
make[2]: Leaving directory `/build/buildd/mira-4.0.2'
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
 /usr/bin/fakeroot debian/rules binary-arch
dh binary-arch 
   dh_testroot -a
   dh_prep -a
	rm -f debian/mira-assembler.substvars
	rm -f debian/mira-assembler.*.debhelper
	rm -rf debian/mira-assembler/
   dh_installdirs -a
	install -d debian/mira-assembler
	install -d debian/mira-assembler/usr/bin
   debian/rules override_dh_auto_install
make[1]: Entering directory `/build/buildd/mira-4.0.2'
make install DESTDIR=/build/buildd/mira-4.0.2/debian/mira-assembler
make[2]: Entering directory `/build/buildd/mira-4.0.2'
make  install-recursive
make[3]: Entering directory `/build/buildd/mira-4.0.2'
Making install in src
make[4]: Entering directory `/build/buildd/mira-4.0.2/src'
make  install-recursive
make[5]: Entering directory `/build/buildd/mira-4.0.2/src'
Making install in debuggersupport
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/debuggersupport'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/debuggersupport'
make[7]: Nothing to be done for `install-exec-am'.
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/debuggersupport'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/debuggersupport'
Making install in io
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/io'
make  install-am
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/io'
make[8]: Entering directory `/build/buildd/mira-4.0.2/src/io'
make[8]: Nothing to be done for `install-exec-am'.
make[8]: Nothing to be done for `install-data-am'.
make[8]: Leaving directory `/build/buildd/mira-4.0.2/src/io'
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/io'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/io'
Making install in stdinc
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/stdinc'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/stdinc'
make[7]: Nothing to be done for `install-exec-am'.
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/stdinc'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/stdinc'
Making install in errorhandling
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/errorhandling'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/errorhandling'
make[7]: Nothing to be done for `install-exec-am'.
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/errorhandling'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/errorhandling'
Making install in util
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/util'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/util'
make[7]: Nothing to be done for `install-exec-am'.
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/util'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/util'
Making install in mira
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/mira'
make  install-am
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/mira'
make[8]: Entering directory `/build/buildd/mira-4.0.2/src/mira'
make[8]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/mira" || /bin/mkdir -p "/build/buildd/mira-4.0.2/debian/mira-assembler/usr/share/mira"
 /usr/bin/install -c -m 644 demoparam.prm '/build/buildd/mira-4.0.2/debian/mira-assembler/usr/share/mira'
make[8]: Leaving directory `/build/buildd/mira-4.0.2/src/mira'
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/mira'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/mira'
Making install in caf
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/caf'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/caf'
make[7]: Nothing to be done for `install-exec-am'.
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/caf'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/caf'
Making install in memorc
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/memorc'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/memorc'
make[7]: Nothing to be done for `install-exec-am'.
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/memorc'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/memorc'
Making install in modules
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/modules'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/modules'
make[7]: Nothing to be done for `install-exec-am'.
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/modules'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/modules'
Making install in progs
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/progs'
Making .H out of .xxd compileinfo.itxt
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/progs'
Making .H out of .xxd compileinfo.itxt
test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/mira-4.0.2/debian/mira-assembler/usr/bin"
  /bin/bash ../../libtool   --mode=install /usr/bin/install -c mira '/build/buildd/mira-4.0.2/debian/mira-assembler/usr/bin'
libtool: install: /usr/bin/install -c mira /build/buildd/mira-4.0.2/debian/mira-assembler/usr/bin/mira
make  install-exec-hook
make[8]: Entering directory `/build/buildd/mira-4.0.2/src/progs'
cd /build/buildd/mira-4.0.2/debian/mira-assembler/usr/bin && \
	rm -f miramem && \
	ln -s mira miramem && \
	rm -f mirabait && \
	ln -s mira mirabait &&\
	rm -f miraconvert && \
	ln -s mira miraconvert
make[8]: Leaving directory `/build/buildd/mira-4.0.2/src/progs'
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/progs'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/progs'
Making install in support
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/support'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/support'
make[7]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/mira/support_3rdparty_tools" || /bin/mkdir -p "/build/buildd/mira-4.0.2/debian/mira-assembler/usr/share/mira/support_3rdparty_tools"
 /usr/bin/install -c -m 644 consedrc.13.0 consedtaglib.txt GTAGDB README '/build/buildd/mira-4.0.2/debian/mira-assembler/usr/share/mira/support_3rdparty_tools'
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/support'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/support'
Making install in scripts
make[6]: Entering directory `/build/buildd/mira-4.0.2/src/scripts'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src/scripts'
make  install-exec-hook
make[8]: Entering directory `/build/buildd/mira-4.0.2/src/scripts'
rm -f /build/buildd/mira-4.0.2/debian/mira-assembler/usr/bin/fixACE4consed.tcl && \
	cp fixACE4consed.tcl /build/buildd/mira-4.0.2/debian/mira-assembler/usr/bin
rm -f /build/buildd/mira-4.0.2/debian/mira-assembler/usr/bin/fasta2frag.tcl && \
	cp fasta2frag.tcl /build/buildd/mira-4.0.2/debian/mira-assembler/usr/bin
make[8]: Leaving directory `/build/buildd/mira-4.0.2/src/scripts'
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src/scripts'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src/scripts'
make[6]: Entering directory `/build/buildd/mira-4.0.2/src'
make[7]: Entering directory `/build/buildd/mira-4.0.2/src'
make[7]: Nothing to be done for `install-exec-am'.
make[7]: Nothing to be done for `install-data-am'.
make[7]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[6]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[5]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[4]: Leaving directory `/build/buildd/mira-4.0.2/src'
make[4]: Entering directory `/build/buildd/mira-4.0.2'
make[5]: Entering directory `/build/buildd/mira-4.0.2'
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
make[5]: Leaving directory `/build/buildd/mira-4.0.2'
make[4]: Leaving directory `/build/buildd/mira-4.0.2'
make[3]: Leaving directory `/build/buildd/mira-4.0.2'
make[2]: Leaving directory `/build/buildd/mira-4.0.2'
#There is no installation target for the docs
mkdir -p /build/buildd/mira-4.0.2/debian/tmp/usr/share/doc/mira-assembler
cp -r -t /build/buildd/mira-4.0.2/debian/tmp/usr/share/doc/mira-assembler doc/docbook/bookfigures doc/docbook/images \
	    doc/docbook/doccss doc/docbook/DefinitiveGuideToMIRA.html || true
cp: cannot stat 'doc/docbook/DefinitiveGuideToMIRA.html': No such file or directory
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
   debian/rules override_dh_install
make[1]: Entering directory `/build/buildd/mira-4.0.2'
dh_install
if [ -d debian/mira-assembler ] ; then \
	  for f in $(ls debian/mira-assembler/usr/bin/*.tcl) ; do mv "$f" "${f%.tcl}"; done \
	fi
# In version 3.9.17 executing miraSearchESTSNPs just leads to "De-activated atm, sorry."
# If this is the case, it should not be installed
for deactivated in miraSearchESTSNPs miraclip ; do \
	    if [ -e debian/mira-assembler/usr/bin/${deactivated} ] ; then \
	        if [ "`debian/mira-assembler/usr/bin/${deactivated} 2>&1 | tee`" = "De-activated atm, sorry." ] ; then rm -f debian/mira-assembler/usr/bin/${deactivated} ; fi \
	    else \
	        echo "debian/mira-assembler/usr/bin/${deactivated} does not exist" ; \
	    fi ; \
	done
debian/mira-assembler/usr/bin/miraSearchESTSNPs does not exist
debian/mira-assembler/usr/bin/miraclip does not exist
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
   dh_installdocs -a
	install -g 0 -o 0 -d debian/mira-assembler/usr/share/doc/mira-assembler
	cp -a NEWS debian/mira-assembler/usr/share/doc/mira-assembler
	cp -a README debian/mira-assembler/usr/share/doc/mira-assembler
	cp -a THANKS debian/mira-assembler/usr/share/doc/mira-assembler
	cp -a HELP_WANTED debian/mira-assembler/usr/share/doc/mira-assembler
	chown -R 0:0 debian/mira-assembler/usr/share/doc
	chmod -R go=rX debian/mira-assembler/usr/share/doc
	chmod -R u\+rw debian/mira-assembler/usr/share/doc
	install -g 0 -o 0 -m 644 -p debian/copyright debian/mira-assembler/usr/share/doc/mira-assembler/copyright
   dh_installchangelogs -a
	install -o 0 -g 0 -p -m644 debian/changelog debian/mira-assembler/usr/share/doc/mira-assembler/changelog.Debian
   debian/rules override_dh_installexamples
make[1]: Entering directory `/build/buildd/mira-4.0.2'
dh_installexamples
# avoid duplicated files
if cmp /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual >/dev/null ; then \
	    echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual and create symling" ; \
	    rm -f /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual ; \
	    ln -s cjejuni_demo_in.fasta.qual.gz /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual.gz ; \
	fi
cmp: /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual: No such file or directory
if cmp /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta >/dev/null ; then \
	    echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta and create symling" ; \
	    rm -f /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta ; \
	    ln -s cjejuni_demo_in.fasta.gz /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.gz ; \
	fi
cmp: /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta: No such file or directory
if cmp /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf >/dev/null ; then \
	    echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf and create symling" ; \
	    rm -f /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf ; \
	    ln -s cjejuni_NCTC11168_first40kb.gbf.gz /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf.gz ; \
	fi
cmp: /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf: No such file or directory
if cmp /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml >/dev/null ; then \
	    echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml and create symling" ; \
	    rm -f /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml ; \
	    ln -s cjejuni_demo_traceinfo_in.xml.gz /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml.gz ; \
	fi
cmp: /build/buildd/mira-4.0.2/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml: No such file or directory
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
   dh_installman -a
	install -d debian/mira-assembler/usr/share/man/man1/
	install -p -m644 debian/convert_project.1 debian/mira-assembler/usr/share/man/man1/convert_project.1
	install -p -m644 debian/fasta2frag.1 debian/mira-assembler/usr/share/man/man1/fasta2frag.1
	install -p -m644 debian/fastaselect.1 debian/mira-assembler/usr/share/man/man1/fastaselect.1
	install -p -m644 debian/fastatool.1 debian/mira-assembler/usr/share/man/man1/fastatool.1
	install -p -m644 debian/fastqselect.1 debian/mira-assembler/usr/share/man/man1/fastqselect.1
	install -p -m644 debian/fixACE4consed.1 debian/mira-assembler/usr/share/man/man1/fixACE4consed.1
	install -p -m644 debian/mira.1 debian/mira-assembler/usr/share/man/man1/mira.1
	install -p -m644 debian/mirabait.1 debian/mira-assembler/usr/share/man/man1/mirabait.1
	install -p -m644 debian/miradiff.1 debian/mira-assembler/usr/share/man/man1/miradiff.1
	install -p -m644 debian/miramem.1 debian/mira-assembler/usr/share/man/man1/miramem.1
	install -p -m644 debian/miramer.1 debian/mira-assembler/usr/share/man/man1/miramer.1
	install -p -m644 debian/miraSearchESTSNPs.1 debian/mira-assembler/usr/share/man/man1/miraSearchESTSNPs.1
	install -p -m644 debian/scftool.1 debian/mira-assembler/usr/share/man/man1/scftool.1
	man --recode UTF-8 ./convert_project\.1 > convert_project\.1\.new
	chmod 644 convert_project.1.new
	mv -f convert_project.1.new convert_project.1
	man --recode UTF-8 ./fasta2frag\.1 > fasta2frag\.1\.new
	chmod 644 fasta2frag.1.new
	mv -f fasta2frag.1.new fasta2frag.1
	man --recode UTF-8 ./miraSearchESTSNPs\.1 > miraSearchESTSNPs\.1\.new
	chmod 644 miraSearchESTSNPs.1.new
	mv -f miraSearchESTSNPs.1.new miraSearchESTSNPs.1
	man --recode UTF-8 ./miramer\.1 > miramer\.1\.new
	chmod 644 miramer.1.new
	mv -f miramer.1.new miramer.1
	man --recode UTF-8 ./miramem\.1 > miramem\.1\.new
	chmod 644 miramem.1.new
	mv -f miramem.1.new miramem.1
	man --recode UTF-8 ./fastatool\.1 > fastatool\.1\.new
	chmod 644 fastatool.1.new
	mv -f fastatool.1.new fastatool.1
	man --recode UTF-8 ./miradiff\.1 > miradiff\.1\.new
	chmod 644 miradiff.1.new
	mv -f miradiff.1.new miradiff.1
	man --recode UTF-8 ./mirabait\.1 > mirabait\.1\.new
	chmod 644 mirabait.1.new
	mv -f mirabait.1.new mirabait.1
	man --recode UTF-8 ./fastqselect\.1 > fastqselect\.1\.new
	chmod 644 fastqselect.1.new
	mv -f fastqselect.1.new fastqselect.1
	man --recode UTF-8 ./fastaselect\.1 > fastaselect\.1\.new
	chmod 644 fastaselect.1.new
	mv -f fastaselect.1.new fastaselect.1
	man --recode UTF-8 ./mira\.1 > mira\.1\.new
	chmod 644 mira.1.new
	mv -f mira.1.new mira.1
	man --recode UTF-8 ./fixACE4consed\.1 > fixACE4consed\.1\.new
	chmod 644 fixACE4consed.1.new
	mv -f fixACE4consed.1.new fixACE4consed.1
	man --recode UTF-8 ./scftool\.1 > scftool\.1\.new
	chmod 644 scftool.1.new
	mv -f scftool.1.new scftool.1
   dh_lintian -a
	install -d debian/mira-assembler/usr/share/lintian/overrides
	install -p -m644 debian/mira-assembler.lintian-overrides debian/mira-assembler/usr/share/lintian/overrides/mira-assembler
   dh_perl -a
   dh_link -a
	rm -f debian/mira-assembler/usr/bin/miraconvert
	ln -sf mira debian/mira-assembler/usr/bin/miraconvert
	rm -f debian/mira-assembler/usr/bin/mirabait
	ln -sf mira debian/mira-assembler/usr/bin/mirabait
	rm -f debian/mira-assembler/usr/bin/miramem
	ln -sf mira debian/mira-assembler/usr/bin/miramem
   dh_compress -a
	cd debian/mira-assembler
	chmod a-x usr/share/man/man1/convert_project.1 usr/share/man/man1/fasta2frag.1 usr/share/man/man1/miraSearchESTSNPs.1 usr/share/man/man1/miramer.1 usr/share/man/man1/miramem.1 usr/share/man/man1/fastatool.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/fastqselect.1 usr/share/man/man1/fastaselect.1 usr/share/man/man1/mira.1 usr/share/man/man1/fixACE4consed.1 usr/share/man/man1/scftool.1 usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog.Debian
	gzip -9nf usr/share/man/man1/convert_project.1 usr/share/man/man1/fasta2frag.1 usr/share/man/man1/miraSearchESTSNPs.1 usr/share/man/man1/miramer.1 usr/share/man/man1/miramem.1 usr/share/man/man1/fastatool.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/fastqselect.1 usr/share/man/man1/fastaselect.1 usr/share/man/man1/mira.1 usr/share/man/man1/fixACE4consed.1 usr/share/man/man1/scftool.1 usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog.Debian
	cd '/build/buildd/mira-4.0.2'
   dh_fixperms -a
	find debian/mira-assembler  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/mira-assembler ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/mira-assembler/usr/share/doc -type f  ! -regex 'debian/mira-assembler/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
	find debian/mira-assembler/usr/share/doc -type d  -print0 2>/dev/null | xargs -0r chmod 755
	find debian/mira-assembler/usr/share/man debian/mira-assembler/usr/man/ debian/mira-assembler/usr/X11*/man/ -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/mira-assembler -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/mira-assembler/usr/include -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/mira-assembler/usr/share/applications -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/mira-assembler -perm -5 -type f \( -name '*.cmxs' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/mira-assembler/usr/lib/perl5 debian/mira-assembler/usr/share/perl5 -type f -perm -5 -name '*.pm'  -print0 2>/dev/null | xargs -0r chmod a-X
	find debian/mira-assembler/usr/bin -type f  -print0 2>/dev/null | xargs -0r chmod a+x
	find debian/mira-assembler/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
	find debian/mira-assembler/usr/share/lintian/overrides -type f  -print0 2>/dev/null | xargs -0r chmod 644
   dh_strip -a
dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists
dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: mira-assembler 
dh_strip debug symbol extraction: packages to act on: mira-assembler 
dh_strip debug symbol extraction: ignored packages: 
Using buildid for compat level >= 9
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
/usr/bin/pkg_create_dbgsym: building ddeb package
dpkg-deb: building package `mira-assembler-dbgsym' in `../mira-assembler-dbgsym_4.0.2-1_amd64.ddeb'.
	strip --remove-section=.comment --remove-section=.note debian/mira-assembler/usr/bin/mira
   dh_makeshlibs -a
	rm -f debian/mira-assembler/DEBIAN/shlibs
   dh_shlibdeps -a
	install -o 0 -g 0 -d debian/mira-assembler/DEBIAN
	dpkg-shlibdeps -Tdebian/mira-assembler.substvars debian/mira-assembler/usr/bin/mira
   dh_installdeb -a
   dh_gencontrol -a
	echo misc:Depends= >> debian/mira-assembler.substvars
	dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -Pdebian/mira-assembler
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
	chmod 644 debian/mira-assembler/DEBIAN/control
	chown 0:0 debian/mira-assembler/DEBIAN/control
   dh_md5sums -a
	(cd debian/mira-assembler >/dev/null ; find . -type f  ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
	chmod 644 debian/mira-assembler/DEBIAN/md5sums
	chown 0:0 debian/mira-assembler/DEBIAN/md5sums
   debian/rules override_dh_builddeb
make[1]: Entering directory `/build/buildd/mira-4.0.2'
dh_builddeb -- -Z xz
	dpkg-deb -Z xz --build debian/mira-assembler ..
INFO: pkgstriptranslations version 121
pkgstriptranslations: processing mira-assembler (in debian/mira-assembler); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/mira-assembler/DEBIAN/control, package mira-assembler, directory debian/mira-assembler
pkgstripfiles: Truncating usr/share/doc/mira-assembler/changelog.Debian.gz to topmost ten records
pkgstripfiles: PNG optimization for package mira-assembler took 0 s
dpkg-deb: warning: 'debian/mira-assembler/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package `mira-assembler' in `../mira-assembler_4.0.2-1_amd64.deb'.
make[1]: Leaving directory `/build/buildd/mira-4.0.2'
 dpkg-genchanges -B -mUbuntu/amd64 Build Daemon <buildd@panlong.buildd> >../mira_4.0.2-1_amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build mira-4.0.2
dpkg-buildpackage: binary-only upload (no source included)
******************************************************************************
Build finished at 20140427-0550
Publishing debug debs.

chroot-autobuild/build/buildd/mira-assembler_4.0.2-1_amd64.deb:
 new debian package, version 2.0.
 size 1403548 bytes: control archive= 2483 bytes.
    2635 bytes,    48 lines      control              
    1965 bytes,    28 lines      md5sums              
 Package: mira-assembler
 Source: mira
 Version: 4.0.2-1
 Architecture: amd64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 4095
 Depends: libboost-filesystem1.55.0, libboost-regex1.55.0, libboost-system1.55.0, libboost-thread1.55.0, libc6 (>= 2.14), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.8), libtcmalloc-minimal4, zlib1g (>= 1:1.1.4)
 Suggests: mira-examples, mira-doc
 Section: science
 Priority: optional
 Homepage: http://chevreux.org/projects_mira.html
 Description: Whole Genome Shotgun and EST Sequence Assembler
  The mira genome fragment assembler is a specialised assembler for
  sequencing projects classified as 'hard' due to high number of similar
  repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
  specialised on reconstructing pristine mRNA transcripts while
  detecting and classifying single nucleotide polymorphisms (SNP)
  occuring in different variations thereof.
  .
  The assembler is routinely used for such various tasks as mutation
  detection in different cell types, similarity analysis of transcripts
  between organisms, and pristine assembly of sequences from various
  sources for oligo design in clinical microarray experiments.
  .
  The package provides the following executables:
  Binaries provided:
   * mira: for assembly of genome sequences
   * miramem: estimating memory needed to assemble projects. Realised through
     link to mira.
   * convert_project: for converting project file types into other types
   * caf2fasta, caf2gbf, caf2text, caf2html, gbf2caf and gbf2fasta are some
     frequently used file converters (realised through links to convert_project)
   * scftool: set of tools useful when working with SCF trace files
   * fastatool: set of tools useful when working with FASTA trace files
  .
  Scripts provided:
   * fasta2frag: fragmenting sequences into smaller, overlapping
     subsequences. Useful for simulating shotgun sequences. Can create
     subsequences in both directions (/default) and also paired-end sequences.
   * fastaselect: given a FASTA file (and possibly a FASTA quality file) and
     a file with names of reads, select the sequences from the input FASTA (and
     quality file) and writes them to an output FASTA
   * fastqselect: like fastaselect, only for FASTQ
   * fixACE4consed: Consed has a bug which incapacitates it from reading
     consensus tags in ACE files written by the MIRA assembler (and possibly
     other programs). This script massages an ACE file so that consed can read
     the consensus tags.

chroot-autobuild/build/buildd/mira-assembler_4.0.2-1_amd64.deb:
drwxr-xr-x root/root         0 2014-04-27 05:50 ./
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/doc/
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/doc/mira-assembler/
-rw-r--r-- root/root      2690 2014-04-09 17:59 ./usr/share/doc/mira-assembler/README
-rw-r--r-- root/root       263 2014-04-09 17:59 ./usr/share/doc/mira-assembler/NEWS.gz
-rw-r--r-- root/root      3855 2014-04-09 17:59 ./usr/share/doc/mira-assembler/THANKS
-rw-r--r-- root/root      2004 2014-04-27 05:50 ./usr/share/doc/mira-assembler/changelog.Debian.gz
-rw-r--r-- root/root      1384 2014-04-09 17:59 ./usr/share/doc/mira-assembler/HELP_WANTED
-rw-r--r-- root/root      2400 2013-09-10 09:56 ./usr/share/doc/mira-assembler/copyright
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/lintian/
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       147 2013-12-28 12:45 ./usr/share/lintian/overrides/mira-assembler
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/mira/
-rw-r--r-- root/root     13225 2014-04-27 05:49 ./usr/share/mira/demoparam.prm
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/mira/support_3rdparty_tools/
-rw-r--r-- root/root       735 2014-04-27 05:49 ./usr/share/mira/support_3rdparty_tools/README
-rw-r--r-- root/root       762 2014-04-27 05:49 ./usr/share/mira/support_3rdparty_tools/consedtaglib.txt
-rw-r--r-- root/root        58 2014-04-27 05:49 ./usr/share/mira/support_3rdparty_tools/consedrc.13.0
-rw-r--r-- root/root      2571 2014-04-27 05:49 ./usr/share/mira/support_3rdparty_tools/GTAGDB
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/man/
drwxr-xr-x root/root         0 2014-04-27 05:49 ./usr/share/man/man1/
-rw-r--r-- root/root       880 2014-04-27 05:49 ./usr/share/man/man1/scftool.1.gz
-rw-r--r-- root/root      1084 2014-04-27 05:49 ./usr/share/man/man1/miraSearchESTSNPs.1.gz
-rw-r--r-- root/root       847 2014-04-27 05:49 ./usr/share/man/man1/fastaselect.1.gz
-rw-r--r-- root/root      1026 2014-04-27 05:49 ./usr/share/man/man1/mira.1.gz
-rw-r--r-- root/root       876 2014-04-27 05:49 ./usr/share/man/man1/mirabait.1.gz
-rw-r--r-- root/root       681 2014-04-27 05:49 ./usr/share/man/man1/fixACE4consed.1.gz
-rw-r--r-- root/root       770 2014-04-27 05:49 ./usr/share/man/man1/miramem.1.gz
-rw-r--r-- root/root      1257 2014-04-27 05:49 ./usr/share/man/man1/fasta2frag.1.gz
-rw-r--r-- root/root       673 2014-04-27 05:49 ./usr/share/man/man1/miradiff.1.gz
-rw-r--r-- root/root       847 2014-04-27 05:49 ./usr/share/man/man1/fastqselect.1.gz
-rw-r--r-- root/root       916 2014-04-27 05:49 ./usr/share/man/man1/fastatool.1.gz
-rw-r--r-- root/root       671 2014-04-27 05:49 ./usr/share/man/man1/miramer.1.gz
-rw-r--r-- root/root      3198 2014-04-27 05:49 ./usr/share/man/man1/convert_project.1.gz
drwxr-xr-x root/root         0 2014-04-27 05:50 ./usr/bin/
-rwxr-xr-x root/root     15396 2014-04-27 05:49 ./usr/bin/fasta2frag
-rwxr-xr-x root/root   4078848 2014-04-27 05:50 ./usr/bin/mira
-rwxr-xr-x root/root      1617 2014-04-27 05:49 ./usr/bin/fixACE4consed
lrwxrwxrwx root/root         0 2014-04-27 05:49 ./usr/bin/miramem -> mira
lrwxrwxrwx root/root         0 2014-04-27 05:49 ./usr/bin/mirabait -> mira
lrwxrwxrwx root/root         0 2014-04-27 05:49 ./usr/bin/miraconvert -> mira

mira_4.0.2-1_amd64.changes:
Format: 1.8
Date: Sat, 26 Apr 2014 19:00:35 +0200
Source: mira
Binary: mira-assembler mira-examples mira-doc
Architecture: amd64
Version: 4.0.2-1
Distribution: utopic-proposed
Urgency: low
Maintainer: Ubuntu/amd64 Build Daemon <buildd@panlong.buildd>
Changed-By: Thorsten Alteholz <debian@alteholz.de>
Description: 
 mira-assembler - Whole Genome Shotgun and EST Sequence Assembler
 mira-doc   - documentation for the mira assembler
 mira-examples - files to experiment with the mira assembler
Changes: 
 mira (4.0.2-1) unstable; urgency=low
 .
   * new upstream version
Checksums-Sha1: 
 04aeecbc5603457140f542f4525904c840caf0b0 1403548 mira-assembler_4.0.2-1_amd64.deb
Checksums-Sha256: 
 5e3ec1c8e3c0fbf2491b2fc212cefb21c81b5b255f2a3676d9cc28d2a704888e 1403548 mira-assembler_4.0.2-1_amd64.deb
Files: 
 9e943aa4bcb1790aba1c2d1167bc3e6e 1403548 science optional mira-assembler_4.0.2-1_amd64.deb

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Built successfully
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Finished at 20140427-0550
Build needed 00:03:45, 583964k disk space
RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5949173']
Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5949173/chroot-autobuild...
RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5949173']
Unmounting chroot for build PACKAGEBUILD-5949173...
RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5949173']
Removing build PACKAGEBUILD-5949173