https://launchpad.net/ubuntu/+source/molmodel/3.0.113.gd05a5b6-1/+build/22457770 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-069 5.4.0-104-generic #118-Ubuntu SMP Wed Mar 2 19:03:41 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_209~536~ubuntu20.04.1 python3-lpbuildd_209~536~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 9 Mar 21:45:22 ntpdate[1669]: adjust time server 10.211.37.1 offset 0.001229 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22457770 --image-type chroot /home/buildd/filecache-default/d7d0133902b8cc1df688a841d4b96e994eeac2e0 Creating target for build PACKAGEBUILD-22457770 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22457770 Starting target for build PACKAGEBUILD-22457770 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22457770 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22457770 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22457770 Updating target for build PACKAGEBUILD-22457770 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 Packages [1380 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe arm64 Packages [13.4 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5644 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 Packages [65.5 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [22.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 Packages [318 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [139 kB] Fetched 22.1 MB in 5s (4140 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: gcc-12-base libperl5.34 libsemanage2 libsepol2 libssl3 perl-modules-5.34 The following packages will be upgraded: apt base-files bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils bzip2 ca-certificates coreutils cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libprocps8 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata usrmerge util-linux 135 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 101 MB of archives. After this operation, 332 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main arm64 libcrypt-dev arm64 1:4.4.27-1 [119 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main arm64 libc6-dev arm64 2.35-0ubuntu3 [1544 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main arm64 libc-dev-bin arm64 2.35-0ubuntu3 [19.6 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main arm64 libaudit-common all 1:3.0.7-1 [4782 B] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 libcap-ng0 arm64 0.7.9-2.2build3 [11.2 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main arm64 libaudit1 arm64 1:3.0.7-1 [46.2 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main arm64 libc6 arm64 2.35-0ubuntu3 [2707 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main arm64 libc-bin arm64 2.35-0ubuntu3 [600 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main arm64 perl-modules-5.34 all 5.34.0-3ubuntu1 [2975 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main arm64 libperl5.34 arm64 5.34.0-3ubuntu1 [4700 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main arm64 perl arm64 5.34.0-3ubuntu1 [232 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main arm64 perl-base arm64 5.34.0-3ubuntu1 [1707 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main arm64 bzip2 arm64 1.0.8-5 [34.5 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main arm64 libbz2-1.0 arm64 1.0.8-5 [36.0 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main arm64 libgdbm6 arm64 1.23-1 [34.1 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main arm64 libgdbm-compat4 arm64 1.23-1 [6294 B] Get:17 http://ftpmaster.internal/ubuntu jammy/main arm64 debconf all 1.5.79ubuntu1 [126 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main arm64 libpam0g arm64 1.4.0-11ubuntu1 [60.8 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main arm64 libcrypt1 arm64 1:4.4.27-1 [86.8 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main arm64 linux-libc-dev arm64 5.15.0-22.22 [1241 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-12-base arm64 12-20220302-1ubuntu1 [18.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcc-s1 arm64 12-20220302-1ubuntu1 [39.7 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main arm64 base-files arm64 12ubuntu2 [63.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main arm64 debianutils arm64 5.5-1ubuntu1 [106 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main arm64 bash arm64 5.1-6ubuntu1 [762 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main arm64 bsdutils arm64 1:2.37.2-4ubuntu3 [84.8 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main arm64 coreutils arm64 8.32-4.1ubuntu1 [1398 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main arm64 libgpg-error0 arm64 1.43-3 [69.4 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcrypt20 arm64 1.9.4-3ubuntu2 [456 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main arm64 libstdc++6 arm64 12-20220302-1ubuntu1 [666 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main arm64 libssl3 arm64 3.0.1-0ubuntu1 [1767 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main arm64 libargon2-1 arm64 0~20171227-0.3 [18.6 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main arm64 libblkid1 arm64 2.37.2-4ubuntu3 [103 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre2-8-0 arm64 10.39-3 [201 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main arm64 libselinux1 arm64 3.3-1build1 [74.3 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libudev1 arm64 249.10-0ubuntu2 [75.0 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main arm64 libdevmapper1.02.1 arm64 2:1.02.175-2.1ubuntu4 [129 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main arm64 libuuid1 arm64 2.37.2-4ubuntu3 [24.1 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main arm64 libcryptsetup12 arm64 2:2.4.3-1ubuntu1 [208 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main arm64 libgmp10 arm64 2:6.2.1+dfsg-3ubuntu1 [240 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main arm64 libunistring2 arm64 1.0-1 [544 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main arm64 libidn2-0 arm64 2.3.2-2 [67.1 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main arm64 libffi8 arm64 3.4.2-4 [21.3 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main arm64 libp11-kit0 arm64 0.24.0-6 [231 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main arm64 libtasn1-6 arm64 4.18.0-4 [42.6 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main arm64 libgnutls30 arm64 3.7.3-4ubuntu1 [923 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 systemd-sysv arm64 249.10-0ubuntu2 [10.5 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 systemd-timesyncd arm64 249.10-0ubuntu2 [29.9 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main arm64 libacl1 arm64 2.3.1-1 [16.1 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main arm64 libapparmor1 arm64 3.0.4-2ubuntu1 [38.3 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main arm64 libip4tc2 arm64 1.8.7-1ubuntu4 [19.8 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main arm64 libzstd1 arm64 1.4.8+dfsg-3 [311 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main arm64 libkmod2 arm64 29-1ubuntu1 [46.4 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main arm64 libmount1 arm64 2.37.2-4ubuntu3 [120 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main arm64 libseccomp2 arm64 2.5.3-2ubuntu1 [47.7 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main arm64 login arm64 1:4.8.1-2ubuntu1 [186 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main arm64 util-linux arm64 2.37.2-4ubuntu3 [1058 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main arm64 mount arm64 2.37.2-4ubuntu3 [113 kB] Get:59 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 systemd arm64 249.10-0ubuntu2 [4392 kB] Get:60 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsystemd0 arm64 249.10-0ubuntu2 [314 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main arm64 libxxhash0 arm64 0.8.1-1 [20.1 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main arm64 libapt-pkg6.0 arm64 2.4.1 [865 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main arm64 dpkg arm64 1.21.1ubuntu1 [1235 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main arm64 dash arm64 0.5.11+git20210903+057cd650a4ed-3 [91.7 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main arm64 grep arm64 3.7-1 [152 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main arm64 libncurses6 arm64 6.3-2 [106 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main arm64 libncursesw6 arm64 6.3-2 [142 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main arm64 libtinfo6 arm64 6.3-2 [103 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main arm64 ncurses-bin arm64 6.3-2 [183 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main arm64 sed arm64 4.8-1ubuntu1 [186 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main arm64 init-system-helpers all 1.62 [38.5 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main arm64 ncurses-base all 6.3-2 [20.1 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main arm64 sysvinit-utils arm64 3.01-1ubuntu1 [20.3 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main arm64 gpgv arm64 2.2.27-3ubuntu1 [133 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main arm64 apt arm64 2.4.1 [1343 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main arm64 libsepol2 arm64 3.3-1 [274 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main arm64 libsemanage-common all 3.3-1build1 [10.0 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main arm64 libsemanage2 arm64 3.3-1build1 [89.4 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main arm64 passwd arm64 1:4.8.1-2ubuntu1 [761 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main arm64 libpam-modules-bin arm64 1.4.0-11ubuntu1 [38.6 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main arm64 libpam-modules arm64 1.4.0-11ubuntu1 [278 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main arm64 logsave arm64 1.46.5-2ubuntu1 [10.5 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main arm64 libext2fs2 arm64 1.46.5-2ubuntu1 [212 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main arm64 e2fsprogs arm64 1.46.5-2ubuntu1 [587 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main arm64 init arm64 1.62 [5412 B] Get:86 http://ftpmaster.internal/ubuntu jammy/main arm64 libattr1 arm64 1:2.5.1-1 [13.3 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main arm64 libcom-err2 arm64 1.46.5-2ubuntu1 [9728 B] Get:88 http://ftpmaster.internal/ubuntu jammy/main arm64 libdebconfclient0 arm64 0.261ubuntu1 [7080 B] Get:89 http://ftpmaster.internal/ubuntu jammy/main arm64 libk5crypto3 arm64 1.19.2-2 [91.6 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main arm64 libkrb5support0 arm64 1.19.2-2 [32.3 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main arm64 libkrb5-3 arm64 1.19.2-2 [356 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main arm64 libgssapi-krb5-2 arm64 1.19.2-2 [142 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main arm64 libkeyutils1 arm64 1.6.1-2ubuntu3 [10.1 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main arm64 libpam-runtime all 1.4.0-11ubuntu1 [40.2 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main arm64 libsmartcols1 arm64 2.37.2-4ubuntu3 [49.8 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main arm64 libtsan0 arm64 11.2.0-18ubuntu1 [2235 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main arm64 libgomp1 arm64 12-20220302-1ubuntu1 [124 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main arm64 libitm1 arm64 12-20220302-1ubuntu1 [28.4 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main arm64 libatomic1 arm64 12-20220302-1ubuntu1 [10.8 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main arm64 libasan6 arm64 11.2.0-18ubuntu1 [2229 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main arm64 liblsan0 arm64 12-20220302-1ubuntu1 [1034 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main arm64 libubsan1 arm64 12-20220302-1ubuntu1 [964 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main arm64 libhwasan0 arm64 12-20220302-1ubuntu1 [1118 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main arm64 g++-11 arm64 11.2.0-18ubuntu1 [11.1 MB] Get:105 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-11 arm64 11.2.0-18ubuntu1 [19.5 MB] Get:106 http://ftpmaster.internal/ubuntu jammy/main arm64 libstdc++-11-dev arm64 11.2.0-18ubuntu1 [2070 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcc-11-dev arm64 11.2.0-18ubuntu1 [1151 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main arm64 libisl23 arm64 0.24-2 [690 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main arm64 libmpc3 arm64 1.2.1-1 [48.1 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main arm64 libcc1-0 arm64 12-20220302-1ubuntu1 [45.0 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main arm64 libctf0 arm64 2.38-2ubuntu1 [102 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main arm64 libctf-nobfd0 arm64 2.38-2ubuntu1 [106 kB] Get:113 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils-aarch64-linux-gnu arm64 2.38-2ubuntu1 [3234 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main arm64 libbinutils arm64 2.38-2ubuntu1 [825 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils arm64 2.38-2ubuntu1 [3162 B] Get:116 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils-common arm64 2.38-2ubuntu1 [221 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main arm64 cpp-11 arm64 11.2.0-18ubuntu1 [9699 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-11-base arm64 11.2.0-18ubuntu1 [21.1 kB] Get:119 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libprocps8 arm64 2:3.3.17-6ubuntu2 [35.0 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main arm64 libss2 arm64 1.46.5-2ubuntu1 [11.9 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main arm64 mawk arm64 1.3.4.20200120-3 [101 kB] Get:122 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 procps arm64 2:3.3.17-6ubuntu2 [382 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main arm64 sensible-utils all 0.0.17 [20.1 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main arm64 usrmerge all 25ubuntu2 [54.7 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main arm64 openssl arm64 3.0.1-0ubuntu1 [1157 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main arm64 ca-certificates all 20211016 [148 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main arm64 readline-common all 8.1.2-1 [53.5 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main arm64 libreadline8 arm64 8.1.2-1 [153 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main arm64 libsqlite3-0 arm64 3.37.2-2 [636 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main arm64 tzdata all 2021e-1ubuntu1 [343 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main arm64 dpkg-dev all 1.21.1ubuntu1 [922 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main arm64 libdpkg-perl all 1.21.1ubuntu1 [236 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/main arm64 make arm64 4.3-4.1build1 [177 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main arm64 lto-disabled-list all 23 [12.5 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main arm64 libfakeroot arm64 1.28-1ubuntu1 [31.5 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main arm64 fakeroot arm64 1.28-1ubuntu1 [60.5 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main arm64 gpg arm64 2.2.27-3ubuntu1 [507 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main arm64 gpgconf arm64 2.2.27-3ubuntu1 [92.4 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main arm64 gpg-agent arm64 2.2.27-3ubuntu1 [204 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main arm64 lockfile-progs arm64 0.1.19 [9778 B] Get:141 http://ftpmaster.internal/ubuntu jammy/main arm64 pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 101 MB in 2s (52.6 MB/s) (Reading database ... 13240 files and directories currently installed.) 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Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up libgdbm-compat4:arm64 (1.23-1) ... Setting up libgcc-11-dev:arm64 (11.2.0-18ubuntu1) ... Setting up gcc-11 (11.2.0-18ubuntu1) ... Setting up procps (2:3.3.17-6ubuntu2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.d/README.sysctl ... Setting up gpgconf (2.2.27-3ubuntu1) ... Setting up libc6-dev:arm64 (2.35-0ubuntu3) ... Setting up gpg (2.2.27-3ubuntu1) ... Setting up libperl5.34:arm64 (5.34.0-3ubuntu1) ... Setting up gpg-agent (2.2.27-3ubuntu1) ... Setting up perl (5.34.0-3ubuntu1) ... Setting up libdpkg-perl (1.21.1ubuntu1) ... Setting up libstdc++-11-dev:arm64 (11.2.0-18ubuntu1) ... Setting up g++-11 (11.2.0-18ubuntu1) ... Setting up dpkg-dev (1.21.1ubuntu1) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22457770 arm64 jammy-proposed -c chroot:build-PACKAGEBUILD-22457770 --arch=arm64 --dist=jammy-proposed --nolog molmodel_3.0.113.gd05a5b6-1.dsc Initiating build PACKAGEBUILD-22457770 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-104-generic #118-Ubuntu SMP Wed Mar 2 19:03:41 UTC 2022 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-069.buildd +==============================================================================+ | molmodel 3.0.113.gd05a5b6-1 (arm64) Wed, 09 Mar 2022 21:46:28 +0000 | +==============================================================================+ Package: molmodel Version: 3.0.113.gd05a5b6-1 Source Version: 3.0.113.gd05a5b6-1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22457770/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/molmodel-kSIHax/resolver-NRie5C' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- molmodel_3.0.113.gd05a5b6-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/molmodel-kSIHax/molmodel-3.0.113.gd05a5b6' with '<>' I: NOTICE: Log filtering will replace 'build/molmodel-kSIHax' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [409 B] Get:5 copy:/<>/apt_archive ./ Packages [489 B] Fetched 1855 B in 0s (59.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file freeglut3 freeglut3-dev gemmi-dev gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libblas-dev libblas3 libbrotli1 libbsd0 libcurl4 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgbm1 libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libice-dev libice6 libicu70 libjsoncpp25 liblapack-dev liblapack3 libldap-2.5-0 libllvm12 libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev libnghttp2-14 libopengl-dev libopengl0 libpipeline1 libpsl5 libpthread-stubs0-dev librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsimbody-dev libsimbody3.6 libsm-dev libsm6 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libvulkan1 libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi-dev libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxshmfence1 libxt-dev libxt6 libxxf86vm1 m4 man-db po-debconf tao-pegtl-dev x11-common x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cmake-format dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip liblapack-doc libice-doc lm-sensors libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file freeglut3 freeglut3-dev gemmi-dev gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libblas-dev libblas3 libbrotli1 libbsd0 libcurl4 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgbm1 libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libice-dev libice6 libicu70 libjsoncpp25 liblapack-dev liblapack3 libldap-2.5-0 libllvm12 libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev libnghttp2-14 libopengl-dev libopengl0 libpipeline1 libpsl5 libpthread-stubs0-dev librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsimbody-dev libsimbody3.6 libsm-dev libsm6 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libvulkan1 libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi-dev libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxshmfence1 libxt-dev libxt6 libxxf86vm1 m4 man-db po-debconf sbuild-build-depends-main-dummy tao-pegtl-dev x11-common x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 140 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [716 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main arm64 libmd0 arm64 1.0.4-1 [23.8 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main arm64 libbsd0 arm64 0.11.5-1 [43.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main arm64 libelf1 arm64 0.186-1 [51.1 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 libexpat1 arm64 2.4.6-1 [76.7 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main arm64 libicu70 arm64 70.1-2 [10.5 MB] Get:7 http://ftpmaster.internal/ubuntu jammy/main arm64 libxml2 arm64 2.9.13+dfsg-1 [728 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main arm64 bsdextrautils arm64 2.37.2-4ubuntu3 [70.1 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main arm64 libmagic-mgc arm64 1:5.41-2 [257 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main arm64 libmagic1 arm64 1:5.41-2 [84.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main arm64 file arm64 1:5.41-2 [21.6 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main arm64 gettext-base arm64 0.21-4ubuntu3 [35.2 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main arm64 libuchardet0 arm64 0.0.7-1build1 [76.8 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main arm64 groff-base arm64 1.22.4-8 [917 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main arm64 libdrm-common all 2.4.109-2ubuntu1 [5316 B] Get:16 http://ftpmaster.internal/ubuntu jammy/main arm64 libdrm2 arm64 2.4.109-2ubuntu1 [38.7 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main arm64 libedit2 arm64 3.1-20210910-1 [95.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main arm64 libpipeline1 arm64 1.5.5-1 [23.2 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main arm64 libpsl5 arm64 0.21.0-1.2build1 [57.5 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main arm64 libuv1 arm64 1.43.0-1 [89.9 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main arm64 libxau6 arm64 1:1.0.9-1build4 [7638 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu4 [10.9 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb1 arm64 1.14-3ubuntu2 [49.1 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main arm64 libx11-data all 2:1.7.2-2 [123 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main arm64 libx11-6 arm64 2:1.7.2-2 [659 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main arm64 libxext6 arm64 2:1.3.4-1 [31.1 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main arm64 man-db arm64 2.10.1-1 [1180 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main arm64 libsigsegv2 arm64 2.13-1ubuntu2 [14.5 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main arm64 m4 arm64 1.4.18-5ubuntu1 [196 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main arm64 autoconf all 2.71-2 [338 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 automake all 1:1.16.5-1.1ubuntu2 [558 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main arm64 autopoint all 0.21-4ubuntu3 [422 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main arm64 libarchive13 arm64 3.5.2-1ubuntu1 [363 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main arm64 libbrotli1 arm64 1.0.9-2build4 [314 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg2-3ubuntu1 [21.3 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main arm64 libsasl2-2 arm64 2.1.27+dfsg2-3ubuntu1 [55.6 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main arm64 libldap-2.5-0 arm64 2.5.11+dfsg-1~exp1ubuntu3 [181 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main arm64 libnghttp2-14 arm64 1.43.0-1build2 [75.3 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build3 [59.3 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main arm64 libssh-4 arm64 0.9.6-2 [184 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main arm64 libcurl4 arm64 7.81.0-1 [283 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main arm64 libjsoncpp25 arm64 1.9.5-3 [76.6 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main arm64 librhash0 arm64 1.4.2-1ubuntu1 [125 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main arm64 dh-elpa-helper all 2.0.9ubuntu1 [7610 B] Get:46 http://ftpmaster.internal/ubuntu jammy/main arm64 emacsen-common all 3.0.4 [14.9 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main arm64 cmake-data all 3.22.1-1ubuntu1 [1912 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main arm64 cmake arm64 3.22.1-1ubuntu1 [4650 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main arm64 libdebhelper-perl all 13.6ubuntu1 [67.2 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main arm64 libtool all 2.4.6-15build1 [164 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main arm64 dh-autoreconf all 20 [16.1 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:54 http://ftpmaster.internal/ubuntu jammy/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main arm64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:56 http://ftpmaster.internal/ubuntu jammy/main arm64 libdw1 arm64 0.186-1 [246 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main arm64 debugedit arm64 1:5.0-4 [46.4 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main arm64 dwz arm64 0.14-1build1 [102 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main arm64 gettext arm64 0.21-4ubuntu3 [775 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main arm64 debhelper all 13.6ubuntu1 [923 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main arm64 libglvnd0 arm64 1.4.0-1 [61.0 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main arm64 libglapi-mesa arm64 21.3.5-1ubuntu1 [67.0 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main arm64 libx11-xcb1 arm64 2:1.7.2-2 [7828 B] Get:66 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-dri2-0 arm64 1.14-3ubuntu2 [7260 B] Get:67 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-dri3-0 arm64 1.14-3ubuntu2 [6882 B] Get:68 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-glx0 arm64 1.14-3ubuntu2 [26.0 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-present0 arm64 1.14-3ubuntu2 [5728 B] Get:70 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-shm0 arm64 1.14-3ubuntu2 [5862 B] Get:71 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-sync1 arm64 1.14-3ubuntu2 [9336 B] Get:72 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-xfixes0 arm64 1.14-3ubuntu2 [10.0 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main arm64 libxfixes3 arm64 1:6.0.0-1 [11.4 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main arm64 libxshmfence1 arm64 1.3-1build3 [5372 B] Get:75 http://ftpmaster.internal/ubuntu jammy/main arm64 libxxf86vm1 arm64 1:1.1.4-1build2 [10.5 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main arm64 libdrm-amdgpu1 arm64 2.4.109-2ubuntu1 [19.7 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main arm64 libdrm-nouveau2 arm64 2.4.109-2ubuntu1 [17.3 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main arm64 libdrm-radeon1 arm64 2.4.109-2ubuntu1 [21.2 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main arm64 libllvm12 arm64 1:12.0.1-19ubuntu3 [19.6 MB] Get:80 http://ftpmaster.internal/ubuntu jammy/main arm64 libsensors-config all 1:3.6.0-7build1 [5364 B] Get:81 http://ftpmaster.internal/ubuntu jammy/main arm64 libsensors5 arm64 1:3.6.0-7build1 [26.2 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main arm64 libvulkan1 arm64 1.3.204.0-1 [136 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main arm64 libgl1-mesa-dri arm64 21.3.5-1ubuntu1 [9020 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main arm64 libglx-mesa0 arm64 21.3.5-1ubuntu1 [163 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main arm64 libglx0 arm64 1.4.0-1 [37.1 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main arm64 libgl1 arm64 1.4.0-1 [114 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main arm64 libxi6 arm64 2:1.8-1 [31.6 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/universe arm64 freeglut3 arm64 2.8.1-6 [68.7 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main arm64 x11proto-dev all 2021.5-1 [604 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main arm64 libxau-dev arm64 1:1.0.9-1build4 [10.1 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main arm64 libxdmcp-dev arm64 1:1.1.3-0ubuntu4 [26.4 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main arm64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main arm64 libpthread-stubs0-dev arm64 0.4-1build1 [5440 B] Get:95 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb1-dev arm64 1.14-3ubuntu2 [90.3 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main arm64 libx11-dev arm64 2:1.7.2-2 [744 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main arm64 libglx-dev arm64 1.4.0-1 [14.1 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main arm64 libgl-dev arm64 1.4.0-1 [102 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main arm64 libglvnd-core-dev arm64 1.4.0-1 [12.7 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main arm64 libwayland-server0 arm64 1.20.0-1 [34.0 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main arm64 libgbm1 arm64 21.3.5-1ubuntu1 [30.9 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main arm64 libwayland-client0 arm64 1.20.0-1 [25.2 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main arm64 libegl-mesa0 arm64 21.3.5-1ubuntu1 [104 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main arm64 libegl1 arm64 1.4.0-1 [28.8 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main arm64 libegl-dev arm64 1.4.0-1 [18.0 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main arm64 libgles1 arm64 1.4.0-1 [11.8 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main arm64 libgles2 arm64 1.4.0-1 [18.8 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main arm64 libgles-dev arm64 1.4.0-1 [49.4 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main arm64 libopengl0 arm64 1.4.0-1 [38.6 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main arm64 libopengl-dev arm64 1.4.0-1 [3400 B] Get:111 http://ftpmaster.internal/ubuntu jammy/main arm64 libglvnd-dev arm64 1.4.0-1 [3164 B] Get:112 http://ftpmaster.internal/ubuntu jammy/main arm64 libgl1-mesa-dev arm64 21.3.5-1ubuntu1 [6386 B] Get:113 http://ftpmaster.internal/ubuntu jammy/main arm64 libglu1-mesa arm64 9.0.1-1build2 [132 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main arm64 libglu1-mesa-dev arm64 9.0.1-1build2 [218 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main arm64 libxext-dev arm64 2:1.3.4-1 [85.5 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main arm64 x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main arm64 libice6 arm64 2:1.0.10-1build1 [41.8 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main arm64 libsm6 arm64 2:1.2.3-1build1 [16.3 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main arm64 libxt6 arm64 1:1.2.1-1 [171 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main arm64 libice-dev arm64 2:1.0.10-1build1 [52.1 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main arm64 libsm-dev arm64 2:1.2.3-1build1 [18.2 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main arm64 libxt-dev arm64 1:1.2.1-1 [403 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/universe arm64 freeglut3-dev arm64 2.8.1-6 [123 kB] Get:124 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 gemmi-dev arm64 0.5.2+ds-1ubuntu1 [402 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main arm64 libblas3 arm64 3.10.0-2ubuntu1 [141 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main arm64 libblas-dev arm64 3.10.0-2ubuntu1 [110 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main arm64 libgfortran5 arm64 12-20220302-1ubuntu1 [417 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main arm64 liblapack3 arm64 3.10.0-2ubuntu1 [2009 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main arm64 liblapack-dev arm64 3.10.0-2ubuntu1 [3386 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/universe arm64 libmmdb2-0 arm64 2.0.20-1 [355 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/universe arm64 libmmdb2-dev arm64 2.0.20-1 [93.1 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/universe arm64 libsimbody3.6 arm64 3.6.1+dfsg-7build1 [2707 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/main arm64 libxfixes-dev arm64 1:6.0.0-1 [12.5 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main arm64 libxi-dev arm64 2:1.8-1 [192 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main arm64 libxmu-headers all 2:1.1.3-3 [54.1 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main arm64 libxmu-dev arm64 2:1.1.3-3 [55.7 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/universe arm64 tao-pegtl-dev all 2.8.3-3 [49.9 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2ubuntu7 [163 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/universe arm64 libsimbody-dev arm64 3.6.1+dfsg-7build1 [2718 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.6 MB in 3s (28.5 MB/s) Selecting previously unselected package libmd0:arm64. (Reading database ... 15366 files and directories currently installed.) Preparing to unpack .../000-libmd0_1.0.4-1_arm64.deb ... Unpacking libmd0:arm64 (1.0.4-1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../001-libbsd0_0.11.5-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.5-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../002-libelf1_0.186-1_arm64.deb ... Unpacking libelf1:arm64 (0.186-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../003-libexpat1_2.4.6-1_arm64.deb ... Unpacking libexpat1:arm64 (2.4.6-1) ... Selecting previously unselected package libicu70:arm64. Preparing to unpack .../004-libicu70_70.1-2_arm64.deb ... Unpacking libicu70:arm64 (70.1-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../005-libxml2_2.9.13+dfsg-1_arm64.deb ... Unpacking libxml2:arm64 (2.9.13+dfsg-1) ... Selecting previously unselected package bsdextrautils. 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Selecting previously unselected package libsimbody-dev:arm64. Preparing to unpack .../138-libsimbody-dev_3.6.1+dfsg-7build1_arm64.deb ... Unpacking libsimbody-dev:arm64 (3.6.1+dfsg-7build1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../139-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:arm64 (2.4.6-1) ... Setting up libpipeline1:arm64 (1.5.5-1) ... Setting up libwayland-server0:arm64 (1.20.0-1) ... Setting up libxau6:arm64 (1:1.0.9-1build4) ... Setting up libpsl5:arm64 (0.21.0-1.2build1) ... Setting up bsdextrautils (2.37.2-4ubuntu3) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libglvnd-core-dev:arm64 (1.4.0-1) ... Setting up libmmdb2-0:arm64 (2.0.20-1) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:arm64 (1.4.0-1) ... Setting up libdebhelper-perl (13.6ubuntu1) ... Setting up libbrotli1:arm64 (1.0.9-2build4) ... Setting up gemmi-dev (0.5.2+ds-1ubuntu1) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7build1) ... Setting up libnghttp2-14:arm64 (1.43.0-1build2) ... Setting up libmagic1:arm64 (1:5.41-2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.41-2) ... Setting up libpthread-stubs0-dev:arm64 (0.4-1build1) ... Setting up libopengl0:arm64 (1.4.0-1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg2-3ubuntu1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libuv1:arm64 (1.43.0-1) ... Setting up libgles2:arm64 (1.4.0-1) ... Setting up emacsen-common (3.0.4) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build3) ... Setting up dh-elpa-helper (2.0.9ubuntu1) ... Setting up libgles1:arm64 (1.4.0-1) ... Setting up libsigsegv2:arm64 (2.13-1ubuntu2) ... Setting up libmmdb2-dev (2.0.20-1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libjsoncpp25:arm64 (1.9.5-3) ... Setting up libsensors5:arm64 (1:3.6.0-7build1) ... Setting up libglapi-mesa:arm64 (21.3.5-1ubuntu1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg2-3ubuntu1) ... Setting up libssh-4:arm64 (0.9.6-2) ... Setting up libgfortran5:arm64 (12-20220302-1ubuntu1) ... Setting up libvulkan1:arm64 (1.3.204.0-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up libmd0:arm64 (1.0.4-1) ... Setting up libxshmfence1:arm64 (1.3-1build3) ... Setting up librhash0:arm64 (1.4.2-1ubuntu1) ... Setting up libuchardet0:arm64 (0.0.7-1build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up cmake-data (3.22.1-1ubuntu1) ... Setting up libopengl-dev:arm64 (1.4.0-1) ... Setting up libbsd0:arm64 (0.11.5-1) ... Setting up libdrm-common (2.4.109-2ubuntu1) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libblas-dev:arm64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up tao-pegtl-dev (2.8.3-3) ... Setting up libicu70:arm64 (70.1-2) ... Setting up libwayland-client0:arm64 (1.20.0-1) ... Setting up x11proto-dev (2021.5-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libice6:arm64 (2:1.0.10-1build1) ... Setting up libdw1:arm64 (0.186-1) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu4) ... Setting up liblapack3:arm64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3ubuntu2) ... Setting up libxcb-xfixes0:arm64 (1.14-3ubuntu2) ... Setting up libxau-dev:arm64 (1:1.0.9-1build4) ... Setting up libice-dev:arm64 (2:1.0.10-1build1) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-glx0:arm64 (1.14-3ubuntu2) ... Setting up libedit2:arm64 (3.1-20210910-1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:arm64 (1.14-3ubuntu2) ... Setting up libldap-2.5-0:arm64 (2.5.11+dfsg-1~exp1ubuntu3) ... Setting up libxcb-present0:arm64 (1.14-3ubuntu2) ... Setting up libxdmcp-dev:arm64 (1:1.1.3-0ubuntu4) ... Setting up libxcb-sync1:arm64 (1.14-3ubuntu2) ... Setting up liblapack-dev:arm64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up autoconf (2.71-2) ... Setting up libxcb-dri2-0:arm64 (1.14-3ubuntu2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libdrm2:arm64 (2.4.109-2ubuntu1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-8) ... Setting up debugedit (1:5.0-4) ... Setting up libcurl4:arm64 (7.81.0-1) ... Setting up libx11-6:arm64 (2:1.7.2-2) ... Setting up libsm6:arm64 (2:1.2.3-1build1) ... Setting up libxml2:arm64 (2.9.13+dfsg-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.109-2ubuntu1) ... Setting up automake (1:1.16.5-1.1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:arm64 (1.14-3ubuntu2) ... Setting up libx11-xcb1:arm64 (2:1.7.2-2) ... Setting up libdrm-nouveau2:arm64 (2.4.109-2ubuntu1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libxcb1-dev:arm64 (1.14-3ubuntu2) ... Setting up libgbm1:arm64 (21.3.5-1ubuntu1) ... Setting up libarchive13:arm64 (3.5.2-1ubuntu1) ... Setting up libsm-dev:arm64 (2:1.2.3-1build1) ... Setting up libdrm-radeon1:arm64 (2.4.109-2ubuntu1) ... Setting up libx11-dev:arm64 (2:1.7.2-2) ... Setting up libxext6:arm64 (2:1.3.4-1) ... Setting up man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libxxf86vm1:arm64 (1:1.1.4-1build2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libegl-mesa0:arm64 (21.3.5-1ubuntu1) ... Setting up libxfixes3:arm64 (1:6.0.0-1) ... Setting up libllvm12:arm64 (1:12.0.1-19ubuntu3) ... Setting up libxt6:arm64 (1:1.2.1-1) ... Setting up libxext-dev:arm64 (2:1.3.4-1) ... Setting up libegl1:arm64 (1.4.0-1) ... Setting up cmake (3.22.1-1ubuntu1) ... Setting up libxmu-headers (2:1.1.3-3) ... Setting up libxmu6:arm64 (2:1.1.3-3) ... Setting up libxi6:arm64 (2:1.8-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libgl1-mesa-dri:arm64 (21.3.5-1ubuntu1) ... Setting up debhelper (13.6ubuntu1) ... Setting up libxfixes-dev:arm64 (1:6.0.0-1) ... Setting up libxt-dev:arm64 (1:1.2.1-1) ... Setting up libxi-dev:arm64 (2:1.8-1) ... Setting up libglx-mesa0:arm64 (21.3.5-1ubuntu1) ... Setting up libglx0:arm64 (1.4.0-1) ... Setting up libxmu-dev:arm64 (2:1.1.3-3) ... Setting up libgl1:arm64 (1.4.0-1) ... Setting up libglx-dev:arm64 (1.4.0-1) ... Setting up libglu1-mesa:arm64 (9.0.1-1build2) ... Setting up libgl-dev:arm64 (1.4.0-1) ... Setting up freeglut3:arm64 (2.8.1-6) ... Setting up libegl-dev:arm64 (1.4.0-1) ... Setting up libglu1-mesa-dev:arm64 (9.0.1-1build2) ... Setting up libsimbody3.6:arm64 (3.6.1+dfsg-7build1) ... Setting up libgles-dev:arm64 (1.4.0-1) ... Setting up libglvnd-dev:arm64 (1.4.0-1) ... Setting up libgl1-mesa-dev:arm64 (21.3.5-1ubuntu1) ... Setting up freeglut3-dev:arm64 (2.8.1-6) ... Setting up libsimbody-dev:arm64 (3.6.1+dfsg-7build1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-104-generic #118-Ubuntu SMP Wed Mar 2 19:03:41 UTC 2022 arm64 (aarch64) Toolchain package versions: binutils_2.38-2ubuntu1 dpkg-dev_1.21.1ubuntu1 g++-11_11.2.0-18ubuntu1 gcc-11_11.2.0-18ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.2.0-18ubuntu1 libstdc++6_12-20220302-1ubuntu1 linux-libc-dev_5.15.0-22.22 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.4.1 autoconf_2.71-2 automake_1:1.16.5-1.1ubuntu2 autopoint_0.21-4ubuntu3 autotools-dev_20220109.1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-6ubuntu1 binutils_2.38-2ubuntu1 binutils-aarch64-linux-gnu_2.38-2ubuntu1 binutils-common_2.38-2ubuntu1 bsdextrautils_2.37.2-4ubuntu3 bsdutils_1:2.37.2-4ubuntu3 build-essential_12.9ubuntu2 bzip2_1.0.8-5 ca-certificates_20211016 cmake_3.22.1-1ubuntu1 cmake-data_3.22.1-1ubuntu1 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-18ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79ubuntu1 debhelper_13.6ubuntu1 debianutils_5.5-1ubuntu1 debugedit_1:5.0-4 dh-autoreconf_20 dh-elpa-helper_2.0.9ubuntu1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.21.1ubuntu1 dpkg-dev_1.21.1ubuntu1 dwz_0.14-1build1 e2fsprogs_1.46.5-2ubuntu1 emacsen-common_3.0.4 fakeroot_1.28-1ubuntu1 file_1:5.41-2 findutils_4.8.0-1ubuntu2 freeglut3_2.8.1-6 freeglut3-dev_2.8.1-6 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-18ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-18ubuntu1 gcc-11-base_11.2.0-18ubuntu1 gcc-12-base_12-20220302-1ubuntu1 gemmi-dev_0.5.2+ds-1ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.27-3ubuntu1 gpg-agent_2.2.27-3ubuntu1 gpgconf_2.2.27-3ubuntu1 gpgv_2.2.27-3ubuntu1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.62 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.4-2ubuntu1 libapt-pkg6.0_2.4.1 libarchive-zip-perl_1.68-1 libarchive13_3.5.2-1ubuntu1 libargon2-1_0~20171227-0.3 libasan6_11.2.0-18ubuntu1 libassuan0_2.5.5-1 libatomic1_12-20220302-1ubuntu1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1 libbinutils_2.38-2ubuntu1 libblas-dev_3.10.0-2ubuntu1 libblas3_3.10.0-2ubuntu1 libblkid1_2.37.2-4ubuntu3 libbrotli1_1.0.9-2build4 libbsd0_0.11.5-1 libbz2-1.0_1.0.8-5 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcap-ng0_0.7.9-2.2build3 libcap2_1:2.44-1build2 libcc1-0_12-20220302-1ubuntu1 libcom-err2_1.46.5-2ubuntu1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38-2ubuntu1 libctf0_2.38-2ubuntu1 libcurl4_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.6ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.1ubuntu1 libdrm-amdgpu1_2.4.109-2ubuntu1 libdrm-common_2.4.109-2ubuntu1 libdrm-nouveau2_2.4.109-2ubuntu1 libdrm-radeon1_2.4.109-2ubuntu1 libdrm2_2.4.109-2ubuntu1 libdw1_0.186-1 libedit2_3.1-20210910-1 libegl-dev_1.4.0-1 libegl-mesa0_21.3.5-1ubuntu1 libegl1_1.4.0-1 libelf1_0.186-1 libexpat1_2.4.6-1 libext2fs2_1.46.5-2ubuntu1 libfakeroot_1.28-1ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgbm1_21.3.5-1ubuntu1 libgcc-11-dev_11.2.0-18ubuntu1 libgcc-s1_12-20220302-1ubuntu1 libgcrypt20_1.9.4-3ubuntu2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12-20220302-1ubuntu1 libgl-dev_1.4.0-1 libgl1_1.4.0-1 libgl1-mesa-dev_21.3.5-1ubuntu1 libgl1-mesa-dri_21.3.5-1ubuntu1 libglapi-mesa_21.3.5-1ubuntu1 libgles-dev_1.4.0-1 libgles1_1.4.0-1 libgles2_1.4.0-1 libglu1-mesa_9.0.1-1build2 libglu1-mesa-dev_9.0.1-1build2 libglvnd-core-dev_1.4.0-1 libglvnd-dev_1.4.0-1 libglvnd0_1.4.0-1 libglx-dev_1.4.0-1 libglx-mesa0_21.3.5-1ubuntu1 libglx0_1.4.0-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.3-4ubuntu1 libgomp1_12-20220302-1ubuntu1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.19.2-2 libhogweed6_3.7.3-1build1 libhwasan0_12-20220302-1ubuntu1 libice-dev_2:1.0.10-1build1 libice6_2:1.0.10-1build1 libicu70_70.1-2 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu4 libisl23_0.24-2 libitm1_12-20220302-1ubuntu1 libjson-c5_0.15-2build3 libjsoncpp25_1.9.5-3 libk5crypto3_1.19.2-2 libkeyutils1_1.6.1-2ubuntu3 libkmod2_29-1ubuntu1 libkrb5-3_1.19.2-2 libkrb5support0_1.19.2-2 liblapack-dev_3.10.0-2ubuntu1 liblapack3_3.10.0-2ubuntu1 libldap-2.5-0_2.5.11+dfsg-1~exp1ubuntu3 libllvm12_1:12.0.1-19ubuntu3 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblsan0_12-20220302-1ubuntu1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmmdb2-0_2.0.20-1 libmmdb2-dev_2.0.20-1 libmount1_2.37.2-4ubuntu3 libmpc3_1.2.1-1 libmpfr6_4.1.0-3build2 libncurses6_6.3-2 libncursesw6_6.3-2 libnettle8_3.7.3-1build1 libnghttp2-14_1.43.0-1build2 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libopengl-dev_1.4.0-1 libopengl0_1.4.0-1 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11ubuntu1 libpam-modules-bin_1.4.0-11ubuntu1 libpam-runtime_1.4.0-11ubuntu1 libpam0g_1.4.0-11ubuntu1 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libperl5.34_5.34.0-3ubuntu1 libpipeline1_1.5.5-1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-6ubuntu2 libpsl5_0.21.0-1.2build1 libpthread-stubs0-dev_0.4-1build1 libreadline8_8.1.2-1 librhash0_1.4.2-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-2build3 libsasl2-2_2.1.27+dfsg2-3ubuntu1 libsasl2-modules-db_2.1.27+dfsg2-3ubuntu1 libseccomp2_2.5.3-2ubuntu1 libselinux1_3.3-1build1 libsemanage-common_3.3-1build1 libsemanage2_3.3-1build1 libsensors-config_1:3.6.0-7build1 libsensors5_1:3.6.0-7build1 libsepol1_3.1-1ubuntu2 libsepol2_3.3-1 libsigsegv2_2.13-1ubuntu2 libsimbody-dev_3.6.1+dfsg-7build1 libsimbody3.6_3.6.1+dfsg-7build1 libsm-dev_2:1.2.3-1build1 libsm6_2:1.2.3-1build1 libsmartcols1_2.37.2-4ubuntu3 libsqlite3-0_3.37.2-2 libss2_1.46.5-2ubuntu1 libssh-4_0.9.6-2 libssl1.1_1.1.1l-1ubuntu1 libssl3_3.0.1-0ubuntu1 libstdc++-11-dev_11.2.0-18ubuntu1 libstdc++6_12-20220302-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_249.10-0ubuntu2 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libtsan0_11.2.0-18ubuntu1 libubsan1_12-20220302-1ubuntu1 libuchardet0_0.0.7-1build1 libudev1_249.10-0ubuntu2 libunistring2_1.0-1 libuuid1_2.37.2-4ubuntu3 libuv1_1.43.0-1 libvulkan1_1.3.204.0-1 libwayland-client0_1.20.0-1 libwayland-server0_1.20.0-1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libx11-dev_2:1.7.2-2 libx11-xcb1_2:1.7.2-2 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: molmodel Binary: libsimtkmolmodel-dev, libsimtkmolmodel3.0 Architecture: any Version: 3.0.113.gd05a5b6-1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://simtk.org/projects/molmodel Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/molmodel Vcs-Git: https://salsa.debian.org/debichem-team/molmodel.git Build-Depends: cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev Package-List: libsimtkmolmodel-dev deb libdevel optional arch=any libsimtkmolmodel3.0 deb libs optional arch=any Checksums-Sha1: 97ca25b063e7fd8b75e380729c0eac0a9a776231 8554616 molmodel_3.0.113.gd05a5b6.orig.tar.xz 3c9a5bb0ae3c33bd4d56d48cb9956ee5bca19daa 2552 molmodel_3.0.113.gd05a5b6-1.debian.tar.xz Checksums-Sha256: 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PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22457770 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22457770 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22457770 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package molmodel dpkg-buildpackage: info: source version 3.0.113.gd05a5b6-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DBUILD_EXAMPLES=OFF cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_EXAMPLES=OFF .. CMake Deprecation Warning at CMakeLists.txt:31 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find OpenMM (missing: OpenMM_INCLUDE_DIR OpenMM_LIBRARIES) CMake Deprecation Warning at cmake_modules/FindSimbody.cmake:74 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. Call Stack (most recent call first): CMakeLists.txt:170 (find_package) -- Could not find 'svnversion' executable; 'about' will be wrong. 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-DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -c /<>/src/AtomSubsystem.cpp cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -c /<>/src/About.cpp cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" 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/<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -c /<>/src/Element.cpp [ 8%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -c /<>/src/MolecularMechanicsSystem.cpp [ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o -c /<>/src/PDBReader.cpp [ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o -c /<>/src/Pdb.cpp [ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -c /<>/src/PeriodicVmdReporter.cpp [ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o -c /<>/src/Representation.cpp [ 12%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -c /<>/src/RiboseMobilizer.cpp [ 13%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o -c /<>/src/TinkerAmber99.cpp [ 14%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o -c /<>/src/VanderWallSphere.cpp [ 15%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o -c /<>/src/VelocityRescalingThermostat.cpp [ 15%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o -c /<>/src/VmdConnection.cpp [ 16%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o -c /<>/src/gbsa/CpuImplicitSolvent.cpp [ 17%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o -c /<>/src/gbsa/CpuObc.cpp [ 18%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o -c /<>/src/gbsa/ImplicitSolventParameters.cpp [ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o -c /<>/src/gbsa/ObcParameters.cpp [ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o -c /<>/src/gbsa/SimTKOpenMMCommon.cpp [ 20%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o -c /<>/src/gbsa/SimTKOpenMMLog.cpp [ 21%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o -c /<>/src/gbsa/SimTKOpenMMUtilities.cpp [ 22%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o -c /<>/src/gbsa/cpuObcInterface.cpp [ 23%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o -c /<>/src/imd.cpp [ 24%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o -c /<>/src/vmdsock.cpp [ 24%] Linking CXX shared library ../libSimTKmolmodel.so cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.0 -o ../libSimTKmolmodel.so.3.0 CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 -lz /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm cd /<>/obj-aarch64-linux-gnu/sharedTarget && /usr/bin/cmake -E cmake_symlink_library ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 24%] Built target SimTKmolmodel make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/depend make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/depend make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/depend make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiopolymer.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/build make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/build make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 25%] Building CXX object tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -MF CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o.d -o CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -c /<>/tests/TestBiopolymer.cpp [ 26%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o [ 26%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -MF CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o.d -o CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -c /<>/tests/TestBodyIds.cpp cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -MF CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o.d -o CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -c /<>/tests/TestBiotypeSelfCode.cpp [ 27%] Building CXX object tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -MF CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o.d -o CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -c /<>/tests/TestAtomTargetLocations.cpp [ 28%] Linking CXX executable ../TestBiotypeSelfCode cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiotypeSelfCode.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -o ../TestBiotypeSelfCode -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 28%] Built target TestBiotypeSelfCode make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 29%] Building CXX object tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -MF CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o.d -o CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -c /<>/tests/TestCompoundTransforms.cpp [ 30%] Linking CXX executable ../TestBiopolymer cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 31%] Linking CXX executable ../TestAtomTargetLocations cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 32%] Linking CXX executable ../TestBodyIds cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBodyIds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -o ../TestBodyIds -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 32%] Built target TestBiopolymer make -f tests/CMakeFiles/TestDihedrals2.dir/build.make tests/CMakeFiles/TestDihedrals2.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestDihedrals2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestDihedrals2.dir/build.make tests/CMakeFiles/TestDihedrals2.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 32%] Building CXX object tests/CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o -MF CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o.d -o CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o -c /<>/tests/TestDihedrals2.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 32%] Built target TestAtomTargetLocations make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestDuMMForces.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 33%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -MF CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o.d -o CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -c /<>/tests/TestDuMMForces.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 33%] Built target TestBodyIds make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 34%] Building CXX object tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o -MF CMakeFiles/TestEthane.dir/TestEthane.cpp.o.d -o CMakeFiles/TestEthane.dir/TestEthane.cpp.o -c /<>/tests/TestEthane.cpp [ 35%] Linking CXX executable ../TestCompoundTransforms cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCompoundTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -o ../TestCompoundTransforms -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 35%] Built target TestCompoundTransforms make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 36%] Building CXX object tests/CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -MF CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o.d -o CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -c /<>/tests/TestFitMagnesiums.cpp [ 37%] Linking CXX executable ../TestDihedrals2 cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDihedrals2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o -o ../TestDihedrals2 -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 38%] Linking CXX executable ../TestDuMMForces cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDuMMForces.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -o ../TestDuMMForces -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 38%] Linking CXX executable ../TestEthane cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 38%] Built target TestDihedrals2 make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 39%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -MF CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o.d -o CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -c /<>/tests/TestForeignBodyIds.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 39%] Built target TestDuMMForces make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGbsa.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 40%] Building CXX object tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -MF CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o.d -o CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -c /<>/tests/TestGbsa.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 40%] Built target TestEthane make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGetAtomName.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 41%] Building CXX object tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -MF CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o.d -o CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -c /<>/tests/TestGetAtomName.cpp [ 42%] Linking CXX executable ../TestFitMagnesiums cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 42%] Built target TestFitMagnesiums make -f tests/CMakeFiles/TestLoadPdb.dir/build.make tests/CMakeFiles/TestLoadPdb.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoadPdb.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestLoadPdb.dir/build.make tests/CMakeFiles/TestLoadPdb.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 43%] Building CXX object tests/CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o -MF CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o.d -o CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o -c /<>/tests/TestLoadPdb.cpp [ 43%] Linking CXX executable ../TestForeignBodyIds cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestForeignBodyIds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -o ../TestForeignBodyIds -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 44%] Linking CXX executable ../TestGbsa cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 44%] Built target TestForeignBodyIds make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 45%] Building CXX object tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -MF CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o.d -o CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -c /<>/tests/TestLoadVariantRnaAtomNames.cpp [ 46%] Linking CXX executable ../TestGetAtomName cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 46%] Built target TestGbsa make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 47%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -MF CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o.d -o CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -c /<>/tests/TestLoneAtomCoordinates.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 47%] Built target TestGetAtomName make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 48%] Building CXX object tests/CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -MF CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o.d -o CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -c /<>/tests/TestMethaneCartesian.cpp [ 48%] Linking CXX executable ../TestLoadPdb cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o -o ../TestLoadPdb -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 48%] Built target TestLoadPdb make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 49%] Building CXX object tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -MF CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o.d -o CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -c /<>/tests/TestMethanol.cpp [ 50%] Linking CXX executable ../TestLoneAtomCoordinates cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoneAtomCoordinates.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -o ../TestLoneAtomCoordinates -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 50%] Built target TestLoneAtomCoordinates make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 50%] Building CXX object tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -MF CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o.d -o CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -c /<>/tests/TestMgSolvationEnergy.cpp [ 51%] Linking CXX executable ../TestMethaneCartesian cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethaneCartesian.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -o ../TestMethaneCartesian -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 52%] Linking CXX executable ../TestLoadVariantRnaAtomNames cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 52%] Built target TestMethaneCartesian make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 53%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -MF CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o.d -o CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -c /<>/tests/TestNoseHooverThermostat.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 53%] Built target TestLoadVariantRnaAtomNames make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNucleotide2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 54%] Building CXX object tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -MF CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o.d -o CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -c /<>/tests/TestNucleotide2.cpp [ 55%] Linking CXX executable ../TestMethanol cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethanol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -o ../TestMethanol -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 56%] Linking CXX executable ../TestMgSolvationEnergy cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMgSolvationEnergy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -o ../TestMgSolvationEnergy -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 56%] Built target TestMethanol make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 57%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -MF CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o.d -o CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -c /<>/tests/TestOxygenMolecule.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 57%] Built target TestMgSolvationEnergy make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 58%] Building CXX object tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -MF CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o.d -o CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -c /<>/tests/TestPartitioner.cpp [ 59%] Linking CXX executable ../TestNoseHooverThermostat cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 59%] Linking CXX executable ../TestNucleotide2 cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNucleotide2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -o ../TestNucleotide2 -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 59%] Built target TestNoseHooverThermostat make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 60%] Building CXX object tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -MF CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o.d -o CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -c /<>/tests/TestPartitionerDihedrals.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 60%] Built target TestNucleotide2 make -f tests/CMakeFiles/TestPdb.dir/build.make tests/CMakeFiles/TestPdb.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPdb.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestPdb.dir/build.make tests/CMakeFiles/TestPdb.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 61%] Building CXX object tests/CMakeFiles/TestPdb.dir/TestPdb.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestPdb.dir/TestPdb.cpp.o -MF CMakeFiles/TestPdb.dir/TestPdb.cpp.o.d -o CMakeFiles/TestPdb.dir/TestPdb.cpp.o -c /<>/tests/TestPdb.cpp [ 62%] Linking CXX executable ../TestOxygenMolecule cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 62%] Built target TestOxygenMolecule make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 63%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -MF CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o.d -o CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -c /<>/tests/TestPositiveControl.cpp [ 64%] Linking CXX executable ../TestPositiveControl cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPositiveControl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -o ../TestPositiveControl -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 65%] Linking CXX executable ../TestPartitioner cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitioner.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -o ../TestPartitioner -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 65%] Built target TestPositiveControl make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProtein.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 65%] Building CXX object tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o -MF CMakeFiles/TestProtein.dir/TestProtein.cpp.o.d -o CMakeFiles/TestProtein.dir/TestProtein.cpp.o -c /<>/tests/TestProtein.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 65%] Built target TestPartitioner make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 66%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -MF CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o.d -o CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -c /<>/tests/TestProteinDihedrals.cpp [ 66%] Linking CXX executable ../TestPartitionerDihedrals cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitionerDihedrals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -o ../TestPartitionerDihedrals -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 66%] Built target TestPartitionerDihedrals make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRiboseMobilizer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 67%] Building CXX object tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -MF CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o.d -o CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -c /<>/tests/TestRiboseMobilizer.cpp [ 68%] Linking CXX executable ../TestPdb cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestPdb.dir/TestPdb.cpp.o -o ../TestPdb -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 68%] Built target TestPdb make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRna.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 68%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestRna.dir/TestRna.cpp.o -MF CMakeFiles/TestRna.dir/TestRna.cpp.o.d -o CMakeFiles/TestRna.dir/TestRna.cpp.o -c /<>/tests/TestRna.cpp [ 69%] Linking CXX executable ../TestProtein cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 70%] Linking CXX executable ../TestProteinDihedrals cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 70%] Built target TestProteinDihedrals make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSanityDuMM.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 71%] Building CXX object tests/CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -MF CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o.d -o CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -c /<>/tests/TestSanityDuMM.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 71%] Built target TestProtein make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 72%] Building CXX object tests/CMakeFiles/TestSerine.dir/TestSerine.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestSerine.dir/TestSerine.cpp.o -MF CMakeFiles/TestSerine.dir/TestSerine.cpp.o.d -o CMakeFiles/TestSerine.dir/TestSerine.cpp.o -c /<>/tests/TestSerine.cpp [ 73%] Linking CXX executable ../TestRiboseMobilizer cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRiboseMobilizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -o ../TestRiboseMobilizer -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 73%] Built target TestRiboseMobilizer make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSetTorsion.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 74%] Building CXX object tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -MF CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o.d -o CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -c /<>/tests/TestSetTorsion.cpp [ 75%] Linking CXX executable ../TestRna cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestRna.dir/TestRna.cpp.o -o ../TestRna -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 75%] Built target TestRna make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 76%] Building CXX object tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -MF CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o.d -o CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -c /<>/tests/TestShortPdbLines.cpp [ 77%] Linking CXX executable ../TestSanityDuMM cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSanityDuMM.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -o ../TestSanityDuMM -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 77%] Built target TestSanityDuMM make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 77%] Building CXX object tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -MF CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o.d -o CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -c /<>/tests/TestTinkerAmber.cpp [ 77%] Linking CXX executable ../TestSerine cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestSerine.dir/TestSerine.cpp.o -o ../TestSerine -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 77%] Built target TestSerine make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 78%] Building CXX object tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -MF CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o.d -o CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -c /<>/tests/TestTorsionPartitioner.cpp [ 79%] Linking CXX executable ../TestSetTorsion cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 79%] Built target TestSetTorsion make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 80%] Building CXX object tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -MF CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o.d -o CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -c /<>/tests/TestVelocityRescalingThermostat.cpp [ 80%] Linking CXX executable ../TestShortPdbLines cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestShortPdbLines.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -o ../TestShortPdbLines -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 80%] Built target TestShortPdbLines make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 80%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -MF CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o.d -o CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -c /<>/tests/TestWriteDefaultPdb.cpp [ 81%] Linking CXX executable ../TestTinkerAmber cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 81%] Built target TestTinkerAmber make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests /<>/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 82%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -MF CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o.d -o CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -c /<>/tests/TestWriteSimtimePdb.cpp [ 83%] Linking CXX executable ../TestVelocityRescalingThermostat cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 84%] Linking CXX executable ../TestTorsionPartitioner cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 84%] Built target TestVelocityRescalingThermostat make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/adhoc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests/adhoc /<>/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 84%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -MF CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o.d -o CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -c /<>/tests/adhoc/RemoveMassCenterDrift.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 84%] Built target TestTorsionPartitioner make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/adhoc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests/adhoc /<>/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 85%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -MF CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o.d -o CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -c /<>/tests/adhoc/RemoveMassCenterDriftWithOptimizer.cpp [ 86%] Linking CXX executable ../TestWriteDefaultPdb cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteDefaultPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -o ../TestWriteDefaultPdb -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 86%] Built target TestWriteDefaultPdb make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/adhoc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests/adhoc /<>/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 87%] Building CXX object tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -MF CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o.d -o CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -c /<>/tests/adhoc/TestEthaneFromSimbody.cpp [ 88%] Linking CXX executable ../TestWriteSimtimePdb cd /<>/obj-aarch64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteSimtimePdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -o ../TestWriteSimtimePdb -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 88%] Built target TestWriteSimtimePdb make -f tests/adhoc/CMakeFiles/TestMemoryUse.dir/build.make tests/adhoc/CMakeFiles/TestMemoryUse.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/adhoc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests/adhoc /<>/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestMemoryUse.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestMemoryUse.dir/build.make tests/adhoc/CMakeFiles/TestMemoryUse.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 88%] Building CXX object tests/adhoc/CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o -MF CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o.d -o CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o -c /<>/tests/adhoc/TestMemoryUse.cpp /<>/tests/adhoc/TestMemoryUse.cpp: In function ‘size_t memory_used(bool)’: /<>/tests/adhoc/TestMemoryUse.cpp:36:25: warning: format ‘%u’ expects argument of type ‘unsigned int*’, but argument 3 has type ‘long unsigned int*’ [-Wformat=] 36 | fscanf (file, "%ul", &vm); // Just need the first num: vm size | ~^ ~~~ | | | | | long unsigned int* | unsigned int* | %lu [ 89%] Linking CXX executable ../../RemoveMassCenterDrift cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDrift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -o ../../RemoveMassCenterDrift -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 90%] Linking CXX executable ../../RemoveMassCenterDriftWithOptimizer cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -o ../../RemoveMassCenterDriftWithOptimizer -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 90%] Built target RemoveMassCenterDrift make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/adhoc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests/adhoc /<>/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 91%] Building CXX object tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -MF CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o.d -o CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -c /<>/tests/adhoc/TestSerineWithViz.cpp /<>/tests/adhoc/TestMemoryUse.cpp:36:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 36 | fscanf (file, "%ul", &vm); // Just need the first num: vm size | ~~~~~~~^~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 91%] Built target RemoveMassCenterDriftWithOptimizer make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/adhoc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests/adhoc /<>/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 92%] Building CXX object tests/adhoc/CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -MF CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o.d -o CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -c /<>/tests/adhoc/TestSimpleProtein.cpp [ 93%] Linking CXX executable ../../TestEthaneFromSimbody cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthaneFromSimbody.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -o ../../TestEthaneFromSimbody -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 93%] Built target TestEthaneFromSimbody make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/adhoc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests/adhoc /<>/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 94%] Building CXX object tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -MF CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o.d -o CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -c /<>/tests/adhoc/TestSodiumWithViz.cpp [ 95%] Linking CXX executable ../../TestMemoryUse cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMemoryUse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o -o ../../TestMemoryUse -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 95%] Built target TestMemoryUse make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/adhoc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tests/adhoc /<>/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 96%] Building CXX object tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -MF CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o.d -o CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -c /<>/tests/adhoc/TestWriteLargerPdb.cpp [ 97%] Linking CXX executable ../../TestSerineWithViz cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 97%] Built target TestSerineWithViz [ 98%] Linking CXX executable ../../TestSimpleProtein cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSimpleProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -o ../../TestSimpleProtein -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm [ 99%] Linking CXX executable ../../TestSodiumWithViz cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSodiumWithViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -o ../../TestSodiumWithViz -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 99%] Built target TestSodiumWithViz make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 99%] Built target TestSimpleProtein [100%] Linking CXX executable ../../TestWriteLargerPdb cd /<>/obj-aarch64-linux-gnu/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteLargerPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -rdynamic CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -o ../../TestWriteLargerPdb -Wl,-rpath,/<>/obj-aarch64-linux-gnu ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target TestWriteLargerPdb make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-aarch64-linux-gnu && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/doc/api/Molmodel/html -- Installing: /<>/debian/tmp/usr/doc/MolmodelAPI.html -- Installing: /<>/debian/tmp/usr/include/Molmodel.h -- Installing: /<>/debian/tmp/usr/include/SimTKmolmodel.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/AtomSubsystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Biotype.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Clonable.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Compound.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/CompoundModeler.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/CompoundSystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/DNA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/DuMMForceFieldSubsystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Element.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Exceptions.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/GrinPointer.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Ions.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Ligands.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Linkage.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/MassCenterMotionRemover.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/MolecularMechanicsSystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/NA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/NoseHooverThermostat.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/PDBReader.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Pdb.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/PeriodicPdbWriter.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/PeriodicVmdReporter.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Protein.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/RNA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/RiboseMobilizer.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Superpose.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/VanDerWaalsForce.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/VanderWallSphere.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/VelocityRescalingThermostat.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/VmdConnection.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/VoxelHash.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/Water.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/bondGeometry.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/common.h -- Installing: /<>/debian/tmp/usr/include/molmodel/internal/units.h -- Installing: /<>/debian/tmp/usr/doc/MolmodelUsersGuide.pdf -- Installing: /<>/debian/tmp/usr/lib/libSimTKmolmodel.so.3.0 -- Installing: /<>/debian/tmp/usr/lib/libSimTKmolmodel.so make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install dh_install -plibsimtkmolmodel3.0 debian/tmp/usr/lib/libSimTKmolmodel.so.* usr/lib/aarch64-linux-gnu dh_install -plibsimtkmolmodel-dev debian/tmp/usr/lib/libSimTKmolmodel.so usr/lib/aarch64-linux-gnu rm -rf debian/tmp/usr/examples # not installing examples for now make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a e2afa90c58c13356189231e660be8f8b35eb0e08 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libsimtkmolmodel3.0 (in debian/libsimtkmolmodel3.0); do_strip: , oemstrip: pkgstriptranslations: processing libsimtkmolmodel3.0-dbgsym (in debian/.debhelper/libsimtkmolmodel3.0/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libsimtkmolmodel-dev (in debian/libsimtkmolmodel-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libsimtkmolmodel3.0/DEBIAN/control, package libsimtkmolmodel3.0, directory debian/libsimtkmolmodel3.0 INFO: pkgstripfiles: waiting for lock (libsimtkmolmodel3.0) ... pkgstripfiles: processing control file: debian/.debhelper/libsimtkmolmodel3.0/dbgsym-root/DEBIAN/control, package libsimtkmolmodel3.0-dbgsym, directory debian/.debhelper/libsimtkmolmodel3.0/dbgsym-root dpkg-deb: building package 'libsimtkmolmodel3.0-dbgsym' in 'debian/.debhelper/scratch-space/build-libsimtkmolmodel3.0/libsimtkmolmodel3.0-dbgsym_3.0.113.gd05a5b6-1_arm64.deb'. pkgstripfiles: processing control file: debian/libsimtkmolmodel-dev/DEBIAN/control, package libsimtkmolmodel-dev, directory debian/libsimtkmolmodel-dev Searching for duplicated docs in dependency libsimtkmolmodel3.0... symlinking changelog.Debian.gz in libsimtkmolmodel-dev to file in libsimtkmolmodel3.0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsimtkmolmodel-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.0.113.gd05a5b6-1_arm64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsimtkmolmodel3.0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsimtkmolmodel3.0' in '../libsimtkmolmodel3.0_3.0.113.gd05a5b6-1_arm64.deb'. Renaming libsimtkmolmodel3.0-dbgsym_3.0.113.gd05a5b6-1_arm64.deb to libsimtkmolmodel3.0-dbgsym_3.0.113.gd05a5b6-1_arm64.ddeb dpkg-genbuildinfo --build=any -O../molmodel_3.0.113.gd05a5b6-1_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../molmodel_3.0.113.gd05a5b6-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-03-09T21:57:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ molmodel_3.0.113.gd05a5b6-1_arm64.changes: ------------------------------------------ Format: 1.8 Date: Fri, 26 Nov 2021 09:53:39 -0500 Source: molmodel Binary: libsimtkmolmodel-dev libsimtkmolmodel3.0 Built-For-Profiles: noudeb Architecture: arm64 Version: 3.0.113.gd05a5b6-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andrius Merkys Description: libsimtkmolmodel-dev - C++ API for creating molecular models for SimTK (development file libsimtkmolmodel3.0 - C++ API for creating molecular models for SimTK Changes: molmodel (3.0.113.gd05a5b6-1) unstable; urgency=medium . * New upstream release 3.0.113.gd05a5b6. * Repository has moved to GitHub. * Dropping upstream-integrated patches. * Not building examples (they fail to build). * Build-depends on gemmi-dev. * Build depends on tao-pegtl-dev and zlib1g-dev (needed by gemmi-dev). * Bumping copyright years. 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libpcre3 (= 2:8.39-13build4), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.5-1), libprocps8 (= 2:3.3.17-6ubuntu2), libpsl5 (= 0.21.0-1.2build1), libpthread-stubs0-dev (= 0.4-1build1), librhash0 (= 1.4.2-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-3ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg2-3ubuntu1), libseccomp2 (= 2.5.3-2ubuntu1), libselinux1 (= 3.3-1build1), libsensors-config (= 1:3.6.0-7build1), libsensors5 (= 1:3.6.0-7build1), libsigsegv2 (= 2.13-1ubuntu2), libsimbody-dev (= 3.6.1+dfsg-7build1), libsimbody3.6 (= 3.6.1+dfsg-7build1), libsm-dev (= 2:1.2.3-1build1), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu3), libssh-4 (= 0.9.6-2), libssl3 (= 3.0.1-0ubuntu1), libstdc++-11-dev (= 11.2.0-18ubuntu1), libstdc++6 (= 12-20220302-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.10-0ubuntu2), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-18ubuntu1), libubsan1 (= 12-20220302-1ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 249.10-0ubuntu2), libunistring2 (= 1.0-1), libuuid1 (= 2.37.2-4ubuntu3), libuv1 (= 1.43.0-1), libvulkan1 (= 1.3.204.0-1), libwayland-client0 (= 1.20.0-1), libwayland-server0 (= 1.20.0-1), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libx11-dev (= 2:1.7.2-2), libx11-xcb1 (= 2:1.7.2-2), libxau-dev (= 1:1.0.9-1build4), libxau6 (= 1:1.0.9-1build4), libxcb-dri2-0 (= 1.14-3ubuntu2), libxcb-dri3-0 (= 1.14-3ubuntu2), libxcb-glx0 (= 1.14-3ubuntu2), libxcb-present0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb-sync1 (= 1.14-3ubuntu2), libxcb-xfixes0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxcb1-dev (= 1.14-3ubuntu2), libxdmcp-dev (= 1:1.1.3-0ubuntu4), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext-dev (= 2:1.3.4-1), libxext6 (= 2:1.3.4-1), libxfixes-dev (= 1:6.0.0-1), libxfixes3 (= 1:6.0.0-1), libxi-dev (= 2:1.8-1), libxi6 (= 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1.4.0-1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1637938419" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsimtkmolmodel-dev_3.0.113.gd05a5b6-1_arm64.deb ------------------------------------------------- new Debian package, version 2.0. size 1860938 bytes: control archive=2073 bytes. 1257 bytes, 26 lines control 3129 bytes, 40 lines md5sums Package: libsimtkmolmodel-dev Source: molmodel Version: 3.0.113.gd05a5b6-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 2265 Depends: libsimtkmolmodel3.0 (= 3.0.113.gd05a5b6-1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://simtk.org/projects/molmodel Description: C++ API for creating molecular models for SimTK (development files) Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring. . Molmodel is a C++ API for biochemist-friendly molecular modeling that extends the Simbody API to simplify construction of high-performance articulated models of molecules. . This package contains development files. drwxr-xr-x root/root 0 2021-11-26 14:53 ./ drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/ drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/include/ -rw-r--r-- root/root 3055 2021-08-27 07:52 ./usr/include/Molmodel.h -rw-r--r-- root/root 4277 2021-08-27 07:52 ./usr/include/SimTKmolmodel.h drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/include/molmodel/ drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/include/molmodel/internal/ -rw-r--r-- root/root 7528 2021-08-27 07:52 ./usr/include/molmodel/internal/AtomSubsystem.h -rw-r--r-- root/root 7496 2021-08-27 07:52 ./usr/include/molmodel/internal/Biotype.h -rw-r--r-- root/root 3009 2021-08-27 07:52 ./usr/include/molmodel/internal/Clonable.h -rw-r--r-- root/root 86359 2021-08-27 07:52 ./usr/include/molmodel/internal/Compound.h -rw-r--r-- root/root 7005 2021-08-27 07:52 ./usr/include/molmodel/internal/CompoundModeler.h -rw-r--r-- root/root 6082 2021-08-27 07:52 ./usr/include/molmodel/internal/CompoundSystem.h -rw-r--r-- root/root 22366 2021-08-27 07:52 ./usr/include/molmodel/internal/DNA.h -rw-r--r-- root/root 70215 2021-08-27 07:52 ./usr/include/molmodel/internal/DuMMForceFieldSubsystem.h -rw-r--r-- root/root 19995 2021-08-27 07:52 ./usr/include/molmodel/internal/Element.h -rw-r--r-- root/root 363 2021-08-27 07:52 ./usr/include/molmodel/internal/Exceptions.h -rw-r--r-- root/root 6143 2021-08-27 07:52 ./usr/include/molmodel/internal/GrinPointer.h -rw-r--r-- root/root 15223 2021-08-27 07:52 ./usr/include/molmodel/internal/Ions.h -rw-r--r-- root/root 16871 2021-08-27 07:52 ./usr/include/molmodel/internal/Ligands.h -rw-r--r-- root/root 780 2021-08-27 07:52 ./usr/include/molmodel/internal/Linkage.h -rw-r--r-- root/root 11934 2021-08-27 07:52 ./usr/include/molmodel/internal/MassCenterMotionRemover.h -rw-r--r-- root/root 9510 2021-08-27 07:52 ./usr/include/molmodel/internal/MolecularMechanicsSystem.h -rw-r--r-- root/root 13907 2021-08-27 07:52 ./usr/include/molmodel/internal/NA.h -rw-r--r-- 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./usr/share/doc/libsimtkmolmodel-dev/ lrwxrwxrwx root/root 0 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel-dev/changelog.Debian.gz -> ../libsimtkmolmodel3.0/changelog.Debian.gz -rw-r--r-- root/root 1447 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel-dev/copyright drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel-dev/doc/ -rw-r--r-- root/root 241 2021-08-27 07:52 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelAPI.html -rw-r--r-- root/root 1787506 2021-08-27 07:52 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelUsersGuide.pdf.gz libsimtkmolmodel3.0_3.0.113.gd05a5b6-1_arm64.deb ------------------------------------------------ new Debian package, version 2.0. size 602070 bytes: control archive=1093 bytes. 1238 bytes, 24 lines control 250 bytes, 3 lines md5sums 63 bytes, 1 lines shlibs 72 bytes, 2 lines triggers Package: libsimtkmolmodel3.0 Source: molmodel Version: 3.0.113.gd05a5b6-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1670 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libsimbody3.6, libstdc++6 (>= 11), zlib1g (>= 1:1.2.6) Section: libs Priority: optional Multi-Arch: same Homepage: https://simtk.org/projects/molmodel Description: C++ API for creating molecular models for SimTK Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring. . Molmodel is a C++ API for biochemist-friendly molecular modeling that extends the Simbody API to simplify construction of high-performance articulated models of molecules. drwxr-xr-x root/root 0 2021-11-26 14:53 ./ drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/ drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/ drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 1696640 2021-11-26 14:53 ./usr/lib/aarch64-linux-gnu/libSimTKmolmodel.so.3.0 drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/ drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel3.0/ -rw-r--r-- root/root 443 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel3.0/changelog.Debian.gz -rw-r--r-- root/root 1447 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel3.0/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 960456 Build-Time: 618 Distribution: jammy-proposed Host Architecture: arm64 Install-Time: 25 Job: molmodel_3.0.113.gd05a5b6-1.dsc Machine Architecture: arm64 Package: molmodel Package-Time: 647 Source-Version: 3.0.113.gd05a5b6-1 Space: 960456 Status: successful Version: 3.0.113.gd05a5b6-1 -------------------------------------------------------------------------------- Finished at 2022-03-09T21:57:15Z Build needed 00:10:47, 960456k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22457770 Scanning for processes to kill in build PACKAGEBUILD-22457770