RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-037 4.4.0-79-generic #100-Ubuntu SMP Wed May 17 19:58:30 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_144 python-lpbuildd_144 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 14 Jun 17:16:24 ntpdate[1823]: adjust time server 10.211.37.1 offset -0.067661 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12747610', '/home/buildd/filecache-default/42e17d2fa25e748a1aa6eaeef2fe6722beaed5a9'] Unpacking chroot for build PACKAGEBUILD-12747610 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12747610'] Mounting chroot for build PACKAGEBUILD-12747610 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12747610', 'deb http://ftpmaster.internal/ubuntu artful main universe', 'deb http://ftpmaster.internal/ubuntu artful-security main universe', 'deb http://ftpmaster.internal/ubuntu artful-updates main universe', 'deb http://ftpmaster.internal/ubuntu artful-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-12747610 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12747610', 'armhf'] Updating debian chroot for build PACKAGEBUILD-12747610 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main armhf Packages [1137 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [567 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe armhf Packages [8008 kB] Get:8 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4754 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main armhf Packages [62.3 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [37.4 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe armhf Packages [147 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [77.9 kB] Fetched 15.4 MB in 7s (2105 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-7-base The following packages will be upgraded: advancecomp apt apt-transport-https bash binutils bsdutils ca-certificates cpp-6 debianutils dmsetup dpkg dpkg-dev g++-6 gcc-6 gcc-6-base init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcc1-0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libkmod2 libkrb5-26-heimdal libldap-2.4-2 libldap-common libmount1 libperl5.24 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd perl perl-base perl-modules-5.24 systemd systemd-sysv util-linux 72 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 43.7 MB of archives. After this operation, 1226 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main armhf debianutils armhf 4.8.1.1 [84.3 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main armhf bash armhf 4.4-5ubuntu1 [527 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main armhf bsdutils armhf 1:2.29-1ubuntu3 [52.1 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main armhf dpkg armhf 1.18.24ubuntu1 [1099 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main armhf login armhf 1:4.2-3.2ubuntu2 [301 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main armhf util-linux armhf 2.29-1ubuntu3 [861 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main armhf mount armhf 2.29-1ubuntu3 [124 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main armhf libperl5.24 armhf 5.24.1-3ubuntu1 [2806 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main armhf perl armhf 5.24.1-3ubuntu1 [219 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main armhf perl-base armhf 5.24.1-3ubuntu1 [1237 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main armhf perl-modules-5.24 all 5.24.1-3ubuntu1 [2662 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/main armhf init-system-helpers all 1.48 [37.8 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main armhf gcc-7-base armhf 7.1.0-6ubuntu2 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main armhf libgcc1 armhf 1:7.1.0-6ubuntu2 [38.4 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main armhf libstdc++6 armhf 7.1.0-6ubuntu2 [346 kB] Get:16 http://ftpmaster.internal/ubuntu artful-proposed/main armhf libapt-pkg5.0 armhf 1.4.6 [717 kB] Get:17 http://ftpmaster.internal/ubuntu artful-proposed/main armhf apt armhf 1.4.6 [1064 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main armhf libapparmor1 armhf 2.11.0-2ubuntu8 [26.0 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main armhf libaudit-common all 1:2.6.6-1ubuntu2 [4626 B] Get:20 http://ftpmaster.internal/ubuntu artful/main armhf libaudit1 armhf 1:2.6.6-1ubuntu2 [34.7 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main armhf libselinux1 armhf 2.6-3build1 [59.4 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main armhf libsemanage-common all 2.6-2build1 [6738 B] Get:23 http://ftpmaster.internal/ubuntu artful/main armhf libsemanage1 armhf 2.6-2build1 [71.1 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main armhf passwd armhf 1:4.2-3.2ubuntu2 [747 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main armhf libuuid1 armhf 2.29-1ubuntu3 [14.4 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main armhf libblkid1 armhf 2.29-1ubuntu3 [98.2 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main armhf libgcrypt20 armhf 1.7.6-2 [343 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main armhf libkmod2 armhf 24-1ubuntu1 [34.8 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main armhf libmount1 armhf 2.29-1ubuntu3 [106 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main armhf systemd armhf 233-6ubuntu3 [2251 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main armhf libsystemd0 armhf 233-6ubuntu3 [191 kB] Get:32 http://ftpmaster.internal/ubuntu artful-proposed/main armhf init armhf 1.48 [5806 B] Get:33 http://ftpmaster.internal/ubuntu artful/main armhf systemd-sysv armhf 233-6ubuntu3 [13.0 kB] Get:34 http://ftpmaster.internal/ubuntu artful/main armhf libfdisk1 armhf 2.29-1ubuntu3 [132 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main armhf libsmartcols1 armhf 2.29-1ubuntu3 [60.5 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main armhf libudev1 armhf 233-6ubuntu3 [52.1 kB] Get:37 http://ftpmaster.internal/ubuntu artful/main armhf libdevmapper1.02.1 armhf 2:1.02.137-2ubuntu2 [125 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main armhf dmsetup armhf 2:1.02.137-2ubuntu2 [71.2 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main armhf libroken18-heimdal armhf 7.1.0+dfsg-13 [33.7 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main armhf libasn1-8-heimdal armhf 7.1.0+dfsg-13 [138 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main armhf libtasn1-6 armhf 4.10-1.1 [30.6 kB] Get:42 http://ftpmaster.internal/ubuntu artful-proposed/main armhf libgnutls30 armhf 3.5.8-6ubuntu1 [617 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main armhf libheimbase1-heimdal armhf 7.1.0+dfsg-13 [23.9 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main armhf libhcrypto4-heimdal armhf 7.1.0+dfsg-13 [77.4 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main armhf libwind0-heimdal armhf 7.1.0+dfsg-13 [47.3 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main armhf libhx509-5-heimdal armhf 7.1.0+dfsg-13 [88.3 kB] Get:47 http://ftpmaster.internal/ubuntu artful-proposed/main armhf libsqlite3-0 armhf 3.16.2-5 [412 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main armhf libkrb5-26-heimdal armhf 7.1.0+dfsg-13 [168 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main armhf libheimntlm0-heimdal armhf 7.1.0+dfsg-13 [13.3 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main armhf libgssapi3-heimdal armhf 7.1.0+dfsg-13 [79.3 kB] Get:51 http://ftpmaster.internal/ubuntu artful/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-5ubuntu1 [133 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main armhf libldap-common all 2.4.44+dfsg-5ubuntu1 [17.5 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main armhf libssl1.0.0 armhf 1.0.2g-1ubuntu13 [711 kB] Get:54 http://ftpmaster.internal/ubuntu artful-proposed/main armhf apt-transport-https armhf 1.4.6 [30.4 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main armhf openssl armhf 1.0.2g-1ubuntu13 [485 kB] Get:56 http://ftpmaster.internal/ubuntu artful/main armhf ca-certificates all 20161130+nmu1 [186 kB] Get:57 http://ftpmaster.internal/ubuntu artful-proposed/main armhf advancecomp armhf 1.23-1 [158 kB] Get:58 http://ftpmaster.internal/ubuntu artful-proposed/main armhf binutils armhf 2.28-5ubuntu1 [2416 kB] Get:59 http://ftpmaster.internal/ubuntu artful/main armhf libgomp1 armhf 7.1.0-6ubuntu2 [64.2 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main armhf libubsan0 armhf 7.1.0-6ubuntu2 [104 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main armhf libatomic1 armhf 7.1.0-6ubuntu2 [6246 B] Get:62 http://ftpmaster.internal/ubuntu artful/main armhf libasan3 armhf 6.3.0-18ubuntu2 [294 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main armhf g++-6 armhf 6.3.0-18ubuntu2 [5923 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main armhf libstdc++-6-dev armhf 6.3.0-18ubuntu2 [1480 kB] Get:65 http://ftpmaster.internal/ubuntu artful/main armhf gcc-6 armhf 6.3.0-18ubuntu2 [5791 kB] Get:66 http://ftpmaster.internal/ubuntu artful/main armhf libgcc-6-dev armhf 6.3.0-18ubuntu2 [551 kB] Get:67 http://ftpmaster.internal/ubuntu artful/main armhf libcc1-0 armhf 7.1.0-6ubuntu2 [31.5 kB] Get:68 http://ftpmaster.internal/ubuntu artful/main armhf cpp-6 armhf 6.3.0-18ubuntu2 [5224 kB] Get:69 http://ftpmaster.internal/ubuntu artful/main armhf gcc-6-base armhf 6.3.0-18ubuntu2 [17.4 kB] Get:70 http://ftpmaster.internal/ubuntu artful/main armhf dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main armhf libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:72 http://ftpmaster.internal/ubuntu artful/main armhf libusb-0.1-4 armhf 2:0.1.12-31 [15.6 kB] Get:73 http://ftpmaster.internal/ubuntu artful-proposed/main armhf linux-libc-dev armhf 4.11.0-6.11 [895 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.7 MB in 1s (26.8 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-2build1_armhf.deb ... Unpacking libsemanage1:armhf (2.6-2build1) over (2.6-2) ... Setting up libsemanage1:armhf (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12220 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.2ubuntu2_armhf.deb ... Unpacking passwd (1:4.2-3.2ubuntu2) over (1:4.2-3.2ubuntu1) ... Setting up passwd (1:4.2-3.2ubuntu2) ... (Reading database ... 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Unpacking libsystemd0:armhf (233-6ubuntu3) over (232-21ubuntu3) ... Setting up libsystemd0:armhf (233-6ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12246 files and directories currently installed.) Preparing to unpack .../archives/init_1.48_armhf.deb ... Unpacking init (1.48) over (1.47) ... Setting up libapparmor1:armhf (2.11.0-2ubuntu8) ... Setting up libkmod2:armhf (24-1ubuntu1) ... Setting up systemd (233-6ubuntu3) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.hostname1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.locale1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.network1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.resolve1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.timedate1.conf ... (Reading database ... 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Preparing to unpack .../09-libhx509-5-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libhx509-5-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../10-libsqlite3-0_3.16.2-5_armhf.deb ... Unpacking libsqlite3-0:armhf (3.16.2-5) over (3.16.2-3) ... Preparing to unpack .../11-libkrb5-26-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libkrb5-26-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../12-libheimntlm0-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libheimntlm0-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../13-libgssapi3-heimdal_7.1.0+dfsg-13_armhf.deb ... Unpacking libgssapi3-heimdal:armhf (7.1.0+dfsg-13) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../14-libldap-2.4-2_2.4.44+dfsg-5ubuntu1_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.44+dfsg-5ubuntu1) over (2.4.44+dfsg-4ubuntu1) ... Preparing to unpack .../15-libldap-common_2.4.44+dfsg-5ubuntu1_all.deb ... 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Preparing to unpack .../23-libubsan0_7.1.0-6ubuntu2_armhf.deb ... Unpacking libubsan0:armhf (7.1.0-6ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../24-libatomic1_7.1.0-6ubuntu2_armhf.deb ... Unpacking libatomic1:armhf (7.1.0-6ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../25-libasan3_6.3.0-18ubuntu2_armhf.deb ... Unpacking libasan3:armhf (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../26-g++-6_6.3.0-18ubuntu2_armhf.deb ... Unpacking g++-6 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../27-libstdc++-6-dev_6.3.0-18ubuntu2_armhf.deb ... Unpacking libstdc++-6-dev:armhf (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../28-gcc-6_6.3.0-18ubuntu2_armhf.deb ... Unpacking gcc-6 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../29-libgcc-6-dev_6.3.0-18ubuntu2_armhf.deb ... Unpacking libgcc-6-dev:armhf (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../30-libcc1-0_7.1.0-6ubuntu2_armhf.deb ... Unpacking libcc1-0:armhf (7.1.0-6ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../31-cpp-6_6.3.0-18ubuntu2_armhf.deb ... Unpacking cpp-6 (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../32-gcc-6-base_6.3.0-18ubuntu2_armhf.deb ... Unpacking gcc-6-base:armhf (6.3.0-18ubuntu2) over (6.3.0-14ubuntu3) ... Preparing to unpack .../33-dpkg-dev_1.18.24ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../34-libdpkg-perl_1.18.24ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../35-libusb-0.1-4_2%3a0.1.12-31_armhf.deb ... Unpacking libusb-0.1-4:armhf (2:0.1.12-31) over (2:0.1.12-30) ... Preparing to unpack .../36-linux-libc-dev_4.11.0-6.11_armhf.deb ... Unpacking linux-libc-dev:armhf (4.11.0-6.11) over (4.10.0-20.22) ... Setting up libgomp1:armhf (7.1.0-6ubuntu2) ... Setting up libatomic1:armhf (7.1.0-6ubuntu2) ... Setting up perl-modules-5.24 (5.24.1-3ubuntu1) ... Setting up libperl5.24:armhf (5.24.1-3ubuntu1) ... Setting up libcc1-0:armhf (7.1.0-6ubuntu2) ... Setting up apt-transport-https (1.4.6) ... Setting up libssl1.0.0:armhf (1.0.2g-1ubuntu13) ... Setting up libldap-common (2.4.44+dfsg-5ubuntu1) ... Setting up systemd-sysv (233-6ubuntu3) ... Setting up libubsan0:armhf (7.1.0-6ubuntu2) ... Setting up gcc-6-base:armhf (6.3.0-18ubuntu2) ... Setting up linux-libc-dev:armhf (4.11.0-6.11) ... Setting up advancecomp (1.23-1) ... Setting up libroken18-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libdevmapper1.02.1:armhf (2:1.02.137-2ubuntu2) ... Setting up libtasn1-6:armhf (4.10-1.1) ... Setting up perl (5.24.1-3ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libheimbase1-heimdal:armhf (7.1.0+dfsg-13) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:armhf (3.16.2-5) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.28-5ubuntu1) ... Setting up cpp-6 (6.3.0-18ubuntu2) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libusb-0.1-4:armhf (2:0.1.12-31) ... Setting up libasan3:armhf (6.3.0-18ubuntu2) ... Setting up libgcc-6-dev:armhf (6.3.0-18ubuntu2) ... Setting up libstdc++-6-dev:armhf (6.3.0-18ubuntu2) ... Setting up libwind0-heimdal:armhf (7.1.0+dfsg-13) ... Setting up init (1.48) ... Setting up libasn1-8-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libhcrypto4-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libgnutls30:armhf (3.5.8-6ubuntu1) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up libhx509-5-heimdal:armhf (7.1.0+dfsg-13) ... Setting up gcc-6 (6.3.0-18ubuntu2) ... Setting up g++-6 (6.3.0-18ubuntu2) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up libkrb5-26-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libheimntlm0-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libgssapi3-heimdal:armhf (7.1.0+dfsg-13) ... Setting up libldap-2.4-2:armhf (2.4.44+dfsg-5ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12747610', 'armhf', 'artful-proposed', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=artful-proposed', '--purge=never', '--nolog', 'mira_4.9.6-3.dsc'] Initiating build PACKAGEBUILD-12747610 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-79-generic #100-Ubuntu SMP Wed May 17 19:58:30 UTC 2017 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-037.buildd +==============================================================================+ | mira 4.9.6-3 (armhf) 14 Jun 2017 17:17 | +==============================================================================+ Package: mira Version: 4.9.6-3 Source Version: 4.9.6-3 Distribution: artful-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/mira-m8WKK0/mira-4.9.6' with '<>' I: NOTICE: Log filtering will replace 'build/mira-m8WKK0' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12747610/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mira_4.9.6-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-9N1xIA/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-9N1xIA/apt_archive ./ InRelease Get:2 copy:/<>/resolver-9N1xIA/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-9N1xIA/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-9N1xIA/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-9N1xIA/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (136 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-9N1xIA/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12252 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-autoreconf, autoconf-archive, libbz2-dev, libexpat1-dev, perl, flex, libfl-dev, vim-common, zlib1g-dev, libboost-thread-dev, libboost-regex-dev, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, autoconf-archive, libbz2-dev, libexpat1-dev, perl, flex, libfl-dev, vim-common, zlib1g-dev, libboost-thread-dev, libboost-regex-dev, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev dpkg-deb: building package 'sbuild-build-depends-mira-dummy' in '/<>/resolver-gyX_wn/apt_archive/sbuild-build-depends-mira-dummy.deb'. Ign:1 copy:/<>/resolver-gyX_wn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-gyX_wn/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-gyX_wn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-gyX_wn/apt_archive ./ Sources [324 B] Get:5 copy:/<>/resolver-gyX_wn/apt_archive ./ Packages [621 B] Fetched 3064 B in 0s (150 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install mira build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file flex gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost1.62-dev libbsd0 libbz2-dev libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libglib2.0-0 libicu-dev libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf vim-common xxd zlib1g-dev Suggested packages: gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make bison gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.62-doc libboost-context1.62-dev libboost-coroutine1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-signals1.62-dev libboost-test1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev icu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl vim | vim-gtk | vim-gtk3 | vim-athena | vim-nox | vim-tiny The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file flex gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost1.62-dev libbsd0 libbz2-dev libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libglib2.0-0 libicu-dev libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-mira-dummy vim-common xxd zlib1g-dev 0 upgraded, 65 newly installed, 1 to remove and 0 not upgraded. Need to get 41.0 MB of archives. After this operation, 260 MB of additional disk space will be used. 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1.62.0+dfsg-4build2 [44.8 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main armhf libboost-filesystem-dev armhf 1.62.0.1 [2900 B] Get:51 http://ftpmaster.internal/ubuntu artful/main armhf libboost-regex1.62.0 armhf 1.62.0+dfsg-4build2 [215 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main armhf libicu-dev armhf 57.1-6 [15.8 MB] Get:53 http://ftpmaster.internal/ubuntu artful/universe armhf libboost-regex1.62-dev armhf 1.62.0+dfsg-4build2 [308 kB] Get:54 http://ftpmaster.internal/ubuntu artful/main armhf libboost-iostreams1.62.0 armhf 1.62.0+dfsg-4build2 [25.1 kB] Get:55 http://ftpmaster.internal/ubuntu artful/universe armhf libboost-iostreams1.62-dev armhf 1.62.0+dfsg-4build2 [34.2 kB] Get:56 http://ftpmaster.internal/ubuntu artful/universe armhf libboost-iostreams-dev armhf 1.62.0.1 [2860 B] Get:57 http://ftpmaster.internal/ubuntu artful/universe armhf libboost-regex-dev armhf 1.62.0.1 [3120 B] Get:58 http://ftpmaster.internal/ubuntu artful/main armhf libboost-system-dev armhf 1.62.0.1 [3006 B] Get:59 http://ftpmaster.internal/ubuntu artful/main armhf libboost-thread1.62.0 armhf 1.62.0+dfsg-4build2 [41.0 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main armhf libboost-thread1.62-dev armhf 1.62.0+dfsg-4build2 [48.4 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main armhf libboost-thread-dev armhf 1.62.0.1 [2882 B] Get:62 http://ftpmaster.internal/ubuntu artful/main armhf libbz2-dev armhf 1.0.6-8.1 [27.6 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main armhf libexpat1-dev armhf 2.2.0-2 [105 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main armhf libfl-dev armhf 2.6.1-1.3 [7422 B] Get:65 http://ftpmaster.internal/ubuntu artful/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu1 [166 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.0 MB in 1s (25.7 MB/s) (Reading database ... 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Setting up libicu-dev (57.1-6) ... Setting up file (1:5.30-1) ... Setting up libfl-dev:armhf (2.6.1-1.3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-system1.62-dev:armhf (1.62.0+dfsg-4build2) ... Setting up libboost-filesystem1.62.0:armhf (1.62.0+dfsg-4build2) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-chrono1.62.0:armhf (1.62.0+dfsg-4build2) ... Setting up libtool (2.4.6-2) ... Setting up libboost-filesystem1.62-dev:armhf (1.62.0+dfsg-4build2) ... Setting up po-debconf (1.0.20) ... Setting up libboost-regex1.62-dev:armhf (1.62.0+dfsg-4build2) ... Setting up libboost-system-dev:armhf (1.62.0.1) ... Setting up libboost-iostreams1.62-dev:armhf (1.62.0+dfsg-4build2) ... Setting up libboost-filesystem-dev:armhf (1.62.0.1) ... 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Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-79-generic arm64 (armv7l) Toolchain package versions: binutils_2.28-5ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.3.0-18ubuntu2 gcc-6_6.3.0-18ubuntu2 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.3.0-18ubuntu2 libstdc++6_7.1.0-6ubuntu2 linux-libc-dev_4.11.0-6.11 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.23-1 apt_1.4.6 apt-transport-https_1.4.6 autoconf_2.69-10 autoconf-archive_20160916-1ubuntu1 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu99 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.28-5ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-2ubuntu1 cpp-6_6.3.0-18ubuntu2 dash_0.5.8-2.3ubuntu1 debconf_1.5.60ubuntu1 debhelper_10.4ubuntu3 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.034-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2ubuntu2 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20161106-2 flex_2.6.1-1.3 g++_4:6.3.0-2ubuntu1 g++-6_6.3.0-18ubuntu2 gcc_4:6.3.0-2ubuntu1 gcc-6_6.3.0-18ubuntu2 gcc-6-base_6.3.0-18ubuntu2 gcc-7-base_7.1.0-6ubuntu2 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 gpgv_2.1.15-1ubuntu7 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 icu-devtools_57.1-6 init_1.48 init-system-helpers_1.48 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu8 libapt-pkg5.0_1.4.6 libarchive-zip-perl_1.59-1 libasan3_6.3.0-18ubuntu2 libasn1-8-heimdal_7.1.0+dfsg-13 libassuan0_2.4.3-2 libatomic1_7.1.0-6ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.6.6-1ubuntu2 libaudit1_1:2.6.6-1ubuntu2 libblkid1_2.29-1ubuntu3 libboost-atomic1.62-dev_1.62.0+dfsg-4build2 libboost-atomic1.62.0_1.62.0+dfsg-4build2 libboost-chrono1.62-dev_1.62.0+dfsg-4build2 libboost-chrono1.62.0_1.62.0+dfsg-4build2 libboost-date-time1.62-dev_1.62.0+dfsg-4build2 libboost-date-time1.62.0_1.62.0+dfsg-4build2 libboost-filesystem-dev_1.62.0.1 libboost-filesystem1.62-dev_1.62.0+dfsg-4build2 libboost-filesystem1.62.0_1.62.0+dfsg-4build2 libboost-iostreams-dev_1.62.0.1 libboost-iostreams1.62-dev_1.62.0+dfsg-4build2 libboost-iostreams1.62.0_1.62.0+dfsg-4build2 libboost-regex-dev_1.62.0.1 libboost-regex1.62-dev_1.62.0+dfsg-4build2 libboost-regex1.62.0_1.62.0+dfsg-4build2 libboost-serialization1.62-dev_1.62.0+dfsg-4build2 libboost-serialization1.62.0_1.62.0+dfsg-4build2 libboost-system-dev_1.62.0.1 libboost-system1.62-dev_1.62.0+dfsg-4build2 libboost-system1.62.0_1.62.0+dfsg-4build2 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libgssapi3-heimdal_7.1.0+dfsg-13 libhcrypto4-heimdal_7.1.0+dfsg-13 libheimbase1-heimdal_7.1.0+dfsg-13 libheimntlm0-heimdal_7.1.0+dfsg-13 libhogweed4_3.3-1 libhx509-5-heimdal_7.1.0+dfsg-13 libicu-dev_57.1-6 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.18-1 libk5crypto3_1.15-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.1.0+dfsg-13 libkrb5-3_1.15-2 libkrb5support0_1.15-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-5ubuntu1 libldap-common_2.4.44+dfsg-5ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-3 libperl5.24_5.24.1-3ubuntu1 libpipeline1_1.4.1-2 libpng16-16_1.6.29-2 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-4 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.1.0+dfsg-13 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3build1 libsemanage-common_2.6-2build1 libsemanage1_2.6-2build1 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu3 libsqlite3-0_3.16.2-5 libss2_1.43.4-2 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-6-dev_6.3.0-18ubuntu2 libstdc++6_7.1.0-6ubuntu2 libsystemd0_233-6ubuntu3 libtasn1-6_4.10-1.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.1.0-6ubuntu2 libudev1_233-6ubuntu3 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu3 libwind0-heimdal_7.1.0+dfsg-13 libxml2_2.9.4+dfsg1-2.2ubuntu1 linux-libc-dev_4.11.0-6.11 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu2 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu3 multiarch-support_2.24-9ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu2 patch_2.7.5-1build1 perl_5.24.1-3ubuntu1 perl-base_5.24.1-3ubuntu1 perl-modules-5.24_5.24.1-3ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mira-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 systemd_233-6ubuntu3 systemd-sysv_233-6ubuntu3 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2017b-1 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu3 vim-common_2:8.0.0197-4ubuntu2 xxd_2:8.0.0197-4ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 zlib1g-dev_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jun 14 07:13:02 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mira_4.9.6-3.dsc dpkg-source: info: extracting mira in mira-4.9.6 dpkg-source: info: unpacking mira_4.9.6.orig.tar.bz2 dpkg-source: info: unpacking mira_4.9.6-3.debian.tar.xz dpkg-source: info: applying spelling.patch dpkg-source: info: applying sls-rrna-fix dpkg-source: info: applying man-directory Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mira dpkg-buildpackage: info: source version 4.9.6-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build mira-4.9.6 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with autoreconf --parallel dh_testdir rm -f debian/*.debhelper.log debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' ( cd doc ; make clean ) || true make[2]: Entering directory '/<>/doc' cd .. && make am--refresh make[3]: Entering directory '/<>' make[3]: *** No rule to make target 'am--refresh'. Stop. make[3]: Leaving directory '/<>' Makefile:263: recipe for target '../config.status' failed make[2]: *** [../config.status] Error 2 make[2]: Leaving directory '/<>/doc' dh_auto_clean || true find * -name Makefile -exec rm '{}' ';' find * -name '*.xxd.H' -exec rm '{}' ';' find * -name '*.par.H' -exec rm '{}' ';' find * -name 'compileinfo.*' -exec rm '{}' ';' make[1]: Leaving directory '/<>' dh_autoreconf_clean dh_clean rm -f debian/debhelper-build-stamp rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/mira-assembler/ rm -f debian/mira-rfam-12s-rrna.substvars rm -f debian/mira-rfam-12s-rrna.*.debhelper rm -rf debian/mira-rfam-12s-rrna/ rm -f debian/mira-doc.substvars rm -f debian/mira-doc.*.debhelper rm -rf debian/mira-doc/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files rm -f -- src/io/so.obo.xxd find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build-arch dh build-arch --with autoreconf --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp mv -f debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp mv -f debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a -O--parallel find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:103: installing './compile' configure.ac:9: installing './missing' doc/docbook/Makefile.am:22: warning: '%'-style pattern rules are a GNU make extension src/caf/Makefile.am: installing './depcomp' src/io/Makefile.am:12: warning: '%'-style pattern rules are a GNU make extension src/mira/Makefile.am:10: warning: '%'-style pattern rules are a GNU make extension find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + > debian/autoreconf.after dh_auto_configure -a -O--parallel ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for a sed that does not truncate output... /bin/sed checking whether to add --prefix as include path... yes +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for OpenMP flag of C compiler... -fopenmp Rescuing C++ flags for OpenMP +++++++++++++++++++++++++++++++++++++ OpenMP CFLAGS: -fopenmp OpenMP CXXFLAGS: -fopenmp +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for int64_t... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether long has 64bit... no checking whether enabling 64bit compilation support... no checking build system type... arm-unknown-linux-gnueabihf checking for compiler optimisation settings... -O3 -funroll-loops +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for flex... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flex++... yes checking for xxd... yes checking for ANSI C header files... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for strftime... yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking for isblank... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for boostlib >= 1.48.0... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf LIBS now: -lboost_thread +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_REGEX_LIB: -lboost_regex CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex +++++++++++++++++++++++++++++++++++++ checking whether the Boost::System library is available... yes checking for exit in -lboost_system... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_SYSTEM_LIB: -lboost_system CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Filesystem library is available... yes checking for exit in -lboost_filesystem... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_FILESYSTEM_LIB: -lboost_filesystem CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem +++++++++++++++++++++++++++++++++++++ checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_IOSTREAMS_LIB: -lboost_iostreams CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams +++++++++++++++++++++++++++++++++++++ checking for clock_gettime in -lrt... yes +++++++++++++++++++++++++++++++++++++ Need to specifically use rt library LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ BOOST is through, yay. +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ checking for Expat XML Parser headers in /usr/include... found checking for Expat XML Parser libraries... found checking for Expat XML Parser... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat +++++++++++++++++++++++++++++++++++++ checking if zlib is wanted... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz +++++++++++++++++++++++++++++++++++++ checking for gzoffset in -lz... yes checking for BZ2_bzRead in -lbz2... yes checking for flex version compatible with MIRA... yes checking for profiling settings... no checking for purify... no checking whether mira should compile in public quiet mode... yes checking whether mira should compile with bound tracking... yes checking whether mira should compile with bug tracking... yes checking whether mira should compile with extended bug tracking... no checking whether mira should compile with function trace... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/other/Makefile config.status: creating src/other/sls/Makefile config.status: creating src/other/sls/mira-createsls/Makefile config.status: creating src/other/sls/mira-createsls/bin/Makefile config.status: creating src/stdinc/Makefile config.status: creating src/debuggersupport/Makefile config.status: creating src/memorc/Makefile config.status: creating src/errorhandling/Makefile config.status: creating src/util/Makefile config.status: creating src/io/Makefile config.status: creating src/mira/Makefile config.status: creating src/caf/Makefile config.status: creating src/support/Makefile config.status: creating src/scripts/Makefile config.status: creating src/modules/Makefile config.status: creating src/version/Makefile config.status: creating src/progs/Makefile config.status: creating man/Makefile config.status: creating doc/Makefile config.status: creating doc/docbook/Makefile config.status: creating distribution/Makefile config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -------------------------------------------------------------------------------- Summary of MIRA configuration -------------------------------------------------------------------------------- Building version ................................. 4.9.6_linux-gnueabihf_arm_32_dynamic We are building on ............................... Linux CPU supports 64 bit? ............................. no Compiler family .................................. gcc Compiler optimisation flags used ................. -O3 -funroll-loops Building completely static? ...................... no BOOST expected to compile and link? .............. yes Have OpenMP? ..................................... yes Have complete zlib support? ...................... yes Can MIRA be built on this system? ................ yes Using CFLAGS : -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -Werror=uninitialized -Werror=return-type -fopenmp Using CXXFLAGS : -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp Using LDFLAGS : -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib Using LIBS : -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 Looks good, we do not expect compilation problems. -------------------------------------------------------------------------------- Type 'make' to make the binaries and then 'make install' to install binaries and man pages. Type 'make docinstall' to install extensive documentation as HTML and PDF. rm -f debian/*.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' # some *.cc files are created by old flex version which breaks the build # see bug #812681 find -name '*.ll' | sed -e 's/[.]ll$/.cc/' | xargs rm dh_auto_build make -j4 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in man make[4]: Entering directory '/<>/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/man' Making all in src make[4]: Entering directory '/<>/src' Making all in debuggersupport make[5]: Entering directory '/<>/src/debuggersupport' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dbgsupport.o dbgsupport.C rm -f libmiradebuggersupport.a ar cru libmiradebuggersupport.a dbgsupport.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradebuggersupport.a make[5]: Leaving directory '/<>/src/debuggersupport' Making all in io make[5]: Entering directory '/<>/src/io' Making .H out of .xxd mira_ft_set.xxd.H Making .H out of .xxd gap4_ft_so_map.xxd.H Reducing so.obo for smaller so.obo.xxd Making .H out of .xxd so2xgap4map.xxd.H Making .H out of .xxd oldso2so.xxd.H Making .H out of .xxd so.obo.xxd.H make all-am make[6]: Entering directory '/<>/src/io' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o annotationmappings.o annotationmappings.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o exp.o exp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o generalio.o generalio.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fasta.o fasta.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fastq-mira.o fastq-mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o phd.o phd.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o scf.o scf.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ncbiinfoxml.o ncbiinfoxml.C /bin/bash ../../ylwrap exp_flexer.ll lex.yy.c exp_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o exp_flexer.o exp_flexer.cc rm -f libmirafio.a ar cru libmirafio.a annotationmappings.o exp.o generalio.o fasta.o fastq-mira.o phd.o scf.o ncbiinfoxml.o exp_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafio.a make[6]: Leaving directory '/<>/src/io' make[5]: Leaving directory '/<>/src/io' Making all in stdinc make[5]: Entering directory '/<>/src/stdinc' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/src/stdinc' Making all in errorhandling make[5]: Entering directory '/<>/src/errorhandling' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o errorhandling.o errorhandling.C rm -f libmiraerrorhandling.a ar cru libmiraerrorhandling.a errorhandling.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraerrorhandling.a make[5]: Leaving directory '/<>/src/errorhandling' Making all in util make[5]: Entering directory '/<>/src/util' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o machineinfo.o machineinfo.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fileanddisk.o fileanddisk.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o misc.o misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dptools.o dptools.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fmttext.o fmttext.C rm -f libmirafmttext.a ar cru libmirafmttext.a fmttext.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafmttext.a rm -f libmiradptools.a ar cru libmiradptools.a dptools.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradptools.a fileanddisk.C: In function ‘int64 myGZRead(gzFile_s*&, void*, uint64)’: fileanddisk.C:173:28: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r(errno,buf,1024); ^ rm -f libmirautil.a ar cru libmirautil.a machineinfo.o fileanddisk.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirautil.a make[5]: Leaving directory '/<>/src/util' Making all in mira make[5]: Entering directory '/<>/src/mira' Making .H out of .xxd adaptorsforclip.454.xxd.H Making .H out of .xxd adaptorsforclip.solexa.xxd.H Making .H out of .xxd adaptorsregex.solexa.xxd.H Making .H out of .xxd adaptorsforclip.iontor.xxd.H Making .H out of .xxd adaptorsregex.iontor.xxd.H Making .H out of .xxd seqforfilter_phix174.solexa.xxd.H make all-am make[6]: Entering directory '/<>/src/mira' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o estassembly.o estassembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o hashstats_sdbg.o hashstats_sdbg.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o hashstats.o hashstats.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim.o skim.C hashstats.C:1088:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} hashstats.C:83:0: note: this is the location of the previous definition #define CEBUG(bla) hashstats.C:1197:0: warning: "CEBUG" redefined #define CEBUG(bla) hashstats.C:1088:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly.o assembly.C In file included from /usr/include/c++/6/parallel/sort.h:44:0, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 parallel_sort_mwms(_RAIter __begin, _RAIter __end, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::dbgseq_t&, const HashStatistics::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Distance = int; _Tp = HashStatistics::dbgseq_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::dbgseq_t&, const HashStatistics::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::dbgseq_t&, const HashStatistics::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/algo.h: In function ‘void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&); _Parallelism = __gnu_parallel::default_parallel_tag]’: /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 sort(_RAIter __begin, _RAIter __end, _Compare __comp, ^~~~ /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/algo.h: In member function ‘void HashStatistics::sortDBGSeqsByLenDown() [with TVHASH_T = long long unsigned int]’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ /usr/include/c++/6/parallel/algo.h: In member function ‘void HashStatistics::sortDBGSeqsByMHCDown() [with TVHASH_T = long long unsigned int]’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Distance = int; _Tp = HashStatistics >::dbgseq_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/algo.h: In function ‘void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&); _Parallelism = __gnu_parallel::default_parallel_tag]’: /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(_RAIter __begin, _RAIter __end, _Compare __comp, ^~~~ /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/algo.h: In member function ‘void HashStatistics::sortDBGSeqsByLenDown() [with TVHASH_T = VLuint<128u>]’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ /usr/include/c++/6/parallel/algo.h: In member function ‘void HashStatistics::sortDBGSeqsByMHCDown() [with TVHASH_T = VLuint<128u>]’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Distance = int; _Tp = HashStatistics >::dbgseq_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/algo.h: In function ‘void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&); _Parallelism = __gnu_parallel::default_parallel_tag]’: /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(_RAIter __begin, _RAIter __end, _Compare __comp, ^~~~ /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/algo.h: In member function ‘void HashStatistics::sortDBGSeqsByLenDown() [with TVHASH_T = VLuint<256u>]’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ /usr/include/c++/6/parallel/algo.h: In member function ‘void HashStatistics::sortDBGSeqsByMHCDown() [with TVHASH_T = VLuint<256u>]’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Distance = int; _Tp = HashStatistics >::dbgseq_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/algo.h: In function ‘void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&); _Parallelism = __gnu_parallel::default_parallel_tag]’: /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(_RAIter __begin, _RAIter __end, _Compare __comp, ^~~~ /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/algo.h: In member function ‘void HashStatistics::sortDBGSeqsByLenDown() [with TVHASH_T = VLuint<512u>]’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ /usr/include/c++/6/parallel/algo.h: In member function ‘void HashStatistics::sortDBGSeqsByMHCDown() [with TVHASH_T = VLuint<512u>]’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics::dbgseq_t*; _RAIter2 = HashStatistics::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/6/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/sort.h:44:0, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 parallel_sort_mwms(_RAIter __begin, _RAIter __end, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::hashstat_t&, const HashStatistics::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ assembly.C: In member function ‘void Assembly::transferContigReadTagsToReadpool(const Contig&, std::__cxx11::list::const_iterator)’: assembly.C:2438:6: note: parameter passing for argument of type ‘const const_iterator {aka const std::_List_const_iterator}’ will change in GCC 7.1 void Assembly::transferContigReadTagsToReadpool(const Contig & con, const std::list::const_iterator bbContigI) ^~~~~~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::dbgseq_t**, std::vector::dbgseq_t*, std::allocator::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Distance = int; _Tp = HashStatistics::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::hashstat_t&, const HashStatistics::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::hashstat_t&, const HashStatistics::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/sort.h: In member function ‘void HashStatistics::priv_sorthelper(std::vector::hashstat_t>&, uint8*, uint8, const char*, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)) [with TVHASH_T = long long unsigned int]’: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer::dbgseq_t, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/merge.h:179:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ will change in GCC 7.1 __target, __max_length, __comp); ^ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::dbgseq_t**, std::vector >::dbgseq_t*, std::allocator >::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig.o contig.C In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Distance = int; _Tp = HashStatistics >::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/sort.h: In member function ‘void HashStatistics::priv_sorthelper(std::vector::hashstat_t>&, uint8*, uint8, const char*, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)) [with TVHASH_T = VLuint<128u>]’: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/merge.h:179:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __target, __max_length, __comp); ^ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::dbgseq_t**, std::vector >::dbgseq_t*, std::allocator >::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/merge.h:179:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __target, __max_length, __comp); ^ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::dbgseq_t**, std::vector >::dbgseq_t*, std::allocator >::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Distance = int; _Tp = HashStatistics >::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/sort.h: In member function ‘void HashStatistics::priv_sorthelper(std::vector::hashstat_t>&, uint8*, uint8, const char*, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)) [with TVHASH_T = VLuint<256u>]’: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/6/parallel/merge.h:179:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ will change in GCC 7.1 __target, __max_length, __comp); ^ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Distance = int; _Tp = HashStatistics >::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/sort.h: In member function ‘void HashStatistics::priv_sorthelper(std::vector::hashstat_t>&, uint8*, uint8, const char*, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)) [with TVHASH_T = VLuint<512u>]’: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o read.o read.C In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:24, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics::hashstat_t*; _RAIter2 = HashStatistics::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/6/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/deque:63:0, from ../../src/mira/hdeque.H:29, from contig.H:41, from contig.C:28: /usr/include/c++/6/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>; _ForwardIterator = std::_Deque_iterator::mapinfo_t, HDeque::mapinfo_t&, HDeque::mapinfo_t*>; _Tp = HDeque::mapinfo_t]’: /usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ read.C: In member function ‘void Read::dumpAsReadname(std::ostream&)’: read.C:1242:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)’: read.C:1273:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)’: read.C:1357:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)’: read.C:1458:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsCAF(std::ostream&)’: read.C:1530:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsMAF(std::ostream&)’: read.C:1945:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:24, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/deque:66:0, from ../../src/mira/hdeque.H:29, from contig.H:41, from contig.C:28: /usr/include/c++/6/bits/deque.tcc: In function ‘std::_Deque_iterator<_Tp, _Tp&, _Tp*> std::move(std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, _Tp&, _Tp*>) [with _Tp = HDeque::mapinfo_t]’: /usr/include/c++/6/bits/deque.tcc:1032:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 move(_Deque_iterator<_Tp, const _Tp&, const _Tp*> __first, ^~~~ /usr/include/c++/6/bits/deque.tcc:1032:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:1032:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 In file included from /usr/include/c++/6/deque:64:0, from ../../src/mira/hdeque.H:29, from contig.H:41, from contig.C:28: /usr/include/c++/6/bits/stl_deque.h: In member function ‘std::deque<_Tp, _Alloc>::iterator std::deque<_Tp, _Alloc>::_M_erase(std::deque<_Tp, _Alloc>::iterator) [with _Tp = HDeque::mapinfo_t; _Alloc = std::allocator::mapinfo_t>]’: /usr/include/c++/6/bits/stl_deque.h:427:18: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 __result); } ^ /usr/include/c++/6/bits/stl_deque.h:427:18: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_deque.h:427:18: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:24, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:24, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:24, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:24, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:24, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:24, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/deque:66:0, from ../../src/mira/hdeque.H:29, from contig.H:41, from contig.C:28: /usr/include/c++/6/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>; _Tp = HDeque::mapinfo_t; _Alloc = std::allocator::mapinfo_t>]’: /usr/include/c++/6/bits/deque.tcc:741:7: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 deque<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/deque.tcc:741:7: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 In file included from /usr/include/c++/6/deque:64:0, from ../../src/mira/hdeque.H:29, from contig.H:41, from contig.C:28: /usr/include/c++/6/bits/stl_deque.h:427:18: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 __result); } ^ /usr/include/c++/6/bits/stl_deque.h:427:18: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_deque.h:427:18: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 In file included from /usr/include/c++/6/deque:66:0, from ../../src/mira/hdeque.H:29, from contig.H:41, from contig.C:28: /usr/include/c++/6/bits/deque.tcc:764:7: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 std::copy(__first, __last, __pos - difference_type(__n)); ^~~ /usr/include/c++/6/bits/deque.tcc:764:7: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:764:7: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:775:7: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 std::copy(__mid, __last, __old_start); ^~~ /usr/include/c++/6/bits/deque.tcc:775:7: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:775:7: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:804:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 std::copy(__first, __last, __pos); ^~~ /usr/include/c++/6/bits/deque.tcc:804:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:804:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:815:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 std::copy(__first, __mid, __pos); ^~~ /usr/include/c++/6/bits/deque.tcc:815:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:815:5: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc: In member function ‘std::deque<_Tp, _Alloc>& std::deque<_Tp, _Alloc>::operator=(const std::deque<_Tp, _Alloc>&) [with _Tp = HDeque::mapinfo_t; _Alloc = std::allocator::mapinfo_t>]’: /usr/include/c++/6/bits/deque.tcc:116:21: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 _M_erase_at_end(std::copy(__x.begin(), __x.end(), ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ this->_M_impl._M_start)); ~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/deque.tcc:116:21: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:116:21: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:121:8: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 std::copy(__x.begin(), __mid, this->_M_impl._M_start); ^~~ /usr/include/c++/6/bits/deque.tcc:121:8: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:121:8: note: parameter passing for argument of type ‘std::deque::mapinfo_t, std::allocator::mapinfo_t> >::const_iterator {aka std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>}’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:579:3: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 std::__uninitialized_copy_a(__first, __last, __new_start, ^~~ /usr/include/c++/6/bits/deque.tcc:579:3: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/deque.tcc:595:3: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 std::__uninitialized_copy_a(__first, __last, ^~~ /usr/include/c++/6/bits/deque.tcc:595:3: note: parameter passing for argument of type ‘std::_Deque_iterator::mapinfo_t, const HDeque::mapinfo_t&, const HDeque::mapinfo_t*>’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::hashstat_t**, std::vector::hashstat_t*, std::allocator::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTree::hashstat_t, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/merge.h:179:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ will change in GCC 7.1 __target, __max_length, __comp); ^ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::hashstat_t**, std::vector >::hashstat_t*, std::allocator >::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::hashstat_t, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/merge.h:179:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __target, __max_length, __comp); ^ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::hashstat_t**, std::vector >::hashstat_t*, std::allocator >::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::hashstat_t, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/merge.h:179:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __target, __max_length, __comp); ^ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/smart_ptr/shared_ptr.hpp:38, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::hashstat_t**, std::vector >::hashstat_t*, std::allocator >::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::hashstat_t, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/algo.h:57:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/6/parallel/merge.h:179:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ will change in GCC 7.1 __target, __max_length, __comp); ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_analysis.o contig_analysis.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ads.o ads.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o adsfacts.o adsfacts.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o align.o align.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_info.o assembly_info.C In file included from /usr/include/c++/6/vector:69:0, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from ../../src/mira/parameters.H:43, from ads.H:34, from ads.C:37: /usr/include/c++/6/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ will change in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:64:0, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from ../../src/mira/parameters.H:43, from ads.H:34, from ads.C:37: /usr/include/c++/6/bits/stl_vector.h: In static member function ‘static bool AlignedDualSeq::staticInitialiser()’: /usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_buildcontigs.o assembly_buildcontigs.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_io.o assembly_io.C assembly_buildcontigs.C:80:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:55:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_buildcontigs.C:1251:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_buildcontigs.C:80:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:1332:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:1251:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_buildcontigs.C:1485:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_buildcontigs.C:1332:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:1496:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:1485:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_buildcontigs.C:1621:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_buildcontigs.C:1496:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:2304:0: warning: "VCOUT" redefined #define VCOUT(bla) assembly_buildcontigs.C:2043:0: note: this is the location of the previous definition #define VCOUT(bla) {if(verbose) {cout << bla;} } In file included from /usr/include/c++/6/vector:69:0, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/6/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ will change in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ will change in GCC 7.1 In file included from /usr/include/c++/6/vector:64:0, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/6/bits/stl_vector.h: In member function ‘void AssemblyInfo::zeroStats()’: /usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In member function ‘void AssemblyInfo::calcCurrentInfo()’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_misc.o assembly_misc.C assembly_misc.C:1871:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_misc.C:55:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_misc.C:1905:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_misc.C:1871:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_output.o assembly_output.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_pbcorrect.o assembly_pbcorrect.C assembly_misc.C: In member function ‘void Assembly::analyseOverlapHashProfile(std::vector&, std::vector::const_iterator, ADSEstimator&)’: assembly_misc.C:1873:6: note: parameter passing for argument of type ‘std::vector::const_iterator {aka __gnu_cxx::__normal_iterator >}’ will change in GCC 7.1 void Assembly::analyseOverlapHashProfile(std::vector & profile, std::vector::const_iterator seI, ADSEstimator & adse) ^~~~~~~~ assembly_pbcorrect.C:59:0: warning: "CEBUG" redefined #define CEBUG(bla) { if(docebug) {cout << bla; cout.flush();}} assembly_pbcorrect.C:45:0: note: this is the location of the previous definition #define CEBUG(bla) g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C assembly_reduceskimhits.C:1111:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:878:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_reduceskimhits.C:1151:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_reduceskimhits.C:1111:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2742:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:1151:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_reduceskimhits.C:2760:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_reduceskimhits.C:2742:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2764:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2760:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_reduceskimhits.C:2803:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_reduceskimhits.C:2764:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2808:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2803:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_reduceskimhits.C:2887:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_reduceskimhits.C:2808:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from ../../src/mira/assembly_output.H:32, from assembly_output.C:33: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from ../../src/mira/assembly_output.H:32, from assembly_output.C:33: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = codoninfo_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from ../../src/mira/assembly_output.H:32, from assembly_output.C:33: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __partial_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__make_heap(__first, __middle, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__make_heap(__first, __middle, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__make_heap(__first, __middle, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__make_heap(__first, __middle, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__make_heap(__first, __middle, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void assout::saveFeatureAnalysis(std::__cxx11::list&, ReadPool&, const string&, const string&, const string&, bool)’: /usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__partial_sort(__first, __last, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/parallel/sort.h:44:0, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 parallel_sort_mwms(_RAIter __begin, _RAIter __end, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = skimedges_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/6/parallel/algo.h: In function ‘void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const skimedges_t&, const skimedges_t&); _Parallelism = __gnu_parallel::default_parallel_tag]’: /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 sort(_RAIter __begin, _RAIter __end, _Compare __comp, ^~~~ /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/6/parallel/algo.h: In member function ‘size_t Assembly::rsh4_getNextNormalisedSkimBlock(std::__cxx11::list&, int64&, int64&)’: /usr/include/c++/6/parallel/algo.h:1867:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); ^~~~ In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >]’: /usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __push_heap(_RandomAccessIterator __first, ^~~~~~~~~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_swalign.o assembly_swalign.C /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_consensus.o contig_consensus.C In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_covanalysis.o contig_covanalysis.C In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_edit.o contig_edit.C In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/parallel/sort.h:44:0, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/6/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]’: /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 parallel_sort_mwms(_RAIter __begin, _RAIter __end, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/6/parallel/algo.h: In function ‘void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less; _Parallelism = __gnu_parallel::default_parallel_tag]’: /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 sort(_RAIter __begin, _RAIter __end, _Compare __comp, ^~~~ /usr/include/c++/6/parallel/algo.h:1754:3: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/parallel/algo.h:45:0, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/6/parallel/sort.h:105:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 parallel_sort_mwms<__stable, true> ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h: In member function ‘void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/parallel/algorithm:37:0, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/6/parallel/algo.h:1779:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 sort(__begin, __end, std::less<_ValueType>(), ^~~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]’: /usr/include/c++/6/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 multiway_merge_3_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]’: /usr/include/c++/6/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 multiway_merge_4_variant(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse > >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 In file included from /usr/include/c++/6/algorithm:62:0, from /usr/include/boost/core/swap.hpp:25, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:28, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]’: /usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ^~~ /usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ In file included from /usr/include/c++/6/parallel/multiway_mergesort.h:40:0, from /usr/include/c++/6/parallel/sort.h:44, from /usr/include/c++/6/parallel/algo.h:45, from /usr/include/c++/6/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTree >; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]’: /usr/include/c++/6/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 multiway_merge_loser_tree(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/6/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]’: /usr/include/c++/6/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __sequential_multiway_merge(_RAIterIterator __seqs_begin, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_featureinfo.o contig_featureinfo.C contig_featureinfo.C:512:0: warning: "CEBUGF2" redefined #define CEBUGF2 contig_featureinfo.C:473:0: note: this is the location of the previous definition #define CEBUGF2(bla) g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_output.o contig_output.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_pairconsistency.o contig_pairconsistency.C contig_pairconsistency.C:313:0: warning: "CEBUG" redefined #define CEBUG(bla) contig_pairconsistency.C:34:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} contig_pairconsistency.C:315:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} contig_pairconsistency.C:313:0: note: this is the location of the previous definition #define CEBUG(bla) contig_pairconsistency.C:399:0: warning: "CEBUG" redefined #define CEBUG(bla) contig_pairconsistency.C:315:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} In file included from /usr/include/c++/6/vector:69:0, from ../../src/mira/hdeque.H:31, from contig.H:41, from contig_pairconsistency.C:26: /usr/include/c++/6/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ will change in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/6/vector:64:0, from ../../src/mira/hdeque.H:31, from contig.H:41, from contig_pairconsistency.C:26: /usr/include/c++/6/bits/stl_vector.h: In member function ‘void Contig::priv_cprForRGID(ReadGroupLib::ReadGroupID, std::vector&, std::vector&, std::vector&)’: /usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dataprocessing.o dataprocessing.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dynamic.o dynamic.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gbf_parse.o gbf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gff_parse.o gff_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gff_save.o gff_save.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o maf_parse.o maf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 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-DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o multitag.o multitag.C /bin/bash ../../ylwrap parameters_flexer.ll lex.yy.c parameters_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o parameters.o parameters.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o pcrcontainer.o pcrcontainer.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 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-pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o preventinitfiasco.o preventinitfiasco.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ 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-DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readpool_io.o readpool_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o sam_collect.o sam_collect.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o scaffolder.o scaffolder.C scaffolder.C:203:0: warning: "CEBUG" redefined #define CEBUG(bla) scaffolder.C:84:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o seqtohash.o seqtohash.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o simplebloomfilter.o simplebloomfilter.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim_lowbph.o skim_lowbph.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o warnings.o warnings.C rm -f libmiraestass.a ar cru libmiraestass.a estassembly.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraestass.a g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o parameters_flexer.o parameters_flexer.cc rm -f libmira.a ar cru libmira.a hashstats_sdbg.o hashstats.o skim.o assembly.o contig.o read.o contig_analysis.o ads.o adsfacts.o align.o assembly_info.o assembly_buildcontigs.o assembly_io.o assembly_misc.o assembly_output.o assembly_pbcorrect.o assembly_reduceskimhits.o assembly_swalign.o contig_consensus.o contig_covanalysis.o contig_edit.o contig_featureinfo.o contig_output.o contig_pairconsistency.o dataprocessing.o dynamic.o gbf_parse.o gff_parse.o gff_save.o maf_parse.o manifest.o multitag.o parameters_flexer.o parameters.o pcrcontainer.o ppathfinder.o preventinitfiasco.o readgrouplib.o readlotstat.o readpool.o readpool_io.o sam_collect.o scaffolder.o seqtohash.o simplebloomfilter.o skim_lowbph.o warnings.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmira.a make[6]: Leaving directory '/<>/src/mira' make[5]: Leaving directory '/<>/src/mira' Making all in caf make[5]: Entering directory '/<>/src/caf' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o caf.o caf.C /bin/bash ../../ylwrap caf_flexer.ll lex.yy.c caf_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o caf_flexer.o caf_flexer.cc rm -f libmiracaf.a ar cru libmiracaf.a caf.o caf_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiracaf.a make[5]: Leaving directory '/<>/src/caf' Making all in memorc make[5]: Entering directory '/<>/src/memorc' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o memorc.o memorc.C memorc.C: In static member function ‘static void MemORC::statistics()’: memorc.C:155:65: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::map::size_type {aka unsigned int}’ [-Wformat=] printf("Num. memory blocks : %llu\n", MOC_memblocks.size()); ^ memorc.C:156:65: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::map::size_type {aka unsigned int}’ [-Wformat=] printf("Num. active hot blocks : %llu\n", MOC_hotblocks.size()); ^ memorc.C:157:72: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::vector::size_type {aka unsigned int}’ [-Wformat=] printf("Num. pending hot blocks: %llu\n", MOC_hotaidsrequested.size()); ^ memorc.C:158:60: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t {aka unsigned int}’ [-Wformat=] printf("Total mem reqested : %llu\n", MOC_reqmemalloc); ^ memorc.C:159:90: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t {aka unsigned int}’ [-Wformat=] printf("Total mem allocated : %llu (including pads and fences)\n", MOC_totalmemalloc); ^ memorc.C: In static member function ‘static void* MemORC::newMemBlock(size_t)’: memorc.C:225:116: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t {aka unsigned int}’ [-Wformat=] printf("Used malloc()\nTried to allocate %llu byte.\nSorry, memory allocation failed. Bailing out.\n", totaln); ^ memorc.C: In static member function ‘static void MemORC::deleteMemBlock(void*)’: memorc.C:311:112: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64 {aka long long unsigned int}’ [-Wformat=] printf("Nearest memblock above (%d):\t",reinterpret_cast(mbI->first)-reinterpret_cast(usraddr)); ^ memorc.C:318:113: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64 {aka long long unsigned int}’ [-Wformat=] printf("Nearest memblock below (-%d):\t",reinterpret_cast(usraddr)-reinterpret_cast(mbI->first)); ^ memorc.C: In static member function ‘static bool MemORC::checkMemBlock(std::map::iterator)’: memorc.C:500:44: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t {aka unsigned int}’ [-Wformat=] printf("Size: %llu\n", mbI->second.size); ^ memorc.C: In static member function ‘static void MemORC::printMemBlockInfo(std::map::iterator)’: memorc.C:558:50: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] printf("%p\t%llu\t",mbI->first,mbI->second.size); ^ memorc.C: In static member function ‘static bool MemORC::checkMemBlock(std::map::iterator)’: memorc.C:411:6: note: parameter passing for argument of type ‘std::map::iterator {aka std::_Rb_tree_iterator >}’ will change in GCC 7.1 bool MemORC::checkMemBlock(mbmap_t::iterator mbI) ^~~~~~ memorc.C: In static member function ‘static void MemORC::printMemBlockInfo(std::map::iterator)’: memorc.C:553:6: note: parameter passing for argument of type ‘std::map::iterator {aka std::_Rb_tree_iterator >}’ will change in GCC 7.1 void MemORC::printMemBlockInfo(mbmap_t::iterator mbI) ^~~~~~ rm -f libmemorc.a g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o main.o main.C ar cru libmemorc.a memorc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmemorc.a /bin/bash ../../libtool --tag=CXX --mode=link g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o main main.o -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o main main.o -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/arm-linux-gnueabihf/libexpat.so -lm -lz -lbz2 -fopenmp -pthread make[5]: Leaving directory '/<>/src/memorc' Making all in modules make[5]: Entering directory '/<>/src/modules' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_sigconex.o mod_sigconex.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_scaffold.o mod_scaffold.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_bait.o mod_bait.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_dbgreplay.o mod_dbgreplay.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_diff.o mod_diff.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mer.o mod_mer.C In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/mira/parameters.H:36, from ../../src/modules/mod_sigconex.H:34, from mod_sigconex.C:27: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 In file included from /usr/include/c++/6/bits/stl_algo.h:61:0, from /usr/include/c++/6/algorithm:62, from ../../src/mira/parameters.H:36, from ../../src/modules/mod_sigconex.H:34, from mod_sigconex.C:27: /usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = scinfo_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/6/algorithm:62:0, from ../../src/mira/parameters.H:36, from ../../src/modules/mod_sigconex.H:34, from mod_sigconex.C:27: /usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 /usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ^~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mira.o mod_mira.C /usr/include/c++/6/bits/stl_algo.h: In member function ‘void MiraSCE::excon(int, char**)’: /usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__introsort_loop(__first, __last, ^~~ /usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ^~~ /usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ will change in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ^~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_convert.o mod_convert.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_memestim.o mod_memestim.C mod_mira.C: In function ‘void miraMain_extractContigs(int, char**)’: mod_mira.C:414:19: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir("../.."); ^ mod_mira.C:439:19: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir("../.."); ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_tagsnp.o mod_tagsnp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o misc.o misc.C rm -f libmiramodules.a ar cru libmiramodules.a mod_sigconex.o mod_scaffold.o mod_bait.o mod_dbgreplay.o mod_diff.o mod_mer.o mod_mira.o mod_convert.o mod_memestim.o mod_tagsnp.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiramodules.a make[5]: Leaving directory '/<>/src/modules' Making all in support make[5]: Entering directory '/<>/src/support' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/src/support' Making all in scripts make[5]: Entering directory '/<>/src/scripts' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/src/scripts' Making all in version make[5]: Entering directory '/<>/src/version' make all-am make[6]: Entering directory '/<>/src/version' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mversion.o mversion.C rm -f libmiraversion.a ar cru libmiraversion.a mversion.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraversion.a make[6]: Leaving directory '/<>/src/version' make[5]: Leaving directory '/<>/src/version' Making all in progs make[5]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt make all-am make[6]: Entering directory '/<>/src/progs' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mira.o mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o quirks.o quirks.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o miratest.o miratest.C Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/arm-linux-gnueabihf/libexpat.so -lm -lz -lbz2 -fopenmp -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/arm-linux-gnueabihf/libexpat.so -lm -lz -lbz2 -fopenmp -pthread make[6]: Leaving directory '/<>/src/progs' make[5]: Leaving directory '/<>/src/progs' Making all in other make[5]: Entering directory '/<>/src/other' Making all in sls make[6]: Entering directory '/<>/src/other/sls' Making all in mira-createsls make[7]: Entering directory '/<>/src/other/sls/mira-createsls' Making all in bin make[8]: Entering directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Nothing to be done for 'all'. make[8]: Leaving directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/<>/src/other/sls/mira-createsls' make[8]: Nothing to be done for 'all-am'. make[8]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Entering directory '/<>/src/other/sls' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/<>/src/other/sls' make[6]: Leaving directory '/<>/src/other/sls' make[6]: Entering directory '/<>/src/other' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/<>/src/other' make[5]: Leaving directory '/<>/src/other' make[5]: Entering directory '/<>/src' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/*.debhelper.log debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>' make check make[2]: Entering directory '/<>' make check-recursive make[3]: Entering directory '/<>' Making check in man make[4]: Entering directory '/<>/man' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/man' Making check in src make[4]: Entering directory '/<>/src' Making check in debuggersupport make[5]: Entering directory '/<>/src/debuggersupport' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/debuggersupport' Making check in io make[5]: Entering directory '/<>/src/io' make check-am make[6]: Entering directory '/<>/src/io' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/<>/src/io' make[5]: Leaving directory '/<>/src/io' Making check in stdinc make[5]: Entering directory '/<>/src/stdinc' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/stdinc' Making check in errorhandling make[5]: Entering directory '/<>/src/errorhandling' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/errorhandling' Making check in util make[5]: Entering directory '/<>/src/util' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/util' Making check in mira make[5]: Entering directory '/<>/src/mira' make check-am make[6]: Entering directory '/<>/src/mira' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/<>/src/mira' make[5]: Leaving directory '/<>/src/mira' Making check in caf make[5]: Entering directory '/<>/src/caf' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/caf' Making check in memorc make[5]: Entering directory '/<>/src/memorc' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/memorc' Making check in modules make[5]: Entering directory '/<>/src/modules' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/modules' Making check in support make[5]: Entering directory '/<>/src/support' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/support' Making check in scripts make[5]: Entering directory '/<>/src/scripts' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/scripts' Making check in version make[5]: Entering directory '/<>/src/version' make check-am make[6]: Entering directory '/<>/src/version' make[6]: Leaving directory '/<>/src/version' make[5]: Leaving directory '/<>/src/version' Making check in progs make[5]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt make check-am make[6]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/arm-linux-gnueabihf/libexpat.so -lm -lz -lbz2 -fopenmp -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/arm-linux-gnueabihf/libexpat.so -lm -lz -lbz2 -fopenmp -pthread make[6]: Leaving directory '/<>/src/progs' make[5]: Leaving directory '/<>/src/progs' Making check in other make[5]: Entering directory '/<>/src/other' Making check in sls make[6]: Entering directory '/<>/src/other/sls' Making check in mira-createsls make[7]: Entering directory '/<>/src/other/sls/mira-createsls' Making check in bin make[8]: Entering directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Nothing to be done for 'check'. make[8]: Leaving directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/<>/src/other/sls/mira-createsls' make[8]: Nothing to be done for 'check-am'. make[8]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Entering directory '/<>/src/other/sls' make[7]: Nothing to be done for 'check-am'. make[7]: Leaving directory '/<>/src/other/sls' make[6]: Leaving directory '/<>/src/other/sls' make[6]: Entering directory '/<>/src/other' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/<>/src/other' make[5]: Leaving directory '/<>/src/other' make[5]: Entering directory '/<>/src' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/.debhelper/generated/mira-assembler/ rm -rf debian/mira-assembler/ dh_installdirs -a -O--parallel install -d debian/mira-assembler install -d debian/mira-assembler/usr/bin rm -f debian/*.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' make install DESTDIR=/<>/debian/mira-assembler make[2]: Entering directory '/<>' make install-recursive make[3]: Entering directory '/<>' Making install in man make[4]: Entering directory '/<>/man' make[5]: Entering directory '/<>/man' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/mira-assembler/usr/share/man/man1' /usr/bin/install -c -m 644 mirabait.1 miradiff.1 miramer.1 mira.1 miraconvert.1 miramem.1 '/<>/debian/mira-assembler/usr/share/man/man1' make[5]: Leaving directory '/<>/man' make[4]: Leaving directory '/<>/man' Making install in src make[4]: Entering directory '/<>/src' Making install in debuggersupport make[5]: Entering directory '/<>/src/debuggersupport' make[6]: Entering directory '/<>/src/debuggersupport' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/debuggersupport' make[5]: Leaving directory '/<>/src/debuggersupport' Making install in io make[5]: Entering directory '/<>/src/io' make install-am make[6]: Entering directory '/<>/src/io' make[7]: Entering directory '/<>/src/io' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/io' make[6]: Leaving directory '/<>/src/io' make[5]: Leaving directory '/<>/src/io' Making install in stdinc make[5]: Entering directory '/<>/src/stdinc' make[6]: Entering directory '/<>/src/stdinc' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/stdinc' make[5]: Leaving directory '/<>/src/stdinc' Making install in errorhandling make[5]: Entering directory '/<>/src/errorhandling' make[6]: Entering directory '/<>/src/errorhandling' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/errorhandling' make[5]: Leaving directory '/<>/src/errorhandling' Making install in util make[5]: Entering directory '/<>/src/util' make[6]: Entering directory '/<>/src/util' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/util' make[5]: Leaving directory '/<>/src/util' Making install in mira make[5]: Entering directory '/<>/src/mira' make install-am make[6]: Entering directory '/<>/src/mira' make[7]: Entering directory '/<>/src/mira' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/mira' make[6]: Leaving directory '/<>/src/mira' make[5]: Leaving directory '/<>/src/mira' Making install in caf make[5]: Entering directory '/<>/src/caf' make[6]: Entering directory '/<>/src/caf' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/caf' make[5]: Leaving directory '/<>/src/caf' Making install in memorc make[5]: Entering directory '/<>/src/memorc' make[6]: Entering directory '/<>/src/memorc' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/memorc' make[5]: Leaving directory '/<>/src/memorc' Making install in modules make[5]: Entering directory '/<>/src/modules' make[6]: Entering directory '/<>/src/modules' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/modules' make[5]: Leaving directory '/<>/src/modules' Making install in support make[5]: Entering directory '/<>/src/support' make[6]: Entering directory '/<>/src/support' make[6]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' /usr/bin/install -c -m 644 consedrc.13.0 consedtaglib.txt GTAGDB README '/<>/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' make[6]: Leaving directory '/<>/src/support' make[5]: Leaving directory '/<>/src/support' Making install in scripts make[5]: Entering directory '/<>/src/scripts' make[6]: Entering directory '/<>/src/scripts' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/scripts' make[5]: Leaving directory '/<>/src/scripts' Making install in version make[5]: Entering directory '/<>/src/version' make install-am make[6]: Entering directory '/<>/src/version' make[7]: Entering directory '/<>/src/version' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/version' make[6]: Leaving directory '/<>/src/version' make[5]: Leaving directory '/<>/src/version' Making install in progs make[5]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt make install-am make[6]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/arm-linux-gnueabihf/libexpat.so -lm -lz -lbz2 -fopenmp -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/arm-linux-gnueabihf/libexpat.so -lm -lz -lbz2 -fopenmp -pthread make[7]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt /bin/mkdir -p '/<>/debian/mira-assembler/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c mira '/<>/debian/mira-assembler/usr/bin' libtool: install: /usr/bin/install -c mira /<>/debian/mira-assembler/usr/bin/mira make install-exec-hook make[8]: Entering directory '/<>/src/progs' cd /<>/debian/mira-assembler/usr/bin && \ rm -f miramem && \ ln -s mira miramem && \ rm -f mirabait && \ ln -s mira mirabait &&\ rm -f miraconvert && \ ln -s mira miraconvert && \ rm -f miramer && \ ln -s mira miramer make[8]: Leaving directory '/<>/src/progs' make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/progs' make[6]: Leaving directory '/<>/src/progs' make[5]: Leaving directory '/<>/src/progs' Making install in other make[5]: Entering directory '/<>/src/other' Making install in sls make[6]: Entering directory '/<>/src/other/sls' Making install in mira-createsls make[7]: Entering directory '/<>/src/other/sls/mira-createsls' Making install in bin make[8]: Entering directory '/<>/src/other/sls/mira-createsls/bin' make[9]: Entering directory '/<>/src/other/sls/mira-createsls/bin' make[9]: Nothing to be done for 'install-exec-am'. make[9]: Nothing to be done for 'install-data-am'. make[9]: Leaving directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Leaving directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/<>/src/other/sls/mira-createsls' make[9]: Entering directory '/<>/src/other/sls/mira-createsls' make[9]: Nothing to be done for 'install-exec-am'. make[9]: Nothing to be done for 'install-data-am'. make[9]: Leaving directory '/<>/src/other/sls/mira-createsls' make[8]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Entering directory '/<>/src/other/sls' make[8]: Entering directory '/<>/src/other/sls' make[8]: Nothing to be done for 'install-exec-am'. make[8]: Nothing to be done for 'install-data-am'. make[8]: Leaving directory '/<>/src/other/sls' make[7]: Leaving directory '/<>/src/other/sls' make[6]: Leaving directory '/<>/src/other/sls' make[6]: Entering directory '/<>/src/other' make[7]: Entering directory '/<>/src/other' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/other' make[6]: Leaving directory '/<>/src/other' make[5]: Leaving directory '/<>/src/other' make[5]: Entering directory '/<>/src' make[6]: Entering directory '/<>/src' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src' make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[5]: Entering directory '/<>' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a -O--parallel install -d debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a NEWS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a README debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a THANKS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a HELP_WANTED debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a debian/README.test debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a debian/tests/run-unit-test debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a debian/tests/est_assembly.conf debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a debian/tests/solexa1.conf debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a debian/tests/solexa2.conf debian/mira-assembler/usr/share/doc/mira-assembler cd 'debian/tests/test_data//..' && find 'test_data' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/mira-assembler/usr/share/doc/mira-assembler chown -R 0:0 debian/mira-assembler/usr/share/doc chmod -R go=rX debian/mira-assembler/usr/share/doc chmod -R u\+rw debian/mira-assembler/usr/share/doc install -p -m0644 debian/copyright debian/mira-assembler/usr/share/doc/mira-assembler/copyright rm -f debian/*.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs src/mira/CHANGES.txt install -p -m0644 debian/changelog debian/mira-assembler/usr/share/doc/mira-assembler/changelog.Debian install -p -m0644 src/mira/CHANGES.txt debian/mira-assembler/usr/share/doc/mira-assembler/changelog make[1]: Leaving directory '/<>' dh_installman -a -O--parallel install -d debian/.debhelper/generated/mira-assembler man --recode UTF-8 ./miradiff\.1 > miradiff\.1\.new chmod 0755 -- miradiff.1.new chown 0:0 -- miradiff.1.new mv -f miradiff.1.new miradiff.1 man --recode UTF-8 ./miramer\.1 > miramer\.1\.new chmod 0755 -- miramer.1.new chown 0:0 -- miramer.1.new mv -f miramer.1.new miramer.1 man --recode UTF-8 ./miraconvert\.1 > miraconvert\.1\.new chmod 0755 -- miraconvert.1.new chown 0:0 -- miraconvert.1.new mv -f miraconvert.1.new miraconvert.1 man --recode UTF-8 ./mirabait\.1 > mirabait\.1\.new chmod 0755 -- mirabait.1.new chown 0:0 -- mirabait.1.new mv -f mirabait.1.new mirabait.1 man --recode UTF-8 ./miramem\.1 > miramem\.1\.new chmod 0755 -- miramem.1.new chown 0:0 -- miramem.1.new mv -f miramem.1.new miramem.1 man --recode UTF-8 ./mira\.1 > mira\.1\.new chmod 0755 -- mira.1.new chown 0:0 -- mira.1.new mv -f mira.1.new mira.1 install -d debian/.debhelper/generated/mira-rfam-12s-rrna install -d debian/.debhelper/generated/mira-doc dh_lintian -a -O--parallel install -d debian/mira-assembler/usr/share/lintian/overrides install -p -m0644 debian/mira-assembler.lintian-overrides debian/mira-assembler/usr/share/lintian/overrides/mira-assembler dh_perl -a -O--parallel dh_link -a -O--parallel rm -f debian/mira-assembler/usr/bin/mirabait ln -sf mira debian/mira-assembler/usr/bin/mirabait rm -f debian/mira-assembler/usr/bin/miraconvert ln -sf mira debian/mira-assembler/usr/bin/miraconvert rm -f debian/mira-assembler/usr/bin/miramer ln -sf mira debian/mira-assembler/usr/bin/miramer rm -f debian/mira-assembler/usr/bin/miramem ln -sf mira debian/mira-assembler/usr/bin/miramem dh_strip_nondeterminism -a -O--parallel dh_compress -a -O--parallel cd debian/mira-assembler chmod a-x usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 gzip -9nf usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 cd '/<>' dh_fixperms -a -O--parallel find debian/mira-assembler -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/mira-assembler ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-assembler/usr/share/doc -type f -a -true -a ! -regex 'debian/mira-assembler/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-assembler/usr/share/man debian/mira-assembler/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a -O--parallel dh_strip -a -O--parallel install -d debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/4f objcopy --only-keep-debug --compress-debug-sections debian/mira-assembler/usr/bin/mira debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/4f/87530eb6eb919e93073b9de29c93dc19a743a7.debug chmod 0644 -- debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/4f/87530eb6eb919e93073b9de29c93dc19a743a7.debug chown 0:0 -- debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/4f/87530eb6eb919e93073b9de29c93dc19a743a7.debug strip --remove-section=.comment --remove-section=.note debian/mira-assembler/usr/bin/mira objcopy --add-gnu-debuglink debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/4f/87530eb6eb919e93073b9de29c93dc19a743a7.debug debian/mira-assembler/usr/bin/mira install -d debian/.debhelper/mira-assembler/dbgsym-root/usr/share/doc ln -s mira-assembler debian/.debhelper/mira-assembler/dbgsym-root/usr/share/doc/mira-assembler-dbgsym dh_makeshlibs -a -O--parallel rm -f debian/mira-assembler/DEBIAN/shlibs dh_shlibdeps -a -O--parallel install -d debian/mira-assembler/DEBIAN dpkg-shlibdeps -Tdebian/mira-assembler.substvars debian/mira-assembler/usr/bin/mira dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel echo misc:Depends= >> debian/mira-assembler.substvars echo misc:Pre-Depends= >> debian/mira-assembler.substvars install -d debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -Pdebian/.debhelper/mira-assembler/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=extra -UHomepage -DAuto-Built-Package=debug-symbols -DPackage=mira-assembler-dbgsym "-DDepends=mira-assembler (= \${binary:Version})" "-DDescription=Debug symbols for mira-assembler" -DBuild-Ids=4f87530eb6eb919e93073b9de29c93dc19a743a7 -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/control dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -Pdebian/mira-assembler -UMulti-Arch chmod 0644 -- debian/mira-assembler/DEBIAN/control chown 0:0 -- debian/mira-assembler/DEBIAN/control dh_md5sums -a -O--parallel (cd debian/mira-assembler >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/mira-assembler/DEBIAN/md5sums chown 0:0 -- debian/mira-assembler/DEBIAN/md5sums (cd debian/.debhelper/mira-assembler/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/md5sums rm -f debian/*.debhelper.log debian/rules override_dh_builddeb make[1]: Entering directory '/<>' dh_builddeb -- -Z xz install -d debian/.debhelper/scratch-space/build-mira-assembler dpkg-deb -Z xz --build debian/.debhelper/mira-assembler/dbgsym-root debian/.debhelper/scratch-space/build-mira-assembler INFO: pkgstriptranslations version 131 pkgstriptranslations: processing mira-assembler-dbgsym (in debian/.debhelper/mira-assembler/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/control, package mira-assembler-dbgsym, directory debian/.debhelper/mira-assembler/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package mira-assembler-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mira-assembler-dbgsym' in 'debian/.debhelper/scratch-space/build-mira-assembler/mira-assembler-dbgsym_4.9.6-3_armhf.deb'. Renaming mira-assembler-dbgsym_4.9.6-3_armhf.deb to mira-assembler-dbgsym_4.9.6-3_armhf.ddeb mv -f debian/.debhelper/scratch-space/build-mira-assembler/mira-assembler-dbgsym_4.9.6-3_armhf.deb ../mira-assembler-dbgsym_4.9.6-3_armhf.ddeb dpkg-deb -Z xz --build debian/mira-assembler .. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing mira-assembler (in debian/mira-assembler); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mira-assembler/DEBIAN/control, package mira-assembler, directory debian/mira-assembler .. removing usr/share/doc/mira-assembler/changelog.gz pkgstripfiles: Truncating usr/share/doc/mira-assembler/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package mira-assembler ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mira-assembler' in '../mira-assembler_4.9.6-3_armhf.deb'. make[1]: Leaving directory '/<>' dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../mira_4.9.6-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build mira-4.9.6 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170614-1729 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mira_4.9.6-3_armhf.changes: --------------------------- Format: 1.8 Date: Mon, 12 Jun 2017 18:29:50 -0400 Source: mira Binary: mira-assembler mira-rfam-12s-rrna mira-doc Architecture: armhf Version: 4.9.6-3 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nadiya Sitdykova Description: mira-assembler - Whole Genome Shotgun and EST Sequence Assembler mira-doc - documentation for the mira assembler mira-rfam-12s-rrna - extract of RFAM 12 rRNA database Changes: mira (4.9.6-3) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * Add autopkgtest test-suite for denovo, mapping and est assembly Checksums-Sha1: 94b42b08da00682147db7058459fe2d2dda71344 24110458 mira-assembler-dbgsym_4.9.6-3_armhf.ddeb 91a655522eed730e94b76d18839b43bbbbf07649 1966400 mira-assembler_4.9.6-3_armhf.deb bf01f1be2a4d5c871c105c006e78e0e7970f3f9f 6354 mira_4.9.6-3_armhf.buildinfo Checksums-Sha256: 60260427e8e5cfa0da20f5387a5bbd5684a3913213fc3d986bdbbfcd6271b6f8 24110458 mira-assembler-dbgsym_4.9.6-3_armhf.ddeb d866dad22da5587f63d3496b1a884cc2ae353b6885930ff3ab948478037628ed 1966400 mira-assembler_4.9.6-3_armhf.deb 3474e52f7af26af704f4067f10e9626b70e1d96131d17ee127d00b88aad443b7 6354 mira_4.9.6-3_armhf.buildinfo Files: dd69dada0e572d445bb6a4aa8c6149e0 24110458 debug extra mira-assembler-dbgsym_4.9.6-3_armhf.ddeb e200a7ab3cfaae43ff041c616c9eca20 1966400 science optional mira-assembler_4.9.6-3_armhf.deb d2de3acd48f8977ca0da953fe9ca9051 6354 science optional mira_4.9.6-3_armhf.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mira-assembler_4.9.6-3_armhf.deb -------------------------------- new debian package, version 2.0. size 1966400 bytes: control archive=2076 bytes. 1712 bytes, 33 lines control 2357 bytes, 29 lines md5sums Package: mira-assembler Source: mira Version: 4.9.6-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4935 Depends: libboost-filesystem1.62.0, libboost-regex1.62.0, libboost-system1.62.0, libboost-thread1.62.0, libc6 (>= 2.4), libexpat1 (>= 2.0.1), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6) Recommends: mira-rfam-12s-rrna Suggests: mira-doc Section: science Priority: optional Homepage: http://chevreux.org/projects_mira.html Description: Whole Genome Shotgun and EST Sequence Assembler The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof. . The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. . The package provides the following executables: Binaries provided: * mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. * mirabait: a "grep" like tool to select reads with kmers up to 256 bases. * miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files. drwxr-xr-x root/root 0 2017-06-12 22:29 ./ drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/ drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/bin/ -rwxr-xr-x root/root 4907800 2017-06-12 22:29 ./usr/bin/mira lrwxrwxrwx root/root 0 2017-06-12 22:29 ./usr/bin/mirabait -> mira lrwxrwxrwx root/root 0 2017-06-12 22:29 ./usr/bin/miraconvert -> mira lrwxrwxrwx root/root 0 2017-06-12 22:29 ./usr/bin/miramem -> mira lrwxrwxrwx root/root 0 2017-06-12 22:29 ./usr/bin/miramer -> mira drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/ drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/doc/mira-assembler/ -rw-r--r-- root/root 1384 2016-05-01 15:18 ./usr/share/doc/mira-assembler/HELP_WANTED -rw-r--r-- root/root 263 2016-05-01 15:18 ./usr/share/doc/mira-assembler/NEWS.gz -rw-r--r-- root/root 2691 2016-05-01 15:18 ./usr/share/doc/mira-assembler/README -rw-r--r-- root/root 180 2017-06-12 22:29 ./usr/share/doc/mira-assembler/README.test -rw-r--r-- root/root 3929 2016-05-01 15:18 ./usr/share/doc/mira-assembler/THANKS -rw-r--r-- root/root 1213 2017-06-12 22:29 ./usr/share/doc/mira-assembler/changelog.Debian.gz -rw-r--r-- root/root 2400 2017-06-12 22:29 ./usr/share/doc/mira-assembler/copyright -rw-r--r-- root/root 135 2017-06-12 22:29 ./usr/share/doc/mira-assembler/est_assembly.conf -rw-r--r-- root/root 415 2017-06-12 22:29 ./usr/share/doc/mira-assembler/run-unit-test -rw-r--r-- root/root 1533 2017-06-12 22:29 ./usr/share/doc/mira-assembler/solexa1.conf -rw-r--r-- root/root 219 2017-06-12 22:29 ./usr/share/doc/mira-assembler/solexa2.conf drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/ drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/fasta_estset1/ -rw-r--r-- root/root 1159 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.gz -rw-r--r-- root/root 3572 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual.gz drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ -rw-r--r-- root/root 4982 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf.gz -rw-r--r-- root/root 29260 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.gz -rw-r--r-- root/root 14391 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual.gz -rw-r--r-- root/root 11879 2017-06-12 22:29 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt.gz drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 147 2017-06-12 22:29 ./usr/share/lintian/overrides/mira-assembler drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/man/ drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/man/man1/ -rw-r--r-- root/root 1140 2017-06-12 22:29 ./usr/share/man/man1/mira.1.gz -rw-r--r-- root/root 2649 2017-06-12 22:29 ./usr/share/man/man1/mirabait.1.gz -rw-r--r-- root/root 3577 2017-06-12 22:29 ./usr/share/man/man1/miraconvert.1.gz -rw-r--r-- root/root 568 2017-06-12 22:29 ./usr/share/man/man1/miradiff.1.gz -rw-r--r-- root/root 761 2017-06-12 22:29 ./usr/share/man/man1/miramem.1.gz -rw-r--r-- root/root 566 2017-06-12 22:29 ./usr/share/man/man1/miramer.1.gz drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/mira/ drwxr-xr-x root/root 0 2017-06-12 22:29 ./usr/share/mira/support_3rdparty_tools/ -rw-r--r-- root/root 2571 2017-06-12 22:29 ./usr/share/mira/support_3rdparty_tools/GTAGDB -rw-r--r-- root/root 735 2017-06-12 22:29 ./usr/share/mira/support_3rdparty_tools/README -rw-r--r-- root/root 58 2017-06-12 22:29 ./usr/share/mira/support_3rdparty_tools/consedrc.13.0 -rw-r--r-- root/root 762 2017-06-12 22:29 ./usr/share/mira/support_3rdparty_tools/consedtaglib.txt +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 499720 Build-Time: 725 Distribution: artful-proposed Host Architecture: armhf Install-Time: 30 Job: mira_4.9.6-3.dsc Machine Architecture: arm64 Package: mira Package-Time: 761 Source-Version: 4.9.6-3 Space: 499720 Status: successful Version: 4.9.6-3 -------------------------------------------------------------------------------- Finished at 20170614-1729 Build needed 00:12:41, 499720k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12747610'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12747610/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12747610'] Unmounting chroot for build PACKAGEBUILD-12747610... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12747610'] Removing build PACKAGEBUILD-12747610